StochKit is an extensible tool for stochastic simulation tool with stochastic and multiscale algorithms.
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README.md

StochKit

StochKit is an extensible stochastic simulation framework developed in C++ that aims to make stochastic simulation accessible to practicing biologists and chemists, while remaining open to extension via new stochastic and multiscale algorithms. StochKit currently supports Linux, Windows, and OS X.

StochKit version 2.0.* contact: stochkit@cs.ucsb.edu

StochKit2 performs stochastic simulations using Gillespie's SSA (and variants). It was developed by Professor Linda Petzold's research group at the University of California, Santa Barbara.

There are 3 versions: Windows (full) version (StochKit2_WINDOWS.zip), Windows "lite" version with limited functionality (StochKit2_WINDOWS_LITE.zip), and the Linux/Unix/Mac OS X version (StochKit2.tgz).

Installation and use

Please read StochKit2_manual.pdf (included with the distribution) for detailed installation and usage instructions.

Copyright

StochKit2 Copyright 2011 Linda Petzold

License

Use of StochKit2 is subject to the license agreement; it is distributed under the GNU General Public License (version 3). See LICENSE.txt for details. ~