##sequence-region gi|15791399|ref|NC_002163.1| 1 1641481
##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=192222
gi|15791399|ref|NC_002163.1|	EMBL	region	1	1641481	.	+	.	ID=gi|15791399|ref|NC_002163.1|:1..1641481;Dbxref=taxon:192222;Is_circular=true;gbkey=Src;mol_type=genomic DNA;strain=NCTC 11168;sub-species=jejuni
gi|15791399|ref|NC_002163.1|	EMBL	gene	1	1323	.	+	.	ID=gene-Cj0001;Name=dnaA;gbkey=Gene;gene=dnaA;gene_biotype=protein_coding;locus_tag=Cj0001
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1	1323	.	+	0	ID=cds-CAL34182.1;Parent=gene-Cj0001;Dbxref=EnsemblGenomes-Gn:Cj0001,EnsemblGenomes-Tr:CAL34182,GOA:Q9PJB0,InterPro:IPR001957,InterPro:IPR003593,InterPro:IPR010921,InterPro:IPR013159,InterPro:IPR013317,InterPro:IPR018312,InterPro:IPR020591,InterPro:IPR024633,InterPro:IPR027417,NCBI_GP:CAL34182.1;Name=CAL34182.1;Note=Original (2000) note: Cj0001%2C dnaA%2C probable chromosomal replication initiator protein%2C len: 440 aa%3B similar to many e.g. DNAA_ECOLI (467 aa)%2C fasta scores%3B opt: 839 z-score: 949.6 E(): 0%2C 32.3%25 identity in 470 aa overlap. 39.9%25 identity to HP1529. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00308 bac_dnaA%2C Bacterial dnaA protein%2C score 419.90%2C E-value 4e-141%3B~Updated (2006) note: Characterised within Escherichia coli with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:6234204%2C PMID:9417934%2C PMID:160000;gbkey=CDS;gene=dnaA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0001;product=chromosomal replication initiator protein;protein_id=CAL34182.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	301	1239	.	+	.	ID=id-Cj0001;Note=HMMPfam hit to PF00308%2C Bacterial dnaA protein%2Cscore 4.2e-124;gbkey=misc_feature;gene=dnaA;inference=protein motif:Pfam:PF00308;locus_tag=Cj0001
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	427	450	.	+	.	ID=id-Cj0001-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=dnaA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0001
gi|15791399|ref|NC_002163.1|	EMBL	gene	1483	2550	.	+	.	ID=gene-Cj0002;Name=dnaN;gbkey=Gene;gene=dnaN;gene_biotype=protein_coding;locus_tag=Cj0002
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1483	2550	.	+	0	ID=cds-CAL34183.1;Parent=gene-Cj0002;Dbxref=EnsemblGenomes-Gn:Cj0002,EnsemblGenomes-Tr:CAL34183,GOA:Q0PCC3,InterPro:IPR001001,InterPro:IPR022634,InterPro:IPR022635,InterPro:IPR022637,UniProtKB/TrEMBL:Q0PCC3,NCBI_GP:CAL34183.1;Name=CAL34183.1;Note=Original (2000) note: Cj0002%2C dnaN%2C probable DNA polymerase III%2C beta chain%2C len: 355 aa%3B similar to e.g. DP3B_ECOLI DNA polymerase III%2C beta chain (EC 2.7.7.7) (366 aa)%2C fasta scores%3B opt: 349 z-score: 372.3 E(): 1.7e-13%2C 19.6%25 identity in 367 aa overlap. 34.2%25 identity to HP0500. Contains Pfam match to entry PF00712 DNA_pol3_beta%2C DNA polymerase III beta subunit%2C score 119.80%2C E-value 5.2e-32%3B~Updated (2006) note: Characterised within Escherichia coli%2C however%2C identity score was marginal. Alignment matched full sequence length and appropriate motifs were present. Thus%2C putative not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:6234204%2C PMID:12832762%2C PMID:1575709;gbkey=CDS;gene=dnaN;inference=protein motif:Pfam:PF00712;locus_tag=Cj0002;product=DNA polymerase III%2C beta chain;protein_id=CAL34183.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1483	1839	.	+	.	ID=id-Cj0002;Note=HMMPfam hit to PF00712%2C DNA polymerase III beta subunit%2C N-te%2C score 1.9e-11;gbkey=misc_feature;gene=dnaN;inference=protein motif:Pfam:PF00712;locus_tag=Cj0002
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1864	2196	.	+	.	ID=id-Cj0002-2;Note=HMMPfam hit to PF02767%2C DNA polymerase III beta subunit%2C cent%2C score 4e-11;gbkey=misc_feature;gene=dnaN;inference=protein motif:Pfam:PF02767;locus_tag=Cj0002
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	2200	2544	.	+	.	ID=id-Cj0002-3;Note=HMMPfam hit to PF02768%2C DNA polymerase III beta subunit%2C C-te%2C score 2.7e-05;gbkey=misc_feature;gene=dnaN;inference=protein motif:Pfam:PF02768;locus_tag=Cj0002
gi|15791399|ref|NC_002163.1|	EMBL	gene	2579	4888	.	+	.	ID=gene-Cj0003;Name=gyrB;gbkey=Gene;gene=gyrB;gene_biotype=protein_coding;locus_tag=Cj0003
gi|15791399|ref|NC_002163.1|	EMBL	CDS	2579	4888	.	+	0	ID=cds-CAL34184.1;Parent=gene-Cj0003;Dbxref=EnsemblGenomes-Gn:Cj0003,EnsemblGenomes-Tr:CAL34184,GOA:O87667,InterPro:IPR001241,InterPro:IPR002288,InterPro:IPR003594,InterPro:IPR006171,InterPro:IPR011557,InterPro:IPR013506,InterPro:IPR013759,InterPro:IPR013760,InterPro:IPR014721,InterPro:IPR018522,InterPro:IPR020568,NCBI_GP:CAL34184.1;Name=CAL34184.1;Note=Original (2000) note: Cj0003%2C gyrB%2C probable DNA gyrase subunit B%2C len: 769 aa%3B similar to many e.g. GYRB_BACSU DNA gyrase subunit B (EC 5.99.1.3) (638 aa)%2Cfasta scores%3B opt: 2130 z-score: 3165.8 E(): 0%2C 47.7%25 identity in 773 aa overlap. 61.2%25 identity to HP0501. Contains PS00177 DNA topoisomerase II signature and Pfam matches to entry PF00204 DNA_topoisoII%2C DNA topoisomerase II (N-terminal region)%2C score 915.20%2C E-value 1.9e-271%2Cand to entry PF00986 DNA_gyraseB_C%2C DNA gyrase B subunit%2Ccarboxyl terminus%2C score 154.00%2C E-value 2.6e-42%3B~Updated (2006) note: Characterised within Escherichia coli and Bacillus subtilis with acceptable identity scores. Thus%2C putative not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:160000%2C PMID:9817874%2C PMID:2987847;gbkey=CDS;gene=gyrB;inference=protein motif:Prosite:PS00177;locus_tag=Cj0003;product=DNA gyrase subunit B;protein_id=CAL34184.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	2666	3097	.	+	.	ID=id-Cj0003;Note=HMMPfam hit to PF02518%2C Histidine kinase-%2C DNA gyrase B-%2C and H%2C score 1.1e-30;gbkey=misc_feature;gene=gyrB;inference=protein motif:Pfam:PF02518;locus_tag=Cj0003
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	3233	3739	.	+	.	ID=id-Cj0003-2;Note=HMMPfam hit to PF00204%2C DNA gyrase B%2C score 6.7e-81;gbkey=misc_feature;gene=gyrB;inference=protein motif:Pfam:PF00204;locus_tag=Cj0003
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	3818	4153	.	+	.	ID=id-Cj0003-3;Note=HMMPfam hit to PF01751%2C Toprim domain%2C score 1e-08;gbkey=misc_feature;gene=gyrB;inference=protein motif:Pfam:PF01751;locus_tag=Cj0003
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	3830	3856	.	+	.	ID=id-Cj0003-4;Note=PS00177 DNA topoisomerase II signature;gbkey=misc_feature;gene=gyrB;inference=protein motif:Prosite:PS00177;locus_tag=Cj0003
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	3962	3994	.	+	.	ID=id-Cj0003-5;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=gyrB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0003
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	4652	4852	.	+	.	ID=id-Cj0003-6;Note=HMMPfam hit to PF00986%2C DNA gyrase B subunit%2Ccarboxyl terminus%2C score 3.1e-43;gbkey=misc_feature;gene=gyrB;inference=protein motif:Pfam:PF00986;locus_tag=Cj0003
gi|15791399|ref|NC_002163.1|	EMBL	gene	4916	5257	.	-	.	ID=gene-Cj0004c;Name=Cj0004c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0004c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	4916	5257	.	-	0	ID=cds-CAL34185.1;Parent=gene-Cj0004c;Dbxref=EnsemblGenomes-Gn:Cj0004c,EnsemblGenomes-Tr:CAL34185,GOA:Q0PCC1,InterPro:IPR009056,UniProtKB/TrEMBL:Q0PCC1,NCBI_GP:CAL34185.1;Name=CAL34185.1;Note=Original (2000) note: Cj0004c%2C possible periplasmic protein%2C len: 113 aa. No Hp match. Contains possible N-terminal signal sequence%3B~Updated (2006) note: NCTC11168 Cj0004c encodes a monohaem cytochrome C (PMID:15632441). Together with Cj0005 (molybdopterin oxidoreductase)%2C they are homologous to sulphite:cytochrome C oxidoreductase (SOR) of Starkeya novella (PMID:11557133). Cj0004 mutants showed wild-type rates of formate-dependent respiration but were unable to respire with sulphite or metabisulphite as electron donors. Periplasmic extracts of wild-type NCTC11168 showed a symmetrical absorption peak (552nm) after addition of sulphite%2C demonstrating the reduction of cytochrome C. No cytochrome C reduction was observed after addition of sulphite to periplasmic extracts of the Cj0004c mutant (PMID:15632441). Characterised within Campylobacter jejuni%2C so putative not added to product function. Functional classification - Energy metabolism -Respiration - Electron transport%3B~PMID:15632441;gbkey=CDS;locus_tag=Cj0004c;product=monohaem cytochrome C;protein_id=CAL34185.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	5120	5137	.	-	.	ID=id-Cj0004c;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0004c
gi|15791399|ref|NC_002163.1|	EMBL	gene	5260	6498	.	-	.	ID=gene-Cj0005c;Name=Cj0005c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0005c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	5260	6498	.	-	0	ID=cds-CAL34186.1;Parent=gene-Cj0005c;Dbxref=EnsemblGenomes-Gn:Cj0005c,EnsemblGenomes-Tr:CAL34186,GOA:Q0PCC0,InterPro:IPR000572,InterPro:IPR005066,InterPro:IPR006311,InterPro:IPR008335,InterPro:IPR014756,UniProtKB/TrEMBL:Q0PCC0,NCBI_GP:CAL34186.1;Name=CAL34186.1;Note=Original (2000) note: Cj0005c%2C possible molybdenum containing oxidoreductase%2C len: 412 aa%3B similar to many eukaryotic oxidoreductases e.g. SUOX_HUMAN sulfite oxidase precursor (488 aa)%2C fasta scores%3B opt: 543 z-score: 338.2 E(): 1.4e-11%2C 29.8%25 identity in 372 aa overlap and NIA_PETHY nitrate reductase from Petunia hybrida (909 aa)%2Cfasta scores%3B opt: 281 z-score: 312.5 E(): 3.8e-10%2C 28.9%25 identity in 395 aa overlap. No Hp match. Contains Pfam match to entry PF00174 oxidored_molyb%2C Oxidoreductase molybdopterin binding domain%2C score 45.20%2C E-value 1e-12%3B~Updated (2006) note: Pfam domain PF03404 Mo-co oxidoreductase dimerisation domain identified within CDS. One probable transmembrane helix predicted by TMHMM2.0. Further support given to product function. Supporting paper identified showing interaction with Cj0004c (PMID:15632441). Product function modified to more specific family member based on characterisation paper. Functional classification - Misc%3B~PMID:15632441;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0005c;product=molydopterin containing oxidoreductase;protein_id=CAL34186.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	5263	5628	.	-	.	ID=id-Cj0005c;Note=HMMPfam hit to PF03404%2C Mo-co oxidoreductase dimerisation doma%2C score 6.8e-19;gbkey=misc_feature;inference=protein motif:Pfam:PF03404;locus_tag=Cj0005c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	5707	6375	.	-	.	ID=id-Cj0005c-2;Note=HMMPfam hit to PF00174%2C Oxidoreductase molybdopterin binding d%2C score 2.1e-14;gbkey=misc_feature;inference=protein motif:Pfam:PF00174;locus_tag=Cj0005c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	6007	6039	.	-	.	ID=id-Cj0005c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0005c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	6403	6462	.	-	.	ID=id-Cj0005c-4;Note=1 probable transmembrane helix predicted for Cj0005c by TMHMM2.0 at aa 13-32;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0005c
gi|15791399|ref|NC_002163.1|	EMBL	gene	6703	8010	.	+	.	ID=gene-Cj0006;Name=Cj0006;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0006
gi|15791399|ref|NC_002163.1|	EMBL	CDS	6703	8010	.	+	0	ID=cds-CAL34187.1;Parent=gene-Cj0006;Dbxref=EnsemblGenomes-Gn:Cj0006,EnsemblGenomes-Tr:CAL34187,GOA:Q0PCB9,InterPro:IPR018461,UniProtKB/TrEMBL:Q0PCB9,NCBI_GP:CAL34187.1;Name=CAL34187.1;Note=Original (2000) note: Cj0006%2C probable integral membrane protein%2C len: 435 aa%3B similar to e.g. Y325_HAEIN hypothetical protein HI0325 (450 aa)%2C fasta scores%3B opt: 757 z-score: 1654.9 E(): 0%2C 44.0%25 identity in 450 aa overlap. 47.2%25 identity to HP0758%3B~Updated (2006) note: Pfam domain PF03553 Na+/H+ antiporter family identified within CDS. Product modified to more specific family member due to motif match. Also%2Celeven probable transmembrane helices predicted by TMHMM2.0 giving further support to product function. No specific characterisation with acceptable identity score has been carried out yet. Thus%2C putative kept within product function. Functional classification -Transport/binding proteins - Cations;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0006;product=putative Na+/H+ antiporter family protein;protein_id=CAL34187.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	6730	6834	.	+	.	ID=id-Cj0006;Note=11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44%2C 65-87%2C 115-134%2C 146-168%2C188-210%2C 236-253%2C 257-275%2C 288-305%2C 327-349%2C 361-383 and 412-434;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0006;part=1/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	6895	6963	.	+	.	ID=id-Cj0006;Note=11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44%2C 65-87%2C 115-134%2C 146-168%2C188-210%2C 236-253%2C 257-275%2C 288-305%2C 327-349%2C 361-383 and 412-434;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0006;part=2/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	7045	7104	.	+	.	ID=id-Cj0006;Note=11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44%2C 65-87%2C 115-134%2C 146-168%2C188-210%2C 236-253%2C 257-275%2C 288-305%2C 327-349%2C 361-383 and 412-434;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0006;part=3/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	7138	7206	.	+	.	ID=id-Cj0006;Note=11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44%2C 65-87%2C 115-134%2C 146-168%2C188-210%2C 236-253%2C 257-275%2C 288-305%2C 327-349%2C 361-383 and 412-434;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0006;part=4/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	7264	7332	.	+	.	ID=id-Cj0006;Note=11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44%2C 65-87%2C 115-134%2C 146-168%2C188-210%2C 236-253%2C 257-275%2C 288-305%2C 327-349%2C 361-383 and 412-434;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0006;part=5/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	7408	7461	.	+	.	ID=id-Cj0006;Note=11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44%2C 65-87%2C 115-134%2C 146-168%2C188-210%2C 236-253%2C 257-275%2C 288-305%2C 327-349%2C 361-383 and 412-434;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0006;part=6/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	7471	7527	.	+	.	ID=id-Cj0006;Note=11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44%2C 65-87%2C 115-134%2C 146-168%2C188-210%2C 236-253%2C 257-275%2C 288-305%2C 327-349%2C 361-383 and 412-434;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0006;part=7/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	7564	7617	.	+	.	ID=id-Cj0006;Note=11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44%2C 65-87%2C 115-134%2C 146-168%2C188-210%2C 236-253%2C 257-275%2C 288-305%2C 327-349%2C 361-383 and 412-434;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0006;part=8/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	7681	7749	.	+	.	ID=id-Cj0006;Note=11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44%2C 65-87%2C 115-134%2C 146-168%2C188-210%2C 236-253%2C 257-275%2C 288-305%2C 327-349%2C 361-383 and 412-434;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0006;part=9/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	7783	7851	.	+	.	ID=id-Cj0006;Note=11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44%2C 65-87%2C 115-134%2C 146-168%2C188-210%2C 236-253%2C 257-275%2C 288-305%2C 327-349%2C 361-383 and 412-434;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0006;part=10/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	7936	8004	.	+	.	ID=id-Cj0006;Note=11 probable transmembrane helices predicted for Cj0006 by TMHMM2.0 at aa 10-44%2C 65-87%2C 115-134%2C 146-168%2C188-210%2C 236-253%2C 257-275%2C 288-305%2C 327-349%2C 361-383 and 412-434;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0006;part=11/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	7000	7032	.	+	.	ID=id-Cj0006-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0006
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	7141	7989	.	+	.	ID=id-Cj0006-3;Note=HMMPfam hit to PF03553%2C Na+/H+ antiporter family%2Cscore 4.4e-90;gbkey=misc_feature;inference=protein motif:Pfam:PF03553;locus_tag=Cj0006
gi|15791399|ref|NC_002163.1|	EMBL	gene	8144	12634	.	+	.	ID=gene-Cj0007;Name=gltB;gbkey=Gene;gene=gltB;gene_biotype=protein_coding;locus_tag=Cj0007
gi|15791399|ref|NC_002163.1|	EMBL	CDS	8144	12634	.	+	0	ID=cds-CAL34188.1;Parent=gene-Cj0007;Dbxref=EnsemblGenomes-Gn:Cj0007,EnsemblGenomes-Tr:CAL34188,GOA:Q0PCB8,InterPro:IPR000583,InterPro:IPR002489,InterPro:IPR002932,InterPro:IPR006982,InterPro:IPR013785,InterPro:IPR017932,InterPro:IPR029055,UniProtKB/TrEMBL:Q0PCB8,NCBI_GP:CAL34188.1;Name=CAL34188.1;Note=Original (2000) note: Cj0007%2C gltB%2C probable glutamate synthase (NADPH) large subunit%2C len: 1496 aa%3B similar to many e.g. GLTB_ECOLI glutamate synthase (NADPH) large chain (1517 aa)%2C fasta scores%3B opt: 3846 z-score: 3828.3 E(): 0%2C 42.5%25 identity in 1488 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF00310 Glutamine amidotransferases class-II%2C PF04898 Glutamate synthase central domain%2C PF01645 Conserved region in glutamate synthase and PF01493 GXGXG motif were all identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with acceptable identity score. Thus%2C putative not added to product function. Functional classification - Central intermediary metabolism - General%3B~PMID:2548995%2C PMID:11029411;gbkey=CDS;gene=gltB;inference=protein motif:Pfam:PF04898;locus_tag=Cj0007;product=glutamate synthase (NADPH) large subunit;protein_id=CAL34188.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	8216	9310	.	+	.	ID=id-Cj0007;Note=HMMPfam hit to PF00310%2C Glutamine amidotransferases class-II%2C score 5.9e-222;gbkey=misc_feature;gene=gltB;inference=protein motif:Pfam:PF00310;locus_tag=Cj0007
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	9533	10381	.	+	.	ID=id-Cj0007-2;Note=HMMPfam hit to PF04898%2C Glutamate synthase central domain%2C score 1.8e-181;gbkey=misc_feature;gene=gltB;inference=protein motif:Pfam:PF04898;locus_tag=Cj0007
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	10547	11644	.	+	.	ID=id-Cj0007-3;Note=HMMPfam hit to PF01645%2C Conserved region in glutamate synthas%2C score 1e-224;gbkey=misc_feature;gene=gltB;inference=protein motif:Pfam:PF01645;locus_tag=Cj0007
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	11450	11482	.	+	.	ID=id-Cj0007-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=gltB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0007
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	11870	12451	.	+	.	ID=id-Cj0007-5;Note=HMMPfam hit to PF01493%2C GXGXG motif%2C score 4.1e-72;gbkey=misc_feature;gene=gltB;inference=protein motif:Pfam:PF01493;locus_tag=Cj0007
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	11987	12043	.	+	.	ID=id-Cj0007-6;Note=PS00095 C-5 cytosine-specific DNA methylases C-terminal signature;gbkey=misc_feature;gene=gltB;inference=protein motif:Prosite:PS00095;locus_tag=Cj0007
gi|15791399|ref|NC_002163.1|	EMBL	gene	12644	14395	.	+	.	ID=gene-Cj0008;Name=Cj0008;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0008
gi|15791399|ref|NC_002163.1|	EMBL	CDS	12644	14395	.	+	0	ID=cds-CAL34189.1;Parent=gene-Cj0008;Dbxref=EnsemblGenomes-Gn:Cj0008,EnsemblGenomes-Tr:CAL34189,InterPro:IPR004919,UniProtKB/TrEMBL:Q0PCB7,NCBI_GP:CAL34189.1;Name=CAL34189.1;Note=Original (2000) note: Cj0008%2C unknown%2C len: 583 aa%3B similar to Y686_METJA hypothetical protein MJ0686 (580 aa)%2C fasta scores%3B opt: 171 z-score: 228.3 E(): 1.9e-05%2C22.8%25 identity in 609 aa overlap. 37.5%25 identity in N-term to HP0938%2C 30.0%25 identity in C-term to HP0937%3B~Updated (2006) note: Pfam PF03235 Protein of unknown function (DUF262)%2C was present within CDS. Conserved added to product function as motif was identified. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF03235;locus_tag=Cj0008;product=conserved hypothetical protein Cj0008;protein_id=CAL34189.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	12668	13450	.	+	.	ID=id-Cj0008;Note=HMMPfam hit to PF03235%2C Protein of unknown function DUF262%2C score 0.00029;gbkey=misc_feature;inference=protein motif:Pfam:PF03235;locus_tag=Cj0008
gi|15791399|ref|NC_002163.1|	EMBL	gene	14398	15843	.	+	.	ID=gene-Cj0009;Name=gltD;gbkey=Gene;gene=gltD;gene_biotype=protein_coding;locus_tag=Cj0009
gi|15791399|ref|NC_002163.1|	EMBL	CDS	14398	15843	.	+	0	ID=cds-CAL34190.1;Parent=gene-Cj0009;Dbxref=EnsemblGenomes-Gn:Cj0009,EnsemblGenomes-Tr:CAL34190,GOA:Q0PCB6,InterPro:IPR001327,InterPro:IPR006005,InterPro:IPR009051,InterPro:IPR023753,InterPro:IPR028261,UniProtKB/TrEMBL:Q0PCB6,NCBI_GP:CAL34190.1;Name=CAL34190.1;Note=Original (2000) note: Cj0009%2C gltD%2C probable glutamate synthase (NADPH) small subunit%2C len: 481 aa%3B similar to many e.g. GLTD_ECOLI glutamate synthase (NADPH) small chain (EC 1.4.1.13) (471 aa)%2C fasta scores%3B opt: 807 z-score: 909.0 E(): 0%2C 33.0%25 identity in 482 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00070 Pyridine nucleotide-disulphide oxidoreductase%2C PF07992 Pyridine nucleotide-disulphide oxidoreductase%2C PF03486 HI0933-like protein%2C PF01266 FAD dependent oxidoreductase%2C PF00890 FAD binding domain and PF01593 Flavin containing amine oxidoreductase were identified within CDS. All Pfam matches were identified by carrying out individual Pfam search. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not added to product function. Functional classification - Central intermediary metabolism - General%3B~PMID:10481090;gbkey=CDS;gene=gltD;inference=protein motif:Pfam:PF07992;locus_tag=Cj0009;product=glutamate synthase (NADPH) small subunit;protein_id=CAL34190.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	14857	15774	.	+	.	ID=id-Cj0009;Note=HMMPfam hit to PF00070%2C Pyridine nucleotide-disulphide oxidoreducta%2C score 2.4e-23;gbkey=misc_feature;gene=gltD;inference=protein motif:Pfam:PF00070;locus_tag=Cj0009
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	14866	14898	.	+	.	ID=id-Cj0009-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=gltD;inference=protein motif:Prosite:PS00013;locus_tag=Cj0009
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	15619	15651	.	+	.	ID=id-Cj0009-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=gltD;inference=protein motif:Prosite:PS00013;locus_tag=Cj0009
gi|15791399|ref|NC_002163.1|	EMBL	gene	15844	16419	.	-	.	ID=gene-Cj0010c;Name=rnhB;gbkey=Gene;gene=rnhB;gene_biotype=protein_coding;locus_tag=Cj0010c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	15844	16419	.	-	0	ID=cds-CAL34191.1;Parent=gene-Cj0010c;Dbxref=EnsemblGenomes-Gn:Cj0010c,EnsemblGenomes-Tr:CAL34191,GOA:Q9PJA1,InterPro:IPR001352,InterPro:IPR012337,InterPro:IPR022898,InterPro:IPR024567,NCBI_GP:CAL34191.1;Name=CAL34191.1;Note=Original (2000) note: Cj0010c%2C rnhB%2C probable ribonuclease HII%2C len: 191 aa%3B similar to many e.g. RNH2_ECOLI ribonuclease HII (EC 3.1.26.4) (198 aa)%2C fasta scores%3B opt: 303 z-score: 506.7 E(): 5.7e-21%2C 38.6%25 identity in 176 aa overlap. 42.7%25 identity to HP1323%3B~Updated (2006) note: Pfam PF01351 Ribonuclease HII was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not added to product function. Functional classification -Degradation of macromolecules%3B~PMID:2172991%2C PMID:9888800;gbkey=CDS;gene=rnhB;inference=protein motif:Pfam:PF01351;locus_tag=Cj0010c;product=ribonuclease HII;protein_id=CAL34191.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	15847	16365	.	-	.	ID=id-Cj0010c;Note=HMMPfam hit to PF01351%2C Ribonuclease HII%2C score 7.2e-39;gbkey=misc_feature;gene=rnhB;inference=protein motif:Pfam:PF01351;locus_tag=Cj0010c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	16306	16338	.	-	.	ID=id-Cj0010c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=rnhB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0010c
gi|15791399|ref|NC_002163.1|	EMBL	gene	16452	16691	.	-	.	ID=gene-Cj0011c;Name=Cj0011c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0011c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	16452	16691	.	-	0	ID=cds-CAL34192.1;Parent=gene-Cj0011c;Dbxref=EnsemblGenomes-Gn:Cj0011c,EnsemblGenomes-Tr:CAL34192,GOA:Q0PCB4,InterPro:IPR003583,InterPro:IPR004509,InterPro:IPR010994,UniProtKB/TrEMBL:Q0PCB4,NCBI_GP:CAL34192.1;Name=CAL34192.1;Note=Updated (2006) note: Characterisation work carried out within Bacillus subtilis%2C however%2C sequence alignment was only partial. Putative kept within product function%3B~Original (2000) note: Cj0011c%2C possible non-specific DNA binding protein%2C len: 79 aa%3B similar to the C-terminus of CME1_BACSU comE operon protein 1 (comeA) (205 aa)%2C fasta scores%3B opt: 223 z-score: 359.5 E(): 9e-13%2C 56.9%25 identity in 65 aa overlap. No Hp match. Contains Pfam match to entry PF00633 HHH%2CHelix-hairpin-helix motif.%2C score 31.80%2C E-value 1.6e-05%3B~PMID:7968523%2C PMID:7768800;gbkey=CDS;inference=protein motif:Pfam:PF00633;locus_tag=Cj0011c;product=putative non-specific DNA binding protein. Functional classification-Synthesis and modification of macromolecules-DNA replication%2Crestriction/modification%2C recombination and repair;protein_id=CAL34192.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	16467	16553	.	-	.	ID=id-Cj0011c;Note=HMMPfam hit to PF00633%2C Helix-hairpin-helix motif%2Cscore 2.1;gbkey=misc_feature;inference=protein motif:Pfam:PF00633;locus_tag=Cj0011c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	16554	16643	.	-	.	ID=id-Cj0011c-2;Note=HMMPfam hit to PF00633%2C Helix-hairpin-helix motif%2Cscore 1.5e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF00633;locus_tag=Cj0011c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	16614	16682	.	-	.	ID=id-Cj0011c-3;Note=1 probable transmembrane helix predicted for Cj0011c by TMHMM2.0 at aa 4-26;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0011c
gi|15791399|ref|NC_002163.1|	EMBL	gene	16756	17403	.	-	.	ID=gene-Cj0012c;Name=rrc;gbkey=Gene;gene=rrc;gene_biotype=protein_coding;locus_tag=Cj0012c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	16756	17403	.	-	0	ID=cds-CAL34193.1;Parent=gene-Cj0012c;Dbxref=EnsemblGenomes-Gn:Cj0012c,EnsemblGenomes-Tr:CAL34193,GOA:Q0PCB3,InterPro:IPR003251,InterPro:IPR004039,InterPro:IPR004462,InterPro:IPR009040,InterPro:IPR009078,InterPro:IPR012347,InterPro:IPR024934,UniProtKB/TrEMBL:Q0PCB3,NCBI_GP:CAL34193.1;Name=CAL34193.1;Note=Original (2000) note: Cj0012c%2C non-haem iron protein%2C len: 215 aa%3B has three possible iron-binding domains%3B C-terminus is similar to rubrerythrins e.g. RUBY_DESVH rubrerythrin (191 aa)%2C fasta scores%3B opt: 454 z-score: 746.8 E(): 0%2C 39.5%25 identity in 190 aa overlap%2Cwith the iron-binding residues of both the rubredoxin-like center non-sulfur oxo-bridged di-iron center conserved. N-terminal 33 aa are simialar to the iron-bindingdomain of desulfoferrodoxins e.g. DESR_DESVH desulfoferrodoxin (125 aa)%2C fasta scores%3B opt: 161 z-score: 275.8 E(): 4.2e-08%2C68.8%25 identity in 32 aa overlap%2C with the iron-binding residues conserved. No Hp match%3B~Updated (2006) note: Pfam domains PF00301 Rubredoxin%2C PF02915 Rubrerythrin and PF06397 Desulfoferrodoxin%2C N-terminal domain were all identified within CDS. Further support given to product function. Characterisation paper within Campylobacter also identified allowing gene name to be designated as Rrc (Rbo/Rbr-like protein of C. jejuni) protein. Thus%2Cputative not added to product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:15158262;gbkey=CDS;gene=rrc;inference=protein motif:Pfam:PF06397;locus_tag=Cj0012c;product=non-haem iron protein;protein_id=CAL34193.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	16777	16872	.	-	.	ID=id-Cj0012c;Note=HMMPfam hit to PF00301%2C Rubredoxin%2C score 1.9e-05;gbkey=misc_feature;gene=rrc;inference=protein motif:Pfam:PF00301;locus_tag=Cj0012c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	16903	17283	.	-	.	ID=id-Cj0012c-2;Note=HMMPfam hit to PF02915%2C Rubrerythrin%2C score 6e-43;gbkey=misc_feature;gene=rrc;inference=protein motif:Pfam:PF02915;locus_tag=Cj0012c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	17296	17403	.	-	.	ID=id-Cj0012c-3;Note=HMMPfam hit to PF06397%2C Desulfoferrodoxin%2CN-terminal domain%2C score 4.4e-20;gbkey=misc_feature;gene=rrc;inference=protein motif:Pfam:PF06397;locus_tag=Cj0012c
gi|15791399|ref|NC_002163.1|	EMBL	gene	17563	19239	.	+	.	ID=gene-Cj0013;Name=ilvD;gbkey=Gene;gene=ilvD;gene_biotype=protein_coding;locus_tag=Cj0013
gi|15791399|ref|NC_002163.1|	EMBL	CDS	17563	19239	.	+	0	ID=cds-CAL34194.1;Parent=gene-Cj0013;Dbxref=EnsemblGenomes-Gn:Cj0013,EnsemblGenomes-Tr:CAL34194,GOA:Q9PJ98,InterPro:IPR000581,InterPro:IPR004404,InterPro:IPR015928,InterPro:IPR020558,NCBI_GP:CAL34194.1;Name=CAL34194.1;Note=Original (2000) note: Cj0013%2C ilvD%2C probable dihydroxy-acid dehydratase%2C len: 558 aa%3B highly similar to e.g. ILVD_ECOLI dihydroxy-acid dehydratase (EC 4.2.1.9) (605 aa)%2C fasta scores%3B opt: 1091 z-score: 2191.4 E(): 0%2C46.9%25 identity in 597 aa overlap. 32.0%25 identity to HP1100 (6-phosphogluconate dehydratase). Contains PS00886 and PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signatures 1 and 2%2C and Pfam match to entry PF00920 ILVD_EDD%2C Dehydratase family%2C score 784.10%2C E-value 5.5e-232%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Appropriate motifs present. Thus%2C putative not added to product function. Functional classification - Amino acid biosynthesis - Branched chain family%3B~PMID:3897211%2C PMID:790150%2C PMID:1646790;gbkey=CDS;gene=ilvD;inference=protein motif:Prosite:PS00887;locus_tag=Cj0013;product=dihydroxy-acid dehydratase;protein_id=CAL34194.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	17653	19230	.	+	.	ID=id-Cj0013;Note=HMMPfam hit to PF00920%2C Dehydratase family%2C score 0;gbkey=misc_feature;gene=ilvD;inference=protein motif:Pfam:PF00920;locus_tag=Cj0013
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	17917	17949	.	+	.	ID=id-Cj0013-2;Note=PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1;gbkey=misc_feature;gene=ilvD;inference=protein motif:Prosite:PS00886;locus_tag=Cj0013
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	18952	18987	.	+	.	ID=id-Cj0013-3;Note=PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2;gbkey=misc_feature;gene=ilvD;inference=protein motif:Prosite:PS00887;locus_tag=Cj0013
gi|15791399|ref|NC_002163.1|	EMBL	gene	19251	19775	.	-	.	ID=gene-Cj0014c;Name=Cj0014c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0014c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	19251	19775	.	-	0	ID=cds-CAL34195.1;Parent=gene-Cj0014c;Dbxref=EnsemblGenomes-Gn:Cj0014c,EnsemblGenomes-Tr:CAL34195,InterPro:IPR009898,UniProtKB/TrEMBL:Q0PCB1,NCBI_GP:CAL34195.1;Name=CAL34195.1;Note=Original (2000) note: Cj0014c%2C probable integral membrane protein%2C len: 174 aa%3B similar to YAGU_ECOLI hypothetical 23.0 kd protein in intF-eaeH intergenic region (204 aa)%2C fasta scores%3B opt: 402 z-score: 821.6 E(): 0%2C 45.1%25 identity in 184 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF07274 Protein of unknown function (DUF1440) identified within CDS. Also%2Cthree probable transmembrane helices identified by TMHMM2.0. Further support given to product function. No specific characterisation has been carried out yet. Thus%2Cputative kept within product function. Functional classification - Central intermediary metabolism -General;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0014c;product=putative integral membrane protein;protein_id=CAL34195.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	19386	19445	.	-	.	ID=id-Cj0014c;Note=3 probable transmembrane helices predicted for Cj0014c by TMHMM2.0 at aa 12-34%2C 76-98 and 111-130;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0014c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	19482	19550	.	-	.	ID=id-Cj0014c;Note=3 probable transmembrane helices predicted for Cj0014c by TMHMM2.0 at aa 12-34%2C 76-98 and 111-130;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0014c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	19674	19742	.	-	.	ID=id-Cj0014c;Note=3 probable transmembrane helices predicted for Cj0014c by TMHMM2.0 at aa 12-34%2C 76-98 and 111-130;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0014c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	19296	19730	.	-	.	ID=id-Cj0014c-2;Note=HMMPfam hit to PF07274%2C Protein of unknown function (DUF1440)%2C score 1.1e-96;gbkey=misc_feature;inference=protein motif:Pfam:PF07274;locus_tag=Cj0014c
gi|15791399|ref|NC_002163.1|	EMBL	gene	19867	21093	.	-	.	ID=gene-Cj0015c;Name=Cj0015c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0015c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	19867	21093	.	-	0	ID=cds-CAL34196.1;Parent=gene-Cj0015c;Dbxref=EnsemblGenomes-Gn:Cj0015c,EnsemblGenomes-Tr:CAL34196,InterPro:IPR006674,UniProtKB/TrEMBL:Q0PCB0,NCBI_GP:CAL34196.1;Name=CAL34196.1;Note=Original (2000) note: Cj0015c%2C unknown%2C len: 408 aa%3B 35.4%25 identity to HP0711%3B~Updated (2006) note: Literature search identified paper (PMID:15647906) giving potential clues to product functionality. Functional classification - Conserved hypothetical proteins%3B~PMID:15647906;gbkey=CDS;locus_tag=Cj0015c;product=hypothetical protein Cj0015c;protein_id=CAL34196.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	21159	21833	.	+	.	ID=gene-Cj0016;Name=Cj0016;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0016
gi|15791399|ref|NC_002163.1|	EMBL	CDS	21159	21833	.	+	0	ID=cds-CAL34197.1;Parent=gene-Cj0016;Dbxref=EnsemblGenomes-Gn:Cj0016,EnsemblGenomes-Tr:CAL34197,GOA:P0C634,InterPro:IPR014729,InterPro:IPR018317,NCBI_GP:CAL34197.1;Name=CAL34197.1;Note=Original (2000) note: Cj0016%2C possible transcriptional regulatory protein%2C len: 224 aa%3B similar to many hypothetical proteins and to TR:Q52925 (EMBL:Z50189) Rhizobium meliloti succinoglycan biosynthesis regulator exsB (234 aa)%2C fasta scores%3B opt: 284 z-score: 395.5 E(): 9e-15%2C 33.5%25 identity in 191 aa overlap. 33.9%25 identity to HP0639 conserved hypothetical protein%3B~Updated (2006) note: Pfam domain PF06508 ExsB identified within CDS. Further support given to product function. Characterisation work carried out within Pseudomonas aeruginosa%2C however%2C identity scores were not acceptable. Thus%2C putative kept within product function. Functional classification - Broad regulatory functions%3B~PMID:9045825%2C PMID:8544814;gbkey=CDS;inference=protein motif:Pfam:PF06508;locus_tag=Cj0016;product=putative transcriptional regulatory protein;protein_id=CAL34197.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	21369	21593	.	+	.	ID=id-Cj0016;Note=HMMPfam hit to PF06508%2C ExsB%2C score 4.4e-41;gbkey=misc_feature;inference=protein motif:Pfam:PF06508;locus_tag=Cj0016
gi|15791399|ref|NC_002163.1|	EMBL	gene	21854	23380	.	-	.	ID=gene-Cj0017c;Name=dsbI;gbkey=Gene;gene=dsbI;gene_biotype=protein_coding;locus_tag=Cj0017c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	21854	23380	.	-	0	ID=cds-CAL34198.1;Parent=gene-Cj0017c;Dbxref=EnsemblGenomes-Gn:Cj0017c,EnsemblGenomes-Tr:CAL34198,GOA:Q0PCA8,InterPro:IPR003752,InterPro:IPR023380,UniProtKB/TrEMBL:Q0PCA8,NCBI_GP:CAL34198.1;Name=CAL34198.1;Note=Original (2000) note: Cj0017c%2C probable ATP/GTP binding protein%2C len: 508 aa%3B 37.4%25 identity to HP0595 hypothetical protein. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF02600 Disulfide bond formation protein DsbB identified within CDS. Gram negative bacterial cells have disulfide bond formation occuring in the oxidative environment of the periplasm and are catalysed by Dsb (disulfide bond) proteins found in the periplasm and in the inner membrane. Supporting paper (PMID:15632440) demonstrates via deletion and complementation that Cj0017c is part of the DsbB family and has been designated as dsbI. There is also strong evidence that Cj0017c and upstream ORF Cj0018c are co-transcribed (PMID:15632440). This information along with motif identification has led to a new product function designation. In addition%2C this coding sequence has 100%25 amino acid identity with DsbI from C. jejuni 81-176 (CJJ81-176_0044). Characterisation paper within Campylobacter jejuni has led to putative being removed from product function. Functional classification -Synthesis and modification of macromolecules - Protein translation and modification%3B~PMID:15632440;gbkey=CDS;gene=dsbI;inference=protein motif:Prosite:PS00017;locus_tag=Cj0017c;product=disulphide bond formation protein;protein_id=CAL34198.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	22853	22921	.	-	.	ID=id-Cj0017c;Note=5 probable transmembrane helices predicted for Cj0017c by TMHMM2.0 at aa 13-35%2C 50-67%2C 72-91%2C 111-133 and 154-176;gbkey=misc_feature;gene=dsbI;inference=protein motif:TMHMM:2.0;locus_tag=Cj0017c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	22982	23050	.	-	.	ID=id-Cj0017c;Note=5 probable transmembrane helices predicted for Cj0017c by TMHMM2.0 at aa 13-35%2C 50-67%2C 72-91%2C 111-133 and 154-176;gbkey=misc_feature;gene=dsbI;inference=protein motif:TMHMM:2.0;locus_tag=Cj0017c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	23108	23167	.	-	.	ID=id-Cj0017c;Note=5 probable transmembrane helices predicted for Cj0017c by TMHMM2.0 at aa 13-35%2C 50-67%2C 72-91%2C 111-133 and 154-176;gbkey=misc_feature;gene=dsbI;inference=protein motif:TMHMM:2.0;locus_tag=Cj0017c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	23180	23233	.	-	.	ID=id-Cj0017c;Note=5 probable transmembrane helices predicted for Cj0017c by TMHMM2.0 at aa 13-35%2C 50-67%2C 72-91%2C 111-133 and 154-176;gbkey=misc_feature;gene=dsbI;inference=protein motif:TMHMM:2.0;locus_tag=Cj0017c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	23276	23344	.	-	.	ID=id-Cj0017c;Note=5 probable transmembrane helices predicted for Cj0017c by TMHMM2.0 at aa 13-35%2C 50-67%2C 72-91%2C 111-133 and 154-176;gbkey=misc_feature;gene=dsbI;inference=protein motif:TMHMM:2.0;locus_tag=Cj0017c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	22082	22105	.	-	.	ID=id-Cj0017c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=dsbI;inference=protein motif:Prosite:PS00017;locus_tag=Cj0017c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	22862	23365	.	-	.	ID=id-Cj0017c-3;Note=HMMPfam hit to PF02600%2C Disulfide bond formation protein DsbB%2C score 1.9e-17;gbkey=misc_feature;gene=dsbI;inference=protein motif:Pfam:PF02600;locus_tag=Cj0017c
gi|15791399|ref|NC_002163.1|	EMBL	gene	23392	23559	.	-	.	ID=gene-Cj0018c;Name=dba;gbkey=Gene;gene=dba;gene_biotype=protein_coding;locus_tag=Cj0018c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	23392	23559	.	-	0	ID=cds-CAL34199.1;Parent=gene-Cj0018c;Dbxref=EnsemblGenomes-Gn:Cj0018c,EnsemblGenomes-Tr:CAL34199,UniProtKB/TrEMBL:Q0PCA7,NCBI_GP:CAL34199.1;Name=CAL34199.1;Note=Original (2000) note: Cj0018c%2C small hydrophobic protein%2C len: 55 aa%3B similar to TR:E1314390 (EMBL:AL031184) small hydrophobic protein SC2A11.18 from Streptomyces coelicolor (55 aa)%2C fasta scores%3B opt: 72 z-score: 141.4 E(): 1.3%2C 32.7%25 identity in 49 aa overlap. 49.1%25 identity to HP0594 hypothetical protein%3B~Updated (2006) note: Gram negative bacterial cells have disulfide bond formation occuring in the oxidative environment of the periplasm and are catalysed by Dsb (disulfide bond) proteins found in the periplasm and in the inner membrance. Supporting paper (PMID:15632440) speculates Dba has a supportive role as dba is co-transcribed with dsbI. This information has led to a new product function designation. Dba has 100%25 amino acid identity with Dba from 81-176 (CJJ81176_0045). Characterisation paper within Campylobacter jejuni has led to putative being removed from product function. Functional classification - Synthesis and modification of macromolecules - Protein translation and modification%3B~PMID:15632440;gbkey=CDS;gene=dba;locus_tag=Cj0018c;product=disulphide bond formation protein;protein_id=CAL34199.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	23428	23487	.	-	.	ID=id-Cj0018c;Note=1 probable transmembrane helix predicted for Cj0018c by TMHMM2.0 at aa 25-44;gbkey=misc_feature;gene=dba;inference=protein motif:TMHMM:2.0;locus_tag=Cj0018c
gi|15791399|ref|NC_002163.1|	EMBL	gene	23665	25443	.	-	.	ID=gene-Cj0019c;Name=Cj0019c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0019c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	23665	25443	.	-	0	ID=cds-CAL34200.1;Parent=gene-Cj0019c;Dbxref=EnsemblGenomes-Gn:Cj0019c,EnsemblGenomes-Tr:CAL34200,GOA:Q0PCA6,InterPro:IPR003660,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:Q0PCA6,NCBI_GP:CAL34200.1;Name=CAL34200.1;Note=Original (2000) note: Cj0019c%2C probable MCP-domain signal transduction protein%2C len: 592 aa%3B similar to other proteins containing the MCP domain e.g. HLYB_VIBCH hemolysin secretion protein precursor (548 aa)%2C fasta scores%3B opt: 418 z-score: 492.5 E(): 3.5e-20%2C 22.7%25 identity in 565 aa overlap%2C and AER_ECOLI aerotaxis receptor (506 aa)%2C fasta scores%3B opt: 299 z-score: 391.2 E(): 1.6e-14%2C 25.5%25 identity in 357 aa overlap. 27.5%25 identity to HP0103. Contains N-terminal signal sequence and transmembrane anchor around aa 250. Also contains Pfam match to entry PF00015 MCPsignal%2C Methyl-accepting chemotaxis protein (MCP) signaling domain%2C score 104.90%2CE-value 1.7e-28%3B~Updated (2006) note: Pfam domain PF00672 HAMP domain identified within CDS. Two probable transmembrace helices identified by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores has yet been carried out. Thus%2Cputative kept within product function. Functional classification - Signal transduction;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0019c;product=putative MCP-domain signal transduction protein;protein_id=CAL34200.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	24661	24729	.	-	.	ID=id-Cj0019c;Note=2 probable transmembrane helices predicted for Cj0019c by TMHMM2.0 at aa 10-32 and 239-261;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0019c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	25348	25416	.	-	.	ID=id-Cj0019c;Note=2 probable transmembrane helices predicted for Cj0019c by TMHMM2.0 at aa 10-32 and 239-261;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0019c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	23668	24375	.	-	.	ID=id-Cj0019c-2;Note=HMMPfam hit to PF00015%2C Methyl-accepting chemotaxis protein (MCP) s%2C score 5.5e-10;gbkey=misc_feature;inference=protein motif:Pfam:PF00015;locus_tag=Cj0019c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	24505	24720	.	-	.	ID=id-Cj0019c-3;Note=HMMPfam hit to PF00672%2C HAMP domain%2C score 1.8e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF00672;locus_tag=Cj0019c
gi|15791399|ref|NC_002163.1|	EMBL	gene	25433	26347	.	-	.	ID=gene-Cj0020c;Name=Cj0020c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0020c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	25433	26347	.	-	0	ID=cds-CAL34201.1;Parent=gene-Cj0020c;Dbxref=EnsemblGenomes-Gn:Cj0020c,EnsemblGenomes-Tr:CAL34201,GOA:Q0PCA5,InterPro:IPR003088,InterPro:IPR004852,InterPro:IPR009056,InterPro:IPR026259,UniProtKB/TrEMBL:Q0PCA5,NCBI_GP:CAL34201.1;Name=CAL34201.1;Note=Original (2000) note: Cj0020c%2C probable cytochrome C551 peroxidase%2C len: 304 aa%3B similar to CCPR_PSEAE cytochrome C551 peroxidase precursor (EC 1.11.1.5) (346 aa)%2C fasta scores%3B opt: 775 z-score: 1167.7 E(): 0%2C 42.3%25 identity in 298 aa overlap. No Hp ortholog. Contains 2x PS00190 Cytochrome c family heme-binding site signature and probable N-terminal signal sequence%3B~Updated (2006) note: Characterisation has been carried out within Pseudomonas aeruginosa with acceptable identity score. Appropriate motifs also identified. Putative not added to product function. Functional classification - Cell processes - Detoxification%3B~PMID:7781769%2C PMID:8591033%2C PMID:1657179;gbkey=CDS;inference=protein motif:Prosite:PS00190;locus_tag=Cj0020c;product=cytochrome C551 peroxidase;protein_id=CAL34201.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	25454	25786	.	-	.	ID=id-Cj0020c;Note=HMMPfam hit to PF00034%2C Cytochrome c%2C score 0.0083;gbkey=misc_feature;inference=protein motif:Pfam:PF00034;locus_tag=Cj0020c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	25736	25753	.	-	.	ID=id-Cj0020c-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0020c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	25799	26311	.	-	.	ID=id-Cj0020c-3;Note=HMMPfam hit to PF03150%2C Di-haem cytochrome c peroxidase%2C score 3.8e-69;gbkey=misc_feature;inference=protein motif:Pfam:PF03150;locus_tag=Cj0020c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	26165	26182	.	-	.	ID=id-Cj0020c-4;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0020c
gi|15791399|ref|NC_002163.1|	EMBL	gene	26411	27289	.	-	.	ID=gene-Cj0021c;Name=Cj0021c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0021c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	26411	27289	.	-	0	ID=cds-CAL34202.1;Parent=gene-Cj0021c;Dbxref=EnsemblGenomes-Gn:Cj0021c,EnsemblGenomes-Tr:CAL34202,GOA:Q0PCA4,InterPro:IPR002529,InterPro:IPR011234,UniProtKB/TrEMBL:Q0PCA4,NCBI_GP:CAL34202.1;Name=CAL34202.1;Note=Original (2000) note: Cj0021c%2C unknown%2C len: 292 aa%3B similar to hypothetical proteins e.g. TR:O06724 (EMBL:Z99109) B. subtilis yisK (301 aa)%2C fasta scores%3B opt: 665 z-score: 1018.0 E(): 0%2C 43.1%25 identity in 255 aa overlap%2C and to C-terminal half of HPCE_ECOLI 2-hydroxyhepta-2%2C4-diene-1%2C7-dioate isomeraase/5-carboxymethyl-2-oxo-hex-3-ene-1%2C7-dioate decarboxylase (405 aa)%2C fasta scores%3B opt: 328 z-score: 381.2 E(): 5.6e-14%2C 31.2%25 identity in 199 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01557 Fumarylacetoacetate (FAA) hydrolase family identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity score has been carried out yet. Thus%2C putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF01557;locus_tag=Cj0021c;product=putative fumarylacetoacetate (FAA) hydrolase family protein;protein_id=CAL34202.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	26504	27007	.	-	.	ID=id-Cj0021c;Note=HMMPfam hit to PF01557%2C Fumarylacetoacetate (FAA) hydrolase fam%2C score 1.4e-44;gbkey=misc_feature;inference=protein motif:Pfam:PF01557;locus_tag=Cj0021c
gi|15791399|ref|NC_002163.1|	EMBL	gene	27402	28304	.	-	.	ID=gene-Cj0022c;Name=Cj0022c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0022c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	27402	28304	.	-	0	ID=cds-CAL34203.1;Parent=gene-Cj0022c;Dbxref=EnsemblGenomes-Gn:Cj0022c,EnsemblGenomes-Tr:CAL34203,GOA:Q0PCA3,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR020103,UniProtKB/TrEMBL:Q0PCA3,NCBI_GP:CAL34203.1;Name=CAL34203.1;Note=Original (2000) note: Cj0022c%2C possible ribosomal pseudouridine synthase%2C len: 300 aa%3B similar to e.g. RLUD_ECOLI ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) (326 aa)%2C fasta scores%3B opt: 344 z-score: 412.1 E(): 1.2e-15%2C 29.6%25 identity in 243 aa overlap. 41.1%25 identity to HP0347. Contains PS01129 Hypothetical yabO/yceC/sfhB family signature and Pfam match to entry PF00849 YABO%2C Hypothetical yabO/yceC/sfhB family%2C score 182.90%2C E-value 5e-51. Also similar to Cj1280c (31.0%25 identity) and Cj0708 (28.0%25 identity)%3B~Updated (2006) note: Characterisation has been carried out within Escherichia coli%2C however%2C identity score was marginal. Pfam domain PF00849 RNA pseudouridylate synthase was identified within CDS. This Pfam motif has been updated from the previous designation. Further support given to product function. Putative kept within product function. Functional classification -Synthesis and modification of macromolecules - Ribosome maturation and modification%3B~PMID:11453071%2C PMID:11087118%2C PMID:9814761%2CPMID:14501142;gbkey=CDS;inference=protein motif:Prosite:PS01129;locus_tag=Cj0022c;product=putative ribosomal pseudouridine synthase;protein_id=CAL34203.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	27624	28076	.	-	.	ID=id-Cj0022c;Note=HMMPfam hit to PF00849%2C RNA pseudouridylate synthase%2C score 7.1e-43;gbkey=misc_feature;inference=protein motif:Pfam:PF00849;locus_tag=Cj0022c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	27918	27962	.	-	.	ID=id-Cj0022c-2;Note=PS01129 Rlu family of pseudouridine synthase signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01129;locus_tag=Cj0022c
gi|15791399|ref|NC_002163.1|	EMBL	gene	28382	29710	.	+	.	ID=gene-Cj0023;Name=purB;gbkey=Gene;gene=purB;gene_biotype=protein_coding;locus_tag=Cj0023
gi|15791399|ref|NC_002163.1|	EMBL	CDS	28382	29710	.	+	0	ID=cds-CAL34204.1;Parent=gene-Cj0023;Dbxref=EnsemblGenomes-Gn:Cj0023,EnsemblGenomes-Tr:CAL34204,GOA:Q0PCA2,InterPro:IPR000362,InterPro:IPR004769,InterPro:IPR008948,InterPro:IPR019468,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,UniProtKB/TrEMBL:Q0PCA2,NCBI_GP:CAL34204.1;Name=CAL34204.1;Note=Original (2000) note: Cj0023%2C purB%2C probable adenylosuccinate lyase%2C len: 442 aa%3B similar to e.g. PUR8_BACSU adenylosuccinate lyase (EC 4.3.2.2) (431 aa)%2Cfasta scores%3B opt: 1369 z-score: 2264.2 E(): 0%2C 49.9%25 identity in 439 aa overlap. 67.9%25 identity to HP1112. Contains PS00163 Fumarate lyases signature and Pfam match to entry PF00206 lyase_1%2C Lyases%2C score 199.60%2C E-value 4.7e-56%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity scores. Thus%2C putative not added to product function. Functional classification -Purine ribonucleotide biosynthesis%3B~PMID:1608947%2C PMID:10926519%2C PMID:3036807;gbkey=CDS;gene=purB;inference=protein motif:Prosite:PS00163;locus_tag=Cj0023;product=adenylosuccinate lyase;protein_id=CAL34204.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	28388	29239	.	+	.	ID=id-Cj0023;Note=HMMPfam hit to PF00206%2C Lyase%2C score 3.7e-45;gbkey=misc_feature;gene=purB;inference=protein motif:Pfam:PF00206;locus_tag=Cj0023
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	29048	29080	.	+	.	ID=id-Cj0023-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=purB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0023
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	29162	29191	.	+	.	ID=id-Cj0023-3;Note=PS00163 Fumarate lyases signature;gbkey=misc_feature;gene=purB;inference=protein motif:Prosite:PS00163;locus_tag=Cj0023
gi|15791399|ref|NC_002163.1|	EMBL	gene	29726	32095	.	+	.	ID=gene-Cj0024;Name=nrdA;gbkey=Gene;gene=nrdA;gene_biotype=protein_coding;locus_tag=Cj0024
gi|15791399|ref|NC_002163.1|	EMBL	CDS	29726	32095	.	+	0	ID=cds-CAL34205.1;Parent=gene-Cj0024;Dbxref=EnsemblGenomes-Gn:Cj0024,EnsemblGenomes-Tr:CAL34205,GOA:Q0PCA1,InterPro:IPR000788,InterPro:IPR005144,InterPro:IPR008926,InterPro:IPR013346,InterPro:IPR013509,UniProtKB/TrEMBL:Q0PCA1,NCBI_GP:CAL34205.1;Name=CAL34205.1;Note=Original (2000) note: Cj0024%2C nrdA%2Cribonucleoside-diphosphate reductase alpha chain%2C len: 789 aa%3B similar to e.g. RIR3_YEAST ribonucleoside-diphosphate reductase large chain 2 (869 aa)%2C fasta scores%3B opt: 909 z-score: 1663.2 E(): 0%2C 33.0%25 identity in 813 aa overlap%2Cand RIR1_ECOLI ribonucleoside-diphosphate reductase 1 alpha chain (EC 1.17.4.1) (761 aa)%2C fasta scores%3B opt: 795 z-score: 1160.2 E(): 0%2C 28.5%25 identity in 811 aa overlap. 68.9%25 identity to HP0680. Contains PS00089 Ribonucleotide reductase large subunit signature and 3x Pfam match to entry PF00317 ribonucleo_red%2C Ribonucleotide reductase%2Cscores 371.50%2C E-value 5.1e-139%2C 133.70%2C E-value 4.5e-50 and 44.10%2C E-value 1.5e-16%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli. Identity scores were marginal. Appropriate motifs were identified. Putative not added to product function. Functional classification -2'-deoxyribonucleotide biosynthesis%3B~PMID:6087316%2C PMID:3098730;gbkey=CDS;gene=nrdA;inference=protein motif:Prosite:PS00089;locus_tag=Cj0024;product=ribonucleoside-diphosphate reductase alpha chain;protein_id=CAL34205.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	29726	29995	.	+	.	ID=id-Cj0024;Note=HMMPfam hit to PF03477%2C ATP cone domain%2C score 6.2e-18;gbkey=misc_feature;gene=nrdA;inference=protein motif:Pfam:PF03477;locus_tag=Cj0024
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	30125	30355	.	+	.	ID=id-Cj0024-2;Note=HMMPfam hit to PF00317%2C Ribonucleotide reductase%2Call-alpha d%2C score 3.2e-35;gbkey=misc_feature;gene=nrdA;inference=protein motif:Pfam:PF00317;locus_tag=Cj0024
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	30359	32035	.	+	.	ID=id-Cj0024-3;Note=HMMPfam hit to PF02867%2C Ribonucleotide reductase%2Cbarrel doma%2C score 7.5e-129;gbkey=misc_feature;gene=nrdA;inference=protein motif:Pfam:PF02867;locus_tag=Cj0024
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	31637	31705	.	+	.	ID=id-Cj0024-4;Note=PS00089 Ribonucleotide reductase large subunit signature;gbkey=misc_feature;gene=nrdA;inference=protein motif:Prosite:PS00089;locus_tag=Cj0024
gi|15791399|ref|NC_002163.1|	EMBL	gene	32134	33519	.	-	.	ID=gene-Cj0025c;Name=Cj0025c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0025c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	32134	33519	.	-	0	ID=cds-CAL34206.1;Parent=gene-Cj0025c;Dbxref=EnsemblGenomes-Gn:Cj0025c,EnsemblGenomes-Tr:CAL34206,GOA:Q0PCA0,InterPro:IPR001991,UniProtKB/TrEMBL:Q0PCA0,NCBI_GP:CAL34206.1;Name=CAL34206.1;Note=Original (2000) note: Cj0025c%2C probable transmembrane symporter (possibly glutamate)%2C len: 461 aa%3B similar to many e.g. YB54_HAEIN hypothetical symporter HI1154 (440 aa)%2C fasta scores%3B opt: 650 z-score: 890.6 E(): 0%2C 33.7%25 identity in 454 aa overlap%2C and TR:Q46202 (EMBL:X86516) Clostridium perfringens gluT-R gene (fragment) (132 aa)%2C fasta scores%3B opt: 406 z-score: 569.0 E(): 1.9e-24%2C 49.6%25 identity in 119 aa overlap. No Hp match. Contains Pfam match to entry PF00375 SDF%2CSodium:dicarboxylate symporter family%2C score 142.20%2CE-value 9.4e-39%3B~Updated (2006) note: Pfam domain PF00375 Sodium:dicarboxylate symporter family identified within CDS. Eleven probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity score has been carried out yet. Thus%2Cputative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;product=putative sodium:dicarboxylate family transmembrane symporter;protein_id=CAL34206.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	32251	32319	.	-	.	ID=id-Cj0025c;Note=11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29%2C 41-63%2C 83-105%2C 126-148%2C182-204%2C 225-247%2C 267-289%2C 302-324%2C 339-361%2C 374-396 and 401-423;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;part=1/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	32332	32400	.	-	.	ID=id-Cj0025c;Note=11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29%2C 41-63%2C 83-105%2C 126-148%2C182-204%2C 225-247%2C 267-289%2C 302-324%2C 339-361%2C 374-396 and 401-423;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;part=2/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	32437	32505	.	-	.	ID=id-Cj0025c;Note=11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29%2C 41-63%2C 83-105%2C 126-148%2C182-204%2C 225-247%2C 267-289%2C 302-324%2C 339-361%2C 374-396 and 401-423;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;part=3/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	32548	32616	.	-	.	ID=id-Cj0025c;Note=11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29%2C 41-63%2C 83-105%2C 126-148%2C182-204%2C 225-247%2C 267-289%2C 302-324%2C 339-361%2C 374-396 and 401-423;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;part=4/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	32653	32721	.	-	.	ID=id-Cj0025c;Note=11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29%2C 41-63%2C 83-105%2C 126-148%2C182-204%2C 225-247%2C 267-289%2C 302-324%2C 339-361%2C 374-396 and 401-423;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;part=5/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	32779	32847	.	-	.	ID=id-Cj0025c;Note=11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29%2C 41-63%2C 83-105%2C 126-148%2C182-204%2C 225-247%2C 267-289%2C 302-324%2C 339-361%2C 374-396 and 401-423;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;part=6/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	32908	32976	.	-	.	ID=id-Cj0025c;Note=11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29%2C 41-63%2C 83-105%2C 126-148%2C182-204%2C 225-247%2C 267-289%2C 302-324%2C 339-361%2C 374-396 and 401-423;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;part=7/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	33076	33144	.	-	.	ID=id-Cj0025c;Note=11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29%2C 41-63%2C 83-105%2C 126-148%2C182-204%2C 225-247%2C 267-289%2C 302-324%2C 339-361%2C 374-396 and 401-423;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;part=8/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	33205	33273	.	-	.	ID=id-Cj0025c;Note=11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29%2C 41-63%2C 83-105%2C 126-148%2C182-204%2C 225-247%2C 267-289%2C 302-324%2C 339-361%2C 374-396 and 401-423;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;part=9/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	33331	33399	.	-	.	ID=id-Cj0025c;Note=11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29%2C 41-63%2C 83-105%2C 126-148%2C182-204%2C 225-247%2C 267-289%2C 302-324%2C 339-361%2C 374-396 and 401-423;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;part=10/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	33433	33492	.	-	.	ID=id-Cj0025c;Note=11 probable transmembrane helices predicted for Cj0025c by TMHMM2.0 at aa 10-29%2C 41-63%2C 83-105%2C 126-148%2C182-204%2C 225-247%2C 267-289%2C 302-324%2C 339-361%2C 374-396 and 401-423;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0025c;part=11/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	32170	33399	.	-	.	ID=id-Cj0025c-2;Note=HMMPfam hit to PF00375%2C Sodium:dicarboxylate symporter family%2C score 2.4e-40;gbkey=misc_feature;inference=protein motif:Pfam:PF00375;locus_tag=Cj0025c
gi|15791399|ref|NC_002163.1|	EMBL	gene	33639	34262	.	-	.	ID=gene-Cj0026c;Name=thyX;gbkey=Gene;gene=thyX;gene_biotype=protein_coding;locus_tag=Cj0026c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	33639	34262	.	-	0	ID=cds-CAL34207.1;Parent=gene-Cj0026c;Dbxref=EnsemblGenomes-Gn:Cj0026c,EnsemblGenomes-Tr:CAL34207,GOA:Q9PJ85,InterPro:IPR003669,NCBI_GP:CAL34207.1;Name=CAL34207.1;Note=Original (2000) note: Cj0026c%2C unknown%2C len: 207 aa%3B similar to hypothetical proteins e.g. YDAP_BRELA hypothetical 28.0 kd protein (250 aa)%2C fasta scores%3B opt: 221 z-score: 388.7 E(): 2.1e-14%2C 27.4%25 identity in 190 aa overlap. 56.3%25 identity to HP1533%3B~Updated (2006) note: Pfam domain PF02511 Thymidylate synthase complementing protein identified within CDS. Characterisation work has been carried out within Campylobacter jejuni and Helicobacter pylori. Two forms of microbial thymidylate synthase are known: ThyA and ThyX . This family describes ThyX%2C a homotetrameric flavoprotein. Both enzymes convert dUMP to dTMP. Under oxygen-limiting conditions%2C ThyX can complement a thyA mutation (PMID:9665876%2C PMID:15046578). Functional classification - Misc%3B~PMID:12423760%2C PMID:9665876%2C PMID:15046578%2CPMID:12029065;gbkey=CDS;gene=thyX;inference=protein motif:Pfam:PF02511;locus_tag=Cj0026c;product=thymidylate synthase;protein_id=CAL34207.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	33663	34262	.	-	.	ID=id-Cj0026c;Note=HMMPfam hit to PF02511%2C Thymidylate synthase complementing protein%2C score 6.3e-43;gbkey=misc_feature;gene=thyX;inference=protein motif:Pfam:PF02511;locus_tag=Cj0026c
gi|15791399|ref|NC_002163.1|	EMBL	gene	34382	36013	.	+	.	ID=gene-Cj0027;Name=pyrG;gbkey=Gene;gene=pyrG;gene_biotype=protein_coding;locus_tag=Cj0027
gi|15791399|ref|NC_002163.1|	EMBL	CDS	34382	36013	.	+	0	ID=cds-CAL34208.1;Parent=gene-Cj0027;Dbxref=EnsemblGenomes-Gn:Cj0027,EnsemblGenomes-Tr:CAL34208,GOA:Q9PJ84,InterPro:IPR004468,InterPro:IPR017456,InterPro:IPR017926,InterPro:IPR027417,InterPro:IPR029062,NCBI_GP:CAL34208.1;Name=CAL34208.1;Note=Original (2000) note: Cj0027%2C pyrG%2C CTP synthase%2Clen: 543 aa%3B highly similar to many e.g. PYRG_ECOLI CTP synthase (EC 6.3.4.2) (544 aa)%2C fasta scores%3B opt: 1892 z-score: 2236.1 E(): 0%2C 52.6%25 identity in 540 aa overlap. 62.6%25 identity to HP0349. Contains PS00442 Glutamine amidotransferases class-I active site%3B~Updated (2006) note: Pfam domain PF06418 CTP synthase N-terminus and PF00117 Glutamine amidotransferase class-I were identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not added to product function. Functional classification -Pyrimidine ribonucleotide biosynthesis%3B~PMID:3298209%2C PMID:8385490%2C PMID:11336655;gbkey=CDS;gene=pyrG;inference=protein motif:Prosite:PS00442;locus_tag=Cj0027;product=CTP synthase;protein_id=CAL34208.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	34391	35218	.	+	.	ID=id-Cj0027;Note=HMMPfam hit to PF06418%2C CTP synthase N-terminus%2Cscore 4.3e-204;gbkey=misc_feature;gene=pyrG;inference=protein motif:Pfam:PF06418;locus_tag=Cj0027
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	34400	34468	.	+	.	ID=id-Cj0027-2;Note=1 probable transmembrane helix predicted for Cj0027 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;gene=pyrG;inference=protein motif:TMHMM:2.0;locus_tag=Cj0027
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	35282	35989	.	+	.	ID=id-Cj0027-3;Note=HMMPfam hit to PF00117%2C Glutamine amidotransferase class-I%2C score 3.5e-57;gbkey=misc_feature;gene=pyrG;inference=protein motif:Pfam:PF00117;locus_tag=Cj0027
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	35507	35542	.	+	.	ID=id-Cj0027-4;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=pyrG;inference=protein motif:Prosite:PS00442;locus_tag=Cj0027
gi|15791399|ref|NC_002163.1|	EMBL	gene	36000	37571	.	+	.	ID=gene-Cj0028;Name=recJ;gbkey=Gene;gene=recJ;gene_biotype=protein_coding;locus_tag=Cj0028
gi|15791399|ref|NC_002163.1|	EMBL	CDS	36000	37571	.	+	0	ID=cds-CAL34209.1;Parent=gene-Cj0028;Dbxref=EnsemblGenomes-Gn:Cj0028,EnsemblGenomes-Tr:CAL34209,GOA:Q0PC97,InterPro:IPR001667,InterPro:IPR003156,InterPro:IPR004610,UniProtKB/TrEMBL:Q0PC97,NCBI_GP:CAL34209.1;Name=CAL34209.1;Note=Original (2000) note: Cj0028%2C recJ%2C probable single-stranded-DNA-specific exonuclease%2C len: 523 aa%3B similar to e.g. RECJ_ECOLI single-stranded-DNA-specific exonuclease (EC 3.1.-.-) (577 aa)%2C fasta scores%3B opt: 385 z-score: 861.6 E(): 0%2C 29.8%25 identity in 526 aa overlap. 39.0%25 identity to HP0348%3B~Updated (2006) note: Pfam domain HMMPfam PF01368 DHH family and HMMPfam PF02272 DHHA1 domain were identified within CDS. Further support given to product function. Characterised within Escherichia coli%2C however%2Cmarginal identity score was obtained. Putative kept within product function. Functional classification - Synthesis and modification of macromolecules - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:2649886;gbkey=CDS;gene=recJ;inference=protein motif:Pfam:PF02272;locus_tag=Cj0028;product=putative single-stranded-DNA-specific exonuclease;protein_id=CAL34209.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	36138	36599	.	+	.	ID=id-Cj0028;Note=HMMPfam hit to PF01368%2C DHH family%2C score 1e-48;gbkey=misc_feature;gene=recJ;inference=protein motif:Pfam:PF01368;locus_tag=Cj0028
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	37011	37205	.	+	.	ID=id-Cj0028-2;Note=HMMPfam hit to PF02272%2C DHHA1 domain%2C score 1.5e-16;gbkey=misc_feature;gene=recJ;inference=protein motif:Pfam:PF02272;locus_tag=Cj0028
gi|15791399|ref|NC_002163.1|	EMBL	gene	37667	38662	.	+	.	ID=gene-Cj0029;Name=ansA;gbkey=Gene;gene=ansA;gene_biotype=protein_coding;locus_tag=Cj0029
gi|15791399|ref|NC_002163.1|	EMBL	CDS	37667	38662	.	+	0	ID=cds-CAL34210.1;Parent=gene-Cj0029;Dbxref=EnsemblGenomes-Gn:Cj0029,EnsemblGenomes-Tr:CAL34210,GOA:Q0PC96,InterPro:IPR004550,InterPro:IPR006034,InterPro:IPR020827,InterPro:IPR027473,InterPro:IPR027474,InterPro:IPR027475,PDB:3NXK,UniProtKB/TrEMBL:Q0PC96,NCBI_GP:CAL34210.1;Name=CAL34210.1;Note=Original (2000) note: Cj0029%2C ansA%2C probable cytoplasmic L-asparaginase%2C len: 331 aa%3B similar to many e.g. ASG2_ECOLI L-asparaginase II precursor (EC 3.5.1.1) (348 aa)%2C fasta scores%3B opt: 1044 z-score: 1510.6 E(): 0%2C52.0%25 identity in 327 aa overlap%2C but with no signal sequence. 45.8%25 identity to HP0723. Contains PS00144 and PS00917 Asparaginase/glutaminase active site signatures 1 and 2 and Pfam match to entry PF00710 Asparaginase%2CAsparaginase%2C score 449.90%2C E-value 2.2e-131%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Degradation - Amino acids%3B~PMID:2407723%2C PMID:1287659%2C PMID:8706862;gbkey=CDS;gene=ansA;inference=protein motif:Prosite:PS00917;locus_tag=Cj0029;product=cytoplasmic L-asparaginase;protein_id=CAL34210.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	37694	37720	.	+	.	ID=id-Cj0029;Note=PS00144 Asparaginase / glutaminase active site signature 1;gbkey=misc_feature;gene=ansA;inference=protein motif:Prosite:PS00144;locus_tag=Cj0029
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	37712	38644	.	+	.	ID=id-Cj0029-2;Note=HMMPfam hit to PF00710%2C Asparaginase%2C score 1.5e-132;gbkey=misc_feature;gene=ansA;inference=protein motif:Pfam:PF00710;locus_tag=Cj0029
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	37928	37960	.	+	.	ID=id-Cj0029-3;Note=PS00917 Asparaginase / glutaminase active site signature 2;gbkey=misc_feature;gene=ansA;inference=protein motif:Prosite:PS00917;locus_tag=Cj0029
gi|15791399|ref|NC_002163.1|	EMBL	rRNA	39249	40761	.	+	.	ID=rna-gi|15791399|ref|NC_002163.1|:39249..40761;gbkey=rRNA;product=16S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	39249	40761	.	+	.	ID=exon-gi|15791399|ref|NC_002163.1|:39249..40761-1;Parent=rna-gi|15791399|ref|NC_002163.1|:39249..40761;gbkey=rRNA;product=16S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	gene	40866	40941	.	+	.	ID=gene-tRNA-Ala;Name=tRNA-Ala;gbkey=Gene;gene=tRNA-Ala;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	40866	40941	.	+	.	ID=rna-tRNA-Ala;Parent=gene-tRNA-Ala;Note=tRNA Ala anticodon TGC%2C Cove score 92.14;gbkey=tRNA;gene=tRNA-Ala;product=tRNA-Ala
gi|15791399|ref|NC_002163.1|	EMBL	exon	40866	40941	.	+	.	ID=exon-tRNA-Ala-1;Parent=rna-tRNA-Ala;Note=tRNA Ala anticodon TGC%2C Cove score 92.14;gbkey=tRNA;gene=tRNA-Ala;product=tRNA-Ala
gi|15791399|ref|NC_002163.1|	EMBL	gene	40950	41026	.	+	.	ID=gene-tRNA-Ile;Name=tRNA-Ile;gbkey=Gene;gene=tRNA-Ile;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	40950	41026	.	+	.	ID=rna-tRNA-Ile;Parent=gene-tRNA-Ile;Note=tRNA Ile anticodon GAT%2C Cove score 93.24;gbkey=tRNA;gene=tRNA-Ile;product=tRNA-Ile
gi|15791399|ref|NC_002163.1|	EMBL	exon	40950	41026	.	+	.	ID=exon-tRNA-Ile-1;Parent=rna-tRNA-Ile;Note=tRNA Ile anticodon GAT%2C Cove score 93.24;gbkey=tRNA;gene=tRNA-Ile;product=tRNA-Ile
gi|15791399|ref|NC_002163.1|	EMBL	rRNA	41568	44457	.	+	.	ID=rna-gi|15791399|ref|NC_002163.1|:41568..44457;gbkey=rRNA;product=23S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	41568	44457	.	+	.	ID=exon-gi|15791399|ref|NC_002163.1|:41568..44457-1;Parent=rna-gi|15791399|ref|NC_002163.1|:41568..44457;gbkey=rRNA;product=23S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	rRNA	44741	44860	.	+	.	ID=rna-gi|15791399|ref|NC_002163.1|:44741..44860;gbkey=rRNA;product=5S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	44741	44860	.	+	.	ID=exon-gi|15791399|ref|NC_002163.1|:44741..44860-1;Parent=rna-gi|15791399|ref|NC_002163.1|:44741..44860;gbkey=rRNA;product=5S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	gene	44966	46363	.	+	.	ID=gene-Cj0030;Name=Cj0030;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0030
gi|15791399|ref|NC_002163.1|	EMBL	CDS	44966	46363	.	+	0	ID=cds-CAL34211.1;Parent=gene-Cj0030;Dbxref=EnsemblGenomes-Gn:Cj0030,EnsemblGenomes-Tr:CAL34211,InterPro:IPR029470,UniProtKB/TrEMBL:Q0PC95,NCBI_GP:CAL34211.1;Name=CAL34211.1;Note=Original (2000) note: Cj0030%2C unknown%2C len: 465 aa. No Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0030;product=hypothetical protein Cj0030;protein_id=CAL34211.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	46424	49000	.	+	.	ID=gene-Cj0031;Name=Cj0031;gbkey=Gene;gene_biotype=protein_coding;is_ordered=true;locus_tag=Cj0031;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	49002	50156	.	+	.	ID=gene-Cj0031;Name=Cj0031;gbkey=Gene;gene_biotype=protein_coding;is_ordered=true;locus_tag=Cj0031;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	CDS	46424	49000	.	+	0	ID=cds-CAL34212.1;Parent=gene-Cj0031;Dbxref=EnsemblGenomes-Gn:Cj0031,EnsemblGenomes-Tr:CAL34212,GOA:Q0PC94,InterPro:IPR002052,InterPro:IPR002296,InterPro:IPR011639,InterPro:IPR025931,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PC94,NCBI_GP:CAL34212.1;Name=CAL34212.1;Note=Original (2000) note: Cj0031%2C probable DNA restriction/modification enzyme%2C N-terminal half%2C len: 867 aa%3B similar to N-terminus of T257_ECOLI type IIS restriction enzyme Eco57I (which contains an adenine-specific methyltransferase activity) (997 aa)%2Cfasta scores%3B opt: 126 z-score: 218.0 E(): 6.9e-05%2C 24.0%25 identity in 516 aa overlap. 40.9%25 identity to N-terminus of HP1517. Some similarity to N-terminus of Cj0690c (24.8%25 identity in 858 aa overlap). Contains PS00092 N-6 Adenine-specific DNA methylases signature. Note that there is a polymorphic poly-G tract at the C-terminus of this ORF with 8%2C 9%2C or 10 bases. G10 (the most common in our shotgun) causes a termination here%2C G9 causes a termination 6 aa earlier. G8 allows translation to continue into Cj0032%3B~Original (2000) note: Cj0032%2C probable DNA restriction/modification enzyme%2C C-terminal half%2C len: 867 aa%3B similar to C-terminus of MTB3_BACAR modification methylase BanIII (580 aa)%2C fasta scores%3B opt: 132 z-score: 220.8 E(): 4.9e-05%2C 24.6%25 identity in 402 aa overlap. 47.4%25 identity to C-terminus of HP1517. Note that there is a polymorphic poly-G tract at the N-terminus of this ORF with 8%2C 9%2C or 10 bases. G10 (the most common in our shotgun) or G9 will not allow translation into this ORF%2CG8 allows translation to continue from Cj0031. Alternative downstram start at 49059%3B~Updated (2006) note: Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave N-terminal and C-terminal portions as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Synthesis and modification of macromolecules - DNA replication%2Crestriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Prosite:PS00092;locus_tag=Cj0031;product=putative type IIS restriction/modification enzyme;protein_id=CAL34212.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	49002	50156	.	+	0	ID=cds-CAL34212.1;Parent=gene-Cj0031;Dbxref=EnsemblGenomes-Gn:Cj0031,EnsemblGenomes-Tr:CAL34212,GOA:Q0PC94,InterPro:IPR002052,InterPro:IPR002296,InterPro:IPR011639,InterPro:IPR025931,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PC94,NCBI_GP:CAL34212.1;Name=CAL34212.1;Note=Original (2000) note: Cj0031%2C probable DNA restriction/modification enzyme%2C N-terminal half%2C len: 867 aa%3B similar to N-terminus of T257_ECOLI type IIS restriction enzyme Eco57I (which contains an adenine-specific methyltransferase activity) (997 aa)%2Cfasta scores%3B opt: 126 z-score: 218.0 E(): 6.9e-05%2C 24.0%25 identity in 516 aa overlap. 40.9%25 identity to N-terminus of HP1517. Some similarity to N-terminus of Cj0690c (24.8%25 identity in 858 aa overlap). Contains PS00092 N-6 Adenine-specific DNA methylases signature. Note that there is a polymorphic poly-G tract at the C-terminus of this ORF with 8%2C 9%2C or 10 bases. G10 (the most common in our shotgun) causes a termination here%2C G9 causes a termination 6 aa earlier. G8 allows translation to continue into Cj0032%3B~Original (2000) note: Cj0032%2C probable DNA restriction/modification enzyme%2C C-terminal half%2C len: 867 aa%3B similar to C-terminus of MTB3_BACAR modification methylase BanIII (580 aa)%2C fasta scores%3B opt: 132 z-score: 220.8 E(): 4.9e-05%2C 24.6%25 identity in 402 aa overlap. 47.4%25 identity to C-terminus of HP1517. Note that there is a polymorphic poly-G tract at the N-terminus of this ORF with 8%2C 9%2C or 10 bases. G10 (the most common in our shotgun) or G9 will not allow translation into this ORF%2CG8 allows translation to continue from Cj0031. Alternative downstram start at 49059%3B~Updated (2006) note: Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave N-terminal and C-terminal portions as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Synthesis and modification of macromolecules - DNA replication%2Crestriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Prosite:PS00092;locus_tag=Cj0031;product=putative type IIS restriction/modification enzyme;protein_id=CAL34212.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	50156	51937	.	+	.	ID=gene-Cj0033;Name=Cj0033;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0033
gi|15791399|ref|NC_002163.1|	EMBL	CDS	50156	51937	.	+	0	ID=cds-CAL34213.1;Parent=gene-Cj0033;Dbxref=EnsemblGenomes-Gn:Cj0033,EnsemblGenomes-Tr:CAL34213,InterPro:IPR001646,UniProtKB/TrEMBL:Q0PC93,NCBI_GP:CAL34213.1;Name=CAL34213.1;Note=Original (2000) note: Cj0033%2C probable integral membrane protein%2C len: 593 aa%3B contains 6 possible transmembrane domains in C-terminal half. No Hp match. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj0033;product=putative integral membrane protein;protein_id=CAL34213.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	51266	51334	.	+	.	ID=id-Cj0033;Note=6 probable transmembrane helices predicted for Cj0033 by TMHMM2.0 at aa 371-393%2C 415-434%2C 467-489%2C494-513%2C 518-537 and 557-579;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0033;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	51398	51457	.	+	.	ID=id-Cj0033;Note=6 probable transmembrane helices predicted for Cj0033 by TMHMM2.0 at aa 371-393%2C 415-434%2C 467-489%2C494-513%2C 518-537 and 557-579;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0033;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	51554	51622	.	+	.	ID=id-Cj0033;Note=6 probable transmembrane helices predicted for Cj0033 by TMHMM2.0 at aa 371-393%2C 415-434%2C 467-489%2C494-513%2C 518-537 and 557-579;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0033;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	51635	51694	.	+	.	ID=id-Cj0033;Note=6 probable transmembrane helices predicted for Cj0033 by TMHMM2.0 at aa 371-393%2C 415-434%2C 467-489%2C494-513%2C 518-537 and 557-579;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0033;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	51707	51766	.	+	.	ID=id-Cj0033;Note=6 probable transmembrane helices predicted for Cj0033 by TMHMM2.0 at aa 371-393%2C 415-434%2C 467-489%2C494-513%2C 518-537 and 557-579;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0033;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	51824	51892	.	+	.	ID=id-Cj0033;Note=6 probable transmembrane helices predicted for Cj0033 by TMHMM2.0 at aa 371-393%2C 415-434%2C 467-489%2C494-513%2C 518-537 and 557-579;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0033;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	51410	51442	.	+	.	ID=id-Cj0033-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0033
gi|15791399|ref|NC_002163.1|	EMBL	gene	51967	52668	.	-	.	ID=gene-Cj0034c;Name=Cj0034c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0034c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	51967	52668	.	-	0	ID=cds-CAL34214.1;Parent=gene-Cj0034c;Dbxref=EnsemblGenomes-Gn:Cj0034c,EnsemblGenomes-Tr:CAL34214,InterPro:IPR007497,InterPro:IPR016907,UniProtKB/TrEMBL:Q0PC92,NCBI_GP:CAL34214.1;Name=CAL34214.1;Note=Original (2000) note: Cj0034c%2C probable periplasmic protein%2C len: 233 aa%3B similar to e.g. TR:O50817 (EMBL:AE000788) Borrelia burgdorferi conserved hypothetical protein BBK13 (238 aa)%2C fasta scores%3B opt: 306 z-score: 257.5 E(): 4.4e-07%2C 28.1%25 identity in 231 aa overlap. No Hp match. Contains possible N-terminal signal sequence. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0034c;product=putative periplasmic protein;protein_id=CAL34214.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	51973	52572	.	-	.	ID=id-Cj0034c;Note=HMMPfam hit to PF04402%2C Protein of unknown function (DUF541)%2C score 2.4e-60;gbkey=misc_feature;inference=protein motif:Pfam:PF04402;locus_tag=Cj0034c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	52600	52656	.	-	.	ID=id-Cj0034c-2;Note=1 probable transmembrane helix predicted for Cj0034c by TMHMM2.0 at aa 5-23;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0034c
gi|15791399|ref|NC_002163.1|	EMBL	gene	52665	53867	.	-	.	ID=gene-Cj0035c;Name=Cj0035c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0035c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	52665	53867	.	-	0	ID=cds-CAL34215.1;Parent=gene-Cj0035c;Dbxref=EnsemblGenomes-Gn:Cj0035c,EnsemblGenomes-Tr:CAL34215,GOA:Q0PC91,InterPro:IPR004812,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0PC91,NCBI_GP:CAL34215.1;Name=CAL34215.1;Note=Original (2000) note: Cj0035c%2C possible efflux protein%2C len: 400 aa%3B similar to many members of the bcr/cmlA subfamily of the major facilitator family e.g. BCR_ECOLI bicyclomycin resistance protein (396 aa)%2C fasta scores%3B opt: 717 z-score: 1046.3 E(): 0%2C 28.1%25 identity in 398 aa overlap. No Hp ortholog. Contains 12 possible transmembrane domains. Also similar to Cj1375 (25.5%25 identity in 373 aa overlap)%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily was identified within CDS. Further support given to product function. Some characterisation work within different bacteria%2C however%2C identity scores were marginal. Thus%2C putative kept within product function. Functional classification - Antibiotic resistance%3B~PMID:2694948%2C PMID:8486276;gbkey=CDS;inference=protein motif:Pfam:PF07690;locus_tag=Cj0035c;product=putative efflux protein;protein_id=CAL34215.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	52686	52754	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	52764	52832	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	52851	52919	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	52947	53015	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	53034	53102	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	53145	53213	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	53301	53369	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	53382	53450	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	53487	53540	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	53550	53618	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	53652	53720	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	53763	53831	.	-	.	ID=id-Cj0035c;Note=12 probable transmembrane helices predicted for Cj0035c by TMHMM2.0 at aa 13-35%2C 50-72%2C 84-106%2C 110-127%2C140-162%2C 167-189%2C 219-241%2C 256-278%2C 285-307%2C 317-339%2C346-368 and 372-394;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0035c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	52719	52751	.	-	.	ID=id-Cj0035c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0035c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	52758	53813	.	-	.	ID=id-Cj0035c-3;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 4.8e-52;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj0035c
gi|15791399|ref|NC_002163.1|	EMBL	gene	53970	55319	.	+	.	ID=gene-Cj0036;Name=Cj0036;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0036
gi|15791399|ref|NC_002163.1|	EMBL	CDS	53970	55319	.	+	0	ID=cds-CAL34216.1;Parent=gene-Cj0036;Dbxref=EnsemblGenomes-Gn:Cj0036,EnsemblGenomes-Tr:CAL34216,InterPro:IPR019219,UniProtKB/TrEMBL:Q0PC90,NCBI_GP:CAL34216.1;Name=CAL34216.1;Note=Original (2000) note: Cj0036%2C unknown%2C len: 449 aa%3B 37.8%25 identity to HP1143 hypothetical protein. Functional classification - Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0036;product=hypothetical protein Cj0036;protein_id=CAL34216.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	55343	56386	.	-	.	ID=gene-Cj0037c;Name=Cj0037c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0037c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	55343	56386	.	-	0	ID=cds-CAL34217.1;Parent=gene-Cj0037c;Dbxref=EnsemblGenomes-Gn:Cj0037c,EnsemblGenomes-Tr:CAL34217,GOA:Q0PC89,InterPro:IPR003088,InterPro:IPR009056,InterPro:IPR011031,UniProtKB/TrEMBL:Q0PC89,NCBI_GP:CAL34217.1;Name=CAL34217.1;Note=Original (2000) note: Cj0037c%2C possible cytochrome C%2C len: 347 aa%3B weak simlarity to e.g. TR:O69780 (EMBL:U76906) di-heme cytochrome c (fixP) from Rhizobium etli (287 aa)%2C fasta scores%3B opt: 97 z-score: 205.7 E(): 0.00034%2C 27.2%25 identity in 151 aa overlap. No Hp match. Contains 2x PS00190 Cytochrome c family heme-binding site signature and Pfam match to entry PF00034 cytochrome_c%2CCytochrome c%2C score 5.90%2C E-value 0.11%3B~Updated (2006) note: No specific characterisation with acceptable identity scores has been carried out yet. Thus%2C putative kept within product function. Functional classification - Energy metabolism - Respiration -Electron transport;gbkey=CDS;inference=protein motif:Prosite:PS00190;locus_tag=Cj0037c;product=putative cytochrome C;protein_id=CAL34217.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	55520	55783	.	-	.	ID=id-Cj0037c;Note=HMMPfam hit to PF00034%2C Cytochrome c%2C score 0.0012;gbkey=misc_feature;inference=protein motif:Pfam:PF00034;locus_tag=Cj0037c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	55736	55753	.	-	.	ID=id-Cj0037c-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0037c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	56078	56095	.	-	.	ID=id-Cj0037c-3;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0037c
gi|15791399|ref|NC_002163.1|	EMBL	gene	56564	57211	.	-	.	ID=gene-Cj0038c;Name=Cj0038c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0038c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	56564	57211	.	-	0	ID=cds-CAL34218.1;Parent=gene-Cj0038c;Dbxref=EnsemblGenomes-Gn:Cj0038c,EnsemblGenomes-Tr:CAL34218,GOA:Q0PC88,UniProtKB/TrEMBL:Q0PC88,NCBI_GP:CAL34218.1;Name=CAL34218.1;Note=Original (2000) note: Cj0038c%2C possible membrane protein%2C len: 215 aa%3B no HP match. Contains two possible transmembrane domains at the N-terminus%3B~Updated (2006) note: Pfam domain PF01743 Poly A polymerase family identified within CDS by carrying out own Pfam search. This family includes nucleic acid independent RNA polymerases%2C such as Poly(A) polymerase%2Cwhich adds the poly(A) tail to mRNA (EC:2.7.7.19). This family also includes the tRNA nucleotidyltransferase that adds the CCA to the 3' of the tRNA (EC:2.7.7.25). Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Thus%2C putative kept within product function. Functional classification - Synthesis and modification of macromolecules - DNA replication%2Crestriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Pfam:PF01743;locus_tag=Cj0038c;product=putative poly(A) polymerase family protein;protein_id=CAL34218.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	57032	57085	.	-	.	ID=id-Cj0038c;Note=2 probable transmembrane helices predicted for Cj0038c by TMHMM2.0 at aa 17-39 and 43-60;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0038c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	57095	57163	.	-	.	ID=id-Cj0038c;Note=2 probable transmembrane helices predicted for Cj0038c by TMHMM2.0 at aa 17-39 and 43-60;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0038c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	57211	59019	.	-	.	ID=gene-Cj0039c;Name=typA;gbkey=Gene;gene=typA;gene_biotype=protein_coding;locus_tag=Cj0039c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	57211	59019	.	-	0	ID=cds-CAL34219.1;Parent=gene-Cj0039c;Dbxref=EnsemblGenomes-Gn:Cj0039c,EnsemblGenomes-Tr:CAL34219,GOA:Q0PC87,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR006298,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PC87,NCBI_GP:CAL34219.1;Name=CAL34219.1;Note=Original (2000) note: Cj0039c%2C typA%2C GTP-binding protein typA homolog%2C len: 602 aa%3B similar to TYPA_ECOLI GTP-binding protein typA/bipA (591 aa)%2C fasta scores%3B opt: 2145 z-score: 2659.1 E(): 0%2C 54.2%25 identity in 592 aa overlap%2C and to many EF-G proteins e.g. EFG_AGRTU elongation factor G (EF-G) (699 aa)%2C fasta scores%3B opt: 344 z-score: 797.3 E(): 0%2C 26.2%25 identity in 715 aa overlap. 77.3%25 identity to HP0480. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00301 GTP-binding elongation factors signature and Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family (contains ATP/GTP binding P-loop)%2C score 282.90%2C E-value 4e-81%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Homolog designation kept within product function. Functional classification - Synthesis and modification of macromolecules - Protein translation and modification%3B~PMID:7783627%2C PMID:9642082%2C PMID:14560797;gbkey=CDS;gene=typA;inference=protein motif:Prosite:PS00301;locus_tag=Cj0039c;product=GTP-binding protein TypA homolog;protein_id=CAL34219.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	57580	57843	.	-	.	ID=id-Cj0039c;Note=HMMPfam hit to PF00679%2C Elongation factor G C-terminus%2C score 7.8e-30;gbkey=misc_feature;gene=typA;inference=protein motif:Pfam:PF00679;locus_tag=Cj0039c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	58156	58368	.	-	.	ID=id-Cj0039c-2;Note=HMMPfam hit to PF03144%2C Elongation factor Tu domain%2C score 6.7e-12;gbkey=misc_feature;gene=typA;inference=protein motif:Pfam:PF03144;locus_tag=Cj0039c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	58429	59016	.	-	.	ID=id-Cj0039c-3;Note=HMMPfam hit to PF00009%2C Elongation factor Tu GTP binding domain%2C score 6.7e-70;gbkey=misc_feature;gene=typA;inference=protein motif:Pfam:PF00009;locus_tag=Cj0039c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	58846	58893	.	-	.	ID=id-Cj0039c-4;Note=PS00301 GTP-binding elongation factors signature;gbkey=misc_feature;gene=typA;inference=protein motif:Prosite:PS00301;locus_tag=Cj0039c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	58966	58989	.	-	.	ID=id-Cj0039c-5;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=typA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0039c
gi|15791399|ref|NC_002163.1|	EMBL	gene	59154	59477	.	+	.	ID=gene-Cj0040;Name=Cj0040;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0040
gi|15791399|ref|NC_002163.1|	EMBL	CDS	59154	59477	.	+	0	ID=cds-CAL34220.1;Parent=gene-Cj0040;Dbxref=EnsemblGenomes-Gn:Cj0040,EnsemblGenomes-Tr:CAL34220,GOA:Q0PC86,InterPro:IPR002178,InterPro:IPR016152,UniProtKB/TrEMBL:Q0PC86,NCBI_GP:CAL34220.1;Name=CAL34220.1;Note=Original (2000) note: Cj0040%2C unknown%2C len: 107 aa%3B no Hp match%3B~Updated (2006) note: Literature search identified paper giving clues to product function. Functional classification - Unknown%3B~PMID:14985343;gbkey=CDS;locus_tag=Cj0040;product=hypothetical protein Cj0040;protein_id=CAL34220.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	59493	61289	.	+	.	ID=gene-Cj0041;Name=fliK;gbkey=Gene;gene=fliK;gene_biotype=protein_coding;locus_tag=Cj0041
gi|15791399|ref|NC_002163.1|	EMBL	CDS	59493	61289	.	+	0	ID=cds-CAL34221.1;Parent=gene-Cj0041;Dbxref=EnsemblGenomes-Gn:Cj0041,EnsemblGenomes-Tr:CAL34221,InterPro:IPR021136,UniProtKB/TrEMBL:Q0PC85,NCBI_GP:CAL34221.1;Name=CAL34221.1;Note=Original (2000) note: Cj0041%2C unknown%2C len: 598 aa%3B 25.2%25 identity to HP0906%2C but shorter at N-term%3B~Updated (2006) note: Literature search identified papers linking product function to be involved in motility and invasion. Unpublished observation by N.Kamal %26 C. Penn have predicted this CDS to be fliK. Literature search identified work carried out in Campylobacter jejuni%2CHelicobacter pylori and Escherichia coli. Product function modified to more specific family member. Putative was kept in product function as not fully characterised. Functional classification - Surface structures%3B~PMID:12379703%2C PMID:14985343%2C PMID:15812042%2CPMID:11895937%2C PMID:16077121%2C PMID:15276839;gbkey=CDS;gene=fliK;locus_tag=Cj0041;product=putative flagellar hook-length control protein;protein_id=CAL34221.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	61343	62227	.	+	.	ID=gene-Cj0042;Name=flgD;gbkey=Gene;gene=flgD;gene_biotype=protein_coding;locus_tag=Cj0042
gi|15791399|ref|NC_002163.1|	EMBL	CDS	61343	62227	.	+	0	ID=cds-CAL34222.1;Parent=gene-Cj0042;Dbxref=EnsemblGenomes-Gn:Cj0042,EnsemblGenomes-Tr:CAL34222,InterPro:IPR005648,InterPro:IPR025963,InterPro:IPR025965,UniProtKB/TrEMBL:Q0PC84,NCBI_GP:CAL34222.1;Name=CAL34222.1;Note=Original (2000) note: Cj0042%2C flgD%2C possible flagellar hook assembly protein%2C len: 294 aa%3B similar in part to flgD from e.g. TR:Q44920 (EMBL:L76303) flagellar hook assembly protein flgD%2C Borrelia burgdorferi (147 aa)%2Cfasta scores%3B opt: 170 z-score: 215.7 E(): 9.3e-05%2C 38.8%25 identity in 67 aa overlap%2C and TR:O07893 (EMBL:U42012) flgD%2C Treponema pallidum (153 aa)%2C fasta scores%3B opt: 165 z-score: 208.0 E(): 0.00025%2C 42.0%25 identity in 88 aa overlap. 28.9%25 identity to HP0907%3B~Updated (2006) note: Pfam domain PF03963 Flagellar hook capping protein was identified within CDS. Further support given to product function. Alignment does not cover full sequence length. No specific characterisation with acceptable identity score has been carried out yet. Thus%2C putative not added to product function. Functional classification - Surface structures%3B~PMID:8049271;gbkey=CDS;gene=flgD;inference=protein motif:Pfam:PF03963;locus_tag=Cj0042;product=putative flagellar hook assembly protein;protein_id=CAL34222.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	61382	61852	.	+	.	ID=id-Cj0042;Note=HMMPfam hit to PF03963%2C Flagellar hook capping protein%2C score 1.4e-60;gbkey=misc_feature;gene=flgD;inference=protein motif:Pfam:PF03963;locus_tag=Cj0042
gi|15791399|ref|NC_002163.1|	EMBL	gene	62231	63868	.	+	.	ID=gene-Cj0043;Name=flgE;gbkey=Gene;gene=flgE;gene_biotype=protein_coding;locus_tag=Cj0043
gi|15791399|ref|NC_002163.1|	EMBL	CDS	62231	63868	.	+	0	ID=cds-CAL34223.1;Parent=gene-Cj0043;Dbxref=EnsemblGenomes-Gn:Cj0043,EnsemblGenomes-Tr:CAL34223,GOA:Q0PC83,InterPro:IPR001444,InterPro:IPR010930,InterPro:IPR019776,InterPro:IPR020013,UniProtKB/TrEMBL:Q0PC83,NCBI_GP:CAL34223.1;Name=CAL34223.1;Note=Original (2000) note: Cj0043%2C flgE%2C probable flagellar hook protein%2C len: 545 aa%3B similar to e.g. FLGE_BORBU flagellar hook protein flgE (442 aa)%2C fasta scores%3B opt: 350 z-score: 665.8 E(): 7.9e-30%2C 27.5%25 identity in 553 aa overlap. 24.5%25 identity to HP0908. Contains PS00588 Flagella basal body rod proteins signature and Pfam match to entry PF00460 flg_bb_rod%2CFlagella basal body rod proteins%2C score 37.00%2C E-value 6.7e-08%3B~Updated (2006) note: Characterised within Borrilia burgdorferi and also some work within Campylobacter jejuni. Identity scores were marginal. Appropriate motifs were present and alignments covered full length of sequence. Thus%2C putative not added to product function. Functional classification - Surface structures%3B~PMID:9658019%2C PMID:9244248%2C PMID:9079915;gbkey=CDS;gene=flgE;inference=protein motif:Prosite:PS00588;locus_tag=Cj0043;product=flagellar hook protein;protein_id=CAL34223.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	62243	62335	.	+	.	ID=id-Cj0043;Note=HMMPfam hit to PF00460%2C Flagella basal body rod protein%2C score 1.4e-08;gbkey=misc_feature;gene=flgE;inference=protein motif:Pfam:PF00460;locus_tag=Cj0043
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	62261	62323	.	+	.	ID=id-Cj0043-2;Note=PS00588 Flagella basal body rod proteins signature;gbkey=misc_feature;gene=flgE;inference=protein motif:Prosite:PS00588;locus_tag=Cj0043
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	63140	63439	.	+	.	ID=id-Cj0043-3;Note=HMMPfam hit to PF07559%2C Flagellar basal body protein FlaE%2C score 1.9e-29;gbkey=misc_feature;gene=flgE;inference=protein motif:Pfam:PF07559;locus_tag=Cj0043
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	63743	63859	.	+	.	ID=id-Cj0043-4;Note=HMMPfam hit to PF06429%2C Domain of unknown function (DUF1078)%2C score 8.8e-18;gbkey=misc_feature;gene=flgE;inference=protein motif:Pfam:PF06429;locus_tag=Cj0043
gi|15791399|ref|NC_002163.1|	EMBL	gene	63872	65743	.	-	.	ID=gene-Cj0044c;Name=Cj0044c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0044c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	63872	65743	.	-	0	ID=cds-CAL34224.1;Parent=gene-Cj0044c;Dbxref=EnsemblGenomes-Gn:Cj0044c,EnsemblGenomes-Tr:CAL34224,InterPro:IPR005646,UniProtKB/TrEMBL:Q0PC82,NCBI_GP:CAL34224.1;Name=CAL34224.1;Note=Original (2000) note: Cj0044c%2C unknown%2C len: 623 aa%3B no Hp ortholog%2C Also similar to Cj0800c (28.5%25 identity in 625 aa overlap). Preceeded by a C(9-11) polymorphic region%3B C11 would allow the translation of Cj0045c to extend by another 15aa%2C overlapping the start of this CDS%3B C9 and C10 (consensus) have no effect%3B~Updated (2006) note: Literature search identified paper giving further clues to product function. Functional classification - Conserved hypothetical proteins%3B~PMID:14985343;gbkey=CDS;locus_tag=Cj0044c;product=hypothetical protein Cj0044c;protein_id=CAL34224.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	65744	66466	.	-	.	ID=gene-Cj0045c;Name=Cj0045c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0045c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	65744	66466	.	-	0	ID=cds-CAL34225.1;Parent=gene-Cj0045c;Dbxref=EnsemblGenomes-Gn:Cj0045c,EnsemblGenomes-Tr:CAL34225,GOA:Q0PC81,InterPro:IPR012312,InterPro:IPR012827,InterPro:IPR016131,UniProtKB/TrEMBL:Q0PC81,NCBI_GP:CAL34225.1;Name=CAL34225.1;Note=Original (2000) note: Cj0045c%2C possible iron-binding protein%2C len: 240 aa%3B weak similarity to members of the eukaryotic iron-binding hemerythrin family%2Ce.g. HEMT_LINUN hemerythrin alpha chain (117 aa)%2C fasta scores%3B opt: 105 z-score: 137.1 E(): 2.5%2C 23.8%25 identity in 122 aa overlap. Note that all of the iron-binding residues are conserved. No Hp match%2C similar to Cj0072c (pseudogene)%2C Cj0241c (30.9%25 identity in 123 aa overlap) and Cj1224 (27.7%25 identity in 202 aa overlap). Contains a C(9-11) polymorphic region at the N-terminus%3B C11 would allow the translation of this CDS to extend by another 15aa%2C overlapping the start of Cj0044c%3B C9 and C10 (consensus) have little effect%3B~Updated (2006) note: Pfam domain PF01814 Hemerythrin HHE cation binding domain identified within CDS. No specific characterisation with acceptable identity score has been carried out yet. Thus%2C putative kept within product function. Literature search identified paper giving further clues to product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:14985343;gbkey=CDS;inference=protein motif:Pfam:PF01814;locus_tag=Cj0045c;product=putative iron-binding protein;protein_id=CAL34225.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	66074	66238	.	-	.	ID=id-Cj0045c;Note=HMMPfam hit to PF01814%2C Hemerythrin HHE cation binding domain%2C score 0.0046;gbkey=misc_feature;inference=protein motif:Pfam:PF01814;locus_tag=Cj0045c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	66248	66433	.	-	.	ID=id-Cj0045c-2;Note=HMMPfam hit to PF01814%2C Hemerythrin HHE cation binding domain%2C score 0.0029;gbkey=misc_feature;inference=protein motif:Pfam:PF01814;locus_tag=Cj0045c
gi|15791399|ref|NC_002163.1|	EMBL	transcript	66646	66744	.	+	.	ID=rna-gi|15791399|ref|NC_002163.1|:66646..66744;Note=Bacterial signal recognition particle RNA%3B~Updated (2006) note: Running Rfam search revealed new non-coding RNA families within Campylobacter jejuni. Rfam RF00169%2C Bacterial signal recognition particle RNA was identified within CDS. This SRP is a univerally conserved ribonucleoprotein involved in the co-translational targeting of proteins to membranes;gbkey=misc_RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	66646	66744	.	+	.	ID=exon-gi|15791399|ref|NC_002163.1|:66646..66744-1;Parent=rna-gi|15791399|ref|NC_002163.1|:66646..66744;Note=Bacterial signal recognition particle RNA%3B~Updated (2006) note: Running Rfam search revealed new non-coding RNA families within Campylobacter jejuni. Rfam RF00169%2C Bacterial signal recognition particle RNA was identified within CDS. This SRP is a univerally conserved ribonucleoprotein involved in the co-translational targeting of proteins to membranes;gbkey=misc_RNA
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	66985	67113	.	+	.	ID=gene-Cj0046;Name=Cj0046;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0046;part=1/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	67229	67940	.	+	.	ID=gene-Cj0046;Name=Cj0046;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0046;part=2/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	67942	68203	.	+	.	ID=gene-Cj0046;Name=Cj0046;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0046;part=3/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	68205	68504	.	+	.	ID=gene-Cj0046;Name=Cj0046;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0046;part=4/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	66985	67113	.	+	0	ID=cds-Cj0046;Parent=gene-Cj0046;Note=Original (2000) note: Cj0046%2C probable transmembrane transport protein pseudogene%2C len: 1559 bp%3B fragmentary similarity in all three reading frames to members of the SODIT1 subfamily of the NADC/P/PHO87 family of transporters e.g. SOT1_SPIOL 2-oxoglutarate/malate translocator precursor (spinach) (569 aa)%2C fasta scores%3B opt: 278 z-score: 498.4 E(): 1.7e-20%2C 45.0%25 identity in 80 aa overlap%2C and YBHI_ECOLI (477 aa) fasta scores%3B opt: 196 z-score: 361.3 E(): 7.2e-13%2C 34.6%25 identity in 78 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00939 Sodium:sulfate symporter transmembrane identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0046;product=pseudogene (putative sodium:sulfate transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	67229	67411	.	+	0	ID=cds-Cj0046;Parent=gene-Cj0046;Note=Original (2000) note: Cj0046%2C probable transmembrane transport protein pseudogene%2C len: 1559 bp%3B fragmentary similarity in all three reading frames to members of the SODIT1 subfamily of the NADC/P/PHO87 family of transporters e.g. SOT1_SPIOL 2-oxoglutarate/malate translocator precursor (spinach) (569 aa)%2C fasta scores%3B opt: 278 z-score: 498.4 E(): 1.7e-20%2C 45.0%25 identity in 80 aa overlap%2C and YBHI_ECOLI (477 aa) fasta scores%3B opt: 196 z-score: 361.3 E(): 7.2e-13%2C 34.6%25 identity in 78 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00939 Sodium:sulfate symporter transmembrane identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0046;product=pseudogene (putative sodium:sulfate transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	67411	67602	.	+	0	ID=cds-Cj0046;Parent=gene-Cj0046;Note=Original (2000) note: Cj0046%2C probable transmembrane transport protein pseudogene%2C len: 1559 bp%3B fragmentary similarity in all three reading frames to members of the SODIT1 subfamily of the NADC/P/PHO87 family of transporters e.g. SOT1_SPIOL 2-oxoglutarate/malate translocator precursor (spinach) (569 aa)%2C fasta scores%3B opt: 278 z-score: 498.4 E(): 1.7e-20%2C 45.0%25 identity in 80 aa overlap%2C and YBHI_ECOLI (477 aa) fasta scores%3B opt: 196 z-score: 361.3 E(): 7.2e-13%2C 34.6%25 identity in 78 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00939 Sodium:sulfate symporter transmembrane identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0046;product=pseudogene (putative sodium:sulfate transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	67602	67940	.	+	0	ID=cds-Cj0046;Parent=gene-Cj0046;Note=Original (2000) note: Cj0046%2C probable transmembrane transport protein pseudogene%2C len: 1559 bp%3B fragmentary similarity in all three reading frames to members of the SODIT1 subfamily of the NADC/P/PHO87 family of transporters e.g. SOT1_SPIOL 2-oxoglutarate/malate translocator precursor (spinach) (569 aa)%2C fasta scores%3B opt: 278 z-score: 498.4 E(): 1.7e-20%2C 45.0%25 identity in 80 aa overlap%2C and YBHI_ECOLI (477 aa) fasta scores%3B opt: 196 z-score: 361.3 E(): 7.2e-13%2C 34.6%25 identity in 78 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00939 Sodium:sulfate symporter transmembrane identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0046;product=pseudogene (putative sodium:sulfate transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	67942	68203	.	+	0	ID=cds-Cj0046;Parent=gene-Cj0046;Note=Original (2000) note: Cj0046%2C probable transmembrane transport protein pseudogene%2C len: 1559 bp%3B fragmentary similarity in all three reading frames to members of the SODIT1 subfamily of the NADC/P/PHO87 family of transporters e.g. SOT1_SPIOL 2-oxoglutarate/malate translocator precursor (spinach) (569 aa)%2C fasta scores%3B opt: 278 z-score: 498.4 E(): 1.7e-20%2C 45.0%25 identity in 80 aa overlap%2C and YBHI_ECOLI (477 aa) fasta scores%3B opt: 196 z-score: 361.3 E(): 7.2e-13%2C 34.6%25 identity in 78 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00939 Sodium:sulfate symporter transmembrane identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0046;product=pseudogene (putative sodium:sulfate transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	68205	68278	.	+	2	ID=cds-Cj0046;Parent=gene-Cj0046;Note=Original (2000) note: Cj0046%2C probable transmembrane transport protein pseudogene%2C len: 1559 bp%3B fragmentary similarity in all three reading frames to members of the SODIT1 subfamily of the NADC/P/PHO87 family of transporters e.g. SOT1_SPIOL 2-oxoglutarate/malate translocator precursor (spinach) (569 aa)%2C fasta scores%3B opt: 278 z-score: 498.4 E(): 1.7e-20%2C 45.0%25 identity in 80 aa overlap%2C and YBHI_ECOLI (477 aa) fasta scores%3B opt: 196 z-score: 361.3 E(): 7.2e-13%2C 34.6%25 identity in 78 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00939 Sodium:sulfate symporter transmembrane identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0046;product=pseudogene (putative sodium:sulfate transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	68277	68504	.	+	0	ID=cds-Cj0046;Parent=gene-Cj0046;Note=Original (2000) note: Cj0046%2C probable transmembrane transport protein pseudogene%2C len: 1559 bp%3B fragmentary similarity in all three reading frames to members of the SODIT1 subfamily of the NADC/P/PHO87 family of transporters e.g. SOT1_SPIOL 2-oxoglutarate/malate translocator precursor (spinach) (569 aa)%2C fasta scores%3B opt: 278 z-score: 498.4 E(): 1.7e-20%2C 45.0%25 identity in 80 aa overlap%2C and YBHI_ECOLI (477 aa) fasta scores%3B opt: 196 z-score: 361.3 E(): 7.2e-13%2C 34.6%25 identity in 78 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00939 Sodium:sulfate symporter transmembrane identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0046;product=pseudogene (putative sodium:sulfate transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	66985	67113	.	+	.	ID=id-Cj0046;Note=HMMPfam hit to PF00939%2C Sodium:sulfate symporter transmembrane%2C score 8.5e-118;gbkey=misc_feature;inference=protein motif:Pfam:PF00939;is_ordered=true;locus_tag=Cj0046;part=1/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	67229	67411	.	+	.	ID=id-Cj0046;Note=HMMPfam hit to PF00939%2C Sodium:sulfate symporter transmembrane%2C score 8.5e-118;gbkey=misc_feature;inference=protein motif:Pfam:PF00939;is_ordered=true;locus_tag=Cj0046;part=2/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	67411	67602	.	+	.	ID=id-Cj0046;Note=HMMPfam hit to PF00939%2C Sodium:sulfate symporter transmembrane%2C score 8.5e-118;gbkey=misc_feature;inference=protein motif:Pfam:PF00939;is_ordered=true;locus_tag=Cj0046;part=3/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	67602	67940	.	+	.	ID=id-Cj0046;Note=HMMPfam hit to PF00939%2C Sodium:sulfate symporter transmembrane%2C score 8.5e-118;gbkey=misc_feature;inference=protein motif:Pfam:PF00939;is_ordered=true;locus_tag=Cj0046;part=4/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	67942	68203	.	+	.	ID=id-Cj0046;Note=HMMPfam hit to PF00939%2C Sodium:sulfate symporter transmembrane%2C score 8.5e-118;gbkey=misc_feature;inference=protein motif:Pfam:PF00939;is_ordered=true;locus_tag=Cj0046;part=5/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	68205	68277	.	+	.	ID=id-Cj0046;Note=HMMPfam hit to PF00939%2C Sodium:sulfate symporter transmembrane%2C score 8.5e-118;gbkey=misc_feature;inference=protein motif:Pfam:PF00939;is_ordered=true;locus_tag=Cj0046;part=6/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	68278	68492	.	+	.	ID=id-Cj0046;Note=HMMPfam hit to PF00939%2C Sodium:sulfate symporter transmembrane%2C score 8.5e-118;gbkey=misc_feature;inference=protein motif:Pfam:PF00939;is_ordered=true;locus_tag=Cj0046;part=7/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	67012	67080	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=1/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	67289	67357	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=2/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	67719	67787	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=3/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	67875	67940	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=4/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	67942	67944	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=5/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	67957	68025	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=6/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	68050	68118	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=7/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	68161	68203	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=8/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	68205	68230	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=9/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	68249	68277	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=10/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	68278	68315	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=11/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	68328	68396	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=12/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	68415	68483	.	+	.	ID=id-Cj0046-2;Note=10 probable transmembrane helices predicted for Cj0046 by TMHMM2.0 at aa 10-32%2C 64-86%2C 208-230%2C 260-282%2C287-309%2C 318-340%2C 355-377%2C 384-406%2C 411-433 and 440-462;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0046;part=13/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	68496	68544	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:68496..68544;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	68532	69548	.	-	.	ID=gene-Cj0053c;Name=trmU;gbkey=Gene;gene=trmU;gene_biotype=protein_coding;locus_tag=Cj0053c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	68532	69548	.	-	0	ID=cds-CAL34227.1;Parent=gene-Cj0053c;Dbxref=EnsemblGenomes-Gn:Cj0053c,EnsemblGenomes-Tr:CAL34227,GOA:Q9PJ66,InterPro:IPR004506,InterPro:IPR014729,InterPro:IPR023382,NCBI_GP:CAL34227.1;Name=CAL34227.1;Note=Original (2000) note: Cj0053c%2C trmU%2C probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase%2Clen: 338 aa%3B similar to many e.g. TRMU_ECOLI tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) (383 aa)%2C fasta scores%3B opt: 249 z-score: 751.3 E(): 0%2C 32.7%25 identity in 358 aa overlap. 45.8%25 identity to HP1335 conserved hypothetical protein%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:4703553%2C PMID:3298234;gbkey=CDS;gene=trmU;locus_tag=Cj0053c;product=tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase;protein_id=CAL34227.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	68538	69548	.	-	.	ID=id-Cj0053c;Note=HMMPfam hit to PF03054%2C tRNA methyl transferase%2Cscore 1.3e-132;gbkey=misc_feature;gene=trmU;inference=protein motif:Pfam:PF03054;locus_tag=Cj0053c
gi|15791399|ref|NC_002163.1|	EMBL	gene	69548	70153	.	-	.	ID=gene-Cj0054c;Name=Cj0054c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0054c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	69548	70153	.	-	0	ID=cds-CAL34228.1;Parent=gene-Cj0054c;Dbxref=EnsemblGenomes-Gn:Cj0054c,EnsemblGenomes-Tr:CAL34228,InterPro:IPR005269,UniProtKB/TrEMBL:Q0PC79,NCBI_GP:CAL34228.1;Name=CAL34228.1;Note=Original (2000) note: Cj0054c%2C unknown%2C len: 201 aa%3B similar to hypothetical proteins e.g. TR:Q46063 (EMBL:X81379) Corynebacterium glutamicum hypothetucal protein (211 aa)%2C fasta scores%3B opt: 426 z-score: 696.2 E(): 1.6e-31%2C 44.2%25 identity in 156 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03641 possible lysine decarboxylase family identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity score has been carried out yet. Thus%2C putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Pfam:PF03641;locus_tag=Cj0054c;product=putative lysine decarboxylase family protein;protein_id=CAL34228.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	69551	69967	.	-	.	ID=id-Cj0054c;Note=HMMPfam hit to PF03641%2C Possible lysine decarboxylase%2C score 2.2e-53;gbkey=misc_feature;inference=protein motif:Pfam:PF03641;locus_tag=Cj0054c
gi|15791399|ref|NC_002163.1|	EMBL	gene	70274	71098	.	-	.	ID=gene-Cj0055c;Name=Cj0055c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0055c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	70274	71098	.	-	0	ID=cds-CAL34229.1;Parent=gene-Cj0055c;Dbxref=EnsemblGenomes-Gn:Cj0055c,EnsemblGenomes-Tr:CAL34229,UniProtKB/TrEMBL:Q0PC78,NCBI_GP:CAL34229.1;Name=CAL34229.1;Note=Original (2000) note: Cj0055c%2C unknown%2C len: 274 aa%3B no Hp match%2C similar in C-terminus to Cj0122 (46.6%25 identity in 148 aa overlap)%3B~Updated (2006) note: Contains Prosite match PS01164 COPPER_AMINE_OXID%2C Copper amine oxidase. Amine oxidases are enzymes that catalyze the oxidation of different biogenic amines e.g. neurotransmitters. Copper-containing amine oxidases are found in bacteria. This particular form binds one copper ion per subunit as well as a 2%2C4%2C5-trihydroxyphenylalanine quinone (or topaquinone) (TPQ) cofactor (PMID:8591028). Functional classification -Unknown%3B~PMID:8591028;gbkey=CDS;inference=protein motif:Prosite:PS01164;locus_tag=Cj0055c;product=conserved hypothetical protein Cj0055c;protein_id=CAL34229.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	71024	71065	.	-	.	ID=id-Cj0055c;Note=PS01164 Copper amine oxidase topaquinone signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01164;locus_tag=Cj0055c
gi|15791399|ref|NC_002163.1|	EMBL	gene	71155	71571	.	-	.	ID=gene-Cj0056c;Name=Cj0056c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0056c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	71155	71571	.	-	0	ID=cds-CAL34230.1;Parent=gene-Cj0056c;Dbxref=EnsemblGenomes-Gn:Cj0056c,EnsemblGenomes-Tr:CAL34230,UniProtKB/TrEMBL:Q0PC77,NCBI_GP:CAL34230.1;Name=CAL34230.1;Note=Original (2000) note: Cj0056c%2C unknown%2C len: 138 aa. No Hp match%3B~Updated (2006) note: Literature search identified paper giving clues to product function. Functional classification - Unknown%3B~PMID:14702320;gbkey=CDS;locus_tag=Cj0056c;product=hypothetical protein Cj0056c;protein_id=CAL34230.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	72005	72859	.	+	.	ID=gene-Cj0057;Name=Cj0057;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0057
gi|15791399|ref|NC_002163.1|	EMBL	CDS	72005	72859	.	+	0	ID=cds-CAL34231.1;Parent=gene-Cj0057;Dbxref=EnsemblGenomes-Gn:Cj0057,EnsemblGenomes-Tr:CAL34231,UniProtKB/TrEMBL:Q0PC76,NCBI_GP:CAL34231.1;Name=CAL34231.1;Note=Original (2000) note: Cj0057%2C possible periplasmic protein%2C len: 284 aa%3B no Hp match. Contains possible N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0057;product=putative periplasmic protein;protein_id=CAL34231.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	72844	73443	.	+	.	ID=gene-Cj0058;Name=Cj0058;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0058
gi|15791399|ref|NC_002163.1|	EMBL	CDS	72844	73443	.	+	0	ID=cds-CAL34232.1;Parent=gene-Cj0058;Dbxref=EnsemblGenomes-Gn:Cj0058,EnsemblGenomes-Tr:CAL34232,GOA:Q0PC75,InterPro:IPR005074,UniProtKB/TrEMBL:Q0PC75,NCBI_GP:CAL34232.1;Name=CAL34232.1;Note=Original (2000) note: Cj0058%2C possible periplasmic protein%2C len: 199 aa%3B no Hp match. Contains possible N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF03412 Peptidase C39 family identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation with acceptable identity scores carried out yet. Thus%2C putative kept within product function. Functional classification - Degradation of macromolecules - Proteins%2C peptides and glycopeptides;gbkey=CDS;inference=protein motif:Pfam:PF03412;locus_tag=Cj0058;product=putative peptidase C39 family protein;protein_id=CAL34232.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	72949	73374	.	+	.	ID=id-Cj0058;Note=HMMPfam hit to PF03412%2C Peptidase C39 family%2C score 4.5e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF03412;locus_tag=Cj0058
gi|15791399|ref|NC_002163.1|	EMBL	gene	73492	74334	.	-	.	ID=gene-Cj0059c;Name=fliY;gbkey=Gene;gene=fliY;gene_biotype=protein_coding;locus_tag=Cj0059c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	73492	74334	.	-	0	ID=cds-CAL34233.1;Parent=gene-Cj0059c;Dbxref=EnsemblGenomes-Gn:Cj0059c,EnsemblGenomes-Tr:CAL34233,GOA:Q0PC74,InterPro:IPR001172,InterPro:IPR001543,InterPro:IPR012826,UniProtKB/TrEMBL:Q0PC74,NCBI_GP:CAL34233.1;Name=CAL34233.1;Note=Original (2000) note: Cj0059c%2C fliY%2C probable flagellar motor switch protein%2C len: 280 aa%3B similar to e.g. TR:P74928 (EMBL:U36839) Treponema pallidum flagellar motor switch protein fliY (348 aa)%2C fasta scores%3B opt: 277 z-score: 496.5 E(): 2.1e-20%2C 26.2%25 identity in 309 aa overlap. Also similar in C-terminus to FLIN_BORBU flagellar motor switch protein fliN (113 aa)%2C fasta scores%3B opt: 231 z-score: 362.5 E(): 6.2e-13%2C 44.2%25 identity in 77 aa overlap. 39.7%25 identity to HP1030. Contains Pfam match to entry PF01052 SPOA_protein%2C Surface presentation of antigens (SPOA) protein%2C score 52.80%2CE-value 7.5e-12%3B~Updated (2006) note: Chararcterisation has been carried out within Escherichia coli and Bacillus subtilis%2Chowever%2C only partial sequence alignment was achieved. Thus%2C putative kept within product function. Functional classification - Cell envelope - Surface structures%3B~PMID:1447979%2C PMID:1898932%2C PMID:14749334;gbkey=CDS;gene=fliY;inference=protein motif:Pfam:PF01052;locus_tag=Cj0059c;product=putative flagellar motor switch protein;protein_id=CAL34233.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	73516	73746	.	-	.	ID=id-Cj0059c;Note=HMMPfam hit to PF01052%2C Surface presentation of antigens (SPOA) prot%2C score 6.1e-24;gbkey=misc_feature;gene=fliY;inference=protein motif:Pfam:PF01052;locus_tag=Cj0059c
gi|15791399|ref|NC_002163.1|	EMBL	gene	74331	75410	.	-	.	ID=gene-Cj0060c;Name=fliM;gbkey=Gene;gene=fliM;gene_biotype=protein_coding;locus_tag=Cj0060c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	74331	75410	.	-	0	ID=cds-CAL34234.1;Parent=gene-Cj0060c;Dbxref=EnsemblGenomes-Gn:Cj0060c,EnsemblGenomes-Tr:CAL34234,GOA:Q0PC73,InterPro:IPR001543,InterPro:IPR001689,InterPro:IPR028976,UniProtKB/TrEMBL:Q0PC73,NCBI_GP:CAL34234.1;Name=CAL34234.1;Note=Original (2000) note: Cj0060c%2C fliM%2C probable flagellar motor switch protein%2C len: 359 aa%3B simlar to e.g. FLIM_BACSU flagellar motor switch protein fliM (332 aa)%2C fasta scores%3B opt: 728 z-score: 1046.5 E(): 0%2C 35.6%25 identity in 329 aa overlap. 61.1%25 identity to HP1031%3B~Updated (2006) note: Pfam domain PF01052 Surface presentation of antigens (SPOA) protein and PF02154 Flagellar motor switch protein FliM were identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with acceptable identity score. Thus%2C putative not added to product function. Functional classification - Cell envelope -Surface structures%3B~PMID:1898932%2C PMID:8169223;gbkey=CDS;gene=fliM;inference=protein motif:Pfam:PF02154;locus_tag=Cj0060c;product=flagellar motor switch protein;protein_id=CAL34234.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	74430	74660	.	-	.	ID=id-Cj0060c;Note=HMMPfam hit to PF01052%2C Surface presentation of antigens (SPOA) prot%2C score 0.00022;gbkey=misc_feature;gene=fliM;inference=protein motif:Pfam:PF01052;locus_tag=Cj0060c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	74718	75290	.	-	.	ID=id-Cj0060c-2;Note=HMMPfam hit to PF02154%2C Flagellar motor switch protein FliM%2C score 8.3e-105;gbkey=misc_feature;gene=fliM;inference=protein motif:Pfam:PF02154;locus_tag=Cj0060c
gi|15791399|ref|NC_002163.1|	EMBL	gene	75410	76126	.	-	.	ID=gene-Cj0061c;Name=fliA;gbkey=Gene;gene=fliA;gene_biotype=protein_coding;locus_tag=Cj0061c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	75410	76126	.	-	0	ID=cds-CAL34235.1;Parent=gene-Cj0061c;Dbxref=EnsemblGenomes-Gn:Cj0061c,EnsemblGenomes-Tr:CAL34235,GOA:Q0PC72,InterPro:IPR000943,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR011991,InterPro:IPR012845,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,UniProtKB/TrEMBL:Q0PC72,NCBI_GP:CAL34235.1;Name=CAL34235.1;Note=Original (2000) note: Cj0061c%2C fliA%2C probable RNA polymerase sigma factor for flagellar operon%2C len: 238 aa%3B similar to many e.g. FLIA_ECOLI RNA polymerase sigma factor for flagellar operon (sigma-F factor) (239 aa)%2Cfasta scores%3B opt: 235 z-score: 539.0 E(): 9.1e-23%2C 31.6%25 identity in 225 aa overlap. 54.9%25 identity to HP1032. Contains PS00716 Sigma-70 factors family signature 2%2C Pfam match to entry PF00140 sigma70%2C Sigma-70 factors%2C score 91.20%2C E-value 2e-23 and helix-turn-helix motif (Score 1846%2C +5.47 SD)%3B~Updated (2006) note: Characterised within Campylobacter jejuni%2C Escherichia coli and Helicobacter pylori. Thus%2C putative removed from product function. Functional classification - Cell envelope - Surface structures%3B~PMID:11292815%2C PMID:7590326%2C PMID:11985711;gbkey=CDS;gene=fliA;inference=protein motif:Prosite:PS00716;locus_tag=Cj0061c;product=RNA polymerase sigma factor for flagellar operon;protein_id=CAL34235.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	75422	75571	.	-	.	ID=id-Cj0061c;Note=HMMPfam hit to PF04545%2C Sigma-70%2C region%2C score 5.8e-19;gbkey=misc_feature;gene=fliA;inference=protein motif:Pfam:PF04545;locus_tag=Cj0061c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	75428	75508	.	-	.	ID=id-Cj0061c-2;Note=PS00716 Sigma-70 factors family signature 2;gbkey=misc_feature;gene=fliA;inference=protein motif:Prosite:PS00716;locus_tag=Cj0061c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	75827	76045	.	-	.	ID=id-Cj0061c-3;Note=HMMPfam hit to PF04542%2C Sigma-70 region%2C score 3.3e-12;gbkey=misc_feature;gene=fliA;inference=protein motif:Pfam:PF04542;locus_tag=Cj0061c
gi|15791399|ref|NC_002163.1|	EMBL	gene	76083	76439	.	-	.	ID=gene-Cj0062c;Name=Cj0062c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0062c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	76083	76439	.	-	0	ID=cds-CAL34236.1;Parent=gene-Cj0062c;Dbxref=EnsemblGenomes-Gn:Cj0062c,EnsemblGenomes-Tr:CAL34236,UniProtKB/TrEMBL:Q0PC71,NCBI_GP:CAL34236.1;Name=CAL34236.1;Note=Original (2000) note: Cj0062c%2C probable integral membrane protein%2C len: 118 aa%3B no Hp match. Contains two possible transmembrane domains. Functional classification - Cell envelope - Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj0062c;product=putative integral membrane protein;protein_id=CAL34236.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	76278	76346	.	-	.	ID=id-Cj0062c;Note=2 probable transmembrane helices predicted for Cj0062c by TMHMM2.0 at aa 7-26 and 32-54;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0062c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	76362	76421	.	-	.	ID=id-Cj0062c;Note=2 probable transmembrane helices predicted for Cj0062c by TMHMM2.0 at aa 7-26 and 32-54;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0062c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	76458	77324	.	-	.	ID=gene-Cj0063c;Name=Cj0063c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0063c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	76458	77324	.	-	0	ID=cds-CAL34237.1;Parent=gene-Cj0063c;Dbxref=EnsemblGenomes-Gn:Cj0063c,EnsemblGenomes-Tr:CAL34237,GOA:Q0PC70,InterPro:IPR002586,InterPro:IPR025501,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PC70,NCBI_GP:CAL34237.1;Name=CAL34237.1;Note=Original (2000) note: Cj0063c%2C probable ATP-binding protein%2C len: 288 aa%3B similar to hypothetical proteins in other flagellar operons e.g. YLXH_BACSU hypothetical 33.2 kd protein in flhF-cheB intergenic region (298 aa)%2C fasta scores%3B opt: 390 z-score: 493.5 E(): 3.1e-20%2C 29.0%25 identity in 293 aa overlap%2C and to cell division proteins e.g. MIND_BACSU septum site-determining protein minD (268 aa)%2C fasta scores%3B opt: 323 z-score: 417.6 E(): 5.3e-16%2C32.9%25 identity in 249 aa overlap. 45.7%25 identity to HP1034. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00991 ParA%2C ParA family ATPase%2C score 34.80%2C E-value 1.3e-06%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Thus%2Cputative kept within product function. Functional classification - Cell envelope - Surface structures;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0063c;product=putative ATP-binding protein;protein_id=CAL34237.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	76623	77249	.	-	.	ID=id-Cj0063c;Note=HMMPfam hit to PF01656%2C CobQ/CobB/MinD/ParA nucleotide binding domai%2C score 5.8e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF01656;locus_tag=Cj0063c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	77211	77234	.	-	.	ID=id-Cj0063c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0063c
gi|15791399|ref|NC_002163.1|	EMBL	gene	77317	78771	.	-	.	ID=gene-Cj0064c;Name=flhF;gbkey=Gene;gene=flhF;gene_biotype=protein_coding;locus_tag=Cj0064c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	77317	78771	.	-	0	ID=cds-CAL34238.1;Parent=gene-Cj0064c;Dbxref=EnsemblGenomes-Gn:Cj0064c,EnsemblGenomes-Tr:CAL34238,GOA:O52908,InterPro:IPR000897,InterPro:IPR003593,InterPro:IPR020006,InterPro:IPR027417,NCBI_GP:CAL34238.1;Name=CAL34238.1;Note=Original (2000) note: Cj0064c%2C flhF%2C flagellar biosynthesis protein%2C len: 484 aa%3B similar to e.g. FLHF_BACSU flagellar biosynthesis protein flhF (366 aa)%2Cfasta scores%3B opt: 406 z-score: 483.3 E(): 1.2e-19%2C 32.0%25 identity in 256 aa overlap. 99.0%25 identity to TR:O52908 (EMBL:AJ000857) C. jejuni flhF protein (fragment) (104 aa). 40.9%25 identity to HP1035. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00448 SRP54%2C SRP54-type protein%2C score -25.00%2CE-value 1.8e-09%3B~Updated (2006) note: Characterised within Campylobacter jejuni and Bacillus subtilis. Thus%2C putative not added to product function. Functional classification -Cell envelope - Surface structures%3B~PMID:10792727%2C PMID:14617189%2C PMID:15317803;gbkey=CDS;gene=flhF;inference=protein motif:Prosite:PS00017;locus_tag=Cj0064c;product=flagellar biosynthesis protein;protein_id=CAL34238.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	77347	77931	.	-	.	ID=id-Cj0064c;Note=HMMPfam hit to PF00448%2C SRP54-type protein%2C GTPase domain%2C score 1.9e-40;gbkey=misc_feature;gene=flhF;inference=protein motif:Pfam:PF00448;locus_tag=Cj0064c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	77884	77907	.	-	.	ID=id-Cj0064c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=flhF;inference=protein motif:Prosite:PS00017;locus_tag=Cj0064c
gi|15791399|ref|NC_002163.1|	EMBL	gene	78781	79254	.	-	.	ID=gene-Cj0065c;Name=folK;gbkey=Gene;gene=folK;gene_biotype=protein_coding;locus_tag=Cj0065c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	78781	79254	.	-	0	ID=cds-CAL34239.1;Parent=gene-Cj0065c;Dbxref=EnsemblGenomes-Gn:Cj0065c,EnsemblGenomes-Tr:CAL34239,GOA:Q9PJ54,InterPro:IPR000550,NCBI_GP:CAL34239.1;Name=CAL34239.1;Note=Original (2000) note: Cj0065c%2C folK%2C possible 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase%2C len: 157 aa%2C similar to e.g. HPPK_BACSU 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC 2.7.6.3) (167 aa)%2C fasta scores%3B opt: 194 z-score: 370.0 E(): 2.4e-13%2C 28.7%25 identity in 129 aa overlap. 35.6%25 identity to HP1036. Contains Pfam match to entry PF01288 HPPK%2C7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)%2C score 4.10%2C E-value 1.1e-06%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli%2C however%2C identity scores were marginal. Thus%2C putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Folic acid%3B~PMID:1325970;gbkey=CDS;gene=folK;inference=protein motif:Pfam:PF01288;locus_tag=Cj0065c;product=putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase;protein_id=CAL34239.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	78784	79164	.	-	.	ID=id-Cj0065c;Note=HMMPfam hit to PF01288%2C7%2C8-dihydro-6-hydroxymethylpterin-pyrophosph%2C score 3.1e-25;gbkey=misc_feature;gene=folK;inference=protein motif:Pfam:PF01288;locus_tag=Cj0065c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	78880	78915	.	-	.	ID=id-Cj0065c-2;Note=PS00794 7%2C8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature;gbkey=misc_feature;gene=folK;inference=protein motif:Prosite:PS00794;locus_tag=Cj0065c
gi|15791399|ref|NC_002163.1|	EMBL	gene	79257	79736	.	-	.	ID=gene-Cj0066c;Name=aroQ;gbkey=Gene;gene=aroQ;gene_biotype=protein_coding;locus_tag=Cj0066c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	79257	79736	.	-	0	ID=cds-CAL34240.1;Parent=gene-Cj0066c;Dbxref=EnsemblGenomes-Gn:Cj0066c,EnsemblGenomes-Tr:CAL34240,GOA:Q9PJ53,InterPro:IPR001874,InterPro:IPR018509,NCBI_GP:CAL34240.1;Name=CAL34240.1;Note=Original (2000) note: Cj0066c%2C aroQ%2C probable 3-dehydroquinate dehydratase%2C len: 159 aa%3B similar to type II enzymes e.g. AROD_ACTPL 3-dehydroquinate dehydratase (EC 4.2.1.10) (154 aa)%2C fasta scores%3B opt: 419 z-score: 765.6 E(): 0%2C 44.8%25 identity in 145 aa overlap. 50.9%25 identity to HP1038. Contains Pfam match to entry PF01220 DHquinase_II%2C Dehydroquinase class II %2C score 261.60%2CE-value 1e-74%3B~Updated (2006) note: Characterised within Helicobacter pylori with acceptable identity scores. Thus%2Cputative removed from product function. Functional classification - Amino acid biosynthesis - Aromatic amino acid family%3B~PMID:8912695%2C PMID:12784220;gbkey=CDS;gene=aroQ;inference=protein motif:Pfam:PF01220;locus_tag=Cj0066c;product=3-dehydroquinate dehydratase;protein_id=CAL34240.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	79305	79730	.	-	.	ID=id-Cj0066c;Note=HMMPfam hit to PF01220%2C Dehydroquinase class II%2Cscore 1.4e-74;gbkey=misc_feature;gene=aroQ;inference=protein motif:Pfam:PF01220;locus_tag=Cj0066c
gi|15791399|ref|NC_002163.1|	EMBL	gene	79827	81056	.	+	.	ID=gene-Cj0067;Name=Cj0067;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0067
gi|15791399|ref|NC_002163.1|	EMBL	CDS	79827	81056	.	+	0	ID=cds-CAL34241.1;Parent=gene-Cj0067;Dbxref=EnsemblGenomes-Gn:Cj0067,EnsemblGenomes-Tr:CAL34241,GOA:Q0PC66,InterPro:IPR006680,InterPro:IPR011059,UniProtKB/TrEMBL:Q0PC66,NCBI_GP:CAL34241.1;Name=CAL34241.1;Note=Original (2000) note: Cj0067%2C unknown%2C len: 409 aa%3B identical to%2C but shorter than%2C C. jejuni hypothetical protein TR:P71126 (EMBL:U38524) upstream of pspA (518 aa) (99.5%25 identity in 409 aa overlap)%2C and to many hypothetical proteins e.g. YF41_METJA hypothetical protein MJ1541 (420 aa)%2C fasta scores%3B opt: 226 z-score: 413.4 E(): 9.2e-16%2C 26.9%25 identity in 383 aa overlap. 42.0%25 identity to HP0267 chlorohydrolase%3B~Updated (2006) note: Pfam domain PF01979 Amidohydrolase family identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity score has yet been carried out. Thus%2C putative kept within product function. Functional classification -Misc%3B~PMID:8793884;gbkey=CDS;inference=protein motif:Pfam:PF01979;locus_tag=Cj0067;product=putative amidohydrolase family protein;protein_id=CAL34241.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	79992	80957	.	+	.	ID=id-Cj0067;Note=HMMPfam hit to PF01979%2C Amidohydrolase family%2Cscore 1.8e-68;gbkey=misc_feature;inference=protein motif:Pfam:PF01979;locus_tag=Cj0067
gi|15791399|ref|NC_002163.1|	EMBL	gene	81044	81940	.	+	.	ID=gene-Cj0068;Name=pspA;gbkey=Gene;gene=pspA;gene_biotype=protein_coding;locus_tag=Cj0068
gi|15791399|ref|NC_002163.1|	EMBL	CDS	81044	81940	.	+	0	ID=cds-CAL34242.1;Parent=gene-Cj0068;Dbxref=EnsemblGenomes-Gn:Cj0068,EnsemblGenomes-Tr:CAL34242,GOA:Q0PC65,InterPro:IPR002142,InterPro:IPR004635,InterPro:IPR029045,UniProtKB/TrEMBL:Q0PC65,NCBI_GP:CAL34242.1;Name=CAL34242.1;Note=Original (2000) note: Cj0068%2C pspA%2C probable protease required for pilus-like appendage formation%2C len: 298 aa%3B almost identical to TR:P71127 (EMBL:U38524) pspA (298 aa) (99.0%25 identity in 298 aa overlap) and similar to the C-terminus of e.g. SPPA_ECOLI protease IV (618 aa)%2Cfasta scores%3B opt: 285 z-score: 266.8 E(): 1.3e-07%2C 24.7%25 identity in 251 aa overlap. 42.0%25 identity to HP1435%3B~Updated (2006) note: Pfam domain PF01343 Peptidase family S49 identified within CDS. Product function based on direct submission with paper (PMID:8793884). Putative not added to product function due to characterisation work within Campylobacter jejuni. Functional classification -Degradation of macromolecules - Surface structures%3B~PMID:8793884%2C PMID:3522590;gbkey=CDS;gene=pspA;inference=protein motif:Pfam:PF01343;locus_tag=Cj0068;product=protease;protein_id=CAL34242.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	81080	81148	.	+	.	ID=id-Cj0068;Note=1 probable transmembrane helix predicted for Cj0068 by TMHMM2.0 at aa 13-35;gbkey=misc_feature;gene=pspA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0068
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	81344	81805	.	+	.	ID=id-Cj0068-2;Note=HMMPfam hit to PF01343%2C Peptidase family S49%2C score 1.4e-74;gbkey=misc_feature;gene=pspA;inference=protein motif:Pfam:PF01343;locus_tag=Cj0068
gi|15791399|ref|NC_002163.1|	EMBL	gene	82019	83050	.	+	.	ID=gene-Cj0069;Name=Cj0069;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0069
gi|15791399|ref|NC_002163.1|	EMBL	CDS	82019	83050	.	+	0	ID=cds-CAL34243.1;Parent=gene-Cj0069;Dbxref=EnsemblGenomes-Gn:Cj0069,EnsemblGenomes-Tr:CAL34243,UniProtKB/TrEMBL:Q0PC64,NCBI_GP:CAL34243.1;Name=CAL34243.1;Note=Original (2000) note: Cj0069%2C unknown%2C len: 343 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Literature search identified paper giving further clues to product function. Functional classification - Unknown%3B~PMID:14702320;gbkey=CDS;locus_tag=Cj0069;product=hypothetical protein Cj0069;protein_id=CAL34243.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	83047	83205	.	-	.	ID=gene-Cj0070c;Name=Cj0070c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0070c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	83047	83205	.	-	0	ID=cds-CAL34244.1;Parent=gene-Cj0070c;Dbxref=EnsemblGenomes-Gn:Cj0070c,EnsemblGenomes-Tr:CAL34244,UniProtKB/TrEMBL:Q0PC63,NCBI_GP:CAL34244.1;Name=CAL34244.1;Note=Original (2000) note: Cj0070c%2C questionable CDS%2Clen: 52 aa%3B no Hp match%3B~Updated (2006) note: Similar to proteins in other bacteria. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0070c;product=hypothetical protein Cj0070c;protein_id=CAL34244.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	83292	83893	.	-	.	ID=gene-Cj0072c;Name=Cj0072c;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Cj0072c;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	83654	83893	.	-	0	ID=cds-Cj0072c;Parent=gene-Cj0072c;Note=Original (2000) note: Cj0072c%2C possible iron-binding protein pseudogene%2C len: 98 aa%3B Weak similarity to members of the eukaryotic iron-binding hemerythrin family%2C e.g. HEMM_THEZO myohemerythrin (118 aa). Note that all of the iron-binding residues are conserved. No Hp match. Also similar to N-terminus of Cj1224 (50.5%25 identity in 91 aa overlap)%2C Cj0241c (40.5%25 identity in 79 aa overlap) and Cj0045c (32.5%25 identity in 83 aa overlap). Contains one frameshift%3B~Updated (2006) note: Pfam domains x2 PF01814 Hemerythrin HHE cation binding domain identified within CDS. Further support given to product function. Similar to many Campylobacter species designated as putative methy-accepting chemotaxis protein and also iron-binding proteins. No specific characterisation with acceptable identity score has been carried out yet. Thus%2C putative kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Cations;gbkey=CDS;inference=protein motif:Pfam:PF01814;locus_tag=Cj0072c;product=pseudogene (putative iron-binding protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	83292	83654	.	-	0	ID=cds-Cj0072c;Parent=gene-Cj0072c;Note=Original (2000) note: Cj0072c%2C possible iron-binding protein pseudogene%2C len: 98 aa%3B Weak similarity to members of the eukaryotic iron-binding hemerythrin family%2C e.g. HEMM_THEZO myohemerythrin (118 aa). Note that all of the iron-binding residues are conserved. No Hp match. Also similar to N-terminus of Cj1224 (50.5%25 identity in 91 aa overlap)%2C Cj0241c (40.5%25 identity in 79 aa overlap) and Cj0045c (32.5%25 identity in 83 aa overlap). Contains one frameshift%3B~Updated (2006) note: Pfam domains x2 PF01814 Hemerythrin HHE cation binding domain identified within CDS. Further support given to product function. Similar to many Campylobacter species designated as putative methy-accepting chemotaxis protein and also iron-binding proteins. No specific characterisation with acceptable identity score has been carried out yet. Thus%2C putative kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Cations;gbkey=CDS;inference=protein motif:Pfam:PF01814;locus_tag=Cj0072c;product=pseudogene (putative iron-binding protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	83523	83654	.	-	.	ID=id-Cj0072c;Note=HMMPfam hit to PF01814%2C Hemerythrin HHE cation binding domain%2C score 2.9;gbkey=misc_feature;inference=protein motif:Pfam:PF01814;locus_tag=Cj0072c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	83654	83686	.	-	.	ID=id-Cj0072c;Note=HMMPfam hit to PF01814%2C Hemerythrin HHE cation binding domain%2C score 2.9;gbkey=misc_feature;inference=protein motif:Pfam:PF01814;locus_tag=Cj0072c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	83696	83866	.	-	.	ID=id-Cj0072c-2;Note=HMMPfam hit to PF01814%2C Hemerythrin HHE cation binding domain%2C score 0.007;gbkey=misc_feature;inference=protein motif:Pfam:PF01814;locus_tag=Cj0072c
gi|15791399|ref|NC_002163.1|	EMBL	gene	84087	84743	.	-	.	ID=gene-Cj0073c;Name=Cj0073c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0073c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	84087	84743	.	-	0	ID=cds-CAL34246.1;Parent=gene-Cj0073c;Dbxref=EnsemblGenomes-Gn:Cj0073c,EnsemblGenomes-Tr:CAL34246,InterPro:IPR003741,InterPro:IPR024185,UniProtKB/TrEMBL:Q0PC62,NCBI_GP:CAL34246.1;Name=CAL34246.1;Note=Original (2000) note: Cj0073c%2C unknown%2C len: 218 aa%3B similar to hypothetical proteins e.g. YKGG_ECOLI (282 aa)%2C fasta scores%3B opt: 215 z-score: 231.0 E(): 1.3e-05%2C32.2%25 identity in 146 aa overlap. 41.8%25 identity to HP0137%3B~Updated (2006) note: Pfam domain PF02589 Uncharacterized ACR%2C YkgG family COG1556 identified within CDS. Conserved added to product function. Literature search identified paper giving further clues to product function. Functional classification - Conserved hypothetical proteins%3B~PMID:15773975;gbkey=CDS;inference=protein motif:Pfam:PF02589;locus_tag=Cj0073c;product=conserved hypothetical protein Cj0073c;protein_id=CAL34246.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	84090	84470	.	-	.	ID=id-Cj0073c;Note=HMMPfam hit to PF02589%2C Uncharacterized ACR%2C YkgG family COG1556%2C score 1.2e-29;gbkey=misc_feature;inference=protein motif:Pfam:PF02589;locus_tag=Cj0073c
gi|15791399|ref|NC_002163.1|	EMBL	gene	84736	86175	.	-	.	ID=gene-Cj0074c;Name=Cj0074c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0074c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	84736	86175	.	-	0	ID=cds-CAL34247.1;Parent=gene-Cj0074c;Dbxref=EnsemblGenomes-Gn:Cj0074c,EnsemblGenomes-Tr:CAL34247,GOA:Q0PC61,InterPro:IPR003741,InterPro:IPR004452,InterPro:IPR009051,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR024185,InterPro:IPR024569,UniProtKB/TrEMBL:Q0PC61,NCBI_GP:CAL34247.1;Name=CAL34247.1;Note=Original (2000) note: Cj0074c%2C probable iron-sulfur protein%2C len: 479 aa%3B similar to hypothetical proteins e.g. YKGF_ECOLI (475 aa)%2C fasta scores%3B opt: 1142 z-score: 1335.9 E(): 0%2C 38.3%25 identity in 462 aa overlap. 58.1%25 identity to HP0138. Contains 2x PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature and 2x Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains.%2C scores 13.80%2C E-value 0.0095%2C and 12.30%2C E-value 0.026%3B~Updated (2006) note: No specific characterisation with acceptable identity scores. Thus%2C putative kept within product function. Functional classification -Energy metabolism - Electron transport%3B~PMID:15773975;gbkey=CDS;inference=protein motif:Prosite:PS00198;locus_tag=Cj0074c;product=putative iron-sulfur protein;protein_id=CAL34247.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	85042	85113	.	-	.	ID=id-Cj0074c;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.00065;gbkey=misc_feature;inference=protein motif:Pfam:PF00037;locus_tag=Cj0074c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	85057	85092	.	-	.	ID=id-Cj0074c-2;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00198;locus_tag=Cj0074c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	85192	85263	.	-	.	ID=id-Cj0074c-3;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.0015;gbkey=misc_feature;inference=protein motif:Pfam:PF00037;locus_tag=Cj0074c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	85207	85242	.	-	.	ID=id-Cj0074c-4;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00198;locus_tag=Cj0074c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	85258	85296	.	-	.	ID=id-Cj0074c-5;Note=PS00018 EF-hand calcium-binding domain;gbkey=misc_feature;inference=protein motif:Prosite:PS00018;locus_tag=Cj0074c
gi|15791399|ref|NC_002163.1|	EMBL	gene	86172	86912	.	-	.	ID=gene-Cj0075c;Name=Cj0075c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0075c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	86172	86912	.	-	0	ID=cds-CAL34248.1;Parent=gene-Cj0075c;Dbxref=EnsemblGenomes-Gn:Cj0075c,EnsemblGenomes-Tr:CAL34248,InterPro:IPR004017,UniProtKB/TrEMBL:Q0PC60,NCBI_GP:CAL34248.1;Name=CAL34248.1;Note=Original (2000) note: Cj0075c%2C possible oxidoreductase iron-sulfur subunit%2C len: 246 aa%3B similar to hypothetical proteins and to the C-terminus of e.g. TR:O53142 (EMBL:AJ000942) Methanobacterium thermoautotrophicum strain Marburg%2C Thiol:fumarate reductase subunit B (488 aa)%2C fasta scores%3B opt: 217 z-score: 476.0 E(): 3e-1%2C 24.3%25 identity in 235 aa overlap. 60.7%25 identity to HP0139%3B~Updated (2006) note: Pfam domain x2 PF02754 Cysteine-rich domain identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score. Thus%2Cputative kept within product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:15773975;gbkey=CDS;inference=protein motif:Pfam:PF02754;locus_tag=Cj0075c;product=putative oxidoreductase iron-sulfur subunit;protein_id=CAL34248.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	86259	86447	.	-	.	ID=id-Cj0075c;Note=HMMPfam hit to PF02754%2C Cysteine-rich domain%2C score 7.2e-19;gbkey=misc_feature;inference=protein motif:Pfam:PF02754;locus_tag=Cj0075c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	86655	86831	.	-	.	ID=id-Cj0075c-2;Note=HMMPfam hit to PF02754%2C Cysteine-rich domain%2C score 5.1e-12;gbkey=misc_feature;inference=protein motif:Pfam:PF02754;locus_tag=Cj0075c
gi|15791399|ref|NC_002163.1|	EMBL	gene	87036	88718	.	-	.	ID=gene-Cj0076c;Name=lctP;gbkey=Gene;gene=lctP;gene_biotype=protein_coding;locus_tag=Cj0076c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	87036	88718	.	-	0	ID=cds-CAL34249.1;Parent=gene-Cj0076c;Dbxref=EnsemblGenomes-Gn:Cj0076c,EnsemblGenomes-Tr:CAL34249,GOA:Q0PC59,InterPro:IPR003804,UniProtKB/TrEMBL:Q0PC59,NCBI_GP:CAL34249.1;Name=CAL34249.1;Note=Original (2000) note: Cj0076c%2C lctP%2C probable L-lactate permease%2C len: 560 aa%3B highly similar to many e.g. LLDP_ECOLI L-lactate permease (551 aa)%2C fasta scores%3B opt: 1957 z-score: 2614.5 E(): 0%2C 54.0%25 identity in 556 aa overlap. 61.2%25 identity to HP0141 and 60.6%25 identity to HP0140%3B~Updated (2006) note: Pfam domain PF02652 L-lactate permease identified within CDS. Thirteen probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Transport/binding proteins -Carbohydrates%2C organic acids and alcohols%3B~PMID:8407843%2C PMID:11283302%2C PMID:11785976;gbkey=CDS;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;product=L-lactate permease;protein_id=CAL34249.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	87057	87125	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=1/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	87168	87236	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=2/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	87297	87365	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=3/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	87444	87512	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=4/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	87546	87605	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=5/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	87762	87830	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=6/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	87903	87956	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=7/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	88071	88139	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=8/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	88158	88226	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=9/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	88269	88364	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=10/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	88425	88493	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=11/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	88536	88595	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=12/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	88608	88676	.	-	.	ID=id-Cj0076c;Note=13 probable transmembrane helices predicted for Cj0076c by TMHMM2.0 at aa 15-37%2C 42-61%2C 76-98%2C 119-150%2C165-187%2C 194-216%2C 255-272%2C 297-319%2C 372-391%2C 403-425%2C452-474%2C 495-517 and 532-554;gbkey=misc_feature;gene=lctP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0076c;part=13/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	87081	88664	.	-	.	ID=id-Cj0076c-2;Note=HMMPfam hit to PF02652%2C L-lactate permease%2C score 1.2e-268;gbkey=misc_feature;gene=lctP;inference=protein motif:Pfam:PF02652;locus_tag=Cj0076c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	87183	87215	.	-	.	ID=id-Cj0076c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=lctP;inference=protein motif:Prosite:PS00013;locus_tag=Cj0076c
gi|15791399|ref|NC_002163.1|	EMBL	gene	88890	89459	.	-	.	ID=gene-Cj0077c;Name=cdtC;gbkey=Gene;gene=cdtC;gene_biotype=protein_coding;locus_tag=Cj0077c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	88890	89459	.	-	0	ID=cds-CAL34250.1;Parent=gene-Cj0077c;Dbxref=EnsemblGenomes-Gn:Cj0077c,EnsemblGenomes-Tr:CAL34250,GOA:Q0PC58,InterPro:IPR000772,InterPro:IPR003558,UniProtKB/TrEMBL:Q0PC58,NCBI_GP:CAL34250.1;Name=CAL34250.1;Note=Original (2000) note: Cj0077c%2C cdtC%2C cytolethal distending toxin%2C len: 189 aa%2C identical to TR:Q46102 (EMBL:U51121) cdtC (189 aa). No Hp match. Contains N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF03499 Cytolethal distending toxin C identified within CDS. Product modified to more specific family member due to motif match. Characterised within Campylobacter jejuni%2C so putative not added to product function. Functional classification -Pathogenicity%3B~PMID:10688204%2C PMID:8675309%2C PMID:11083762;gbkey=CDS;gene=cdtC;inference=protein motif:Pfam:PF03499;locus_tag=Cj0077c;product=cytolethal distending toxin C;protein_id=CAL34250.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	89040	89438	.	-	.	ID=id-Cj0077c;Note=HMMPfam hit to PF03499%2C Cytolethal distending toxin C%2C score 3.6e-81;gbkey=misc_feature;gene=cdtC;inference=protein motif:Pfam:PF03499;locus_tag=Cj0077c
gi|15791399|ref|NC_002163.1|	EMBL	gene	89470	90267	.	-	.	ID=gene-Cj0078c;Name=cdtB;gbkey=Gene;gene=cdtB;gene_biotype=protein_coding;locus_tag=Cj0078c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	89470	90267	.	-	0	ID=cds-CAL34251.1;Parent=gene-Cj0078c;Dbxref=EnsemblGenomes-Gn:Cj0078c,EnsemblGenomes-Tr:CAL34251,GOA:Q0PC57,InterPro:IPR003539,InterPro:IPR005135,UniProtKB/TrEMBL:Q0PC57,NCBI_GP:CAL34251.1;Name=CAL34251.1;Note=Original (2000) note: Cj0078c%2C cdtB%2C cytolethal distending toxin%2C len: 265 aa%3B identical toTR:Q46101 (EMBL:U51121) cdtB (265 aa) and similar to e.g. TR:Q47089 (EMBL:U03293) Escherichia coli cdtB (273 aa)%2C fasta scores%3B opt: 946 z-score: 1533.6 E(): 0%2C 55.2%25 identity in 268 aa overlap. No Hp match. Contains N-terminal signal sequence%3B~Updated (2006) note: Prosite domain PRO1388 CDTOXINB%2C Cytolethal distending toxin B signature identified within CDS. Product modified to more specific family member due to motif match. Characterised within Campylobacter jejuni%2C so putative not added to product function. Functional classification - Pathogenicity%3B~PMID:10688204%2C PMID:8675309%2C PMID:11083762;gbkey=CDS;gene=cdtB;locus_tag=Cj0078c;product=cytolethal distending toxin B;protein_id=CAL34251.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	89476	90207	.	-	.	ID=id-Cj0078c;Note=HMMPfam hit to PF03372%2CEndonuclease/Exonuclease/phosphatase fa%2C score 7.8e-23;gbkey=misc_feature;gene=cdtB;inference=protein motif:Pfam:PF03372;locus_tag=Cj0078c
gi|15791399|ref|NC_002163.1|	EMBL	gene	90264	91070	.	-	.	ID=gene-Cj0079c;Name=cdtA;gbkey=Gene;gene=cdtA;gene_biotype=protein_coding;locus_tag=Cj0079c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	90264	91070	.	-	0	ID=cds-CAL34252.1;Parent=gene-Cj0079c;Dbxref=EnsemblGenomes-Gn:Cj0079c,EnsemblGenomes-Tr:CAL34252,GOA:Q0PC56,InterPro:IPR000772,InterPro:IPR003558,InterPro:IPR015957,NCBI_GP:CAL34252.1;Name=CAL34252.1;Note=Original (2000) note: Cj0079c%2C cdtA%2C cytolethal distending toxin%2C len: 268 aa%3B identical to TR:Q46100 (EMBL:U51121) cdtB (268 aa) and similar to e.g. TR:Q47088 (EMBL:U03293) Escherichia coli cdtA (237 aa)%2C fasta scores%3B opt: 310 z-score: 408.0 E(): 1.8e-15%2C 32.7%25 identity in 159 aa overlap. No Hp match. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domain PF03498 Cytolethal distending toxin A identified within CDS. Product modified to more specific family member due to motif match. Characterised within Campylobacter jejuni%2C so putative not added to product function. Functional classification -Pathogenicity%3B~PMID:10688204%2C PMID:8675309%2C PMID:11083762;gbkey=CDS;gene=cdtA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0079c;product=cytolethal distending toxin A;protein_id=CAL34252.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	90420	90704	.	-	.	ID=id-Cj0079c;Note=HMMPfam hit to PF03498%2C Cytolethal distending toxin A%2C score 1.6e-33;gbkey=misc_feature;gene=cdtA;inference=protein motif:Pfam:PF03498;locus_tag=Cj0079c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	91005	91058	.	-	.	ID=id-Cj0079c-2;Note=1 probable transmembrane helix predicted for Cj0079c by TMHMM2.0 at aa 5-22;gbkey=misc_feature;gene=cdtA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0079c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	91011	91043	.	-	.	ID=id-Cj0079c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=cdtA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0079c
gi|15791399|ref|NC_002163.1|	EMBL	gene	91147	91416	.	+	.	ID=gene-Cj0080;Name=Cj0080;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0080
gi|15791399|ref|NC_002163.1|	EMBL	CDS	91147	91416	.	+	0	ID=cds-CAL34253.1;Parent=gene-Cj0080;Dbxref=EnsemblGenomes-Gn:Cj0080,EnsemblGenomes-Tr:CAL34253,InterPro:IPR027853,UniProtKB/TrEMBL:Q0PC55,NCBI_GP:CAL34253.1;Name=CAL34253.1;Note=Original (2000) note: Cj0080%2C possible membrane protein%2C len: 267 aa%3B no Hp match%3B Contains one possible transmembrane domain%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0080;product=putative membrane protein. Functional classification-Membranes%2C lipoproteins and porins;protein_id=CAL34253.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	91174	91233	.	+	.	ID=id-Cj0080;Note=2 probable transmembrane helices predicted for Cj0080 by TMHMM2.0 at aa 10-29 and 42-64;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0080;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	91270	91338	.	+	.	ID=id-Cj0080;Note=2 probable transmembrane helices predicted for Cj0080 by TMHMM2.0 at aa 10-29 and 42-64;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0080;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	91417	92979	.	+	.	ID=gene-Cj0081;Name=cydA;gbkey=Gene;gene=cydA;gene_biotype=protein_coding;locus_tag=Cj0081
gi|15791399|ref|NC_002163.1|	EMBL	CDS	91417	92979	.	+	0	ID=cds-CAL34254.1;Parent=gene-Cj0081;Dbxref=EnsemblGenomes-Gn:Cj0081,EnsemblGenomes-Tr:CAL34254,GOA:Q0PC54,InterPro:IPR002585,UniProtKB/TrEMBL:Q0PC54,NCBI_GP:CAL34254.1;Name=CAL34254.1;Note=Original (2000) note: Cj0081%2C cydA%2C probable cytochrome bd oxidase subunit I%2C len: 520 aa%3Bsimilar to many e.g. APPC_ECOLI cytochrome bd-ii oxidase subunit I (EC 1.10.3.-) (514 aa)%2C fasta scores%3B opt: 1412 z-score: 1888.2 E(): 0%2C 45.7%25 identity in 530 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01654 Bacterial Cytochrome Ubiquinol Oxidase identified within CDS. Also%2Cnine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:8626304%2C PMID:9068659%2C PMID:9852001;gbkey=CDS;gene=cydA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0081;product=cytochrome bd oxidase subunit I;protein_id=CAL34254.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	91441	92952	.	+	.	ID=id-Cj0081;Note=HMMPfam hit to PF01654%2C Bacterial Cytochrome Ubiquinol Oxidase%2C score 3.3e-191;gbkey=misc_feature;gene=cydA;inference=protein motif:Pfam:PF01654;locus_tag=Cj0081
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	91459	91527	.	+	.	ID=id-Cj0081-2;Note=9 probable transmembrane helices predicted for Cj0081 by TMHMM2.0 at aa 15-37%2C 56-78%2C 98-120%2C 127-149%2C186-208%2C 221-240%2C 391-413%2C 426-448 and 477-499;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0081;part=1/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	91582	91650	.	+	.	ID=id-Cj0081-2;Note=9 probable transmembrane helices predicted for Cj0081 by TMHMM2.0 at aa 15-37%2C 56-78%2C 98-120%2C 127-149%2C186-208%2C 221-240%2C 391-413%2C 426-448 and 477-499;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0081;part=2/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	91708	91776	.	+	.	ID=id-Cj0081-2;Note=9 probable transmembrane helices predicted for Cj0081 by TMHMM2.0 at aa 15-37%2C 56-78%2C 98-120%2C 127-149%2C186-208%2C 221-240%2C 391-413%2C 426-448 and 477-499;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0081;part=3/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	91795	91863	.	+	.	ID=id-Cj0081-2;Note=9 probable transmembrane helices predicted for Cj0081 by TMHMM2.0 at aa 15-37%2C 56-78%2C 98-120%2C 127-149%2C186-208%2C 221-240%2C 391-413%2C 426-448 and 477-499;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0081;part=4/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	91972	92040	.	+	.	ID=id-Cj0081-2;Note=9 probable transmembrane helices predicted for Cj0081 by TMHMM2.0 at aa 15-37%2C 56-78%2C 98-120%2C 127-149%2C186-208%2C 221-240%2C 391-413%2C 426-448 and 477-499;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0081;part=5/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	92077	92136	.	+	.	ID=id-Cj0081-2;Note=9 probable transmembrane helices predicted for Cj0081 by TMHMM2.0 at aa 15-37%2C 56-78%2C 98-120%2C 127-149%2C186-208%2C 221-240%2C 391-413%2C 426-448 and 477-499;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0081;part=6/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	92587	92655	.	+	.	ID=id-Cj0081-2;Note=9 probable transmembrane helices predicted for Cj0081 by TMHMM2.0 at aa 15-37%2C 56-78%2C 98-120%2C 127-149%2C186-208%2C 221-240%2C 391-413%2C 426-448 and 477-499;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0081;part=7/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	92692	92760	.	+	.	ID=id-Cj0081-2;Note=9 probable transmembrane helices predicted for Cj0081 by TMHMM2.0 at aa 15-37%2C 56-78%2C 98-120%2C 127-149%2C186-208%2C 221-240%2C 391-413%2C 426-448 and 477-499;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0081;part=8/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	92845	92913	.	+	.	ID=id-Cj0081-2;Note=9 probable transmembrane helices predicted for Cj0081 by TMHMM2.0 at aa 15-37%2C 56-78%2C 98-120%2C 127-149%2C186-208%2C 221-240%2C 391-413%2C 426-448 and 477-499;gbkey=misc_feature;gene=cydA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0081;part=9/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	92979	94103	.	+	.	ID=gene-Cj0082;Name=cydB;gbkey=Gene;gene=cydB;gene_biotype=protein_coding;locus_tag=Cj0082
gi|15791399|ref|NC_002163.1|	EMBL	CDS	92979	94103	.	+	0	ID=cds-CAL34255.1;Parent=gene-Cj0082;Dbxref=EnsemblGenomes-Gn:Cj0082,EnsemblGenomes-Tr:CAL34255,GOA:Q0PC53,InterPro:IPR003317,UniProtKB/TrEMBL:Q0PC53,NCBI_GP:CAL34255.1;Name=CAL34255.1;Note=Original (2000) note: Cj0082%2C cydB%2C probable cytochrome bd oxidase subunit II%2C len: 520 aa%3Bsimilar to many e.g. CYDB_ECOLI cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) (379 aa)%2C fasta scores%3B opt: 466 z-score: 449.6 E(): 8.7e-18%2C 27.7%25 identity in 386 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02322 Cytochrome oxidase subunit II identified within CDS. Also%2C nine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:8626304%2C PMID:9068659%2C PMID:9852001%2CPMID:15470119;gbkey=CDS;gene=cydB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0082;product=cytochrome bd oxidase subunit II;protein_id=CAL34255.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	93000	94061	.	+	.	ID=id-Cj0082;Note=HMMPfam hit to PF02322%2C Cytochrome oxidase subunit II%2C score 3.5e-13;gbkey=misc_feature;gene=cydB;inference=protein motif:Pfam:PF02322;locus_tag=Cj0082
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	93006	93071	.	+	.	ID=id-Cj0082-2;Note=9 probable transmembrane helices predicted for Cj0082 by TMHMM2.0 at aa 10-31%2C 59-81%2C 86-108%2C 129-151%2C175-197%2C 210-229%2C 249-271%2C 284-306 and 332-354;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0082;part=1/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	93153	93221	.	+	.	ID=id-Cj0082-2;Note=9 probable transmembrane helices predicted for Cj0082 by TMHMM2.0 at aa 10-31%2C 59-81%2C 86-108%2C 129-151%2C175-197%2C 210-229%2C 249-271%2C 284-306 and 332-354;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0082;part=2/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	93234	93302	.	+	.	ID=id-Cj0082-2;Note=9 probable transmembrane helices predicted for Cj0082 by TMHMM2.0 at aa 10-31%2C 59-81%2C 86-108%2C 129-151%2C175-197%2C 210-229%2C 249-271%2C 284-306 and 332-354;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0082;part=3/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	93363	93431	.	+	.	ID=id-Cj0082-2;Note=9 probable transmembrane helices predicted for Cj0082 by TMHMM2.0 at aa 10-31%2C 59-81%2C 86-108%2C 129-151%2C175-197%2C 210-229%2C 249-271%2C 284-306 and 332-354;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0082;part=4/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	93501	93569	.	+	.	ID=id-Cj0082-2;Note=9 probable transmembrane helices predicted for Cj0082 by TMHMM2.0 at aa 10-31%2C 59-81%2C 86-108%2C 129-151%2C175-197%2C 210-229%2C 249-271%2C 284-306 and 332-354;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0082;part=5/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	93606	93665	.	+	.	ID=id-Cj0082-2;Note=9 probable transmembrane helices predicted for Cj0082 by TMHMM2.0 at aa 10-31%2C 59-81%2C 86-108%2C 129-151%2C175-197%2C 210-229%2C 249-271%2C 284-306 and 332-354;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0082;part=6/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	93723	93791	.	+	.	ID=id-Cj0082-2;Note=9 probable transmembrane helices predicted for Cj0082 by TMHMM2.0 at aa 10-31%2C 59-81%2C 86-108%2C 129-151%2C175-197%2C 210-229%2C 249-271%2C 284-306 and 332-354;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0082;part=7/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	93828	93896	.	+	.	ID=id-Cj0082-2;Note=9 probable transmembrane helices predicted for Cj0082 by TMHMM2.0 at aa 10-31%2C 59-81%2C 86-108%2C 129-151%2C175-197%2C 210-229%2C 249-271%2C 284-306 and 332-354;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0082;part=8/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	93972	94040	.	+	.	ID=id-Cj0082-2;Note=9 probable transmembrane helices predicted for Cj0082 by TMHMM2.0 at aa 10-31%2C 59-81%2C 86-108%2C 129-151%2C175-197%2C 210-229%2C 249-271%2C 284-306 and 332-354;gbkey=misc_feature;gene=cydB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0082;part=9/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	94297	94992	.	-	.	ID=gene-Cj0085c;Name=Cj0085c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0085c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	94297	94992	.	-	0	ID=cds-CAL34256.1;Parent=gene-Cj0085c;Dbxref=EnsemblGenomes-Gn:Cj0085c,EnsemblGenomes-Tr:CAL34256,GOA:Q0PC52,InterPro:IPR001920,InterPro:IPR004380,InterPro:IPR015942,UniProtKB/TrEMBL:Q0PC52,NCBI_GP:CAL34256.1;Name=CAL34256.1;Note=Original (2000) note: Cj0085c%2C probable amino acid recemase%2C len: 231 aa%3B similar to members of the aspartate/glutamate racemases family e.g. YGEA_ECOLI (230 aa)%2C fasta scores%3B opt: 667 z-score: 1155.6 E(): 0%2C 46.7%25 identity in 225 aa overlap%2C and RACD_STRTR aspartate racemase (243 aa)%2C fasta scores%3B opt: 254 z-score: 230.9 E(): 1.3e-05%2C 25.4%25 identity in 232 aa overlap. No Hp match. Contains PS00924 Aspartate and glutamate racemases signature 2 andPfam match to entry PF01177 Asp_Glu_race%2CAspartate / glutamate racemase%2C score 108.40%2C E-value 1.3e-28%3B~Updated (2006) note: Pfam domain PF01177 Asp/Glu/Hydantoin racemase identified within CDS. No specific characterisation with acceptable identity score identified. Thus%2C putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS00924;locus_tag=Cj0085c;product=putative amino acid recemase;protein_id=CAL34256.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	94309	94986	.	-	.	ID=id-Cj0085c;Note=HMMPfam hit to PF01177%2C Asp/Glu/Hydantoin racemase%2Cscore 4.8e-67;gbkey=misc_feature;inference=protein motif:Pfam:PF01177;locus_tag=Cj0085c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	94387	94419	.	-	.	ID=id-Cj0085c-2;Note=PS00924 Aspartate and glutamate racemases signature 2;gbkey=misc_feature;inference=protein motif:Prosite:PS00924;locus_tag=Cj0085c
gi|15791399|ref|NC_002163.1|	EMBL	gene	95108	95803	.	-	.	ID=gene-Cj0086c;Name=ung;gbkey=Gene;gene=ung;gene_biotype=protein_coding;locus_tag=Cj0086c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	95108	95803	.	-	0	ID=cds-CAL34257.1;Parent=gene-Cj0086c;Dbxref=EnsemblGenomes-Gn:Cj0086c,EnsemblGenomes-Tr:CAL34257,GOA:Q9PJ40,InterPro:IPR002043,InterPro:IPR005122,InterPro:IPR018085,NCBI_GP:CAL34257.1;Name=CAL34257.1;Note=Original (2000) note: Cj0086c%2C ung%2C probable uracil-DNA glycosylase%2C len: 231 aa%3B similar to mnay e.g.UNG_BORBU uracil-DNA glycosylase (EC 3.2.2.-) (223 aa)%2C fasta scores%3B opt: 765 z-score: 1221.9 E(): 0%2C 51.8%25 identity in 222 aa overlap. 47.8%25 identity to HP1347. Contains PS00130 Uracil-DNA glycosylase signature and Pfam match to entry PF00315 UNG%2C Uracil-DNA glycosylase%2C score 334.90%2C E-value 9e-97%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Appropriate motifs present. Thus%2C putative not added to product function. Functional classification - DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:2836397%2C PMID:1429601;gbkey=CDS;gene=ung;inference=protein motif:Prosite:PS00130;locus_tag=Cj0086c;product=uracil-DNA glycosylase;protein_id=CAL34257.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	95147	95623	.	-	.	ID=id-Cj0086c;Note=HMMPfam hit to PF03167%2C Uracil DNA glycosylase superfamily%2C score 1.6e-73;gbkey=misc_feature;gene=ung;inference=protein motif:Pfam:PF03167;locus_tag=Cj0086c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	95576	95605	.	-	.	ID=id-Cj0086c-2;Note=PS00130 Uracil-DNA glycosylase signature;gbkey=misc_feature;gene=ung;inference=protein motif:Prosite:PS00130;locus_tag=Cj0086c
gi|15791399|ref|NC_002163.1|	EMBL	gene	96074	97480	.	+	.	ID=gene-Cj0087;Name=aspA;gbkey=Gene;gene=aspA;gene_biotype=protein_coding;locus_tag=Cj0087
gi|15791399|ref|NC_002163.1|	EMBL	CDS	96074	97480	.	+	0	ID=cds-CAL34258.1;Parent=gene-Cj0087;Dbxref=EnsemblGenomes-Gn:Cj0087,EnsemblGenomes-Tr:CAL34258,GOA:Q0PC50,InterPro:IPR000362,InterPro:IPR004708,InterPro:IPR008948,InterPro:IPR018951,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,UniProtKB/TrEMBL:Q0PC50,NCBI_GP:CAL34258.1;Name=CAL34258.1;Note=Original (2000) note: Cj0087%2C aspA%2C aspartate ammonia-lyase%2C len: 468 aa%3B similar to many e.g.ASPA_ECOLI aspartate ammonia-lyase (EC 4.3.1.1) (ASPAR (478 aa)%2Cfasta scores%3B opt: 1853 z-score: 2526.1 E(): 0%2C 58.2%25 identity in 466 aa overlap%2C 67.5%25 identity to HP0649. Contains PS00163 Fumarate lyases signature and Pfam match to entry PF00206 lyase_1%2C Lyases%2C score 615.50%2C E-value 3.1e-181%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Central intermediary metabolism -General%3B~PMID:2699932;gbkey=CDS;gene=aspA;inference=protein motif:Prosite:PS00163;locus_tag=Cj0087;product=aspartate ammonia-lyase;protein_id=CAL34258.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	96104	97099	.	+	.	ID=id-Cj0087;Note=HMMPfam hit to PF00206%2C Lyase%2C score 1.2e-151;gbkey=misc_feature;gene=aspA;inference=protein motif:Pfam:PF00206;locus_tag=Cj0087
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	97022	97051	.	+	.	ID=id-Cj0087-2;Note=PS00163 Fumarate lyases signature;gbkey=misc_feature;gene=aspA;inference=protein motif:Prosite:PS00163;locus_tag=Cj0087
gi|15791399|ref|NC_002163.1|	EMBL	gene	97496	98833	.	+	.	ID=gene-Cj0088;Name=dcuA;gbkey=Gene;gene=dcuA;gene_biotype=protein_coding;locus_tag=Cj0088
gi|15791399|ref|NC_002163.1|	EMBL	CDS	97496	98833	.	+	0	ID=cds-CAL34259.1;Parent=gene-Cj0088;Dbxref=EnsemblGenomes-Gn:Cj0088,EnsemblGenomes-Tr:CAL34259,GOA:Q0PC49,InterPro:IPR004668,UniProtKB/TrEMBL:Q0PC49,NCBI_GP:CAL34259.1;Name=CAL34259.1;Note=Original (2000) note: Cj0088%2C dcuA%2C probable anaerobic C4-dicarboxylate transporter%2C len: 445 aa%3B highly similar to many e.g. DCUA_ECOLI anaerobic C4-dicarboxylate transporter dcuA (433 aa)%2C fasta scores%3B opt: 1484 z-score: 1900.4 E(): 0%2C 53.6%25 identity in 442 aa overlap. 61.0%25 identity to HP0724%3B~Updated (2006) note: Pfam domain PF03605 Anaerobic c4-dicarboxylate membrane transport protein identified within CDS. Twelve probable transmembrane helices predicted by TMHMM2.0. Characterised within Wolinella succinogenes (PMID:11004174) and Escherichia coli with acceptable identity score. Thus%2C putative removed from product function. Functional classification -Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:11004174;gbkey=CDS;gene=dcuA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0088;product=anaerobic C4-dicarboxylate transporter;protein_id=CAL34259.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	97502	97555	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=1/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	97568	97621	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=2/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	97640	97708	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=3/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	97766	97834	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=4/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	97895	97963	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=5/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	98006	98074	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=6/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	98183	98242	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=7/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	98270	98338	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=8/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	98396	98464	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=9/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	98507	98575	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=10/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	98633	98701	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=11/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	98759	98827	.	+	.	ID=id-Cj0088;Note=12 probable transmembrane helices predicted for Cj0088 by TMHMM2.0 at aa 3-20%2C 25-42%2C 49-71%2C 91-113%2C134-156%2C 171-193%2C 230-249%2C 259-281%2C 301-323%2C 338-360%2C380-402 and 422-444;gbkey=misc_feature;gene=dcuA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0088;part=12/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	97517	98608	.	+	.	ID=id-Cj0088-2;Note=HMMPfam hit to PF03605%2C Anaerobic c4-dicarboxylate membrane transpo%2C score 3.9e-245;gbkey=misc_feature;gene=dcuA;inference=protein motif:Pfam:PF03605;locus_tag=Cj0088
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	98012	98044	.	+	.	ID=id-Cj0088-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=dcuA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0088
gi|15791399|ref|NC_002163.1|	EMBL	gene	98941	100302	.	+	.	ID=gene-Cj0089;Name=Cj0089;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0089
gi|15791399|ref|NC_002163.1|	EMBL	CDS	98941	100302	.	+	0	ID=cds-CAL34260.1;Parent=gene-Cj0089;Dbxref=EnsemblGenomes-Gn:Cj0089,EnsemblGenomes-Tr:CAL34260,UniProtKB/TrEMBL:Q0PC48,NCBI_GP:CAL34260.1;Name=CAL34260.1;Note=Original (2000) note: Cj0089%2C probable lipoprotein%2Clen: 453 aa%3B 27.4%25 identity to HP0018. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0089;product=putative lipoprotein;protein_id=CAL34260.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	98968	99000	.	+	.	ID=id-Cj0089;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0089
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	99313	99414	.	+	.	ID=id-Cj0089-2;Note=HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 1.4;gbkey=misc_feature;inference=protein motif:Pfam:PF07719;locus_tag=Cj0089
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	99577	99678	.	+	.	ID=id-Cj0089-3;Note=HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 0.12;gbkey=misc_feature;inference=protein motif:Pfam:PF07719;locus_tag=Cj0089
gi|15791399|ref|NC_002163.1|	EMBL	gene	100312	100680	.	+	.	ID=gene-Cj0090;Name=Cj0090;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0090
gi|15791399|ref|NC_002163.1|	EMBL	CDS	100312	100680	.	+	0	ID=cds-CAL34261.1;Parent=gene-Cj0090;Dbxref=EnsemblGenomes-Gn:Cj0090,EnsemblGenomes-Tr:CAL34261,InterPro:IPR010824,PDB:4GIO,UniProtKB/TrEMBL:Q0PC47,NCBI_GP:CAL34261.1;Name=CAL34261.1;Note=Original (2000) note: Cj0090%2C probable lipoprotein%2Clen: 122 aa%3B no Hp match. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0090;product=putative lipoprotein;protein_id=CAL34261.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	100327	100359	.	+	.	ID=id-Cj0090;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0090
gi|15791399|ref|NC_002163.1|	EMBL	gene	100704	101327	.	+	.	ID=gene-Cj0091;Name=Cj0091;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0091
gi|15791399|ref|NC_002163.1|	EMBL	CDS	100704	101327	.	+	0	ID=cds-CAL34262.1;Parent=gene-Cj0091;Dbxref=EnsemblGenomes-Gn:Cj0091,EnsemblGenomes-Tr:CAL34262,InterPro:IPR014094,UniProtKB/TrEMBL:Q0PC46,NCBI_GP:CAL34262.1;Name=CAL34262.1;Note=Original (2000) note: Cj0091%2C probable lipoprotein%2Clen: 207 aa%3B 33.5%25 identity to HP1457. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0091;product=putative lipoprotein;protein_id=CAL34262.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	100722	100781	.	+	.	ID=id-Cj0091;Note=1 probable transmembrane helix predicted for Cj0091 by TMHMM2.0 at aa 7-26;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0091
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	100731	100763	.	+	.	ID=id-Cj0091-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0091
gi|15791399|ref|NC_002163.1|	EMBL	gene	101410	102747	.	+	.	ID=gene-Cj0092;Name=Cj0092;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0092
gi|15791399|ref|NC_002163.1|	EMBL	CDS	101410	102747	.	+	0	ID=cds-CAL34263.1;Parent=gene-Cj0092;Dbxref=EnsemblGenomes-Gn:Cj0092,EnsemblGenomes-Tr:CAL34263,UniProtKB/TrEMBL:Q0PC45,NCBI_GP:CAL34263.1;Name=CAL34263.1;Note=Original (2000) note: Cj0092%2C probable periplasmic protein%2C len: 445 aa%3B no Hp match. Contains probable N-terminal signal sequence and PS00017 ATP/GTP-binding site motif A (P-loop). Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0092;product=putative periplasmic protein;protein_id=CAL34263.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	101605	101628	.	+	.	ID=id-Cj0092;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0092
gi|15791399|ref|NC_002163.1|	EMBL	gene	102757	103959	.	+	.	ID=gene-Cj0093;Name=Cj0093;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0093
gi|15791399|ref|NC_002163.1|	EMBL	CDS	102757	103959	.	+	0	ID=cds-CAL34264.1;Parent=gene-Cj0093;Dbxref=EnsemblGenomes-Gn:Cj0093,EnsemblGenomes-Tr:CAL34264,GOA:Q0PC44,InterPro:IPR005534,UniProtKB/TrEMBL:Q0PC44,NCBI_GP:CAL34264.1;Name=CAL34264.1;Note=Original (2000) note: Cj0093%2C probable periplasmic protein%2C len: 400 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0093;product=putative periplasmic protein;protein_id=CAL34264.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	104118	104426	.	+	.	ID=gene-Cj0094;Name=rplU;gbkey=Gene;gene=rplU;gene_biotype=protein_coding;locus_tag=Cj0094
gi|15791399|ref|NC_002163.1|	EMBL	CDS	104118	104426	.	+	0	ID=cds-CAL34265.1;Parent=gene-Cj0094;Dbxref=EnsemblGenomes-Gn:Cj0094,EnsemblGenomes-Tr:CAL34265,GOA:Q0PC43,InterPro:IPR001787,InterPro:IPR018258,InterPro:IPR028909,NCBI_GP:CAL34265.1;Name=CAL34265.1;Note=Original (2000) note: Cj0094%2C rplU%2C 50S ribosomal protein L21%2C len: 102 aa%3B similar to many e.g. RL21_ECOLI 50S ribosomal protein L21 (103 aa)%2C fasta scores%3B opt: 268 z-score: 457.7 E(): 3.1e-18%2C 40.8%25 identity in 103 aa overlap. 58.8%25 identity to HP0296. Contains PS01169 Ribosomal protein L21 signature and Pfam match to entry PF00829 Ribosomal_L21p%2C Ribosomal prokaryotic L21 protein%2Cscore 152.80%2C E-value 5.7e-42%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:378941%2C 8312607;gbkey=CDS;gene=rplU;inference=protein motif:Prosite:PS01169;locus_tag=Cj0094;product=50S ribosomal protein L21;protein_id=CAL34265.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	104118	104402	.	+	.	ID=id-Cj0094;Note=HMMPfam hit to PF00829%2C Ribosomal prokaryotic L21 protein%2C score 3.6e-48;gbkey=misc_feature;gene=rplU;inference=protein motif:Pfam:PF00829;locus_tag=Cj0094
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	104328	104396	.	+	.	ID=id-Cj0094-2;Note=PS01169 Ribosomal protein L21 signature;gbkey=misc_feature;gene=rplU;inference=protein motif:Prosite:PS01169;locus_tag=Cj0094
gi|15791399|ref|NC_002163.1|	EMBL	gene	104437	104691	.	+	.	ID=gene-Cj0095;Name=rpmA;gbkey=Gene;gene=rpmA;gene_biotype=protein_coding;locus_tag=Cj0095
gi|15791399|ref|NC_002163.1|	EMBL	CDS	104437	104691	.	+	0	ID=cds-CAL34266.1;Parent=gene-Cj0095;Dbxref=EnsemblGenomes-Gn:Cj0095,EnsemblGenomes-Tr:CAL34266,GOA:Q9PJ31,InterPro:IPR001684,InterPro:IPR018261,NCBI_GP:CAL34266.1;Name=CAL34266.1;Note=Original (2000) note: Cj0095%2C rpmA%2C 50S ribosomal protein L27%2C len: 84 aa%3B highly similar to meny e.g. RL27_ECOLI 50S ribosomal protein L27 (84 aa)%2C fasta scores%3B opt: 334 z-score: 627.0 E(): 1.1e-27%2C 65.4%25 identity in 81 aa overlap. 85.2%25 identity to HP0297. Contains PS00831 Ribosomal protein L27 signature and Pfam match to entry PF01016 Ribosomal_L27%2C Ribosomal L27 protein%2C score 189.40%2C E-value 5.5e-53%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:8312607;gbkey=CDS;gene=rpmA;inference=protein motif:Prosite:PS00831;locus_tag=Cj0095;product=50S ribosomal protein L27;protein_id=CAL34266.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	104440	104682	.	+	.	ID=id-Cj0095;Note=HMMPfam hit to PF01016%2C Ribosomal L27 protein%2Cscore 3.7e-54;gbkey=misc_feature;gene=rpmA;inference=protein motif:Pfam:PF01016;locus_tag=Cj0095
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	104536	104580	.	+	.	ID=id-Cj0095-2;Note=PS00831 Ribosomal protein L27 signature;gbkey=misc_feature;gene=rpmA;inference=protein motif:Prosite:PS00831;locus_tag=Cj0095
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	104722	104783	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:104722..104783;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	104798	105850	.	+	.	ID=gene-Cj0096;Name=Cj0096;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0096
gi|15791399|ref|NC_002163.1|	EMBL	CDS	104798	105850	.	+	0	ID=cds-CAL34267.1;Parent=gene-Cj0096;Dbxref=EnsemblGenomes-Gn:Cj0096,EnsemblGenomes-Tr:CAL34267,GOA:Q0PC41,InterPro:IPR006073,InterPro:IPR006074,InterPro:IPR006169,InterPro:IPR014100,InterPro:IPR027417,NCBI_GP:CAL34267.1;Name=CAL34267.1;Note=Original (2000) note: Cj0096%2C probable GTP-binding protein%2C len: 350 aa%3B simlar to many members of the GTP1/OBG family e.g. OBG_BACSU spo0B-associated GTP-binding protein (428 aa)%2C fasta scores%3B opt: 920 z-score: 1171.0 E(): 0%2C 43.0%25 identity in 342 aa overlap. 55.4%25 identity to HP0303. Also similar in part to Cj0930 (27.1%25 identity in 210 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00905 GTP1/OBG family signature and Pfam match to entry PF01018 GTP1_OBG%2CGTP1/OBG family%2C score 281.40%2C E-value 1.2e-80%3B~Updated (2006) note: Charactersation work carried out within Bacillus subtilis with acceptable identity scores. Putative kept within product function. Functional classification - Conserved hypothetical proteins%3B~PMID:2537815;gbkey=CDS;inference=protein motif:Prosite:PS00905;locus_tag=Cj0096;product=GTP-binding protein;protein_id=CAL34267.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	104801	105268	.	+	.	ID=id-Cj0096;Note=HMMPfam hit to PF01018%2C GTP1/OBG%2C score 2.7e-75;gbkey=misc_feature;inference=protein motif:Pfam:PF01018;locus_tag=Cj0096
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	105272	105646	.	+	.	ID=id-Cj0096-2;Note=HMMPfam hit to PF01926%2C GTPase of unknown function%2Cscore 2.7e-33;gbkey=misc_feature;inference=protein motif:Pfam:PF01926;locus_tag=Cj0096
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	105290	105313	.	+	.	ID=id-Cj0096-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0096
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	105431	105472	.	+	.	ID=id-Cj0096-4;Note=PS00905 GTP1/OBG family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00905;locus_tag=Cj0096
gi|15791399|ref|NC_002163.1|	EMBL	gene	105955	106710	.	+	.	ID=gene-Cj0097;Name=proB;gbkey=Gene;gene=proB;gene_biotype=protein_coding;locus_tag=Cj0097
gi|15791399|ref|NC_002163.1|	EMBL	CDS	105955	106710	.	+	0	ID=cds-CAL34268.1;Parent=gene-Cj0097;Dbxref=EnsemblGenomes-Gn:Cj0097,EnsemblGenomes-Tr:CAL34268,GOA:Q9PJ29,InterPro:IPR001048,InterPro:IPR001057,InterPro:IPR005715,InterPro:IPR011529,InterPro:IPR019797,PDB:2AKO,NCBI_GP:CAL34268.1;Name=CAL34268.1;Note=Original (2000) note: Cj0097%2C proB%2C possible glutamate 5-kinase%2C len: 251 aa%3B similar to%2C but shorter than%2C many e.g. PROB_BACSU glutamate 5-kinase (EC 2.7.2.11) (365 aa)%2C fasta scores%3B opt: 502 z-score: 752.8 E(): 0%2C 37.1%25 identity in 232 aa overlap%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Appropriate motifs were also identified. Thus%2Cputative removed from product function. Functional classification - Amino acid biosynthesis - Glutamate family%3B~PMID:8083159%2C PMID:2841193%2C PMID:15502337;gbkey=CDS;gene=proB;locus_tag=Cj0097;product=glutamate 5-kinase;protein_id=CAL34268.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	105958	106638	.	+	.	ID=id-Cj0097;Note=HMMPfam hit to PF00696%2C Amino acid kinase family%2Cscore 1e-41;gbkey=misc_feature;gene=proB;inference=protein motif:Pfam:PF00696;locus_tag=Cj0097
gi|15791399|ref|NC_002163.1|	EMBL	gene	106784	107701	.	+	.	ID=gene-Cj0098;Name=fmt;gbkey=Gene;gene=fmt;gene_biotype=protein_coding;locus_tag=Cj0098
gi|15791399|ref|NC_002163.1|	EMBL	CDS	106784	107701	.	+	0	ID=cds-CAL34269.1;Parent=gene-Cj0098;Dbxref=EnsemblGenomes-Gn:Cj0098,EnsemblGenomes-Tr:CAL34269,GOA:Q9PJ28,InterPro:IPR001555,InterPro:IPR002376,InterPro:IPR005793,InterPro:IPR005794,InterPro:IPR011034,InterPro:IPR015518,NCBI_GP:CAL34269.1;Name=CAL34269.1;Note=Original (2000) note: Cj0098%2C fmt%2C probable methionyl-tRNA formyltransferase%2C len: 305 aa%3B similar to many e.g.FMT_ECOLI methionyl-tRNA formyltransferase (EC 2.1.2.9) (314 aa)%2C fasta scores%3B opt: 628 z-score: 634.5 E(): 4.4e-28%2C 37.5%25 identity in 304 aa overlap. Contains Pfam match to entry PF00551 formyl_transf%2C Formyl transferase%2C score 133.00%2C E-value 3.7e-37. 51.7%25 identity to HP1141%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:1624424;gbkey=CDS;gene=fmt;inference=protein motif:Pfam:PF00551;locus_tag=Cj0098;product=methionyl-tRNA formyltransferase;protein_id=CAL34269.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	106787	107326	.	+	.	ID=id-Cj0098;Note=HMMPfam hit to PF00551%2C Formyl transferase%2C score 4.4e-36;gbkey=misc_feature;gene=fmt;inference=protein motif:Pfam:PF00551;locus_tag=Cj0098
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	107393	107674	.	+	.	ID=id-Cj0098-2;Note=HMMPfam hit to PF02911%2C Formyl transferase%2CC-terminal domain%2C score 8e-24;gbkey=misc_feature;gene=fmt;inference=protein motif:Pfam:PF02911;locus_tag=Cj0098
gi|15791399|ref|NC_002163.1|	EMBL	gene	107664	108317	.	+	.	ID=gene-Cj0099;Name=birA;gbkey=Gene;gene=birA;gene_biotype=protein_coding;locus_tag=Cj0099
gi|15791399|ref|NC_002163.1|	EMBL	CDS	107664	108317	.	+	0	ID=cds-CAL34270.1;Parent=gene-Cj0099;Dbxref=EnsemblGenomes-Gn:Cj0099,EnsemblGenomes-Tr:CAL34270,GOA:Q0PC38,InterPro:IPR004143,InterPro:IPR004408,UniProtKB/TrEMBL:Q0PC38,NCBI_GP:CAL34270.1;Name=CAL34270.1;Note=Original (2000) note: Cj0099%2C birA%2C possible biotin--[acetyl-CoA-carboxylase] synthetase%2C len: 217 aa%3B weak similarity to e.g. SW:BIRA_BACSU P42975 birA bifunctional protein (biotin operon repressor) (biotin--[acetyl-CoA-carboxylase] synthetase) (EC 6.3.4.15)(325 aa)%2C blastp scores%3B E%3D 0.00011%2C 21%25 identity in 163 aa overlap%3B similarity does not include DNA-binding domain. 39.0%25 identity to HP1140%3B~Updated (2006) note: Pfam domain PF03099 Biotin/lipoate A/B protein ligase family identified within CDS. Further support given to product function. Specific characterisation with acceptable identity scores not yet carried out. Thus%2C putative kept within product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Biotin;gbkey=CDS;gene=birA;inference=protein motif:Pfam:PF03099;locus_tag=Cj0099;product=putative biotin--[acetyl-CoA-carboxylase] synthetase;protein_id=CAL34270.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	107694	108083	.	+	.	ID=id-Cj0099;Note=HMMPfam hit to PF03099%2C Biotin/lipoate A/B protein ligase famil%2C score 2e-13;gbkey=misc_feature;gene=birA;inference=protein motif:Pfam:PF03099;locus_tag=Cj0099
gi|15791399|ref|NC_002163.1|	EMBL	gene	108314	109099	.	+	.	ID=gene-Cj0100;Name=Cj0100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0100
gi|15791399|ref|NC_002163.1|	EMBL	CDS	108314	109099	.	+	0	ID=cds-CAL34271.1;Parent=gene-Cj0100;Dbxref=EnsemblGenomes-Gn:Cj0100,EnsemblGenomes-Tr:CAL34271,InterPro:IPR002586,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PC37,NCBI_GP:CAL34271.1;Name=CAL34271.1;Note=Original (2000) note: Cj0100%2C putative parA family protein%2C len: 261 aa%3B similar to members of the parA family e.g. SOJ_BACSU soj protein (253 aa) fasta scores%3B opt: 762 z-score: 1251.6 E(): 0%2C 46.3%25 identity in 259 aa overlap. 61.1%25 identity to HP1139. Contains Pfam match to entry PF00991 ParA%2C ParA family ATPase%2C score 118.40%2CE-value 1.3e-31%3B~Updated (2006) note: Pfam domain PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain identified within CDS. This family consists of putative cobyrinic acid a%2Cc-diamide synthases family protein. Some characterisation work within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification - Cell division%3B~PMID:8071208;gbkey=CDS;inference=protein motif:Pfam:PF01656;locus_tag=Cj0100;product=parA family protein;protein_id=CAL34271.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	108326	109006	.	+	.	ID=id-Cj0100;Note=HMMPfam hit to PF01656%2C CobQ/CobB/MinD/ParA nucleotide binding domai%2C score 9.4e-53;gbkey=misc_feature;inference=protein motif:Pfam:PF01656;locus_tag=Cj0100
gi|15791399|ref|NC_002163.1|	EMBL	gene	109105	109941	.	+	.	ID=gene-Cj0101;Name=Cj0101;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0101
gi|15791399|ref|NC_002163.1|	EMBL	CDS	109105	109941	.	+	0	ID=cds-CAL34272.1;Parent=gene-Cj0101;Dbxref=EnsemblGenomes-Gn:Cj0101,EnsemblGenomes-Tr:CAL34272,GOA:Q9PJ25,InterPro:IPR003115,InterPro:IPR004437,NCBI_GP:CAL34272.1;Name=CAL34272.1;Note=Original (2000) note: Cj0101%2C putative parB family protein%2C len: 278 aa%3B similar to members of the parB family e.g.SP0J_BACSU stage 0 sporulation protein J (282 aa)%2C fasta scores%3B opt: 563 z-score: 842.8 E(): 0%2C 36.1%25 identity in 288 aa overlap. 41.7%25 identity to HP1138 plasmid replication-partition related protein. Contains helix-turn-helix motif (Score 1486%2C +4.25 SD)%3B~Updated (2006) note: Pfam domain PF02195 ParB-like nuclease domain identified within CDS. Some characterisation within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification - Cell division%3B~PMID:1900505%2C PMID:8071208;gbkey=CDS;inference=protein motif:Pfam:PF02195;locus_tag=Cj0101;product=parB family protein;protein_id=CAL34272.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	109198	109467	.	+	.	ID=id-Cj0101;Note=HMMPfam hit to PF02195%2C ParB-like nuclease domain%2Cscore 2.7e-34;gbkey=misc_feature;inference=protein motif:Pfam:PF02195;locus_tag=Cj0101
gi|15791399|ref|NC_002163.1|	EMBL	gene	110002	110427	.	+	.	ID=gene-Cj0102;Name=atpF;gbkey=Gene;gene=atpF;gene_biotype=protein_coding;locus_tag=Cj0102
gi|15791399|ref|NC_002163.1|	EMBL	CDS	110002	110427	.	+	0	ID=cds-CAL34273.1;Parent=gene-Cj0102;Dbxref=EnsemblGenomes-Gn:Cj0102,EnsemblGenomes-Tr:CAL34273,GOA:Q0PC35,InterPro:IPR002146,UniProtKB/TrEMBL:Q0PC35,NCBI_GP:CAL34273.1;Name=CAL34273.1;Note=Original (2000) note: Cj0102%2C atpF'%2C probable ATP synthase F0 sector B' subunit%2C len: 141 aa%3B some similarity to e.g. ATPF_BACP3 ATP synthase B chain precursor (EC 3.6.1.34) (163 aa)%2C fasta scores%3B opt: 160 z-score: 227.5 E(): 2e-05%2C 20.9%25 identity in 129 aa overlap. 25.4%25 identity to HP1137. Contains Pfam match to entry PF00430 ATP-synt_B%2C ATP synthase B/B' CF(0)%2C score 42.80%2C E-value 6.3e-11%3B~Updated (2006) note: Characterised within Escherichia coli%2C however identity scores were marginal. Appropriate motifs were identified. Putative not added to product function. Functional classification - Energy metabolism - ATP-proton motive force%3B~PMID:6278247%2C PMID:8276830%2C PMID:9614129%2CPMID:11768298%2C PMID:7961438;gbkey=CDS;gene=atpF;inference=protein motif:Pfam:PF00430;locus_tag=Cj0102;product=ATP synthase F0 sector B' subunit;protein_id=CAL34273.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	110026	110418	.	+	.	ID=id-Cj0102;Note=HMMPfam hit to PF00430%2C ATP synthase B/B' CF(0)%2Cscore 1.5e-06;gbkey=misc_feature;gene=atpF;inference=protein motif:Pfam:PF00430;locus_tag=Cj0102
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	110029	110088	.	+	.	ID=id-Cj0102-2;Note=1 probable transmembrane helix predicted for Cj0102 by TMHMM2.0 at aa 10-29;gbkey=misc_feature;gene=atpF;inference=protein motif:TMHMM:2.0;locus_tag=Cj0102
gi|15791399|ref|NC_002163.1|	EMBL	gene	110438	110950	.	+	.	ID=gene-Cj0103;Name=atpF;gbkey=Gene;gene=atpF;gene_biotype=protein_coding;locus_tag=Cj0103
gi|15791399|ref|NC_002163.1|	EMBL	CDS	110438	110950	.	+	0	ID=cds-CAL34274.1;Parent=gene-Cj0103;Dbxref=EnsemblGenomes-Gn:Cj0103,EnsemblGenomes-Tr:CAL34274,GOA:Q0PC34,InterPro:IPR002146,UniProtKB/TrEMBL:Q0PC34,NCBI_GP:CAL34274.1;Name=CAL34274.1;Note=Original (2000) note: Cj0103%2C atpF%2C probable ATP synthase F0 sector B subunit%2C len: 170 aa%3B some similarity to e.g. ATPF_ENTHR ATP synthase B chain (EC 3.6.1.34) (174 aa)%2C fasta scores%3B opt: 165 z-score: 246.4 E(): 1.8e-06%2C27.5%25 identity in 131 aa overlap. 31.9%25 identity to HP1136%3B~Updated (2006) note: Characterised within Escherichia coli%2C however identity scores were marginal. Appropriate motifs were identified. Putative not added to product function. Functional classification - Energy metabolism - ATP-proton motive force%3B~PMID:6278247%2C PMID:8276830%2C PMID:9614129%2CPMID:11768298%2C PMID:7961438;gbkey=CDS;gene=atpF;locus_tag=Cj0103;product=ATP synthase F0 sector B subunit;protein_id=CAL34274.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	110450	110503	.	+	.	ID=id-Cj0103;Note=2 probable transmembrane helices predicted for Cj0103 by TMHMM2.0 at aa 5-22 and 27-49;gbkey=misc_feature;gene=atpF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0103;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	110516	110584	.	+	.	ID=id-Cj0103;Note=2 probable transmembrane helices predicted for Cj0103 by TMHMM2.0 at aa 5-22 and 27-49;gbkey=misc_feature;gene=atpF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0103;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	110513	110923	.	+	.	ID=id-Cj0103-2;Note=HMMPfam hit to PF00430%2C ATP synthase B/B' CF(0)%2Cscore 0.00034;gbkey=misc_feature;gene=atpF;inference=protein motif:Pfam:PF00430;locus_tag=Cj0103
gi|15791399|ref|NC_002163.1|	EMBL	gene	110953	111474	.	+	.	ID=gene-Cj0104;Name=atpH;gbkey=Gene;gene=atpH;gene_biotype=protein_coding;locus_tag=Cj0104
gi|15791399|ref|NC_002163.1|	EMBL	CDS	110953	111474	.	+	0	ID=cds-CAL34275.1;Parent=gene-Cj0104;Dbxref=EnsemblGenomes-Gn:Cj0104,EnsemblGenomes-Tr:CAL34275,GOA:Q0PC33,InterPro:IPR000711,InterPro:IPR026015,NCBI_GP:CAL34275.1;Name=CAL34275.1;Note=Original (2000) note: Cj0104%2C atpH%2C probable ATP synthase F1 sector delta subunit%2C len: 173 aa%3B similar to e.g. ATPD_ECOLI ATP synthase delta chain (EC 3.6.1.34) (177 aa)%2C fasta scores%3B opt: 135 z-score: 234.1 E(): 8.8e-06%2C 27.6%25 identity in 145 aa overlap. No Hp match. Contains Pfam match to entry PF00213 OSCP%2C ATP synthase delta (OSCP) subunit%2C score 53.70%2C E-value 8.2e-15%3B~Updated (2006) note: Characterised within Escherichia coli%2C however identity scores were marginal. Appropriate motifs were identified. Putative not added to product function. Functional classification - Energy metabolism - ATP-proton motive force%3B~PMID:6278247%2C PMID:8276830%2C PMID:7957212%2CPMID:11768298%2C PMID:7961438;gbkey=CDS;gene=atpH;inference=protein motif:Pfam:PF00213;locus_tag=Cj0104;product=ATP synthase F1 sector delta subunit;protein_id=CAL34275.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	110965	111414	.	+	.	ID=id-Cj0104;Note=HMMPfam hit to PF00213%2C ATP synthase delta (OSCP) subunit%2C score 1.1e-07;gbkey=misc_feature;gene=atpH;inference=protein motif:Pfam:PF00213;locus_tag=Cj0104
gi|15791399|ref|NC_002163.1|	EMBL	gene	111488	112993	.	+	.	ID=gene-Cj0105;Name=atpA;gbkey=Gene;gene=atpA;gene_biotype=protein_coding;locus_tag=Cj0105
gi|15791399|ref|NC_002163.1|	EMBL	CDS	111488	112993	.	+	0	ID=cds-CAL34276.1;Parent=gene-Cj0105;Dbxref=EnsemblGenomes-Gn:Cj0105,EnsemblGenomes-Tr:CAL34276,GOA:Q9PJ21,InterPro:IPR000194,InterPro:IPR000793,InterPro:IPR004100,InterPro:IPR005294,InterPro:IPR020003,InterPro:IPR023366,InterPro:IPR027417,NCBI_GP:CAL34276.1;Name=CAL34276.1;Note=Original (2000) note: Cj0105%2C atpA%2C probable ATP synthase F1 sector alpha subunit%2C len: 501 aa%3B similar to e.g. ATPA_ENTHR ATP synthase alpha chain (EC 3.6.1.34) (518 aa)%2C fasta scores%3B opt: 2114 z-score: 2501.4 E(): 0%2C64.4%25 identity in 497 aa overlap. 75.0%25 identity to HP1134. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00152 ATP synthase alpha and beta subunits signature and Pfam matches to entry PF00006 ATP-synt_ab%2CATP synthase alpha and beta subunits%2C score 643.10%2CE-value 1.5e-189 and to entry PF00422 ATP-synt_A-c%2C ATP synthase Alpha chain%2C C terminal%2C score 277.50%2C E-value 7.6e-94%3B~Updated (2006) note: Characterised within Escherichia coli%2C however identity score was marginal. Also%2C characterised within Enterococcus hirae with acceptable identity score. Appropriate motifs were identified. Putative not added to product function. Functional classification - Energy metabolism - ATP-proton motive force%3B~PMID:6278247%2C PMID:8276830%2C PMID:11768298%2CPMID:1328152%2C PMID:7961438;gbkey=CDS;gene=atpA;inference=protein motif:Prosite:PS00152;locus_tag=Cj0105;product=ATP synthase F1 sector alpha subunit;protein_id=CAL34276.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	111557	111763	.	+	.	ID=id-Cj0105;Note=HMMPfam hit to PF02874%2C ATP synthase alpha/beta family%2C beta-ba%2C score 7.9e-19;gbkey=misc_feature;gene=atpA;inference=protein motif:Pfam:PF02874;locus_tag=Cj0105
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	111929	112579	.	+	.	ID=id-Cj0105-2;Note=HMMPfam hit to PF00006%2C ATP synthase alpha/beta family%2C nucleot%2C score 3.4e-115;gbkey=misc_feature;gene=atpA;inference=protein motif:Pfam:PF00006;locus_tag=Cj0105
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	111992	112015	.	+	.	ID=id-Cj0105-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=atpA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0105
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	112550	112579	.	+	.	ID=id-Cj0105-4;Note=PS00152 ATP synthase alpha and beta subunits signature;gbkey=misc_feature;gene=atpA;inference=protein motif:Prosite:PS00152;locus_tag=Cj0105
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	112613	112927	.	+	.	ID=id-Cj0105-5;Note=HMMPfam hit to PF00306%2C ATP synthase alpha/beta chain%2C C termin%2C score 2.5e-36;gbkey=misc_feature;gene=atpA;inference=protein motif:Pfam:PF00306;locus_tag=Cj0105
gi|15791399|ref|NC_002163.1|	EMBL	gene	113002	113886	.	+	.	ID=gene-Cj0106;Name=atpG;gbkey=Gene;gene=atpG;gene_biotype=protein_coding;locus_tag=Cj0106
gi|15791399|ref|NC_002163.1|	EMBL	CDS	113002	113886	.	+	0	ID=cds-CAL34277.1;Parent=gene-Cj0106;Dbxref=EnsemblGenomes-Gn:Cj0106,EnsemblGenomes-Tr:CAL34277,GOA:Q9PJ20,InterPro:IPR000131,InterPro:IPR023633,NCBI_GP:CAL34277.1;Name=CAL34277.1;Note=Original (2000) note: Cj0106%2C atpG%2C probable ATP synthase F1 sector gamma subunit%2C len: 294 aa%3B similar to e.g. ATPG_BACSU ATP synthase gamma chain (EC 3.6.1.34) (290 aa)%2C fasta scores%3B opt: 537 z-score: 747.6 E(): 0%2C33.6%25 identity in 295 aa overlap. 52.8%25 identity to HP1133. Contains Pfam match to entry PF00231 ATP-synt%2C ATP synthase%2C score 282.80%2C E-value 4.3e-81%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity scores. Appropriate motifs were identified. Putative not added to product function. Functional classification - Energy metabolism -ATP-proton motive force%3B~PMID:6278247%2C PMID:8276830%2C PMID:11768298%2CPMID:7961438;gbkey=CDS;gene=atpG;inference=protein motif:Pfam:PF00231;locus_tag=Cj0106;product=ATP synthase F1 sector gamma subunit;protein_id=CAL34277.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	113005	113880	.	+	.	ID=id-Cj0106;Note=HMMPfam hit to PF00231%2C ATP synthase%2C score 2.8e-83;gbkey=misc_feature;gene=atpG;inference=protein motif:Pfam:PF00231;locus_tag=Cj0106
gi|15791399|ref|NC_002163.1|	EMBL	gene	113912	115309	.	+	.	ID=gene-Cj0107;Name=atpD;gbkey=Gene;gene=atpD;gene_biotype=protein_coding;locus_tag=Cj0107
gi|15791399|ref|NC_002163.1|	EMBL	CDS	113912	115309	.	+	0	ID=cds-CAL34278.1;Parent=gene-Cj0107;Dbxref=EnsemblGenomes-Gn:Cj0107,EnsemblGenomes-Tr:CAL34278,GOA:Q0PC30,InterPro:IPR000194,InterPro:IPR000793,InterPro:IPR003593,InterPro:IPR004100,InterPro:IPR005722,InterPro:IPR020003,InterPro:IPR024034,InterPro:IPR027417,NCBI_GP:CAL34278.1;Name=CAL34278.1;Note=Original (2000) note: Cj0107%2C atpD%2C probable ATP synthase F1 sector beta subunit%2C len: 465 aa%3B highly similar to many e.g. ATPB_WOLSU ATP synthase beta chain (EC 3.6.1.34) (467 aa)%2C fasta scores%3B opt: 2558 z-score: 3132.1 E(): 0%2C 83.0%25 identity in 464 aa overlap. 79.5%25 identity to HP1132. Contains PS00017 ATP /GTP-binding site motif A (P-loop)%2C PS00152 ATP synthase al pha and beta subunits signature and Pfam matches to entry P F00006 ATP-synt_ab%2C ATP synthase alpha and beta subunits%2C s core 604.00%2C E-value 9.1e-178 and to entry PF00306 ATP-synt _ab_C%2C ATP synthase ab C terminal%2C score 193.50%2C E-value 3. 4e-54%3B~Updated (2006) note: Characterised within Wolinella succinogenes with acceptable identity scores. Appropriate motifs were identified. Putative not added to product function. Functional classification - Energy metabolism -ATP-proton motive force%3B~PMID:6278247%2C PMID:8276830%2C PMID:11768298%2CPMID:7961438%2C PMID:8085791;gbkey=CDS;gene=atpD;inference=protein motif:Prosite:PS00152;locus_tag=Cj0107;product=ATP synthase F1 sector beta subunit;protein_id=CAL34278.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	113924	114136	.	+	.	ID=id-Cj0107;Note=HMMPfam hit to PF02874%2C ATP synthase alpha/beta family%2C beta-ba%2C score 4.3e-21;gbkey=misc_feature;gene=atpD;inference=protein motif:Pfam:PF02874;locus_tag=Cj0107
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	114302	114946	.	+	.	ID=id-Cj0107-2;Note=HMMPfam hit to PF00006%2C ATP synthase alpha/beta family%2C nucleot%2C score 1e-94;gbkey=misc_feature;gene=atpD;inference=protein motif:Pfam:PF00006;locus_tag=Cj0107
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	114365	114388	.	+	.	ID=id-Cj0107-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=atpD;inference=protein motif:Prosite:PS00017;locus_tag=Cj0107
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	114917	114946	.	+	.	ID=id-Cj0107-4;Note=PS00152 ATP synthase alpha and beta subunits signature;gbkey=misc_feature;gene=atpD;inference=protein motif:Prosite:PS00152;locus_tag=Cj0107
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	114983	115306	.	+	.	ID=id-Cj0107-5;Note=HMMPfam hit to PF00306%2C ATP synthase alpha/beta chain%2C C termin%2C score 7.2e-55;gbkey=misc_feature;gene=atpD;inference=protein motif:Pfam:PF00306;locus_tag=Cj0107
gi|15791399|ref|NC_002163.1|	EMBL	gene	115313	115702	.	+	.	ID=gene-Cj0108;Name=atpC;gbkey=Gene;gene=atpC;gene_biotype=protein_coding;locus_tag=Cj0108
gi|15791399|ref|NC_002163.1|	EMBL	CDS	115313	115702	.	+	0	ID=cds-CAL34279.1;Parent=gene-Cj0108;Dbxref=EnsemblGenomes-Gn:Cj0108,EnsemblGenomes-Tr:CAL34279,GOA:Q9PJ18,InterPro:IPR001469,InterPro:IPR020546,NCBI_GP:CAL34279.1;Name=CAL34279.1;Note=Original (2000) note: Cj0108%2C atpC%2C probable ATP synthase F1 sector epsilon subunit%2C len: 129 aa%3B similar to many e.g. ATPE_BACME ATP synthase epsilon chain (EC 3.6.1.34) (134 aa)%2C fasta scores%3B opt: 200 z-score: 337.5 E(): 1.5e-11%2C 32.4%25 identity in 108 aa overlap. 40.0%25 identity to HP1131. Contains Pfam match to entry PF00401 ATP-synt_DE%2C ATP synthase%2C Delta/Epsilon chain%2C score 84.00%2C E-value 4.2e-22%3B~Updated (2006) note: Characterised within Bacillus megaterium with acceptable identity scores. Appropriate motifs were identified. Putative not added to product function. Functional classification - Energy metabolism -ATP-proton motive force%3B~PMID:6278247%2C PMID:8276830%2C PMID:11768298%2CPMID:7961438%2C PMID:2894831;gbkey=CDS;gene=atpC;inference=protein motif:Pfam:PF00401;locus_tag=Cj0108;product=ATP synthase F1 sector epsilon subunit;protein_id=CAL34279.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	115322	115570	.	+	.	ID=id-Cj0108;Note=HMMPfam hit to PF02823%2C ATP synthase%2C Delta/Epsilon chain%2C beta%2C score 2.6e-21;gbkey=misc_feature;gene=atpC;inference=protein motif:Pfam:PF02823;locus_tag=Cj0108
gi|15791399|ref|NC_002163.1|	EMBL	gene	115702	116256	.	+	.	ID=gene-Cj0109;Name=exbB3;gbkey=Gene;gene=exbB3;gene_biotype=protein_coding;locus_tag=Cj0109
gi|15791399|ref|NC_002163.1|	EMBL	CDS	115702	116256	.	+	0	ID=cds-CAL34280.1;Parent=gene-Cj0109;Dbxref=EnsemblGenomes-Gn:Cj0109,EnsemblGenomes-Tr:CAL34280,GOA:Q0PC28,InterPro:IPR002898,InterPro:IPR017269,UniProtKB/TrEMBL:Q0PC28,NCBI_GP:CAL34280.1;Name=CAL34280.1;Note=Original (2000) note: Cj0109%2C exbB3%2C probable exbB/tolQ family transport protein%2C len: 184 aa%3B similar to members of the exbB/tolQ family%2C e.g. EXBB_ECOLI biopolymer transport exbB protein (244 aa)%2C fasta scores%3B opt: 208 z-score: 287.0 E(): 9.9e-09%2C 33.6%25 identity in 128 aa overlap%2C and TOLQ_ECOLI tolQ protein (230 aa)%2Cfasta scores%3B opt: 187 z-score: 280.1 E(): 2.4e-08%2C 48.4%25 identity in 62 aa overlap. 42.6%25 identity to HP1130. Also similar to Cj0179 (30.6%25 identity in 186 aa overlap) and Cj1628 (44.4%25 identity in 81 aa overlap)%3B~Updated (2006) note: Pfam domain PF01618%2CMotA/TolQ/ExbB proton channel family identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Thus%2C putative kept within product function. Functional classification - Transport/binding proteins - Other%3B~PMID:8437515%2C PMID:9371459;gbkey=CDS;gene=exbB3;inference=protein motif:Pfam:PF01618;locus_tag=Cj0109;product=putative MotA/TolQ/ExbB proton channel family protein;protein_id=CAL34280.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	115744	115812	.	+	.	ID=id-Cj0109;Note=3 probable transmembrane helices predicted for Cj0109 by TMHMM2.0 at aa 15-37%2C 96-118 and 138-160;gbkey=misc_feature;gene=exbB3;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0109;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	115987	116055	.	+	.	ID=id-Cj0109;Note=3 probable transmembrane helices predicted for Cj0109 by TMHMM2.0 at aa 15-37%2C 96-118 and 138-160;gbkey=misc_feature;gene=exbB3;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0109;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	116113	116181	.	+	.	ID=id-Cj0109;Note=3 probable transmembrane helices predicted for Cj0109 by TMHMM2.0 at aa 15-37%2C 96-118 and 138-160;gbkey=misc_feature;gene=exbB3;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0109;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	115837	116235	.	+	.	ID=id-Cj0109-2;Note=HMMPfam hit to PF01618%2C MotA/TolQ/ExbB proton channel family%2C score 1e-24;gbkey=misc_feature;gene=exbB3;inference=protein motif:Pfam:PF01618;locus_tag=Cj0109
gi|15791399|ref|NC_002163.1|	EMBL	gene	116265	116654	.	+	.	ID=gene-Cj0110;Name=exbD3;gbkey=Gene;gene=exbD3;gene_biotype=protein_coding;locus_tag=Cj0110
gi|15791399|ref|NC_002163.1|	EMBL	CDS	116265	116654	.	+	0	ID=cds-CAL34281.1;Parent=gene-Cj0110;Dbxref=EnsemblGenomes-Gn:Cj0110,EnsemblGenomes-Tr:CAL34281,GOA:Q0PC27,InterPro:IPR003400,UniProtKB/TrEMBL:Q0PC27,NCBI_GP:CAL34281.1;Name=CAL34281.1;Note=Original (2000) note: Cj0110%2C exbD3%2C probable exbD/tolR family transport protein%2C len: 129 aa%3B similar to members of the exbD/tolR family%2C e.g. EXBD_ECOLI biopolymer transport exbD protein (141 aa)%2C fasta scores%3B opt: 225 z-score: 240.1 E(): 4e-06%2C 31.1%25 identity in 132 aa overlap%2C and TOLR_ECOLI tolR protein (142 aa)%2C fasta scores%3B opt: 191 z-score: 240.1 E(): 4.1e-06%2C 27.7%25 identity in 130 aa overlap. 46.8%25 identity to HP1129. Also similar to Cj0180 (34.1%25 identity in 126 aa overlap) and Cj1629 (26.4%25 identity in 121 aa overlap)%3B~Updated (2006) note: Pfam domain PF02472 Biopolymer transport protein ExbD/TolR identified within CDS. Further support given to product function. No specific characterisation with acceptable identity scores were identified. Thus%2C putative kept within product function. Functional classification - Transport/binding proteins -Other%3B~PMID:9371459;gbkey=CDS;gene=exbD3;inference=protein motif:Pfam:PF02472;locus_tag=Cj0110;product=putative exbD/tolR family transport protein;protein_id=CAL34281.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	116271	116651	.	+	.	ID=id-Cj0110;Note=HMMPfam hit to PF02472%2C Biopolymer transport protein ExbD/TolR%2C score 7.2e-16;gbkey=misc_feature;gene=exbD3;inference=protein motif:Pfam:PF02472;locus_tag=Cj0110
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	116292	116360	.	+	.	ID=id-Cj0110-2;Note=1 probable transmembrane helix predicted for Cj0110 by TMHMM2.0 at aa 10-32;gbkey=misc_feature;gene=exbD3;inference=protein motif:TMHMM:2.0;locus_tag=Cj0110
gi|15791399|ref|NC_002163.1|	EMBL	gene	116657	117436	.	+	.	ID=gene-Cj0111;Name=Cj0111;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0111
gi|15791399|ref|NC_002163.1|	EMBL	CDS	116657	117436	.	+	0	ID=cds-CAL34282.1;Parent=gene-Cj0111;Dbxref=EnsemblGenomes-Gn:Cj0111,EnsemblGenomes-Tr:CAL34282,GOA:Q0PC26,InterPro:IPR006260,UniProtKB/TrEMBL:Q0PC26,NCBI_GP:CAL34282.1;Name=CAL34282.1;Note=Original (2000) note: Cj0111%2C possible periplasmic protein%2C len: 259 aa%3B no Hp match. Contains possible N-terminal signal sequence%3B~Updated (2006) note: Literature search identified paper (PMID:15231804) suggesting a number of differentially expressed genes (e.g. Cj0111) in microarray experiments may be co-trasncribed. Cj0111 seems to be iron induced and based on RT-PCR seems to be co-transcribed with Cj1658. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:15231804;gbkey=CDS;locus_tag=Cj0111;product=putative periplasmic protein;protein_id=CAL34282.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	116681	116749	.	+	.	ID=id-Cj0111;Note=1 probable transmembrane helix predicted for Cj0111 by TMHMM2.0 at aa 9-31;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0111
gi|15791399|ref|NC_002163.1|	EMBL	gene	117446	118654	.	+	.	ID=gene-Cj0112;Name=tolB;gbkey=Gene;gene=tolB;gene_biotype=protein_coding;locus_tag=Cj0112
gi|15791399|ref|NC_002163.1|	EMBL	CDS	117446	118654	.	+	0	ID=cds-CAL34283.1;Parent=gene-Cj0112;Dbxref=EnsemblGenomes-Gn:Cj0112,EnsemblGenomes-Tr:CAL34283,GOA:Q9PJ14,InterPro:IPR011659,InterPro:IPR014167,InterPro:IPR015943,NCBI_GP:CAL34283.1;Name=CAL34283.1;Note=Original (2000) note: Cj0112%2C probable periplasmic protein%2C len: 402 aa%3B some similarity to TOLB_HAEIN P44677 tolB protein precursor (427 aa)%2C blastp scores%3B E%3D 3.1e-09%2C 23%25 identity in 259 aa overlap. 41.0%25 identity to HP1126%3B~Updated (2006) note: Pfam domain PF04052 TolB amino-terminal domain identified within CDS. Further support given to product function. Characterisation has been carried out within Escherichia coli%2C however%2Cidentity score was not acceptable. Thus%2C putative kept within product function. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:2687247%2C PMID:7929011%2C PMID:9761825;gbkey=CDS;gene=tolB;inference=protein motif:Pfam:PF04052;locus_tag=Cj0112;product=putative TolB precursor protein;protein_id=CAL34283.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	117455	117889	.	+	.	ID=id-Cj0112;Note=HMMPfam hit to PF04052%2C TolB amino-terminal domain%2Cscore 4e-51;gbkey=misc_feature;gene=tolB;inference=protein motif:Pfam:PF04052;locus_tag=Cj0112
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	118589	118621	.	+	.	ID=id-Cj0112-2;Note=PS00284 Serpins signature;gbkey=misc_feature;gene=tolB;inference=protein motif:Prosite:PS00284;locus_tag=Cj0112
gi|15791399|ref|NC_002163.1|	EMBL	gene	118731	119228	.	+	.	ID=gene-Cj0113;Name=pal;gbkey=Gene;gene=pal;gene_biotype=protein_coding;locus_tag=Cj0113
gi|15791399|ref|NC_002163.1|	EMBL	CDS	118731	119228	.	+	0	ID=cds-CAL34284.1;Parent=gene-Cj0113;Dbxref=EnsemblGenomes-Gn:Cj0113,EnsemblGenomes-Tr:CAL34284,GOA:Q0PC24,InterPro:IPR006664,InterPro:IPR006665,InterPro:IPR014169,UniProtKB/TrEMBL:Q0PC24,NCBI_GP:CAL34284.1;Name=CAL34284.1;Note=Original (2000) note: Cj0113%2C pal%2C peptidoglycan associated lipoprotein (omp18)%2C len: 165 aa%3B identical to TR:Q46123 (EMBL:X83374) precursor of peptidoglycan associated lipoprotein (165 aa)%2C almost identical to TR:Q46099 omp18 (165 aa) (93.9%25 identity). Similar to e.g. PAL_ECOLI peptidoglycan-associated lipoprotein precursor (173 aa)%2C fasta scores%3B opt: 322 z-score: 491.5 E(): 4e-20%2C 38.5%25 identity in 169 aa overlap. 42.2%25 identity (in 109 aa overlap) to HP1125. Contains N-terminal signal sequence with appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site and Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 100.60%2C E-value 3.2e-26%3B~Updated (2006) note: Characterised within Campylobacter jejuni (PMID:8576327). Putative not added to product function. Functional classification - Membranes%2Clipoproteins and porins%3B~PMID:8576327;gbkey=CDS;gene=pal;inference=protein motif:Prosite:PS00013;locus_tag=Cj0113;product=peptidoglycan associated lipoprotein (omp18);protein_id=CAL34284.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	118755	118787	.	+	.	ID=id-Cj0113;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=pal;inference=protein motif:Prosite:PS00013;locus_tag=Cj0113
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	118911	119201	.	+	.	ID=id-Cj0113-2;Note=HMMPfam hit to PF00691%2C OmpA family%2C score 2.1e-27;gbkey=misc_feature;gene=pal;inference=protein motif:Pfam:PF00691;locus_tag=Cj0113
gi|15791399|ref|NC_002163.1|	EMBL	gene	119232	120179	.	+	.	ID=gene-Cj0114;Name=Cj0114;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0114
gi|15791399|ref|NC_002163.1|	EMBL	CDS	119232	120179	.	+	0	ID=cds-CAL34285.1;Parent=gene-Cj0114;Dbxref=EnsemblGenomes-Gn:Cj0114,EnsemblGenomes-Tr:CAL34285,InterPro:IPR011990,InterPro:IPR019734,UniProtKB/TrEMBL:Q0PC23,NCBI_GP:CAL34285.1;Name=CAL34285.1;Note=Original (2000) note: Cj0114%2C possible periplasmic protein%2C len: 315 aa%3B similar to hypothetical protein YBGF_ECOLI hypothetical 28.2 kd protein in pal-lysT intergenic region (263 aa)%2C fasta scores%3B opt: 144 z-score: 238.8 E(): 4.8e-06%2C 21.3%25 identity in 249 aa overlap. 28.6%25 identity to HP1124. Contains possible N-terminal signal sequence%3B~Updated (2006) note: Prosite PS50005 TPR_REPEAT%2CTetratricopeptide region identified within CDS. Supporting paper identifies protein as a glycoprotein. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:12186869;gbkey=CDS;inference=protein motif:Prosite:PS50005;locus_tag=Cj0114;product=putative periplasmic protein;protein_id=CAL34285.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	119934	120035	.	+	.	ID=id-Cj0114;Note=HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 0.012;gbkey=misc_feature;inference=protein motif:Pfam:PF07719;locus_tag=Cj0114
gi|15791399|ref|NC_002163.1|	EMBL	gene	120194	120763	.	+	.	ID=gene-Cj0115;Name=slyD;gbkey=Gene;gene=slyD;gene_biotype=protein_coding;locus_tag=Cj0115
gi|15791399|ref|NC_002163.1|	EMBL	CDS	120194	120763	.	+	0	ID=cds-CAL34286.1;Parent=gene-Cj0115;Dbxref=EnsemblGenomes-Gn:Cj0115,EnsemblGenomes-Tr:CAL34286,GOA:Q0PC22,InterPro:IPR001179,InterPro:IPR023566,UniProtKB/TrEMBL:Q0PC22,NCBI_GP:CAL34286.1;Name=CAL34286.1;Note=Original (2000) note: Cj0115%2C slyD%2C probable peptidyl-prolyl cis-trans isomerase%2C len: 189 aa%3B similar to many of the FKBP-type e.g. SLYD_ECOLI FKBP-type peptidyl-prolyl cis-trans isomerase (196 aa)%2C fasta scores%3B opt: 478 z-score: 296.9 E(): 2.8e-09%2C 38.5%25 identity in 200 aa overlap. 39.2%25 identity to HP1123%3B~Updated (2006) note: Prosite PS50059 FKBP_PPIASE%2CPeptidylprolyl isomerase%2C FKBP-type domain identified within CDS. Product modified to more specific family member due to motif match. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Protein translation and modification%3B~PMID:9188461;gbkey=CDS;gene=slyD;inference=protein motif:Prosite:PS50059;locus_tag=Cj0115;product=FKBP-type peptidyl-prolyl cis-trans isomerase;protein_id=CAL34286.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	120701	120733	.	+	.	ID=id-Cj0115;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=slyD;inference=protein motif:Prosite:PS00013;locus_tag=Cj0115
gi|15791399|ref|NC_002163.1|	EMBL	gene	120763	121683	.	+	.	ID=gene-Cj0116;Name=fabD;gbkey=Gene;gene=fabD;gene_biotype=protein_coding;locus_tag=Cj0116
gi|15791399|ref|NC_002163.1|	EMBL	CDS	120763	121683	.	+	0	ID=cds-CAL34287.1;Parent=gene-Cj0116;Dbxref=EnsemblGenomes-Gn:Cj0116,EnsemblGenomes-Tr:CAL34287,GOA:Q0PC21,InterPro:IPR001227,InterPro:IPR004410,InterPro:IPR014043,InterPro:IPR016035,InterPro:IPR016036,InterPro:IPR024925,UniProtKB/TrEMBL:Q0PC21,NCBI_GP:CAL34287.1;Name=CAL34287.1;Note=Original (2000) note: Cj0116%2C fabD%2C probable malonyl CoA-acyl carrier protein transacylase%2C len: 306 aa%3B similar to many e.g. FABD_ECOLI malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39) (308 aa)%2C fasta scores%3B opt: 555 z-score: 655.2 E(): 3.1e-29%2C 36.1%25 identity in 296 aa overlap. 49.5%25 identity to HP0090. Contains Pfam match to entry PF00698 Acyl_transf%2C Acyl transferase domain%2C score 58.10%2C E-value 1.9e-13%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity scores. Thus%2Cputative not added to product function. Functional classification - Fatty acid biosynthesis%3B~PMID:1339356%2C PMID:7768883%2C PMID:8759840;gbkey=CDS;gene=fabD;inference=protein motif:Pfam:PF00698;locus_tag=Cj0116;product=malonyl CoA-acyl carrier protein transacylase;protein_id=CAL34287.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	120772	121680	.	+	.	ID=id-Cj0116;Note=HMMPfam hit to PF00698%2C Acyl transferase domain%2Cscore 6.7e-07;gbkey=misc_feature;gene=fabD;inference=protein motif:Pfam:PF00698;locus_tag=Cj0116
gi|15791399|ref|NC_002163.1|	EMBL	gene	121680	122369	.	+	.	ID=gene-Cj0117;Name=pfs;gbkey=Gene;gene=pfs;gene_biotype=protein_coding;locus_tag=Cj0117
gi|15791399|ref|NC_002163.1|	EMBL	CDS	121680	122369	.	+	0	ID=cds-CAL34288.1;Parent=gene-Cj0117;Dbxref=EnsemblGenomes-Gn:Cj0117,EnsemblGenomes-Tr:CAL34288,GOA:Q0PC20,InterPro:IPR000845,InterPro:IPR010049,InterPro:IPR018017,NCBI_GP:CAL34288.1;Name=CAL34288.1;Note=Original (2000) note: Cj0117%2C pfs%2C probable 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase%2C len: 229 aa%3B similar to many e.g. PFS_ECOLI 5'-methylthioadenosine (EC 3.2.2.16) / S-adnosylhomocysteine nucleosidase (232 aa)%2C fasta scores%3B opt: 478 z-score: 817.7 E(): 0%2C 36.7%25 identity in 229 aa overlap. 50.0%25 identity to HP0089. Contains Pfam match to entry PF01048 PNP_UDP_1%2C Phosphorylase family%2C score 216.20%2C E-value 4.7e-61%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity scores. Thus%2Cputative not added to product function. Functional classification - Misc%3B~PMID:9524204;gbkey=CDS;gene=pfs;inference=protein motif:Pfam:PF01048;locus_tag=Cj0117;product=5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase;protein_id=CAL34288.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	121686	122357	.	+	.	ID=id-Cj0117;Note=HMMPfam hit to PF01048%2C Phosphorylase family%2C score 1.9e-56;gbkey=misc_feature;gene=pfs;inference=protein motif:Pfam:PF01048;locus_tag=Cj0117
gi|15791399|ref|NC_002163.1|	EMBL	gene	122366	123121	.	+	.	ID=gene-Cj0118;Name=Cj0118;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0118
gi|15791399|ref|NC_002163.1|	EMBL	CDS	122366	123121	.	+	0	ID=cds-CAL34289.1;Parent=gene-Cj0118;Dbxref=EnsemblGenomes-Gn:Cj0118,EnsemblGenomes-Tr:CAL34289,GOA:Q0PC19,InterPro:IPR011063,InterPro:IPR012089,InterPro:IPR014729,UniProtKB/TrEMBL:Q0PC19,NCBI_GP:CAL34289.1;Name=CAL34289.1;Note=Original (2000) note: Cj0118%2C unknown%2C len: 251 aa%3B similar to hypothetical proteins from many organisms e.g. YDAO_ECOLI (311 aa)%2C fasta scores%3B opt: 447 z-score: 465.6 E(): 1.1e-18%2C 32.5%25 identity in 240 aa overlap. 49.4%25 identity to HP1182. Contains Pfam match to entry PF01171 UPF0021%2C Uncharacterized protein family UPF0021%2C score -88.80%2C E-value 9.9e-05%3B~Updated (2006) note: Pfam domain PF01171 PP-loop family identified within CDS. No specific characterisation has been carried out. Thus%2C putative kept within product function. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01171;locus_tag=Cj0118;product=conserved hypothetical protein Cj0118;protein_id=CAL34289.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	122444	123043	.	+	.	ID=id-Cj0118;Note=HMMPfam hit to PF01171%2C PP-loop family%2C score 4e-14;gbkey=misc_feature;inference=protein motif:Pfam:PF01171;locus_tag=Cj0118
gi|15791399|ref|NC_002163.1|	EMBL	gene	123126	123647	.	+	.	ID=gene-Cj0119;Name=Cj0119;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0119
gi|15791399|ref|NC_002163.1|	EMBL	CDS	123126	123647	.	+	0	ID=cds-CAL34290.1;Parent=gene-Cj0119;Dbxref=EnsemblGenomes-Gn:Cj0119,EnsemblGenomes-Tr:CAL34290,GOA:Q0PC18,InterPro:IPR000868,UniProtKB/TrEMBL:Q0PC18,NCBI_GP:CAL34290.1;Name=CAL34290.1;Note=Original (2000) note: Cj0119%2C unknown%2C len: 173 aa%3B similar to a hypothetical protein from B. subtilis TR:O32091 (EMBL:Z99120) YUEJ protein (183 aa)%2C fasta scores%3B opt: 172 z-score: 282.5 E(): 1.8e-08%2C 29.5%25 identity in 166 aa overlap. No Hp match%3B~Updated (2006) note: Motif match (IPR000868) identified link to hydrolase. Product modified to more specific family member based on motif match. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;locus_tag=Cj0119;product=putative hydrolase;protein_id=CAL34290.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	123647	124261	.	+	.	ID=gene-Cj0120;Name=Cj0120;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0120
gi|15791399|ref|NC_002163.1|	EMBL	CDS	123647	124261	.	+	0	ID=cds-CAL34291.1;Parent=gene-Cj0120;Dbxref=EnsemblGenomes-Gn:Cj0120,EnsemblGenomes-Tr:CAL34291,InterPro:IPR022572,UniProtKB/TrEMBL:Q0PC17,NCBI_GP:CAL34291.1;Name=CAL34291.1;Note=Original (2000) note: Cj0120%2C unknown%2C len: 204 aa%3B 41.7%25 identity to HP0951. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0120;product=hypothetical protein Cj0120;protein_id=CAL34291.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	124258	124665	.	+	.	ID=gene-Cj0121;Name=Cj0121;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0121
gi|15791399|ref|NC_002163.1|	EMBL	CDS	124258	124665	.	+	0	ID=cds-CAL34292.1;Parent=gene-Cj0121;Dbxref=EnsemblGenomes-Gn:Cj0121,EnsemblGenomes-Tr:CAL34292,GOA:Q9PJ06,InterPro:IPR002036,InterPro:IPR020549,InterPro:IPR023091,NCBI_GP:CAL34292.1;Name=CAL34292.1;Note=Original (2000) note: Cj0121%2C unknown%2C len: 135 aa%3B similar to hypothetical proteins from many organisms e.g. YBEY_ECOLI (155 aa) fasta scores%3B opt: 218 z-score: 353.9 E(): 1.9e-12%2C 37.8%25 identity in 111 aa overlap. 59.8%25 identity to HP1160%3B~Updated (2006) note: Pfam PF02130 Uncharacterized protein family UPF0054 was present within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02130;locus_tag=Cj0121;product=conserved hypothetical protein Cj0121;protein_id=CAL34292.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	124339	124602	.	+	.	ID=id-Cj0121;Note=HMMPfam hit to PF02130%2C Uncharacterized protein family UPF0054%2C score 6.5e-36;gbkey=misc_feature;inference=protein motif:Pfam:PF02130;locus_tag=Cj0121
gi|15791399|ref|NC_002163.1|	EMBL	gene	124789	125478	.	+	.	ID=gene-Cj0122;Name=Cj0122;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0122
gi|15791399|ref|NC_002163.1|	EMBL	CDS	124789	125478	.	+	0	ID=cds-CAL34293.1;Parent=gene-Cj0122;Dbxref=EnsemblGenomes-Gn:Cj0122,EnsemblGenomes-Tr:CAL34293,UniProtKB/TrEMBL:Q0PC15,NCBI_GP:CAL34293.1;Name=CAL34293.1;Note=Original (2000) note: Cj0122%2C unknown%2C len: 229 aa%3B no Hp match. Similar in C-terminus to Cj0055c (46.6%25 identity in 148 aa overlap)%2C and in N-terminus to Cj0416 (88.2%25 identity in 34 aa overlap)%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0122;product=hypothetical protein Cj0122;protein_id=CAL34293.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	125503	126429	.	-	.	ID=gene-Cj0123c;Name=Cj0123c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0123c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	125503	126429	.	-	0	ID=cds-CAL34294.1;Parent=gene-Cj0123c;Dbxref=EnsemblGenomes-Gn:Cj0123c,EnsemblGenomes-Tr:CAL34294,GOA:Q0PC14,InterPro:IPR001269,InterPro:IPR013785,InterPro:IPR018517,InterPro:IPR024036,UniProtKB/TrEMBL:Q0PC14,NCBI_GP:CAL34294.1;Name=CAL34294.1;Note=Original (2000) note: Cj0123c%2C possible transcriptional regulator%2C len: 308 aa%3B similar to hypothetical proteins e.g. YACF_BACSU (333 aa)%2C fasta scores%3B opt: 566 z-score: 916.8 E(): 0%2C 37.2%25 identity in 312 aa overlap%2C and to e.g. NIR3_RHOCA nitrogen regulation protein nifR3 (324 aa)%2C fasta scores%3B opt: 517 z-score: 616.2 E(): 4.6e-27%2C 34.4%25 identity in 317 aa overlap. 49.5%25 identity to HP0727. Contains Pfam match to entry PF01207 UPF0034%2C Uncharacterized protein family UPF0034%2Cscore 260.90%2C E-value 1.7e-74%3B~Updated (2006) note: Pfam domain PF01207 Dihydrouridine synthase (Dus) identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity scores carried out yet. Thus%2C putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF01207;locus_tag=Cj0123c;product=putative tRNA-dihydrouridine synthase;protein_id=CAL34294.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	125515	126402	.	-	.	ID=id-Cj0123c;Note=HMMPfam hit to PF01207%2C Dihydrouridine synthase (Dus)%2C score 3.1e-75;gbkey=misc_feature;inference=protein motif:Pfam:PF01207;locus_tag=Cj0123c
gi|15791399|ref|NC_002163.1|	EMBL	gene	126426	127412	.	-	.	ID=gene-Cj0124c;Name=Cj0124c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0124c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	126426	127412	.	-	0	ID=cds-CAL34295.1;Parent=gene-Cj0124c;Dbxref=EnsemblGenomes-Gn:Cj0124c,EnsemblGenomes-Tr:CAL34295,UniProtKB/TrEMBL:Q0PC13,NCBI_GP:CAL34295.1;Name=CAL34295.1;Note=Original (2000) note: Cj0124c%2C probable membrane protein%2C len: 328 aa%3B 21.1%25 identity to HP0948. Contains two possible transmembrane domains. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj0124c;product=putative membrane protein;protein_id=CAL34295.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	127221	127289	.	-	.	ID=id-Cj0124c;Note=2 probable transmembrane helices predicted for Cj0124c by TMHMM2.0 at aa 5-27 and 42-64;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0124c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	127332	127400	.	-	.	ID=id-Cj0124c;Note=2 probable transmembrane helices predicted for Cj0124c by TMHMM2.0 at aa 5-27 and 42-64;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0124c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	127402	127764	.	-	.	ID=gene-Cj0125c;Name=Cj0125c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0125c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	127402	127764	.	-	0	ID=cds-CAL34296.1;Parent=gene-Cj0125c;Dbxref=EnsemblGenomes-Gn:Cj0125c,EnsemblGenomes-Tr:CAL34296,GOA:Q0PC12,InterPro:IPR000962,InterPro:IPR020458,UniProtKB/TrEMBL:Q0PC12,NCBI_GP:CAL34296.1;Name=CAL34296.1;Note=Original (2000) note: Cj0125c%2C unknown%2C len: 120 aa%3B some similarity to e.g. DKSA_ECOLI dnaK suppressor protein (151 aa)%2C fasta scores%3B opt: 186 z-score: 276.6 E(): 3.8e-08%2C 26.3%25 identity in 118 aa overlap. No Hp match. Contains PS01102 Prokaryotic dksA/traR C4-type zinc finger and Pfam match to entry PF01258 zf_dskA_traR%2CProkaryotic dksA/traR C4-type zinc finger%2C score 39.20%2CE-value 9.7e-08%3B~Updated (2006) note: No specific characterisation has been carried out yet. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS01102;locus_tag=Cj0125c;product=hypothetical protein Cj0125c;protein_id=CAL34296.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	127417	127617	.	-	.	ID=id-Cj0125c;Note=HMMPfam hit to PF01258%2C Prokaryotic dksA/traR C4-type zinc finge%2C score 6.8e-09;gbkey=misc_feature;inference=protein motif:Pfam:PF01258;locus_tag=Cj0125c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	127441	127515	.	-	.	ID=id-Cj0125c-2;Note=PS01102 Prokaryotic dksA/traR C4-type zinc finger;gbkey=misc_feature;inference=protein motif:Prosite:PS01102;locus_tag=Cj0125c
gi|15791399|ref|NC_002163.1|	EMBL	gene	127776	128237	.	-	.	ID=gene-Cj0126c;Name=Cj0126c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0126c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	127776	128237	.	-	0	ID=cds-CAL34297.1;Parent=gene-Cj0126c;Dbxref=EnsemblGenomes-Gn:Cj0126c,EnsemblGenomes-Tr:CAL34297,GOA:Q9PJ01,InterPro:IPR003742,InterPro:IPR029026,InterPro:IPR029028,NCBI_GP:CAL34297.1;Name=CAL34297.1;Note=Original (2000) note: Cj0126c%2C unknown%2C len: 153 aa%3B similar to hypotheticals e.g. YBEA_ECOLI (155 aa)%2Cfasta scores%3B opt: 189 z-score: 288.6 E(): 8.1e-09%2C 28.1%25 identity in 153 aa overlap. 37.2%25 identity to HP0949%3B~Updated (2006) note: Pfam PF02590 Uncharacterized ACR family was present within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02590;locus_tag=Cj0126c;product=conserved hypothetical protein Cj0126c;protein_id=CAL34297.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	127782	128225	.	-	.	ID=id-Cj0126c;Note=HMMPfam hit to PF02590%2C Uncharacterized ACR%2CCOG1576%2C score 9.2e-69;gbkey=misc_feature;inference=protein motif:Pfam:PF02590;locus_tag=Cj0126c
gi|15791399|ref|NC_002163.1|	EMBL	gene	128227	129069	.	-	.	ID=gene-Cj0127c;Name=accD;gbkey=Gene;gene=accD;gene_biotype=protein_coding;locus_tag=Cj0127c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	128227	129069	.	-	0	ID=cds-CAL34298.1;Parent=gene-Cj0127c;Dbxref=EnsemblGenomes-Gn:Cj0127c,EnsemblGenomes-Tr:CAL34298,GOA:Q0PC10,InterPro:IPR000022,InterPro:IPR000438,InterPro:IPR011762,InterPro:IPR029045,UniProtKB/TrEMBL:Q0PC10,NCBI_GP:CAL34298.1;Name=CAL34298.1;Note=Original (2000) note: Cj0127c%2C accD%2C probable acetyl-coenzyme A carboxylase carboxyl transferase subunit beta %2C len: 280 aa%3B similar to many e.g. ACCD_ECOLI acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (304 aa)%2C fasta scores%3B opt: 903 z-score: 1278.3 E(): 0%2C 53.4%25 identity in 251 aa overlap. 65.5%25 identity to HP0950%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Fatty acid biosynthesis%3B~PMID:7678242%2C PMID:1355086;gbkey=CDS;gene=accD;locus_tag=Cj0127c;product=acetyl-coenzyme A carboxylase carboxyl transferase subunit beta;protein_id=CAL34298.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	128974	128991	.	-	.	ID=id-Cj0127c;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=accD;inference=protein motif:Prosite:PS00190;locus_tag=Cj0127c
gi|15791399|ref|NC_002163.1|	EMBL	gene	129078	129800	.	-	.	ID=gene-Cj0128c;Name=Cj0128c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0128c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	129078	129800	.	-	0	ID=cds-CAL34299.1;Parent=gene-Cj0128c;Dbxref=EnsemblGenomes-Gn:Cj0128c,EnsemblGenomes-Tr:CAL34299,GOA:Q0PC09,InterPro:IPR000760,UniProtKB/TrEMBL:Q0PC09,NCBI_GP:CAL34299.1;Name=CAL34299.1;Note=Original (2000) note: Cj0128c%2C unknown%2C len: 240 aa%3B some similarity to e.g. SUHB_ECOLI extragenic suppressor protein suhB (267 aa)%2C fasta scores%3B opt: 168 z-score: 229.0 E(): 1.7e-05%2C 29.9%25 identity in 134 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00459 Inositol monophosphatase family identified within CDS. Product modified to more specific family member due to motif match. Characterised within Escherichia coli%2C however%2Cidentity scores were not acceptable. Functional classification - Misc%3B~PMID:10747806%2C PMID:8002619;gbkey=CDS;inference=protein motif:Pfam:PF00459;locus_tag=Cj0128c;product=putative inositol monophosphatase family protein;protein_id=CAL34299.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	129096	129800	.	-	.	ID=id-Cj0128c;Note=HMMPfam hit to PF00459%2C Inositol monophosphatase family%2C score 1.2e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF00459;locus_tag=Cj0128c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	129219	129287	.	-	.	ID=id-Cj0128c-2;Note=1 probable transmembrane helix predicted for Cj0128c by TMHMM2.0 at aa 172-194;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0128c
gi|15791399|ref|NC_002163.1|	EMBL	gene	129800	132019	.	-	.	ID=gene-Cj0129c;Name=Cj0129c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0129c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	129800	132019	.	-	0	ID=cds-CAL34300.1;Parent=gene-Cj0129c;Dbxref=EnsemblGenomes-Gn:Cj0129c,EnsemblGenomes-Tr:CAL34300,GOA:Q0PC08,InterPro:IPR000184,InterPro:IPR010827,InterPro:IPR023707,UniProtKB/TrEMBL:Q0PC08,NCBI_GP:CAL34300.1;Name=CAL34300.1;Note=Original (2000) note: Cj0129c%2C probable outer membrane protein%2C len: 739 aa%3B similar to e.g. TR:O30912 (EMBL:AF021245) Neisseria meningitidis outer membrane protein omp85 (797 aa)%2C fasta scores%3B opt: 643 z-score: 886.3 E(): 0%2C 25.3%25 identity in 782 aa overlap%2C and D152_HAEIN protective surface antigen d15 precursor (795 aa)%2C fasta scores%3B opt: 523 z-score: 548.2 E(): 2.8e-23%2C24.3%25 identity in 807 aa overlap. 34.2%25 identity to HP0655. Contains N-terminbal signal sequence and Pfam match to entry PF01103 Bac_suface_Ag%2C Bacterial surface antigen%2C score 404.10%2C E-value 1.3e-117%3B~Updated (2006) note: Pfam domains PF01103 Surface antigen and x5 PF07244 Surface antigen variable number repeat were identified within CDS. Further support given to product function. Literature search identified papers giving further clues to product function. Characterisation has been carried out within Escherichia coli%2C however%2Cidentity scores were marginal. Appropriate motifs were present. Putative not added to product function. Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:11422558%2C PMID:16102012;gbkey=CDS;inference=protein motif:Pfam:PF07244;locus_tag=Cj0129c;product=outer membrane protein;protein_id=CAL34300.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	129803	130726	.	-	.	ID=id-Cj0129c;Note=HMMPfam hit to PF01103%2C Surface antigen%2C score 3e-78;gbkey=misc_feature;inference=protein motif:Pfam:PF01103;locus_tag=Cj0129c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	130760	130921	.	-	.	ID=id-Cj0129c-2;Note=HMMPfam hit to PF07244%2C Surface antigen variable number repeat%2C score 5.9e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF07244;locus_tag=Cj0129c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	130991	131164	.	-	.	ID=id-Cj0129c-3;Note=HMMPfam hit to PF07244%2C Surface antigen variable number repeat%2C score 3e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF07244;locus_tag=Cj0129c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	131234	131416	.	-	.	ID=id-Cj0129c-4;Note=HMMPfam hit to PF07244%2C Surface antigen variable number repeat%2C score 1.7e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF07244;locus_tag=Cj0129c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	131519	131692	.	-	.	ID=id-Cj0129c-5;Note=HMMPfam hit to PF07244%2C Surface antigen variable number repeat%2C score 1.3e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF07244;locus_tag=Cj0129c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	131756	131896	.	-	.	ID=id-Cj0129c-6;Note=HMMPfam hit to PF07244%2C Surface antigen variable number repeat%2C score 3.7e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF07244;locus_tag=Cj0129c
gi|15791399|ref|NC_002163.1|	EMBL	gene	132096	132923	.	+	.	ID=gene-Cj0130;Name=tyrA;gbkey=Gene;gene=tyrA;gene_biotype=protein_coding;locus_tag=Cj0130
gi|15791399|ref|NC_002163.1|	EMBL	CDS	132096	132923	.	+	0	ID=cds-CAL34301.1;Parent=gene-Cj0130;Dbxref=EnsemblGenomes-Gn:Cj0130,EnsemblGenomes-Tr:CAL34301,GOA:Q0PC07,InterPro:IPR003099,InterPro:IPR008927,InterPro:IPR016040,UniProtKB/TrEMBL:Q0PC07,NCBI_GP:CAL34301.1;Name=CAL34301.1;Note=Original (2000) note: Cj0130%2C tyrA%2C probable prephenate dehydrogenase%2C len: 275 aa%3B similar to e.g. TYRA_BACSU prephenate dehydrogenase (EC 1.3.1.12) (372 aa)%2C fasta scores%3B opt: 474 z-score: 529.7 E(): 3e-22%2C31.0%25 identity in 284 aa overlap. 45.3%25 identity to HP1380%3B~Updated (2006) note: Characterised within Bacillus subtilis with marginal identity score. Alignment does not cover full sequence length. Putative kept within product function. Functional classification - Amino acid biosynthesis - Aromatic amino acid family%3B~PMID:3106153;gbkey=CDS;gene=tyrA;locus_tag=Cj0130;product=putative prephenate dehydrogenase;protein_id=CAL34301.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	132108	132911	.	+	.	ID=id-Cj0130;Note=HMMPfam hit to PF02153%2C Prephenate dehydrogenase%2Cscore 1.2e-83;gbkey=misc_feature;gene=tyrA;inference=protein motif:Pfam:PF02153;locus_tag=Cj0130
gi|15791399|ref|NC_002163.1|	EMBL	gene	133003	134376	.	+	.	ID=gene-Cj0131;Name=Cj0131;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0131
gi|15791399|ref|NC_002163.1|	EMBL	CDS	133003	134376	.	+	0	ID=cds-CAL34302.1;Parent=gene-Cj0131;Dbxref=EnsemblGenomes-Gn:Cj0131,EnsemblGenomes-Tr:CAL34302,InterPro:IPR011055,InterPro:IPR016047,UniProtKB/TrEMBL:Q0PC06,NCBI_GP:CAL34302.1;Name=CAL34302.1;Note=Original (2000) note: Cj0131%2C probable periplasmic protein%2C len: 457 aa%3B similar to hypothetical proteins e.g.TR:O25694 (EMBL:AE000754) Aquifex aeolicus AQ_1743 (422 aa)%2C fasta scores%3B opt: 401 z-score: 635.2 E(): 4e-28%2C 30.0%25 identity in 420 aa overlap. 30.0%25 identity to HP1054. Contains probable N-terminal signal sequence. Also similar in C-terminus to Cj1235 (30.2%25 identity in 222 aa overlap)%3B~Updated (2006) note: Pfam domain PF01551 Peptidase family M23 identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity scores identified yet. Thus%2C putative kept within product function. Functional classification - Degradation of macromolecules - Proteins%2C peptides and glycopeptides;gbkey=CDS;inference=protein motif:Pfam:PF01551;locus_tag=Cj0131;product=putative peptidase M23 family protein;protein_id=CAL34302.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	133027	133095	.	+	.	ID=id-Cj0131;Note=1 probable transmembrane helix predicted for Cj0131 by TMHMM2.0 at aa 9-31;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0131
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	134002	134289	.	+	.	ID=id-Cj0131-2;Note=HMMPfam hit to PF01551%2C Peptidase family M23%2C score 5.2e-27;gbkey=misc_feature;inference=protein motif:Pfam:PF01551;locus_tag=Cj0131
gi|15791399|ref|NC_002163.1|	EMBL	gene	134376	135260	.	+	.	ID=gene-Cj0132;Name=lpxC;gbkey=Gene;gene=lpxC;gene_biotype=protein_coding;locus_tag=Cj0132
gi|15791399|ref|NC_002163.1|	EMBL	CDS	134376	135260	.	+	0	ID=cds-CAL34303.1;Parent=gene-Cj0132;Dbxref=EnsemblGenomes-Gn:Cj0132,EnsemblGenomes-Tr:CAL34303,GOA:Q9PIZ5,InterPro:IPR004463,InterPro:IPR011334,InterPro:IPR015870,InterPro:IPR020568,NCBI_GP:CAL34303.1;Name=CAL34303.1;Note=Original (2000) note: Cj0132%2C lpxC%2C probable UDP-3-O-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase%2C len: 294 aa%3B simlar to e.g. LPXC_ECOLI UDP-3-O-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase (305 aa)%2C fasta scores%3B opt: 804 z-score: 1267.2 E(): 0%2C 42.5%25 identity in 287 aa overlap. 54.9%25 identity to HP1052%3B~Updated (2006) note: Pfam domain PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity scores. Thus%2C putative not added to product function. Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:8752330;gbkey=CDS;gene=lpxC;inference=protein motif:Pfam:PF03331;locus_tag=Cj0132;product=UDP-3-O-[3-hydroxymyristoyl] n-acetylglucosamine deacetylase;protein_id=CAL34303.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	134376	135197	.	+	.	ID=id-Cj0132;Note=HMMPfam hit to PF03331%2C UDP-3-O-acyl N-acetylglycosamine deacetylase%2C score 5.5e-135;gbkey=misc_feature;gene=lpxC;inference=protein motif:Pfam:PF03331;locus_tag=Cj0132
gi|15791399|ref|NC_002163.1|	EMBL	gene	135299	135700	.	+	.	ID=gene-Cj0133;Name=Cj0133;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0133
gi|15791399|ref|NC_002163.1|	EMBL	CDS	135299	135700	.	+	0	ID=cds-CAL34304.1;Parent=gene-Cj0133;Dbxref=EnsemblGenomes-Gn:Cj0133,EnsemblGenomes-Tr:CAL34304,GOA:Q0PC04,UniProtKB/TrEMBL:Q0PC04,NCBI_GP:CAL34304.1;Name=CAL34304.1;Note=Original (2000) note: Cj0133%2C unknown%2C len: 133 aa%3B 33.6%25 identity to HP1051%3B~Updated (2006) note: Pfam domain PF00814 Glycoprotease family identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification - Degradation of macromolecules - Proteins%2Cpeptides and glycopeptides;gbkey=CDS;inference=protein motif:Pfam:PF00814;locus_tag=Cj0133;product=putative glycoprotease family protein;protein_id=CAL34304.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	135323	135550	.	+	.	ID=id-Cj0133;Note=HMMPfam hit to PF00814%2C Glycoprotease family%2C score 1e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF00814;locus_tag=Cj0133
gi|15791399|ref|NC_002163.1|	EMBL	gene	135709	136587	.	+	.	ID=gene-Cj0134;Name=thrB;gbkey=Gene;gene=thrB;gene_biotype=protein_coding;locus_tag=Cj0134
gi|15791399|ref|NC_002163.1|	EMBL	CDS	135709	136587	.	+	0	ID=cds-CAL34305.1;Parent=gene-Cj0134;Dbxref=EnsemblGenomes-Gn:Cj0134,EnsemblGenomes-Tr:CAL34305,GOA:Q9PIZ3,InterPro:IPR000870,InterPro:IPR006203,InterPro:IPR006204,InterPro:IPR013750,InterPro:IPR014721,InterPro:IPR020568,NCBI_GP:CAL34305.1;Name=CAL34305.1;Note=Original (2000) note: Cj0134%2C thrB%2C probable homoserine kinase%2C len: 292 aa%3B similar to many e.g. KHSE_FREDI homoserine kinase (EC 2.7.1.39) (307 aa)%2C fasta scores%3B opt: 537 z-score: 750.4 E(): 0%2C 31.6%25 identity in 294 aa overlap. 51.6%25 identity to HP1050. Contains PS00627 GHMP kinases putative ATP-binding domain%3B~Updated (2006) note: Pfam domain PF00288 GHMP kinases putative ATP-binding protein identified within CDS. Further support given to product function. Characterised within Fremyella diplosiphon with marginal identity score. Putative kept within product function%3B~Updated (2006) note: PMID:2838727. Functional classification - Amino acid biosynthesis - Aspartate family%3B~PMID:2838727;gbkey=CDS;gene=thrB;inference=protein motif:Prosite:PS00627;locus_tag=Cj0134;product=putative homoserine kinase;protein_id=CAL34305.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	135928	136494	.	+	.	ID=id-Cj0134;Note=HMMPfam hit to PF00288%2C GHMP kinases putative ATP-binding protei%2C score 6e-28;gbkey=misc_feature;gene=thrB;inference=protein motif:Pfam:PF00288;locus_tag=Cj0134
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	135955	135990	.	+	.	ID=id-Cj0134-2;Note=PS00627 GHMP kinases putative ATP-binding domain;gbkey=misc_feature;gene=thrB;inference=protein motif:Prosite:PS00627;locus_tag=Cj0134
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	136279	136311	.	+	.	ID=id-Cj0134-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=thrB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0134
gi|15791399|ref|NC_002163.1|	EMBL	gene	136612	136869	.	+	.	ID=gene-Cj0135;Name=Cj0135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0135
gi|15791399|ref|NC_002163.1|	EMBL	CDS	136612	136869	.	+	0	ID=cds-CAL34306.1;Parent=gene-Cj0135;Dbxref=EnsemblGenomes-Gn:Cj0135,EnsemblGenomes-Tr:CAL34306,InterPro:IPR007393,UniProtKB/TrEMBL:Q0PC02,NCBI_GP:CAL34306.1;Name=CAL34306.1;Note=Original (2000) note: Cj0135%2C unknown%2C len: 85 aa%3B 44.6%25 identity to HP1049%3B~Updated (2006) note: Pfam PF04296 Protein of unknown function (DUF448) was present within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF04296;locus_tag=Cj0135;product=conserved hypothetical protein Cj0135;protein_id=CAL34306.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	136624	136857	.	+	.	ID=id-Cj0135;Note=HMMPfam hit to PF04296%2C Protein of unknown function (DUF448)%2C score 5.8e-31;gbkey=misc_feature;inference=protein motif:Pfam:PF04296;locus_tag=Cj0135
gi|15791399|ref|NC_002163.1|	EMBL	gene	136856	139471	.	+	.	ID=gene-Cj0136;Name=infB;gbkey=Gene;gene=infB;gene_biotype=protein_coding;locus_tag=Cj0136
gi|15791399|ref|NC_002163.1|	EMBL	CDS	136856	139471	.	+	0	ID=cds-CAL34307.1;Parent=gene-Cj0136;Dbxref=EnsemblGenomes-Gn:Cj0136,EnsemblGenomes-Tr:CAL34307,GOA:Q9PIZ1,InterPro:IPR000178,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR006847,InterPro:IPR009000,InterPro:IPR015760,InterPro:IPR023115,InterPro:IPR027417,NCBI_GP:CAL34307.1;Name=CAL34307.1;Note=Original (2000) note: Cj0136%2C infB%2C probable translation initiation factor IF-2%2C len: 871 aa%3B similar to many e.g. IF2_ENTFC translation initiation factor IF-2 (784 aa)%2C fasta scores%3B opt: 1893 z-score: 1909.4 E(): 0%2C40.0%25 identity in 865 aa overlap. 46.3%25 identity to HP1048. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS01176 Initiation factor 2 signature and Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family (contains ATP/GTP binding P-loop)%2C score 136.20%2CE-value 6e-37%3B~Updated (2006) note: Characterised within Escherichia coli and Bacillus subtilis with acceptable identity scores. Thus%2C putative not added to product function. Functional classification - Protein translation and modification%3B~PMID:2110148%2C PMID:3025199;gbkey=CDS;gene=infB;inference=protein motif:Prosite:PS01176;locus_tag=Cj0136;product=translation initiation factor IF-2;protein_id=CAL34307.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	136856	137014	.	+	.	ID=id-Cj0136;Note=HMMPfam hit to PF04760%2C Translation initiation factor IF-2%2C N-ter%2C score 8.4e-15;gbkey=misc_feature;gene=infB;inference=protein motif:Pfam:PF04760;locus_tag=Cj0136
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	137729	137884	.	+	.	ID=id-Cj0136-2;Note=HMMPfam hit to PF04760%2C Translation initiation factor IF-2%2C N-ter%2C score 1.2e-20;gbkey=misc_feature;gene=infB;inference=protein motif:Pfam:PF04760;locus_tag=Cj0136
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	137963	138466	.	+	.	ID=id-Cj0136-3;Note=HMMPfam hit to PF00009%2C Elongation factor Tu GTP binding domain%2C score 2.5e-54;gbkey=misc_feature;gene=infB;inference=protein motif:Pfam:PF00009;locus_tag=Cj0136
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	137972	138301	.	+	.	ID=id-Cj0136-4;Note=HMMPfam hit to PF01926%2C GTPase of unknown function%2Cscore 8.6e-10;gbkey=misc_feature;gene=infB;inference=protein motif:Pfam:PF01926;locus_tag=Cj0136
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	137990	138013	.	+	.	ID=id-Cj0136-5;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=infB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0136
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	138533	138724	.	+	.	ID=id-Cj0136-6;Note=HMMPfam hit to PF03144%2C Elongation factor Tu domain%2C score 1.3e-08;gbkey=misc_feature;gene=infB;inference=protein motif:Pfam:PF03144;locus_tag=Cj0136
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	139229	139435	.	+	.	ID=id-Cj0136-7;Note=HMMPfam hit to PF03144%2C Elongation factor Tu domain%2C score 1.4e-08;gbkey=misc_feature;gene=infB;inference=protein motif:Pfam:PF03144;locus_tag=Cj0136
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	139319	139387	.	+	.	ID=id-Cj0136-8;Note=PS01176 Initiation factor 2 signature;gbkey=misc_feature;gene=infB;inference=protein motif:Prosite:PS01176;locus_tag=Cj0136
gi|15791399|ref|NC_002163.1|	EMBL	gene	139468	139830	.	+	.	ID=gene-Cj0137;Name=rbfA;gbkey=Gene;gene=rbfA;gene_biotype=protein_coding;locus_tag=Cj0137
gi|15791399|ref|NC_002163.1|	EMBL	CDS	139468	139830	.	+	0	ID=cds-CAL34308.1;Parent=gene-Cj0137;Dbxref=EnsemblGenomes-Gn:Cj0137,EnsemblGenomes-Tr:CAL34308,GOA:Q9PIZ0,InterPro:IPR000238,InterPro:IPR015946,InterPro:IPR020053,InterPro:IPR023799,NCBI_GP:CAL34308.1;Name=CAL34308.1;Note=Original (2000) note: Cj0137%2C unknown%2C len: 120 aa%3B weak similarity to RBFA_BACSU P32731 ribosome-binding factor A (P15B PROTEIN) (117 aa)%2C blastp scores%3B E%3D 0.00012%2C 25%25 identity in 106 aa overlap. 41.4%25 identity to HP1047%3B~Updated (2006) note: Prosite PS01319 RBFA%2CRibosome-binding factor A identified within CDS. Product modified to more specific family member based on motif match. Characterised within Bacillus subtilis and Escherichia coli%2C however%2C identity scores not acceptable. Putative kept within product function. Functional classification - Misc%3B~PMID:12628255;gbkey=CDS;gene=rbfA;inference=protein motif:Prosite:PS01319;locus_tag=Cj0137;product=putative ribosome-binding factor A;protein_id=CAL34308.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	139820	140242	.	+	.	ID=gene-Cj0138;Name=Cj0138;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0138
gi|15791399|ref|NC_002163.1|	EMBL	CDS	139820	140242	.	+	0	ID=cds-CAL34309.1;Parent=gene-Cj0138;Dbxref=EnsemblGenomes-Gn:Cj0138,EnsemblGenomes-Tr:CAL34309,GOA:Q9PIY9,InterPro:IPR003728,InterPro:IPR028989,InterPro:IPR028998,NCBI_GP:CAL34309.1;Name=CAL34309.1;Note=Original (2000) note: Cj0138%2C unknown%2C len: 140 aa%3B similar to hypothetical proteins e.g. YHBC_ECOLI (152 aa)%2Cfasta scores%3B opt: 272 z-score: 436.7 E(): 4.5e-17%2C 41.4%25 identity in 116 aa overlap. 38.9%25 identity to HP1046%3B~Updated (2006) note: Pfam PF02576 Uncharacterised BCR%2C YhbC family was present within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02576;locus_tag=Cj0138;product=conserved hypothetical protein Cj0138;protein_id=CAL34309.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	139823	140227	.	+	.	ID=id-Cj0138;Note=HMMPfam hit to PF02576%2C Uncharacterised BCR%2C YhbC family COG0779%2C score 1e-62;gbkey=misc_feature;inference=protein motif:Pfam:PF02576;locus_tag=Cj0138
gi|15791399|ref|NC_002163.1|	EMBL	gene	140289	142640	.	+	.	ID=gene-Cj0139;Name=Cj0139;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0139
gi|15791399|ref|NC_002163.1|	EMBL	CDS	140289	142640	.	+	0	ID=cds-CAL34310.1;Parent=gene-Cj0139;Dbxref=EnsemblGenomes-Gn:Cj0139,EnsemblGenomes-Tr:CAL34310,GOA:Q0PBZ8,InterPro:IPR011704,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PBZ8,NCBI_GP:CAL34310.1;Name=CAL34310.1;Note=Original (2000) note: Cj0139%2C possible endonuclease%2C len: 783 aa%3B similar in part to MCRB_ECOLI 5-methylcytosine-specific restriction enzyme B (465 aa)%2Cfasta scores%3B opt: 305 z-score: 505.4 E(): 6.7e-21%2C 40.9%25 identity in 186 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF07728 ATPase family associated with various cellular activities was identified within CDS. Characterised within Eschereichia coli with acceptable identity scores. Sequence alignment was only partial. Thus%2C putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:7781618;gbkey=CDS;inference=protein motif:Pfam:PF07728;locus_tag=Cj0139;product=putative endonuclease;protein_id=CAL34310.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	141279	141302	.	+	.	ID=id-Cj0139;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0139
gi|15791399|ref|NC_002163.1|	EMBL	gene	142633	143964	.	+	.	ID=gene-Cj0140;Name=Cj0140;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0140
gi|15791399|ref|NC_002163.1|	EMBL	CDS	142633	143964	.	+	0	ID=cds-CAL34311.1;Parent=gene-Cj0140;Dbxref=EnsemblGenomes-Gn:Cj0140,EnsemblGenomes-Tr:CAL34311,InterPro:IPR019292,UniProtKB/TrEMBL:Q0PBZ7,NCBI_GP:CAL34311.1;Name=CAL34311.1;Note=Original (2000) note: Cj0140%2C unknown%2C len: 443 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0140;product=hypothetical protein Cj0140;protein_id=CAL34311.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	143953	144756	.	-	.	ID=gene-Cj0141c;Name=Cj0141c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0141c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	143953	144756	.	-	0	ID=cds-CAL34312.1;Parent=gene-Cj0141c;Dbxref=EnsemblGenomes-Gn:Cj0141c,EnsemblGenomes-Tr:CAL34312,GOA:Q0PBZ6,InterPro:IPR001626,InterPro:IPR029022,UniProtKB/TrEMBL:Q0PBZ6,NCBI_GP:CAL34312.1;Name=CAL34312.1;Note=Original (2000) note: Cj0141c%2C ABC transporter integral membrane protein%2C len: 267 aa%3B similar to many e.g. MNTB_SYNY3 manganese transport system membrane protein (306 aa)%2C fasta scores%3B opt: 425 z-score: 449.6 E(): 8.7e-18%2C 25.8%25 identity in 264 aa overlap. No Hp match. Contains Pfam match to entry PF00950 ABC-3%2C ABC 3 transport family%2C score 276.20%2C E-value 4.3e-79%3B~Updated (2006) note: Seven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score identified. Thus%2C putative added to product function. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0141c;product=putative ABC transporter integral membrane protein;protein_id=CAL34312.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	143974	144042	.	-	.	ID=id-Cj0141c;Note=7 probable transmembrane helices predicted for Cj0141c by TMHMM2.0 at aa 13-35%2C 55-77%2C 90-112%2C 132-150%2C171-200%2C 215-237 and 239-261;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0141c;part=1/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	144046	144114	.	-	.	ID=id-Cj0141c;Note=7 probable transmembrane helices predicted for Cj0141c by TMHMM2.0 at aa 13-35%2C 55-77%2C 90-112%2C 132-150%2C171-200%2C 215-237 and 239-261;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0141c;part=2/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	144157	144246	.	-	.	ID=id-Cj0141c;Note=7 probable transmembrane helices predicted for Cj0141c by TMHMM2.0 at aa 13-35%2C 55-77%2C 90-112%2C 132-150%2C171-200%2C 215-237 and 239-261;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0141c;part=3/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	144307	144363	.	-	.	ID=id-Cj0141c;Note=7 probable transmembrane helices predicted for Cj0141c by TMHMM2.0 at aa 13-35%2C 55-77%2C 90-112%2C 132-150%2C171-200%2C 215-237 and 239-261;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0141c;part=4/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	144421	144489	.	-	.	ID=id-Cj0141c;Note=7 probable transmembrane helices predicted for Cj0141c by TMHMM2.0 at aa 13-35%2C 55-77%2C 90-112%2C 132-150%2C171-200%2C 215-237 and 239-261;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0141c;part=5/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	144526	144594	.	-	.	ID=id-Cj0141c;Note=7 probable transmembrane helices predicted for Cj0141c by TMHMM2.0 at aa 13-35%2C 55-77%2C 90-112%2C 132-150%2C171-200%2C 215-237 and 239-261;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0141c;part=6/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	144652	144720	.	-	.	ID=id-Cj0141c;Note=7 probable transmembrane helices predicted for Cj0141c by TMHMM2.0 at aa 13-35%2C 55-77%2C 90-112%2C 132-150%2C171-200%2C 215-237 and 239-261;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0141c;part=7/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	143968	144741	.	-	.	ID=id-Cj0141c-2;Note=HMMPfam hit to PF00950%2C ABC 3 transport family%2Cscore 7.6e-82;gbkey=misc_feature;inference=protein motif:Pfam:PF00950;locus_tag=Cj0141c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	144016	144048	.	-	.	ID=id-Cj0141c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0141c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	144685	144717	.	-	.	ID=id-Cj0141c-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0141c
gi|15791399|ref|NC_002163.1|	EMBL	gene	144749	145603	.	-	.	ID=gene-Cj0142c;Name=Cj0142c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0142c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	144749	145603	.	-	0	ID=cds-CAL34313.1;Parent=gene-Cj0142c;Dbxref=EnsemblGenomes-Gn:Cj0142c,EnsemblGenomes-Tr:CAL34313,GOA:Q0PBZ5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PBZ5,NCBI_GP:CAL34313.1;Name=CAL34313.1;Note=Original (2000) note: Cj0142c%2C ABC transporter ATP-binding protein%2C len: 284 aa%3B simlar to many e.g. MNTA_SYNY3 manganese transport system ATP-binding protein (260 aa)%2C fasta scores%3B opt: 417 z-score: 613.7 E(): 6.2e-27%2C 32.9%25 identity in 252 aa overlap. No Hp ortholog but 30.4%25 identity to HP0250 oligopeptide ABC transporter. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2CPS00211 ABC transporters family signature and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%2C score 165.90%2CE-value 6.9e-46%3B~Updated (2006) note: Some characterisation within Bacillus subtilis with acceptable identity score. Sequence alignment was only partial. Thus%2C putative added to product function. Functional classification -Transport/binding proteins - Other%3B~PMID:10760146;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj0142c;product=putative ABC transporter ATP-binding protein;protein_id=CAL34313.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	144986	145519	.	-	.	ID=id-Cj0142c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 7.4e-49;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj0142c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	145169	145213	.	-	.	ID=id-Cj0142c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj0142c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	145475	145498	.	-	.	ID=id-Cj0142c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0142c
gi|15791399|ref|NC_002163.1|	EMBL	gene	145616	146506	.	-	.	ID=gene-Cj0143c;Name=Cj0143c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0143c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	145616	146506	.	-	0	ID=cds-CAL34314.1;Parent=gene-Cj0143c;Dbxref=EnsemblGenomes-Gn:Cj0143c,EnsemblGenomes-Tr:CAL34314,GOA:Q0PBZ4,InterPro:IPR006127,UniProtKB/TrEMBL:Q0PBZ4,NCBI_GP:CAL34314.1;Name=CAL34314.1;Note=Original (2000) note: Cj0143c%2C probable periplasmic solute binding protein for ABC transport system%2C len: 296 aa%3B similar to e.g. ZNUA_ECOLI high-affinity zinc uptake system protein znuA (328 aa)%2C fasta scores%3B opt: 386 z-score: 471.6 E(): 5.2e-19%2C 26.4%25 identity in 288 aa overlap. No Hp match. Contains probable N-terminal signal sequence and Pfam match to entry PF01297 Lipoprotein_4%2Cscore 133.20%2C E-value 4.6e-36%3B~Updated (2006) note: Pfam domain PPF01297 Periplasmic solute binding protein identified within CDS. Further support given to product function. Some characterisation within Eschericia coli%2C however%2C identity score was marginal. Thus%2C putative kept within product function. Paper identified linking protein to glycoprotein (PMID:12186869). Also%2C found to have adhesin family signature. Functional classification - Transport/binding proteins - Other%3B~PMID:9680209%2C PMID:12186869;gbkey=CDS;inference=protein motif:Pfam:PF01297;locus_tag=Cj0143c;product=putative periplasmic solute binding protein for ABC transport system;protein_id=CAL34314.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	145628	146494	.	-	.	ID=id-Cj0143c;Note=HMMPfam hit to PF01297%2C Periplasmic solute binding protein family%2C score 6.1e-62;gbkey=misc_feature;inference=protein motif:Pfam:PF01297;locus_tag=Cj0143c
gi|15791399|ref|NC_002163.1|	EMBL	gene	146705	148684	.	+	.	ID=gene-Cj0144;Name=Cj0144;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0144
gi|15791399|ref|NC_002163.1|	EMBL	CDS	146705	148684	.	+	0	ID=cds-CAL34315.1;Parent=gene-Cj0144;Dbxref=EnsemblGenomes-Gn:Cj0144,EnsemblGenomes-Tr:CAL34315,GOA:Q0PBZ3,InterPro:IPR004010,InterPro:IPR004089,InterPro:IPR029151,UniProtKB/TrEMBL:Q0PBZ3,NCBI_GP:CAL34315.1;Name=CAL34315.1;Note=Original (2000) note: Cj0144%2C probable methyl-accepting chemotaxis signal transduction protein%2Clen: 659 aa%3B similar to mnay e.g. MCPS_ENTAE methyl-accepting chemotaxis serine transducer (557 aa)%2Cfasta scores%3B opt: 297 z-score: 493.4 E(): 3.2e-20%2C 28.6%25 identity in 377 aa overlap. No Hp ortholog. C-terminus contains repeat1%2C and is identical to the other repeat 1-containing genes Cj0262c and Cj1564. Contains N-terminal signal sequence and transmembrane anchor around aa 300. Also contains Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2C score 110.60%2C E-value 4.1e-30%3B~Updated (2006) note: Some characterisation work within Bacillus subtilis and Escherichia coli%2C however%2Cidentity scores were unnacceptable. Thus%2C putative kept within product function. Functional classification -Chemotaxis and mobility%3B~PMID:6213619%2C PMID:7921238;gbkey=CDS;inference=protein motif:Pfam:PF00015;locus_tag=Cj0144;product=putative methyl-accepting chemotaxis signal transduction protein;protein_id=CAL34315.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	146732	146800	.	+	.	ID=id-Cj0144;Note=2 probable transmembrane helices predicted for Cj0144 by TMHMM2.0 at aa 10-32 and 287-309;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0144;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	147563	147631	.	+	.	ID=id-Cj0144;Note=2 probable transmembrane helices predicted for Cj0144 by TMHMM2.0 at aa 10-32 and 287-309;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0144;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	148184	148678	.	+	.	ID=id-Cj0144-2;Note=HMMPfam hit to PF00015%2C Methyl-accepting chemotaxis protein (MCP) s%2C score 6.4e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF00015;locus_tag=Cj0144
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	147606	148684	.	+	.	ID=id-Cj0144-3;Note=repeat 1: identical to complement(238817..239964) and 1492913..1493990 (approximate numbers);gbkey=repeat_region;locus_tag=Cj0144
gi|15791399|ref|NC_002163.1|	EMBL	gene	148819	150600	.	+	.	ID=gene-Cj0145;Name=Cj0145;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0145
gi|15791399|ref|NC_002163.1|	EMBL	CDS	148819	150600	.	+	0	ID=cds-CAL34316.1;Parent=gene-Cj0145;Dbxref=EnsemblGenomes-Gn:Cj0145,EnsemblGenomes-Tr:CAL34316,InterPro:IPR008557,InterPro:IPR011042,UniProtKB/TrEMBL:Q0PBZ2,NCBI_GP:CAL34316.1;Name=CAL34316.1;Note=Original (2000) note: Cj0145%2C unknown%2C len: 593 aa%3B some similarity to a hypothetical protein from Streptomyces coelicolor TR:O69840 (EMBL:AL023517) SC1B5.12C (465 aa)%2C fasta scores%3B opt: 124 z-score: 327.1 E(): 5.8e-11%2C 23.0%25 identity in 574 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF05787 Bacterial protein of unknown function (DUF83)%2C identified within CDS. TIGRFAM TIGR01409 TAT_signal_seq%2C Tat (twin-arginine translocation) pathway signal sequence identified within CDS. Product modified to more specific family member based on motif search results. No specific characterisation with acceptable identity scores carried out yet. Thus%2C putative kept within product function. Functional classification -Misc%3B~PMID:10766774;gbkey=CDS;inference=protein motif:Pfam:PF05787;locus_tag=Cj0145;product=putative TAT (Twin-Arginine Translocation) pathway signal sequence domain protein;protein_id=CAL34316.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	148819	150504	.	+	.	ID=id-Cj0145;Note=HMMPfam hit to PF05787%2C Bacterial protein of unknown function (DUF83%2C score 0;gbkey=misc_feature;inference=protein motif:Pfam:PF05787;locus_tag=Cj0145
gi|15791399|ref|NC_002163.1|	EMBL	gene	150638	151576	.	-	.	ID=gene-Cj0146c;Name=trxB;gbkey=Gene;gene=trxB;gene_biotype=protein_coding;locus_tag=Cj0146c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	150638	151576	.	-	0	ID=cds-CAL34317.1;Parent=gene-Cj0146c;Dbxref=EnsemblGenomes-Gn:Cj0146c,EnsemblGenomes-Tr:CAL34317,GOA:Q0PBZ1,InterPro:IPR000103,InterPro:IPR001327,InterPro:IPR005982,InterPro:IPR008255,InterPro:IPR013027,InterPro:IPR023753,PDB:3R9U,UniProtKB/TrEMBL:Q0PBZ1,NCBI_GP:CAL34317.1;Name=CAL34317.1;Note=Original (2000) note: Cj0146c%2C trxB%2C probable thioredoxin reductase%2C len: 312 aa%3B similar to many e.g. TRXB_LISMO thioredoxin reductase (EC 1.6.4.5) (319 aa)%2Cfasta scores%3B opt: 749 z-score: 926.7 E(): 0%2C 38.0%25 identity in 313 aa overlap. 64.2%25 identity to HP0825. Contains PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site%3B~Updated (2006) note: Pfam domain PF00070 Pyridine nucleotide-disulphide oxidoreductase identified within CDS. Further support given to product function. Characterised within Listeria monocytogenes with acceptable identity scores. Appropriate motifs identified. Thus%2C putative not added to product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Thioredoxin%3B~PMID:2644268%2C PMID:15358361;gbkey=CDS;gene=trxB;inference=protein motif:Prosite:PS00573;locus_tag=Cj0146c;product=thioredoxin reductase;protein_id=CAL34317.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	150716	151570	.	-	.	ID=id-Cj0146c;Note=HMMPfam hit to PF00070%2C Pyridine nucleotide-disulphide oxidoreducta%2C score 6e-58;gbkey=misc_feature;gene=trxB;inference=protein motif:Pfam:PF00070;locus_tag=Cj0146c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	151115	151177	.	-	.	ID=id-Cj0146c-2;Note=PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site;gbkey=misc_feature;gene=trxB;inference=protein motif:Prosite:PS00573;locus_tag=Cj0146c
gi|15791399|ref|NC_002163.1|	EMBL	gene	151710	152024	.	-	.	ID=gene-Cj0147c;Name=trxA;gbkey=Gene;gene=trxA;gene_biotype=protein_coding;locus_tag=Cj0147c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	151710	152024	.	-	0	ID=cds-CAL34318.1;Parent=gene-Cj0147c;Dbxref=EnsemblGenomes-Gn:Cj0147c,EnsemblGenomes-Tr:CAL34318,GOA:Q0PBZ0,InterPro:IPR005746,InterPro:IPR012336,InterPro:IPR013766,InterPro:IPR017937,UniProtKB/TrEMBL:Q0PBZ0,NCBI_GP:CAL34318.1;Name=CAL34318.1;Note=Original (2000) note: Cj0147c%2C trxA%2C thioredoxin%2Clen: 104 aa%3B highly similar to many e.g. THIO_ECOLI thioredoxin 1 (108 aa)%2C fasta scores%3B opt: 344 z-score: 590.5 E(): 1.2e-25%2C 45.7%25 identity in 105 aa overlap. 68.6%25 identity to HP0824. Contains PS00194 Thioredoxin family active site and Pfam match to entry PF00085 thiored%2C Thioredoxins%2C score 144.20%2C E-value 3.6e-42%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Appropiate motifs present. Paper identified linking protein to glycoprotein. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Thioredoxin%3B~PMID:12186869%2C PMID:15358361;gbkey=CDS;gene=trxA;inference=protein motif:Prosite:PS00194;locus_tag=Cj0147c;product=thioredoxin;protein_id=CAL34318.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	151713	152018	.	-	.	ID=id-Cj0147c;Note=HMMPfam hit to PF00085%2C Thioredoxin%2C score 6.9e-39;gbkey=misc_feature;gene=trxA;inference=protein motif:Pfam:PF00085;locus_tag=Cj0147c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	151908	151964	.	-	.	ID=id-Cj0147c-2;Note=PS00194 Thioredoxin family active site;gbkey=misc_feature;gene=trxA;inference=protein motif:Prosite:PS00194;locus_tag=Cj0147c
gi|15791399|ref|NC_002163.1|	EMBL	gene	152081	152419	.	-	.	ID=gene-Cj0148c;Name=Cj0148c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0148c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	152081	152419	.	-	0	ID=cds-CAL34319.1;Parent=gene-Cj0148c;Dbxref=EnsemblGenomes-Gn:Cj0148c,EnsemblGenomes-Tr:CAL34319,GOA:Q9PIX9,InterPro:IPR003509,InterPro:IPR011335,InterPro:IPR011856,NCBI_GP:CAL34319.1;Name=CAL34319.1;Note=Original (2000) note: Cj0148c%2C unknown%2C len: 112 aa%3B similar to hypothetical proteins e.g. TR:G3323225 (EMBL:AE001259) Treponema pallidum TP0913 (126 aa)%2C fasta scores%3B opt: 156 z-score: 253.1 E(): 7.6e-07%2C 31.0%25 identity in 100 aa overlap. 47.1%25 identity to HP0823%3B~Updated (2006) note: Pfam PF02021 Uncharacterised protein family was present within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02021;locus_tag=Cj0148c;product=conserved hypothetical protein Cj0148c;protein_id=CAL34319.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	152120	152389	.	-	.	ID=id-Cj0148c;Note=HMMPfam hit to PF02021%2C Uncharacterised protein family UPF0102%2C score 6e-16;gbkey=misc_feature;inference=protein motif:Pfam:PF02021;locus_tag=Cj0148c
gi|15791399|ref|NC_002163.1|	EMBL	gene	152419	153666	.	-	.	ID=gene-Cj0149c;Name=hom;gbkey=Gene;gene=hom;gene_biotype=protein_coding;locus_tag=Cj0149c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	152419	153666	.	-	0	ID=cds-CAL34320.1;Parent=gene-Cj0149c;Dbxref=EnsemblGenomes-Gn:Cj0149c,EnsemblGenomes-Tr:CAL34320,GOA:Q0PBY8,InterPro:IPR001342,InterPro:IPR002912,InterPro:IPR005106,InterPro:IPR016040,InterPro:IPR016204,InterPro:IPR019811,UniProtKB/TrEMBL:Q0PBY8,NCBI_GP:CAL34320.1;Name=CAL34320.1;Note=Original (2000) note: Cj0149c%2C hom%2C probable homoserine dehydrogenase%2C len: 415 aa%3B similar to many e.g. DHOM_BACSU homoserine dehydrogenase (EC 1.1.1.3) (433 aa)%2C fasta scores%3B opt: 932 z-score: 1191.7 E(): 0%2C 36.4%25 identity in 426 aa overlap. 53.3%25 identity to HP0822. Contains PS01042 Homoserine dehydrogenase signature and Pfam match to entry PF00742 Homoserine_dh%2C Homoserine dehydrogenase%2C score 329.20%2C E-value 4.7e-95%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Aspartate family%3B~PMID:3139660;gbkey=CDS;gene=hom;inference=protein motif:Prosite:PS01042;locus_tag=Cj0149c;product=homoserine dehydrogenase;protein_id=CAL34320.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	152437	152661	.	-	.	ID=id-Cj0149c;Note=HMMPfam hit to PF01842%2C ACT domain%2C score 2e-10;gbkey=misc_feature;gene=hom;inference=protein motif:Pfam:PF01842;locus_tag=Cj0149c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	152755	153291	.	-	.	ID=id-Cj0149c-2;Note=HMMPfam hit to PF00742%2C Homoserine dehydrogenase%2Cscore 2.7e-73;gbkey=misc_feature;gene=hom;inference=protein motif:Pfam:PF00742;locus_tag=Cj0149c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	153085	153153	.	-	.	ID=id-Cj0149c-3;Note=PS01042 Homoserine dehydrogenase signature;gbkey=misc_feature;gene=hom;inference=protein motif:Prosite:PS01042;locus_tag=Cj0149c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	153295	153666	.	-	.	ID=id-Cj0149c-4;Note=HMMPfam hit to PF03447%2C Homoserine dehydrogenase%2CNAD binding d%2C score 3.1e-13;gbkey=misc_feature;gene=hom;inference=protein motif:Pfam:PF03447;locus_tag=Cj0149c
gi|15791399|ref|NC_002163.1|	EMBL	gene	153670	154872	.	-	.	ID=gene-Cj0150c;Name=Cj0150c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0150c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	153670	154872	.	-	0	ID=cds-CAL34321.1;Parent=gene-Cj0150c;Dbxref=EnsemblGenomes-Gn:Cj0150c,EnsemblGenomes-Tr:CAL34321,GOA:Q0PBY7,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0PBY7,NCBI_GP:CAL34321.1;Name=CAL34321.1;Note=Original (2000) note: Cj0150c%2C probable aminotransferase%2C len: 400 aa%3B similar to many hypothetical aminotransferases and to e.g. AAT2_BACSU probable aspartate aminotransferase (EC 2.6.1.1) (399 aa)%2Cfasta scores%3B opt: 722 z-score: 1151.8 E(): 0%2C 33.8%25 identity in 390 aa overlap%2C and AAT_BACST aspartate aminotransferase (393 aa)%2C fasta scores%3B opt: 513 z-score: 536.0 E(): 1.3e-22%2C 28.9%25 identity in 377 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00155 aminotran_1%2C Aminotransferases class-I%2C score 129.10%2CE-value 8.1e-35%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Misc%3B~PMID:12022921;gbkey=CDS;inference=protein motif:Pfam:PF00155;locus_tag=Cj0150c;product=aminotransferase;protein_id=CAL34321.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	153679	154629	.	-	.	ID=id-Cj0150c;Note=HMMPfam hit to PF00155%2C Aminotransferase class I and II%2C score 1.3e-29;gbkey=misc_feature;inference=protein motif:Pfam:PF00155;locus_tag=Cj0150c
gi|15791399|ref|NC_002163.1|	EMBL	gene	154884	155690	.	-	.	ID=gene-Cj0151c;Name=Cj0151c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0151c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	154884	155690	.	-	0	ID=cds-CAL34322.1;Parent=gene-Cj0151c;Dbxref=EnsemblGenomes-Gn:Cj0151c,EnsemblGenomes-Tr:CAL34322,UniProtKB/TrEMBL:Q0PBY6,NCBI_GP:CAL34322.1;Name=CAL34322.1;Note=Original (2000) note: Cj0151c%2C possible periplasmic protein%2C len: 268 aa%3B 26.0%25 identity to HP0555. Contains possible N-terminal signal sequence. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0151c;product=putative periplasmic protein;protein_id=CAL34322.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	155684	156622	.	-	.	ID=gene-Cj0152c;Name=Cj0152c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0152c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	155684	156622	.	-	0	ID=cds-CAL34323.1;Parent=gene-Cj0152c;Dbxref=EnsemblGenomes-Gn:Cj0152c,EnsemblGenomes-Tr:CAL34323,UniProtKB/TrEMBL:Q0PBY5,NCBI_GP:CAL34323.1;Name=CAL34323.1;Note=Original (2000) note: Cj0152c%2C possible membrane protein%2C len: 312 aa%3B 25.0%25 identity to HP0554. Contains one probable transmembrane domain around aa 110. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj0152c;product=putative membrane protein;protein_id=CAL34323.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	156275	156343	.	-	.	ID=id-Cj0152c;Note=1 probable transmembrane helix predicted for Cj0152c by TMHMM2.0 at aa 94-116;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0152c
gi|15791399|ref|NC_002163.1|	EMBL	gene	156615	157298	.	-	.	ID=gene-Cj0153c;Name=Cj0153c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0153c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	156615	157298	.	-	0	ID=cds-CAL34324.1;Parent=gene-Cj0153c;Dbxref=EnsemblGenomes-Gn:Cj0153c,EnsemblGenomes-Tr:CAL34324,GOA:Q0PBY4,InterPro:IPR001537,InterPro:IPR004441,InterPro:IPR013123,InterPro:IPR029026,InterPro:IPR029028,InterPro:IPR029064,UniProtKB/TrEMBL:Q0PBY4,NCBI_GP:CAL34324.1;Name=CAL34324.1;Note=Original (2000) note: Cj0153c%2C probable rRNA methylase%2C len: 227 aa%3B similar to members of the spoU family e.g. NHS_STRAS 23S rRNA methyltransferase (274 aa)%2C fasta scores%3B opt: 197 z-score: 247.9 E(): 1.5e-06%2C29.9%25 identity in 157 aa overlap. 42.7%25 identity to HP0553. Contains Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family%2C score 106.90%2CE-value 3.8e-28%3B~Updated (2006) note: Characterised within Escherichia coli with marginal identity score. Putative kept within product function. Functional classification -RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:11698387;gbkey=CDS;inference=protein motif:Pfam:PF00588;locus_tag=Cj0153c;product=putative rRNA methylase;protein_id=CAL34324.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	156633	157052	.	-	.	ID=id-Cj0153c;Note=HMMPfam hit to PF00588%2C SpoU rRNA Methylase family%2Cscore 7e-28;gbkey=misc_feature;inference=protein motif:Pfam:PF00588;locus_tag=Cj0153c
gi|15791399|ref|NC_002163.1|	EMBL	gene	157312	158136	.	-	.	ID=gene-Cj0154c;Name=Cj0154c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0154c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	157312	158136	.	-	0	ID=cds-CAL34325.1;Parent=gene-Cj0154c;Dbxref=EnsemblGenomes-Gn:Cj0154c,EnsemblGenomes-Tr:CAL34325,GOA:Q0PBY3,InterPro:IPR000878,InterPro:IPR008189,InterPro:IPR014776,InterPro:IPR014777,InterPro:IPR018063,UniProtKB/TrEMBL:Q0PBY3,NCBI_GP:CAL34325.1;Name=CAL34325.1;Note=Original (2000) note: Cj0154c%2C possible methylase%2Clen: 274 aa%3B similar to hypotehtical proteins e.g. YABC_BACSU (292 aa)%2C fasta scores%3B opt: 453 z-score: 741.0 E(): 0%2C 32.9%25 identity in 289 aa overlap. 42.3%25 identity to HP0552. Contains PS01296 Uncharacterized protein family UPF0011 signature and Pfam match to entry PF00590 TP_methylase%2C Tetrapyrrole (Corrin/Porphyrin) Methylases.%2Cscore 81.20%2C E-value 2.2e-20%3B~Updated (2006) note: Pfam domain PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylase was identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity score has yet been carried out. Thus%2C putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS01296;locus_tag=Cj0154c;product=putative tetrapyrrole methylase family protein;protein_id=CAL34325.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	157516	158136	.	-	.	ID=id-Cj0154c;Note=HMMPfam hit to PF00590%2C Tetrapyrrole (Corrin/Porphyrin) Methylas%2C score 9.6e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF00590;locus_tag=Cj0154c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	157849	157884	.	-	.	ID=id-Cj0154c-2;Note=PS01296 Uncharacterized protein family UPF0011 signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01296;locus_tag=Cj0154c
gi|15791399|ref|NC_002163.1|	EMBL	gene	158139	158339	.	-	.	ID=gene-Cj0155c;Name=rpmE;gbkey=Gene;gene=rpmE;gene_biotype=protein_coding;locus_tag=Cj0155c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	158139	158339	.	-	0	ID=cds-CAL34326.1;Parent=gene-Cj0155c;Dbxref=EnsemblGenomes-Gn:Cj0155c,EnsemblGenomes-Tr:CAL34326,GOA:Q9PIX2,InterPro:IPR002150,InterPro:IPR027491,NCBI_GP:CAL34326.1;Name=CAL34326.1;Note=Original (2000) note: Cj0155c%2C rpmE%2C probable 50S ribosomal protein L31%2C len: 66 aa%3B highly similar to many e.g. RL31_BACSU 50S ribosomal protein L31 (66 aa)%2C fasta scores%3B opt: 271 z-score: 544.9 E(): 4.3e-23%2C 54.5%25 identity in 66 aa overlap. 58.2%25 identity to HP0551. Contains PS01143 Ribosomal protein L31 signature and Pfam match to entry PF01197 Ribosomal_L31%2C Ribosomal protein L31%2C score 142.80%2C E-value 6.1e-39%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity scores. Thus%2C putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:7026537%2C PMID:15049826;gbkey=CDS;gene=rpmE;inference=protein motif:Prosite:PS01143;locus_tag=Cj0155c;product=50S ribosomal protein L31;protein_id=CAL34326.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	158142	158339	.	-	.	ID=id-Cj0155c;Note=HMMPfam hit to PF01197%2C Ribosomal protein L31%2Cscore 4.2e-40;gbkey=misc_feature;gene=rpmE;inference=protein motif:Pfam:PF01197;locus_tag=Cj0155c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	158166	158222	.	-	.	ID=id-Cj0155c-2;Note=PS01143 Ribosomal protein L31 signature;gbkey=misc_feature;gene=rpmE;inference=protein motif:Prosite:PS01143;locus_tag=Cj0155c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	158217	158234	.	-	.	ID=id-Cj0155c-3;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=rpmE;inference=protein motif:Prosite:PS00190;locus_tag=Cj0155c
gi|15791399|ref|NC_002163.1|	EMBL	gene	158418	159074	.	-	.	ID=gene-Cj0156c;Name=Cj0156c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0156c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	158418	159074	.	-	0	ID=cds-CAL34327.1;Parent=gene-Cj0156c;Dbxref=EnsemblGenomes-Gn:Cj0156c,EnsemblGenomes-Tr:CAL34327,GOA:Q0PBY1,InterPro:IPR006700,InterPro:IPR029026,InterPro:IPR029028,UniProtKB/TrEMBL:Q0PBY1,NCBI_GP:CAL34327.1;Name=CAL34327.1;Note=Original (2000) note: Cj0156c%2C unknown%2C len: 218 aa%3B similar to hypothetical proteins e.g. YGGJ_ECOLI (243 aa)%2C fasta scores%3B opt: 166 z-score: 226.2 E(): 2.4e-05%2C25.7%25 identity in 222 aa overlap. 43.7%25 identity to HP0374%3B~Updated (2006) note: Pfam PF04452 Protein of unknown function (DUF558) was present within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF04452;locus_tag=Cj0156c;product=conserved hypothetical protein Cj0156c;protein_id=CAL34327.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	158424	158711	.	-	.	ID=id-Cj0156c;Note=HMMPfam hit to PF04452%2C Protein of unknown function (DUF558)%2C score 1.2e-28;gbkey=misc_feature;inference=protein motif:Pfam:PF04452;locus_tag=Cj0156c
gi|15791399|ref|NC_002163.1|	EMBL	gene	159076	159483	.	-	.	ID=gene-Cj0157c;Name=Cj0157c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0157c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	159076	159483	.	-	0	ID=cds-CAL34328.1;Parent=gene-Cj0157c;Dbxref=EnsemblGenomes-Gn:Cj0157c,EnsemblGenomes-Tr:CAL34328,UniProtKB/TrEMBL:Q0PBY0,NCBI_GP:CAL34328.1;Name=CAL34328.1;Note=Original (2000) note: Cj0157c%2C probable integral membrane protein%2C len: 135 aa%3B no Hp match. Contains four probable transmembrane domains. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj0157c;product=putative integral membrane protein;protein_id=CAL34328.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	159091	159159	.	-	.	ID=id-Cj0157c;Note=4 probable transmembrane helices predicted for Cj0157c by TMHMM2.0 at aa 10-29%2C 46-68%2C 78-97 and 109-131;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0157c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	159193	159252	.	-	.	ID=id-Cj0157c;Note=4 probable transmembrane helices predicted for Cj0157c by TMHMM2.0 at aa 10-29%2C 46-68%2C 78-97 and 109-131;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0157c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	159280	159348	.	-	.	ID=id-Cj0157c;Note=4 probable transmembrane helices predicted for Cj0157c by TMHMM2.0 at aa 10-29%2C 46-68%2C 78-97 and 109-131;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0157c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	159397	159456	.	-	.	ID=id-Cj0157c;Note=4 probable transmembrane helices predicted for Cj0157c by TMHMM2.0 at aa 10-29%2C 46-68%2C 78-97 and 109-131;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0157c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	159295	159327	.	-	.	ID=id-Cj0157c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0157c
gi|15791399|ref|NC_002163.1|	EMBL	gene	159483	159908	.	-	.	ID=gene-Cj0158c;Name=Cj0158c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0158c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	159483	159908	.	-	0	ID=cds-CAL34329.1;Parent=gene-Cj0158c;Dbxref=EnsemblGenomes-Gn:Cj0158c,EnsemblGenomes-Tr:CAL34329,GOA:Q0PBX9,InterPro:IPR009056,UniProtKB/TrEMBL:Q0PBX9,NCBI_GP:CAL34329.1;Name=CAL34329.1;Note=Original (2000) note: Cj0158c%2C possible haem-binding lipoprotein%2C len: 141 aa%3B no Hp match. Contains N-terminal signal sequence with appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%2C PS00190 Cytochrome c family heme-binding site signature%2C and Pfam match to entry PF00034 cytochrome_c%2C Cytochrome c%2C score -3.00%2C E-value 0.87%3B~Updated (2006) note: No specific characterisation with acceptable identity scores identified yet. Putative kept within product function. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00190;locus_tag=Cj0158c;product=putative haem-binding lipoprotein;protein_id=CAL34329.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	159486	159689	.	-	.	ID=id-Cj0158c;Note=HMMPfam hit to PF00034%2C Cytochrome c%2C score 0.041;gbkey=misc_feature;inference=protein motif:Pfam:PF00034;locus_tag=Cj0158c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	159642	159659	.	-	.	ID=id-Cj0158c-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0158c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	159849	159881	.	-	.	ID=id-Cj0158c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0158c
gi|15791399|ref|NC_002163.1|	EMBL	gene	159908	160489	.	-	.	ID=gene-Cj0159c;Name=Cj0159c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0159c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	159908	160489	.	-	0	ID=cds-CAL34330.1;Parent=gene-Cj0159c;Dbxref=EnsemblGenomes-Gn:Cj0159c,EnsemblGenomes-Tr:CAL34330,GOA:Q0PBX8,InterPro:IPR007115,UniProtKB/TrEMBL:Q0PBX8,NCBI_GP:CAL34330.1;Name=CAL34330.1;Note=Original (2000) note: Cj0159c%2C unknown%2C len: 193 aa%3B similar in N-terminus to hypothetical proteins e.g.TR:O27296 (EMBL:AE000890) Methanobacterium thermoautotrophicum MTH1228 (161 aa)%2C fasta scores%3B opt: 140 z-score: 234.0 E(): 8.9e-06%2C 37.9%25 identity in 66 aa overlap. 35.8%25 identity to HP0933%3B~Updated (2006) note: Pfam domain PF01242 6-pyruvoyl tetrahydropterin synthase was identified within CDS. Product modified to more specific family member due to motif match with own search. No specific characterisation with acceptable identity scores carried out yet. Thus%2Cputative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF01242;locus_tag=Cj0159c;product=putative 6-pyruvoyl tetrahydropterin synthase;protein_id=CAL34330.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	160486	161229	.	-	.	ID=gene-Cj0160c;Name=Cj0160c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0160c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	160486	161229	.	-	0	ID=cds-CAL34331.1;Parent=gene-Cj0160c;Dbxref=EnsemblGenomes-Gn:Cj0160c,EnsemblGenomes-Tr:CAL34331,GOA:Q0PBX7,InterPro:IPR013785,InterPro:IPR024924,NCBI_GP:CAL34331.1;Name=CAL34331.1;Note=Original (2000) note: Cj0160c%2C unknown%2C len: 247 aa%3B similar to hypothetical proteins e.g. TR:O67826 (EMBL:AE000769) Aquifex aeolicus AQ_2035 (219 aa)%2C fasta scores%3B opt: 130 z-score: 282.9 E(): 1.7e-08%2C 28.8%25 identity in 233 aa overlap. 43.1%25 identity to HP0934%3B~Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily was identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation carried out yet%2C so putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF04055;locus_tag=Cj0160c;product=putative radical SAM domain protein;protein_id=CAL34331.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	160567	161163	.	-	.	ID=id-Cj0160c;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 3.1e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF04055;locus_tag=Cj0160c
gi|15791399|ref|NC_002163.1|	EMBL	gene	161232	162194	.	-	.	ID=gene-Cj0161c;Name=moaA;gbkey=Gene;gene=moaA;gene_biotype=protein_coding;locus_tag=Cj0161c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	161232	162194	.	-	0	ID=cds-CAL34332.1;Parent=gene-Cj0161c;Dbxref=EnsemblGenomes-Gn:Cj0161c,EnsemblGenomes-Tr:CAL34332,GOA:Q9PIW6,InterPro:IPR000385,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010505,InterPro:IPR013483,InterPro:IPR013785,NCBI_GP:CAL34332.1;Name=CAL34332.1;Note=Original (2000) note: Cj0161c%2C moaA%2C probable molybdenum cofactor biosynthesis protein A%2C len: 320 aa%3B similar to many e.g. MOAA_ECOLI molybdenum cofactor biosynthesis protein A (329 aa)%2C fasta scores%3B opt: 590 z-score: 824.3 E(): 0%2C 32.4%25 identity in 312 aa overlap. 51.7%25 identity to HP0768. Also similar to Cj1244 (29.8%25 identity in 178 aa overlap). Contains PS01305 moaA / nifB / pqqE family signature%3B~Updated (2006) note: Pfam domains PF06463 Molybdenum Cofactor Synthesis C and PF04055 Radical SAM superfamily were identified within CDS. Further support given to product funtion. Characterisation work carried out within Escherichia coli with marginal identity score. Putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Molybdopterin%3B~PMID:8361352;gbkey=CDS;gene=moaA;inference=protein motif:Prosite:PS01305;locus_tag=Cj0161c;product=putative molybdenum cofactor biosynthesis protein A;protein_id=CAL34332.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	161286	161654	.	-	.	ID=id-Cj0161c;Note=HMMPfam hit to PF06463%2C Molybdenum Cofactor Synthesis C%2C score 1.5e-47;gbkey=misc_feature;gene=moaA;inference=protein motif:Pfam:PF06463;locus_tag=Cj0161c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	161667	162152	.	-	.	ID=id-Cj0161c-2;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 5.8e-38;gbkey=misc_feature;gene=moaA;inference=protein motif:Pfam:PF04055;locus_tag=Cj0161c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	162111	162146	.	-	.	ID=id-Cj0161c-3;Note=PS01305 moaA / nifB / pqqE family signature;gbkey=misc_feature;gene=moaA;inference=protein motif:Prosite:PS01305;locus_tag=Cj0161c
gi|15791399|ref|NC_002163.1|	EMBL	gene	162207	162722	.	-	.	ID=gene-Cj0162c;Name=Cj0162c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0162c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	162207	162722	.	-	0	ID=cds-CAL34333.1;Parent=gene-Cj0162c;Dbxref=EnsemblGenomes-Gn:Cj0162c,EnsemblGenomes-Tr:CAL34333,UniProtKB/TrEMBL:Q0PBX5,NCBI_GP:CAL34333.1;Name=CAL34333.1;Note=Original (2000) note: Cj0162c%2C probable periplasmic protein%2C len: 171 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0162c;product=putative periplasmic protein;protein_id=CAL34333.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	162651	162710	.	-	.	ID=id-Cj0162c;Note=1 probable transmembrane helix predicted for Cj0162c by TMHMM2.0 at aa 5-24;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0162c
gi|15791399|ref|NC_002163.1|	EMBL	gene	162719	163216	.	-	.	ID=gene-Cj0163c;Name=Cj0163c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0163c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	162719	163216	.	-	0	ID=cds-CAL34334.1;Parent=gene-Cj0163c;Dbxref=EnsemblGenomes-Gn:Cj0163c,EnsemblGenomes-Tr:CAL34334,UniProtKB/TrEMBL:Q0PBX4,NCBI_GP:CAL34334.1;Name=CAL34334.1;Note=Original (2000) note: Cj0163c%2C unknown%2C len: 165 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0163c;product=hypothetical protein Cj0163c;protein_id=CAL34334.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	163207	164091	.	-	.	ID=gene-Cj0164c;Name=ubiA;gbkey=Gene;gene=ubiA;gene_biotype=protein_coding;locus_tag=Cj0164c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	163207	164091	.	-	0	ID=cds-CAL34335.1;Parent=gene-Cj0164c;Dbxref=EnsemblGenomes-Gn:Cj0164c,EnsemblGenomes-Tr:CAL34335,GOA:Q0PBX3,InterPro:IPR000537,InterPro:IPR006371,UniProtKB/TrEMBL:Q0PBX3,NCBI_GP:CAL34335.1;Name=CAL34335.1;Note=Original (2000) note: Cj0164c%2C ubiA%2C possible 4-hydroxybenzoate octaprenyltransferase%2C len: 294 aa%3B similar to e.g. UBIA_ECOLI 4-hydroxybenzoate octaprenyltransferase (EC 2.5.1.-) (290 aa)%2C fasta scores%3B opt: 250 z-score: 303.5 E(): 1.2e-09%2C 23.8%25 identity in 227 aa overlap. 51.2%25 identity to HP1360. Contains Pfam match to entry PF01040 CytC_assmbly_fac%2C Cytochrome c oxidase assembly factor%2C score 209.90%2C E-value 3.7e-59%3B~Updated (2006) note: Eight probable transmembrane helices predicted by TMHMM2.0. Characterised within Escherichia coli%2C however%2C identity score was unnacceptable. Thus%2C putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Menaquinone and ubiquinine%3B~PMID:15597200;gbkey=CDS;gene=ubiA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0164c;product=putative 4-hydroxybenzoate octaprenyltransferase;protein_id=CAL34335.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	163213	163281	.	-	.	ID=id-Cj0164c;Note=8 probable transmembrane helices predicted for Cj0164c by TMHMM2.0 at aa 12-34%2C 44-63%2C 96-118%2C 138-160%2C165-187%2C 207-229%2C 234-256 and 271-293;gbkey=misc_feature;gene=ubiA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0164c;part=1/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	163324	163392	.	-	.	ID=id-Cj0164c;Note=8 probable transmembrane helices predicted for Cj0164c by TMHMM2.0 at aa 12-34%2C 44-63%2C 96-118%2C 138-160%2C165-187%2C 207-229%2C 234-256 and 271-293;gbkey=misc_feature;gene=ubiA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0164c;part=2/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	163405	163473	.	-	.	ID=id-Cj0164c;Note=8 probable transmembrane helices predicted for Cj0164c by TMHMM2.0 at aa 12-34%2C 44-63%2C 96-118%2C 138-160%2C165-187%2C 207-229%2C 234-256 and 271-293;gbkey=misc_feature;gene=ubiA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0164c;part=3/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	163531	163599	.	-	.	ID=id-Cj0164c;Note=8 probable transmembrane helices predicted for Cj0164c by TMHMM2.0 at aa 12-34%2C 44-63%2C 96-118%2C 138-160%2C165-187%2C 207-229%2C 234-256 and 271-293;gbkey=misc_feature;gene=ubiA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0164c;part=4/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	163612	163680	.	-	.	ID=id-Cj0164c;Note=8 probable transmembrane helices predicted for Cj0164c by TMHMM2.0 at aa 12-34%2C 44-63%2C 96-118%2C 138-160%2C165-187%2C 207-229%2C 234-256 and 271-293;gbkey=misc_feature;gene=ubiA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0164c;part=5/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	163738	163806	.	-	.	ID=id-Cj0164c;Note=8 probable transmembrane helices predicted for Cj0164c by TMHMM2.0 at aa 12-34%2C 44-63%2C 96-118%2C 138-160%2C165-187%2C 207-229%2C 234-256 and 271-293;gbkey=misc_feature;gene=ubiA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0164c;part=6/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	163903	163962	.	-	.	ID=id-Cj0164c;Note=8 probable transmembrane helices predicted for Cj0164c by TMHMM2.0 at aa 12-34%2C 44-63%2C 96-118%2C 138-160%2C165-187%2C 207-229%2C 234-256 and 271-293;gbkey=misc_feature;gene=ubiA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0164c;part=7/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	163990	164058	.	-	.	ID=id-Cj0164c;Note=8 probable transmembrane helices predicted for Cj0164c by TMHMM2.0 at aa 12-34%2C 44-63%2C 96-118%2C 138-160%2C165-187%2C 207-229%2C 234-256 and 271-293;gbkey=misc_feature;gene=ubiA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0164c;part=8/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	163219	164034	.	-	.	ID=id-Cj0164c-2;Note=HMMPfam hit to PF01040%2C UbiA prenyltransferase family%2C score 3.1e-52;gbkey=misc_feature;gene=ubiA;inference=protein motif:Pfam:PF01040;locus_tag=Cj0164c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	163762	163794	.	-	.	ID=id-Cj0164c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ubiA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0164c
gi|15791399|ref|NC_002163.1|	EMBL	gene	164162	165031	.	+	.	ID=gene-Cj0166;Name=miaA;gbkey=Gene;gene=miaA;gene_biotype=protein_coding;locus_tag=Cj0166
gi|15791399|ref|NC_002163.1|	EMBL	CDS	164162	165031	.	+	0	ID=cds-CAL34336.1;Parent=gene-Cj0166;Dbxref=EnsemblGenomes-Gn:Cj0166,EnsemblGenomes-Tr:CAL34336,GOA:Q9PIW2,InterPro:IPR002627,InterPro:IPR018022,InterPro:IPR027417,NCBI_GP:CAL34336.1;Name=CAL34336.1;Note=Original (2000) note: Cj0166%2C miaA%2C probable tRNA delta(2)-isopentenylpyrophosphate transferase%2C len: 289 aa%3B similar to many e.g. MIAA_ECOLI tRNA delta(2)-isopentenylpyrophosphate transferase (316 aa)%2Cfasta scores%3B opt: 185 z-score: 464.4 E(): 1.3e-18%2C 29.2%25 identity in 277 aa overlap. 38.4%25 identity to HP1415. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF01715 IPP transferase identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:1999389;gbkey=CDS;gene=miaA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0166;product=tRNA delta(2)-isopentenylpyrophosphate transferase;protein_id=CAL34336.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	164186	164209	.	+	.	ID=id-Cj0166;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=miaA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0166
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	164267	164986	.	+	.	ID=id-Cj0166-2;Note=HMMPfam hit to PF01715%2C IPP transferase%2C score 5.9e-46;gbkey=misc_feature;gene=miaA;inference=protein motif:Pfam:PF01715;locus_tag=Cj0166
gi|15791399|ref|NC_002163.1|	EMBL	gene	165017	165580	.	-	.	ID=gene-Cj0167c;Name=Cj0167c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0167c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	165017	165580	.	-	0	ID=cds-CAL34337.1;Parent=gene-Cj0167c;Dbxref=EnsemblGenomes-Gn:Cj0167c,EnsemblGenomes-Tr:CAL34337,GOA:Q9PIW1,InterPro:IPR003810,InterPro:IPR022929,NCBI_GP:CAL34337.1;Name=CAL34337.1;Note=Original (2000) note: Cj0167c%2C probable integral membrane protein%2C len: 187 aa%3B similar to hypothetical proteins e.g. YEBN_ECOLI (206 aa)%2C fasta scores%3B opt: 451 z-score: 792.0 E(): 0%2C 38.1%25 identity in 197 aa overlap. No Hp match%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Also%2C Pfam domains x2 PF02659 Domain of unknown function DUF were identified within CDS. This family consists of hypothetical transmembrane proteins with unknown function. Further support given to product function. No specific characterisation yet%2C so putative included in product function. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0167c;product=putative integral membrane protein;protein_id=CAL34337.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	165026	165085	.	-	.	ID=id-Cj0167c;Note=6 probable transmembrane helices predicted for Cj0167c by TMHMM2.0 at aa 4-23%2C 36-58%2C 63-85%2C 105-127%2C131-153 and 166-185;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0167c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	165122	165190	.	-	.	ID=id-Cj0167c;Note=6 probable transmembrane helices predicted for Cj0167c by TMHMM2.0 at aa 4-23%2C 36-58%2C 63-85%2C 105-127%2C131-153 and 166-185;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0167c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	165200	165268	.	-	.	ID=id-Cj0167c;Note=6 probable transmembrane helices predicted for Cj0167c by TMHMM2.0 at aa 4-23%2C 36-58%2C 63-85%2C 105-127%2C131-153 and 166-185;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0167c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	165326	165394	.	-	.	ID=id-Cj0167c;Note=6 probable transmembrane helices predicted for Cj0167c by TMHMM2.0 at aa 4-23%2C 36-58%2C 63-85%2C 105-127%2C131-153 and 166-185;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0167c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	165407	165475	.	-	.	ID=id-Cj0167c;Note=6 probable transmembrane helices predicted for Cj0167c by TMHMM2.0 at aa 4-23%2C 36-58%2C 63-85%2C 105-127%2C131-153 and 166-185;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0167c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	165512	165571	.	-	.	ID=id-Cj0167c;Note=6 probable transmembrane helices predicted for Cj0167c by TMHMM2.0 at aa 4-23%2C 36-58%2C 63-85%2C 105-127%2C131-153 and 166-185;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0167c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	165050	165265	.	-	.	ID=id-Cj0167c-2;Note=HMMPfam hit to PF02659%2C Domain of unknown function DUF%2C score 1.5e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF02659;locus_tag=Cj0167c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	165335	165565	.	-	.	ID=id-Cj0167c-3;Note=HMMPfam hit to PF02659%2C Domain of unknown function DUF%2C score 4.5e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF02659;locus_tag=Cj0167c
gi|15791399|ref|NC_002163.1|	EMBL	gene	165728	165802	.	+	.	ID=gene-tRNA-Glu;Name=tRNA-Glu;gbkey=Gene;gene=tRNA-Glu;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	165728	165802	.	+	.	ID=rna-tRNA-Glu;Parent=gene-tRNA-Glu;Note=tRNA Glu anticodon TTC%2C Cove score 66.15;gbkey=tRNA;gene=tRNA-Glu;product=tRNA-Glu
gi|15791399|ref|NC_002163.1|	EMBL	exon	165728	165802	.	+	.	ID=exon-tRNA-Glu-1;Parent=rna-tRNA-Glu;Note=tRNA Glu anticodon TTC%2C Cove score 66.15;gbkey=tRNA;gene=tRNA-Glu;product=tRNA-Glu
gi|15791399|ref|NC_002163.1|	EMBL	gene	165938	166105	.	-	.	ID=gene-Cj0168c;Name=Cj0168c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0168c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	165938	166105	.	-	0	ID=cds-CAL34338.1;Parent=gene-Cj0168c;Dbxref=EnsemblGenomes-Gn:Cj0168c,EnsemblGenomes-Tr:CAL34338,UniProtKB/TrEMBL:Q0PBX0,NCBI_GP:CAL34338.1;Name=CAL34338.1;Note=Original (2000) note: Cj0168c%2C probable periplasmic protein%2C len: 55 aa%3B No Hp ortholog. Some similarity in C-term to Cj0909 (35.0%25 identity in 40 aa overlap). Contains probable N-terminal signal sequence%3B~Updated (2006) note: Literature search identified paper giving further support to product function. N-terminal matches to Yersinia pestis%2C acid shock protein 2 precursor. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:15632442;gbkey=CDS;locus_tag=Cj0168c;product=putative periplasmic protein;protein_id=CAL34338.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	166043	166096	.	-	.	ID=id-Cj0168c;Note=1 probable transmembrane helix predicted for Cj0168c by TMHMM2.0 at aa 4-21;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0168c
gi|15791399|ref|NC_002163.1|	EMBL	gene	166373	167035	.	+	.	ID=gene-Cj0169;Name=sodB;gbkey=Gene;gene=sodB;gene_biotype=protein_coding;locus_tag=Cj0169
gi|15791399|ref|NC_002163.1|	EMBL	CDS	166373	167035	.	+	0	ID=cds-CAL34339.1;Parent=gene-Cj0169;Dbxref=EnsemblGenomes-Gn:Cj0169,EnsemblGenomes-Tr:CAL34339,GOA:Q0PBW9,InterPro:IPR001189,InterPro:IPR019831,InterPro:IPR019832,InterPro:IPR019833,NCBI_GP:CAL34339.1;Name=CAL34339.1;Note=Original (2000) note: Cj0169%2C sodB%2C superoxide dismutase (Fe)%2C len: 220 aa%3B 99.1%25 identical to SODF_CAMJE%2C and highly simlar to many e.g. SODF_ECOLI superoxide dismutase (Fe) (EC 1.15.1.1) (192 aa)%2C fasta scores%3B opt: 740 z-score: 1209.9 E(): 0%2C 57.9%25 identity in 195 aa overlap. 61.6%25 identity to HP0389. Contains PS00088 Manganese and iron superoxide dismutases signature and Pfam match to entry PF00081 sodfe%2C Iron/manganese superoxide dismutases (SODM)%2C score 275.90%2C E-value 5.2e-79%3B~Updated (2006) note: Characterised within Campylobacter jejuni%2C so putative not added. Paper identified linking protein to glycoprotein (PMID:12186869). Functional classification -Detoxification%3B~PMID:12186869%2C PMID:8025686%2C PMID:8005660;gbkey=CDS;gene=sodB;inference=protein motif:Prosite:PS00088;locus_tag=Cj0169;product=superoxide dismutase (Fe);protein_id=CAL34339.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	166373	166615	.	+	.	ID=id-Cj0169;Note=HMMPfam hit to PF00081%2C Iron/manganese superoxide dismutases%2C alpha-%2C score 2.8e-30;gbkey=misc_feature;gene=sodB;inference=protein motif:Pfam:PF00081;locus_tag=Cj0169
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	166637	166966	.	+	.	ID=id-Cj0169-2;Note=HMMPfam hit to PF02777%2C Iron/manganese superoxide dismutases%2C C-term%2C score 3.3e-45;gbkey=misc_feature;gene=sodB;inference=protein motif:Pfam:PF02777;locus_tag=Cj0169
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	166862	166885	.	+	.	ID=id-Cj0169-3;Note=PS00088 Manganese and iron superoxide dismutases signature;gbkey=misc_feature;gene=sodB;inference=protein motif:Prosite:PS00088;locus_tag=Cj0169
gi|15791399|ref|NC_002163.1|	EMBL	gene	167050	167794	.	+	.	ID=gene-Cj0170;Name=Cj0170;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0170
gi|15791399|ref|NC_002163.1|	EMBL	CDS	167050	167295	.	+	0	ID=cds-CAL34340.1;Parent=gene-Cj0170;Dbxref=EnsemblGenomes-Gn:Cj0170,EnsemblGenomes-Tr:CAL34340,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PBW8,NCBI_GP:CAL34340.1;Name=CAL34340.1;Note=Original (2000) note: Cj0171%2C unknown%2C len: 166 aa%3B no Hp match. Contains polyporphic sequence G(9%2C11) at N-terminus%3B G11 allows translation from the upstream CDS Cj0170%2C G9 (consensus) would only allow this CDS to start at aa 47. Similar to Cj1326 (51.9%25 identity in 135 aa overlap)%2C which also contains a polymorphic sequence allowing possible translation from Cj1325%3B~Original (2000) note: Cj0170%2C unknown%2C len: 90 aa%3B no Hp match. Contains polyporphic sequence G(9%2C11) at C-terminus%3B G9 (consensus) gives this translation stop%2CG11 allows translation into the downstream CDS Cj0171. Similar to Cj1325 (73.8%25 identity in 61 aa overlap)%2C which also contains a polymorphic sequence allowing possible translation into Cj1326%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj0170 and Cj0171 as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0170;product=hypothetical protein Cj0170;protein_id=CAL34340.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	167297	167794	.	+	0	ID=cds-CAL34340.1;Parent=gene-Cj0170;Dbxref=EnsemblGenomes-Gn:Cj0170,EnsemblGenomes-Tr:CAL34340,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PBW8,NCBI_GP:CAL34340.1;Name=CAL34340.1;Note=Original (2000) note: Cj0171%2C unknown%2C len: 166 aa%3B no Hp match. Contains polyporphic sequence G(9%2C11) at N-terminus%3B G11 allows translation from the upstream CDS Cj0170%2C G9 (consensus) would only allow this CDS to start at aa 47. Similar to Cj1326 (51.9%25 identity in 135 aa overlap)%2C which also contains a polymorphic sequence allowing possible translation from Cj1325%3B~Original (2000) note: Cj0170%2C unknown%2C len: 90 aa%3B no Hp match. Contains polyporphic sequence G(9%2C11) at C-terminus%3B G9 (consensus) gives this translation stop%2CG11 allows translation into the downstream CDS Cj0171. Similar to Cj1325 (73.8%25 identity in 61 aa overlap)%2C which also contains a polymorphic sequence allowing possible translation into Cj1326%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj0170 and Cj0171 as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0170;product=hypothetical protein Cj0170;protein_id=CAL34340.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	167807	169012	.	-	.	ID=gene-Cj0172c;Name=Cj0172c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0172c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	167807	169012	.	-	0	ID=cds-CAL34341.1;Parent=gene-Cj0172c;Dbxref=EnsemblGenomes-Gn:Cj0172c,EnsemblGenomes-Tr:CAL34341,GOA:Q0PBW7,InterPro:IPR005097,InterPro:IPR016040,UniProtKB/TrEMBL:Q0PBW7,NCBI_GP:CAL34341.1;Name=CAL34341.1;Note=Original (2000) note: Cj0172c%2C unknown%2C len: 401 aa%3B similar to hypothetical proteins e.g. TR:Q55131 (EMBL:D64001) Synechocystis sp. SLR0049 (398 aa)%2C fasta scores%3B opt: 1534 z-score: 2324.2 E(): 0%2C 55.7%25 identity in 397 aa overlap. 63.8%25 identity to HP1507 conserved hypothetical ATP-binding protein%3B~Updated (2006) note: Pfam domain PF03435 Saccharopine dehydrogenase was identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation has yet been carried out. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF03435;locus_tag=Cj0172c;product=putative saccharopine dehydrogenase;protein_id=CAL34341.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	167837	169003	.	-	.	ID=id-Cj0172c;Note=HMMPfam hit to PF03435%2C Saccharopine dehydrogenase%2Cscore 2e-236;gbkey=misc_feature;inference=protein motif:Pfam:PF03435;locus_tag=Cj0172c
gi|15791399|ref|NC_002163.1|	EMBL	gene	169054	169962	.	-	.	ID=gene-Cj0173c;Name=cfbpC;gbkey=Gene;gene=cfbpC;gene_biotype=protein_coding;locus_tag=Cj0173c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	169054	169962	.	-	0	ID=cds-CAL34342.1;Parent=gene-Cj0173c;Dbxref=EnsemblGenomes-Gn:Cj0173c,EnsemblGenomes-Tr:CAL34342,GOA:Q0PBW6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PBW6,NCBI_GP:CAL34342.1;Name=CAL34342.1;Note=Original (2000) note: Cj0173c%2C possible iron-uptake ABC transport system ATP-binding protein%2C len: 302 aa%3B similar to many e.g. HITC_HAEIN iron(iii)-transport ATP-binding protein hitC (356 aa)%2C fasta scores%3B opt: 389 z-score: 783.2 E(): 0%2C 38.0%25 identity in 250 aa overlap. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2CPS00211 ABC transporters family signature and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%2C score 163.10%2CE-value 4.9e-45. No Hp ortholog%3B~Updated (2006) note: Literature search identified many supporting papers within Campylobacter jejuni (PMID:12069882) and also paper carrying out the original work within Serratia marcescens. Designated as Campylobacter ferric binding protein (Cfbp) system. Characterisation with acceptable identity score yet to be carried out. Thus%2C putative kept within product function. Functional classification - Transport/binding proteins -Cations%3B~PMID:15231804%2C PMID:12069882%2C PMID:15731081%2CPMID:2644190%2C PMID:7927717;gbkey=CDS;gene=cfbpC;inference=protein motif:Prosite:PS00211;locus_tag=Cj0173c;product=putative iron-uptake ABC transport system ATP-binding protein;protein_id=CAL34342.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	169378	169881	.	-	.	ID=id-Cj0173c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 2.3e-45;gbkey=misc_feature;gene=cfbpC;inference=protein motif:Pfam:PF00005;locus_tag=Cj0173c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	169564	169608	.	-	.	ID=id-Cj0173c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=cfbpC;inference=protein motif:Prosite:PS00211;locus_tag=Cj0173c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	169837	169860	.	-	.	ID=id-Cj0173c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=cfbpC;inference=protein motif:Prosite:PS00017;locus_tag=Cj0173c
gi|15791399|ref|NC_002163.1|	EMBL	gene	169946	171562	.	-	.	ID=gene-Cj0174c;Name=cfbpB;gbkey=Gene;gene=cfbpB;gene_biotype=protein_coding;locus_tag=Cj0174c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	169946	171562	.	-	0	ID=cds-CAL34343.1;Parent=gene-Cj0174c;Dbxref=EnsemblGenomes-Gn:Cj0174c,EnsemblGenomes-Tr:CAL34343,GOA:Q0PBW5,InterPro:IPR000515,UniProtKB/TrEMBL:Q0PBW5,NCBI_GP:CAL34343.1;Name=CAL34343.1;Note=Original (2000) note: Cj0174c%2C possible iron-uptake ABC transport system permease protein%2C len: 538 aa%3B similar to e.g. SFUB_SERMA iron(iii)-transport system permease protein (527 aa)%2C fasta scores%3B opt: 333 z-score: 335.6 E(): 1.9e-11%2C 21.5%25 identity in 522 aa overlap. No Hp match. Contains Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 27.90%2C E-value 0.00024%3B~Updated (2006) note: Literature search identified many supporting papers within Campylobacter jejuni (PMID:12069882) and also paper carrying out the original work within Serratia marcescens. Designated as Campylobacter ferric binding protein (Cfbp) system. Characterisation with acceptable identity score yet to be carried out. Thus%2C putative kept within product function. Functional classification - Transport/binding proteins -Cations%3B~PMID:15231804%2C PMID:12069882%2C PMID:15731081%2CPMID:2644190%2C PMID:7927717;gbkey=CDS;gene=cfbpB;inference=protein motif:Pfam:PF00528;locus_tag=Cj0174c;product=putative iron-uptake ABC transport system permease protein;protein_id=CAL34343.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	169982	170050	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	170144	170212	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	170273	170341	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	170384	170452	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	170510	170578	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	170621	170689	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	170774	170842	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	170936	171004	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	171065	171133	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	171191	171253	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	171290	171358	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	171458	171526	.	-	.	ID=id-Cj0174c;Note=12 probable transmembrane helices predicted for Cj0174c by TMHMM2.0 at aa 13-35%2C 69-91%2C 104-124%2C 144-166%2C187-209%2C 241-263%2C 292-314%2C 329-351%2C 371-393%2C 408-430%2C451-473 and 505-527;gbkey=misc_feature;gene=cfbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0174c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	170753	171382	.	-	.	ID=id-Cj0174c-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 5.4e-07;gbkey=misc_feature;gene=cfbpB;inference=protein motif:Pfam:PF00528;locus_tag=Cj0174c
gi|15791399|ref|NC_002163.1|	EMBL	gene	171562	172566	.	-	.	ID=gene-Cj0175c;Name=cfbpA;gbkey=Gene;gene=cfbpA;gene_biotype=protein_coding;locus_tag=Cj0175c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	171562	172566	.	-	0	ID=cds-CAL34344.1;Parent=gene-Cj0175c;Dbxref=EnsemblGenomes-Gn:Cj0175c,EnsemblGenomes-Tr:CAL34344,GOA:Q0PBW4,InterPro:IPR026045,PDB:1Y4T,PDB:3E13,UniProtKB/TrEMBL:Q0PBW4,NCBI_GP:CAL34344.1;Name=CAL34344.1;Note=Original (2000) note: Cj0175c%2C possible iron-uptake ABC transport system periplasmic iron-binding protein%2Clen: 334 aa%3B similar to e.g. HITA_HAEIN iron-utilization periplasmic protein precursor (332 aa)%2C fasta scores%3B opt: 466 z-score: 500.8 E(): 1.2e-20%2C 29.8%25 identity in 332 aa overlap. No Hp match. Contains N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF01547 Bacterial extracellular solute-binding protein identified within CDS. Further support given to product function. Literature search identified many supporting papers within Campylobacter jejuni (PMID:12069882) and also paper carrying out the original work within Serratia marcescens. Designated as Campylobacter ferric binding protein (Cfbp) system. Characterisation with acceptable identity score yet to be carried out. Thus%2C putative kept within product function. Paper identified linked protein to glycoprotein (PMID:15231804). Functional classification -Transport/binding proteins - Cations%3B~PMID:15613474%2C PMID:15231804%2C PMID:12069882%2CPMID:12186869%2C PMID:2644190;gbkey=CDS;gene=cfbpA;inference=protein motif:Pfam:PF01547;locus_tag=Cj0175c;product=putative iron-uptake ABC transport system%2Cperiplasmic iron-binding protein;protein_id=CAL34344.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	171727	172566	.	-	.	ID=id-Cj0175c;Note=HMMPfam hit to PF01547%2C Bacterial extracellular solute-binding prot%2C score 4.7e-14;gbkey=misc_feature;gene=cfbpA;inference=protein motif:Pfam:PF01547;locus_tag=Cj0175c
gi|15791399|ref|NC_002163.1|	EMBL	gene	172563	172694	.	-	.	ID=gene-Cj0176c;Name=Cj0176c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0176c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	172563	172694	.	-	0	ID=cds-CAL34345.1;Parent=gene-Cj0176c;Dbxref=EnsemblGenomes-Gn:Cj0176c,EnsemblGenomes-Tr:CAL34345,UniProtKB/TrEMBL:Q0PBW3,NCBI_GP:CAL34345.1;Name=CAL34345.1;Note=Original (2000) note: Cj0176c%2C probable lipoprotein%2C len: 43 aa%3B no Hp match. Contains N-terminal signal sequence with appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Literature search identified papers giving further clues to product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0176c;product=putative lipoprotein;protein_id=CAL34345.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	172638	172670	.	-	.	ID=id-Cj0176c;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0176c
gi|15791399|ref|NC_002163.1|	EMBL	gene	172916	173767	.	+	.	ID=gene-Cj0177;Name=Cj0177;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0177
gi|15791399|ref|NC_002163.1|	EMBL	CDS	172916	173767	.	+	0	ID=cds-CAL34346.1;Parent=gene-Cj0177;Dbxref=EnsemblGenomes-Gn:Cj0177,EnsemblGenomes-Tr:CAL34346,GOA:Q0PBW2,InterPro:IPR007314,InterPro:IPR016773,PDB:2G5G,UniProtKB/TrEMBL:Q0PBW2,NCBI_GP:CAL34346.1;Name=CAL34346.1;Note=Original (2000) note: Cj0177%2C probable lipoprotein%2Clen: 283 aa%3B simlar to TR:O68876 (EMBL:AF055999) hypothetical protein PhuW from Pseudomonas aeruginosa hemin uptake locus (295 aa)%2C fasta scores%3B opt: 375 z-score: 307.6 E(): 7.1e-10%2C 31.3%25 identity in 246 aa overlap. No Hp match. Contains N-terminal signal sequence with appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domain PF04187 Protein of unknown function%2C DUF399 identified within CDS. Literature search identified papers giving further clues to product function. Product function modified to putative iron transport protein based on information from literature. No specific characterisation with acceptable identity scores has been carried out yet. Thus%2C putative kept within product function. Functional classification -Transport/binding proteins - Cations%3B~PMID:12069882%2C PMID:15231804%2C PMID:15231804;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0177;product=putative iron transport protein;protein_id=CAL34346.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	172916	173764	.	+	.	ID=id-Cj0177;Note=HMMPfam hit to PF04187%2C Protein of unknown function%2C DUF399%2C score 5e-164;gbkey=misc_feature;inference=protein motif:Pfam:PF04187;locus_tag=Cj0177
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	172940	172972	.	+	.	ID=id-Cj0177-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0177
gi|15791399|ref|NC_002163.1|	EMBL	gene	173764	176031	.	+	.	ID=gene-Cj0178;Name=Cj0178;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0178
gi|15791399|ref|NC_002163.1|	EMBL	CDS	173764	176031	.	+	0	ID=cds-CAL34347.1;Parent=gene-Cj0178;Dbxref=EnsemblGenomes-Gn:Cj0178,EnsemblGenomes-Tr:CAL34347,GOA:Q0PBW1,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:Q0PBW1,NCBI_GP:CAL34347.1;Name=CAL34347.1;Note=Original (2000) note: Cj0178%2C possible outer membrane siderophore receptor%2C len: 755 aa%3B similar to e.g. YC17_HAEIN probable tonB-dependent receptor HI1217 (913 aa)%2C fasta scores%3B opt: 440 z-score: 1818.4 E(): 0%2C32.7%25 identity in 912 aa overlap%2C and TR:O68881 (EMBL:AF055999) outer membrane hemin receptor PhuR from Pseudomonas aeruginosa (764 aa)%2C fasta scores%3B opt: 145 z-score: 207.4 E(): 0.00027 22.3%25 identity in 806 aa overlap. No Hp match. Contains N-terminal signal sequence%3B~Updated (2006) note: Pfam domains PF07715 TonB-dependent Receptor Plug Domain and PF00593 TonB dependent receptor identified within CDS. Literature search identified papers giving further clues to product function. Product function modified to more specific family member. No specific characterisation with acceptable identity scores has been carried out yet. Thus%2Cputative kept within product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:15731081%2C PMID:15632442%2C PMID:15231804%2CPMID:12069882;gbkey=CDS;inference=protein motif:Pfam:PF07715;locus_tag=Cj0178;product=putative TonB-denpendent outer membrane receptor;protein_id=CAL34347.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	173881	174234	.	+	.	ID=id-Cj0178;Note=HMMPfam hit to PF07715%2C TonB-dependent Receptor Plug Domain%2C score 9.2e-13;gbkey=misc_feature;inference=protein motif:Pfam:PF07715;locus_tag=Cj0178
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	175135	176028	.	+	.	ID=id-Cj0178-2;Note=HMMPfam hit to PF00593%2C TonB dependent receptor%2Cscore 1.5e-22;gbkey=misc_feature;inference=protein motif:Pfam:PF00593;locus_tag=Cj0178
gi|15791399|ref|NC_002163.1|	EMBL	gene	176043	176804	.	+	.	ID=gene-Cj0179;Name=exbB1;gbkey=Gene;gene=exbB1;gene_biotype=protein_coding;locus_tag=Cj0179
gi|15791399|ref|NC_002163.1|	EMBL	CDS	176043	176804	.	+	0	ID=cds-CAL34348.1;Parent=gene-Cj0179;Dbxref=EnsemblGenomes-Gn:Cj0179,EnsemblGenomes-Tr:CAL34348,GOA:Q0PBW0,InterPro:IPR002898,UniProtKB/TrEMBL:Q0PBW0,NCBI_GP:CAL34348.1;Name=CAL34348.1;Note=Original (2000) note: Cj0179%2C exbB1%2C biopolymer transport protein%2C len: 253 aa%3B highly similar to e.g. EXBB_ECOLI biopolymer transport exbB protein (244 aa)%2Cfasta scores%3B opt: 537 z-score: 811.2 E(): 0%2C 46.3%25 identity in 216 aa overlap. No Hp ortholog%3B~Updated (2006) note: Pfam domain PF01618 MotA/TolQ/ExbB proton channel family identified within CDS. Also%2C three probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not added. Cj0179-Cj0181 (exbB1%2C exbD1%2C tonB1) function as an outer-membrane energy transducer system. Functional classification -Transport/binding proteins - Other%3B~PMID:7642501%2C PMID:8437515%2C PMID:15632442%2CPMID:12069882;gbkey=CDS;gene=exbB1;inference=protein motif:TMHMM:2.0;locus_tag=Cj0179;product=biopolymer transport protein;protein_id=CAL34348.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	176211	176264	.	+	.	ID=id-Cj0179;Note=3 probable transmembrane helices predicted for Cj0179 by TMHMM2.0 at aa 57-74%2C 155-177 and 197-219;gbkey=misc_feature;gene=exbB1;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0179;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	176505	176573	.	+	.	ID=id-Cj0179;Note=3 probable transmembrane helices predicted for Cj0179 by TMHMM2.0 at aa 57-74%2C 155-177 and 197-219;gbkey=misc_feature;gene=exbB1;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0179;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	176631	176699	.	+	.	ID=id-Cj0179;Note=3 probable transmembrane helices predicted for Cj0179 by TMHMM2.0 at aa 57-74%2C 155-177 and 197-219;gbkey=misc_feature;gene=exbB1;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0179;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	176322	176756	.	+	.	ID=id-Cj0179-2;Note=HMMPfam hit to PF01618%2C MotA/TolQ/ExbB proton channel family%2C score 8.6e-47;gbkey=misc_feature;gene=exbB1;inference=protein motif:Pfam:PF01618;locus_tag=Cj0179
gi|15791399|ref|NC_002163.1|	EMBL	gene	176791	177201	.	+	.	ID=gene-Cj0180;Name=exbD1;gbkey=Gene;gene=exbD1;gene_biotype=protein_coding;locus_tag=Cj0180
gi|15791399|ref|NC_002163.1|	EMBL	CDS	176791	177201	.	+	0	ID=cds-CAL34349.1;Parent=gene-Cj0180;Dbxref=EnsemblGenomes-Gn:Cj0180,EnsemblGenomes-Tr:CAL34349,GOA:Q0PBV9,InterPro:IPR003400,UniProtKB/TrEMBL:Q0PBV9,NCBI_GP:CAL34349.1;Name=CAL34349.1;Note=Original (2000) note: Cj0180%2C exbD1%2C biopolymer transport protein%2C len: 136 aa%3B highly similar to e.g. EXBD_ECOLI biopolymer transport exbD protein (141 aa)%2Cfasta scores%3B opt: 356 z-score: 629.2 E(): 8.7e-28%2C 42.9%25 identity in 119 aa overlap. No Hp ortholog%3B~Updated (2006) note: Pfam domain PF02472 Biopolymer transport protein ExbD/TolR identified within CDS. Also%2Cone probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity scores. Thus%2C putative not added. Cj0179-Cj0181 (exbB1%2C exbD1%2CtonB1) function as an outer-membrane energy transducer system. Functional classification - Transport/binding proteins - Other%3B~PMID:7642501%2C PMID:8437515%2C PMID:15632442%2CPMID:12069882;gbkey=CDS;gene=exbD1;inference=protein motif:TMHMM:2.0;locus_tag=Cj0180;product=biopolymer transport protein;protein_id=CAL34349.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	176815	177195	.	+	.	ID=id-Cj0180;Note=HMMPfam hit to PF02472%2C Biopolymer transport protein ExbD/TolR%2C score 8.4e-22;gbkey=misc_feature;gene=exbD1;inference=protein motif:Pfam:PF02472;locus_tag=Cj0180
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	176827	176895	.	+	.	ID=id-Cj0180-2;Note=1 probable transmembrane helix predicted for Cj0180 by TMHMM2.0 at aa 13-35;gbkey=misc_feature;gene=exbD1;inference=protein motif:TMHMM:2.0;locus_tag=Cj0180
gi|15791399|ref|NC_002163.1|	EMBL	gene	177203	177949	.	+	.	ID=gene-Cj0181;Name=tonB1;gbkey=Gene;gene=tonB1;gene_biotype=protein_coding;locus_tag=Cj0181
gi|15791399|ref|NC_002163.1|	EMBL	CDS	177203	177949	.	+	0	ID=cds-CAL34350.1;Parent=gene-Cj0181;Dbxref=EnsemblGenomes-Gn:Cj0181,EnsemblGenomes-Tr:CAL34350,GOA:Q0PBV8,InterPro:IPR006260,UniProtKB/TrEMBL:Q0PBV8,NCBI_GP:CAL34350.1;Name=CAL34350.1;Note=Original (2000) note: Cj0181%2C tonB1%2C possible tonB transport protein%2C len 248 aa%3B similar to e.g. TONB_PSEPU tonB protein (243 aa)%2C fasta scores%3B opt: 220 z-score: 317.2 E(): 2.1e-10%2C 29.5%25 identity in 149 aa overlap. No Hp match%3B~Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0. Characterised within Pseudomonas putida with marginal identity score. Putative not added. Cj0179-Cj0181 (exbB1%2C exbD1%2C tonB1) function as an outer-membrane energy transducer system. Functional classification - Transport/binding proteins - Other%3B~PMID:7642501%2C PMID:8437515%2C PMID:15632442%2CPMID:12069882;gbkey=CDS;gene=tonB1;inference=protein motif:TMHMM:2.0;locus_tag=Cj0181;product=TonB transport protein;protein_id=CAL34350.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	177221	177289	.	+	.	ID=id-Cj0181;Note=1 probable transmembrane helix predicted for Cj0181 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;gene=tonB1;inference=protein motif:TMHMM:2.0;locus_tag=Cj0181
gi|15791399|ref|NC_002163.1|	EMBL	gene	177995	179200	.	+	.	ID=gene-Cj0182;Name=Cj0182;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0182
gi|15791399|ref|NC_002163.1|	EMBL	CDS	177995	179200	.	+	0	ID=cds-CAL34351.1;Parent=gene-Cj0182;Dbxref=EnsemblGenomes-Gn:Cj0182,EnsemblGenomes-Tr:CAL34351,GOA:Q0PBV7,InterPro:IPR009248,InterPro:IPR011527,UniProtKB/TrEMBL:Q0PBV7,NCBI_GP:CAL34351.1;Name=CAL34351.1;Note=Original (2000) note: Cj0182%2C probable transmembrane transport protein%2C len: 401 aa%3B similar to e.g. SBMA_ECOLI sbmA protein (406 aa)%2C fasta scores%3B opt: 450 z-score: 1235.4 E(): 0%2C 35.4%25 identity in 395 aa overlap. No Hp ortholog%3B~Updated (2006) note: Prosite domain PS50929%2C ABC transporter integral membrane type-1 fused domain profile identified within CDS. Six probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores (with full sequence alignment)%2C has been carried out yet. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0182;product=putative transmembrane transport protein;protein_id=CAL34351.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	178031	178099	.	+	.	ID=id-Cj0182;Note=6 probable transmembrane helices predicted for Cj0182 by TMHMM2.0 at aa 13-35%2C 127-149%2C 197-219%2C 244-266%2C316-330 and 334-356;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0182;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	178373	178441	.	+	.	ID=id-Cj0182;Note=6 probable transmembrane helices predicted for Cj0182 by TMHMM2.0 at aa 13-35%2C 127-149%2C 197-219%2C 244-266%2C316-330 and 334-356;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0182;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	178583	178651	.	+	.	ID=id-Cj0182;Note=6 probable transmembrane helices predicted for Cj0182 by TMHMM2.0 at aa 13-35%2C 127-149%2C 197-219%2C 244-266%2C316-330 and 334-356;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0182;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	178724	178792	.	+	.	ID=id-Cj0182;Note=6 probable transmembrane helices predicted for Cj0182 by TMHMM2.0 at aa 13-35%2C 127-149%2C 197-219%2C 244-266%2C316-330 and 334-356;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0182;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	178940	178984	.	+	.	ID=id-Cj0182;Note=6 probable transmembrane helices predicted for Cj0182 by TMHMM2.0 at aa 13-35%2C 127-149%2C 197-219%2C 244-266%2C316-330 and 334-356;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0182;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	178994	179062	.	+	.	ID=id-Cj0182;Note=6 probable transmembrane helices predicted for Cj0182 by TMHMM2.0 at aa 13-35%2C 127-149%2C 197-219%2C 244-266%2C316-330 and 334-356;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0182;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	179299	180657	.	+	.	ID=gene-Cj0183;Name=Cj0183;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0183
gi|15791399|ref|NC_002163.1|	EMBL	CDS	179299	180657	.	+	0	ID=cds-CAL34352.1;Parent=gene-Cj0183;Dbxref=EnsemblGenomes-Gn:Cj0183,EnsemblGenomes-Tr:CAL34352,GOA:Q0PBV6,InterPro:IPR000644,InterPro:IPR002550,InterPro:IPR005170,InterPro:IPR016166,InterPro:IPR016169,UniProtKB/TrEMBL:Q0PBV6,NCBI_GP:CAL34352.1;Name=CAL34352.1;Note=Original (2000) note: Cj0183%2C probable integral membrane protein with haemolysin domain%2C len: 452 aa%3B similar to many members of the UPF0053 family e.g. YUGS_BACSU (434 aa)%2C fasta scores%3B opt: 999 z-score: 1508.9 E(): 0%2C 38.1%25 identity in 430 aa overlap. Also similar in C-terminal half to haemolysins e.g. HLYC_TREHY Treponema hyodysenteriae hemolysin C (268 aa)%2C fasta scores%3B opt: 447 z-score: 468.1 E(): 8.1e-19%2C 32.5%25 identity in 237 aa overlap. 54.3%25 identity to HP1490. Contains 2x Pfam match to entry PF00571 CBS%2C CBS domain%2Cscores 26.10%2C E-value 0.00082 and 40.50%2C E-value 3.7e-08%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. No specific characterisation with acceptable identity scores identified yet. Thus%2C putative kept within product function. Functional classification - Pathogenicity;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0183;product=putative integral membrane protein with haemolysin domain;protein_id=CAL34352.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	179356	179424	.	+	.	ID=id-Cj0183;Note=4 probable transmembrane helices predicted for Cj0183 by TMHMM2.0 at aa 20-42%2C 75-97%2C 117-139 and 162-184;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0183;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	179521	179589	.	+	.	ID=id-Cj0183;Note=4 probable transmembrane helices predicted for Cj0183 by TMHMM2.0 at aa 20-42%2C 75-97%2C 117-139 and 162-184;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0183;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	179647	179715	.	+	.	ID=id-Cj0183;Note=4 probable transmembrane helices predicted for Cj0183 by TMHMM2.0 at aa 20-42%2C 75-97%2C 117-139 and 162-184;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0183;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	179782	179850	.	+	.	ID=id-Cj0183;Note=4 probable transmembrane helices predicted for Cj0183 by TMHMM2.0 at aa 20-42%2C 75-97%2C 117-139 and 162-184;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0183;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	179368	179961	.	+	.	ID=id-Cj0183-2;Note=HMMPfam hit to PF01595%2C Domain of unknown function DUF21%2C score 3.2e-83;gbkey=misc_feature;inference=protein motif:Pfam:PF01595;locus_tag=Cj0183
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	180016	180180	.	+	.	ID=id-Cj0183-3;Note=HMMPfam hit to PF00571%2C CBS domain%2C score 2.5e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF00571;locus_tag=Cj0183
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	180202	180363	.	+	.	ID=id-Cj0183-4;Note=HMMPfam hit to PF00571%2C CBS domain%2C score 6.5e-12;gbkey=misc_feature;inference=protein motif:Pfam:PF00571;locus_tag=Cj0183
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	180400	180639	.	+	.	ID=id-Cj0183-5;Note=HMMPfam hit to PF03471%2C Transporter associated domain%2C score 1.3e-22;gbkey=misc_feature;inference=protein motif:Pfam:PF03471;locus_tag=Cj0183
gi|15791399|ref|NC_002163.1|	EMBL	gene	180702	181856	.	-	.	ID=gene-Cj0184c;Name=Cj0184c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0184c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	180702	181856	.	-	0	ID=cds-CAL34353.1;Parent=gene-Cj0184c;Dbxref=EnsemblGenomes-Gn:Cj0184c,EnsemblGenomes-Tr:CAL34353,GOA:Q0PBV5,InterPro:IPR004843,InterPro:IPR006186,InterPro:IPR027417,InterPro:IPR029052,UniProtKB/TrEMBL:Q0PBV5,NCBI_GP:CAL34353.1;Name=CAL34353.1;Note=Original (2000) note: Cj0184c%2C possible serine/threonine protein phosphatase%2C len: 384 aa%3B similar in part to many eukarotic serine/threonine protein phosphatases e.g. PP12_SCHPO serine/threonine protein phosphatase PP1-2 (322 aa)%2C fasta scores%3B opt: 140 z-score: 290.0 E(): 6.8e-09%2C 31.3%25 identity in 131 aa overlap. No Hp match. Contains Pfam match to entry PF00149 STphosphatase%2C Ser/Thr protein phosphatases%2C score 6.90%2CE-value 0.39%3B~Updated (2006) note: Pfam domain PF00149 STphosphatase was changed in Pfam database to Calcineurin-like phosphoesterase. Characterisation work has been carried out mainly in eukaryotes with marginal identity scores. Possible was changed to putative. Functional classification - Signal transduction;gbkey=CDS;inference=protein motif:Pfam:PF00149;locus_tag=Cj0184c;product=putative serine/threonine protein phosphatase;protein_id=CAL34353.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	180813	181355	.	-	.	ID=id-Cj0184c;Note=HMMPfam hit to PF00149%2C Calcineurin-like phosphoesterase%2C score 6.6e-12;gbkey=misc_feature;inference=protein motif:Pfam:PF00149;locus_tag=Cj0184c
gi|15791399|ref|NC_002163.1|	EMBL	gene	181866	182075	.	-	.	ID=gene-Cj0185c;Name=Cj0185c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0185c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	181866	182075	.	-	0	ID=cds-CAL34354.1;Parent=gene-Cj0185c;Dbxref=EnsemblGenomes-Gn:Cj0185c,EnsemblGenomes-Tr:CAL34354,InterPro:IPR013988,UniProtKB/TrEMBL:Q0PBV4,NCBI_GP:CAL34354.1;Name=CAL34354.1;Note=Original (2000) note: Cj0185c%2C unknown%2C len: 69 aa%3B similar to part of phnA proteins (involved in alkylphosphonate uptake) from several organisms e.g. PHNA_ECOLI phnA protein (111 aa)%2C fasta scores%3B opt: 238 z-score: 482.4 E(): 1.3e-19%2C 55.9%25 identity in 68 aa overlap. 45.6%25 identity in 68 aa overlap to HP0872 (109 aa)%3B~Updated (2006) note: Pfam domain PF03831 PhnA protein was identified within CDS. Characterisation work within Escherichia coli has been carried out with acceptable identity scores. However%2C sequence alignment was only partial. Product changed from phnA-like protein to putative phnA domain protein. Functional classification - Transport/binding proteins - Other%3B~PMID:9300819;gbkey=CDS;inference=protein motif:Pfam:PF03831;locus_tag=Cj0185c;product=putative phnA domain protein;protein_id=CAL34354.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	181911	182075	.	-	.	ID=id-Cj0185c;Note=HMMPfam hit to PF03831%2C PhnA protein%2C score 3.1e-30;gbkey=misc_feature;inference=protein motif:Pfam:PF03831;locus_tag=Cj0185c
gi|15791399|ref|NC_002163.1|	EMBL	gene	182068	182787	.	-	.	ID=gene-Cj0186c;Name=Cj0186c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0186c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	182068	182787	.	-	0	ID=cds-CAL34355.1;Parent=gene-Cj0186c;Dbxref=EnsemblGenomes-Gn:Cj0186c,EnsemblGenomes-Tr:CAL34355,GOA:Q0PBV3,InterPro:IPR005496,UniProtKB/TrEMBL:Q0PBV3,NCBI_GP:CAL34355.1;Name=CAL34355.1;Note=Original (2000) note: Cj0186c%2C probable integral membrane protein%2C len: 239 aa%3B similar to many hypothetical proteins e.g. YGDQ_HAEIN HI0056 (237 aa)%2Cfasta scores%3B opt: 964 z-score: 1727.7 E(): 0%2C 64.3%25 identity in 230 aa overlap. 50.0%25 identity to HP1343%3B~Updated (2006) note: Pfam domain PF03741 Integral membrane protein TerC family was identified within CDS. Seven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Product modified to more specific family member based on motif match. No specific characterisation with acceptable identity scores has been carried out yet. Thus%2C putative kept within product function. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0186c;product=putative TerC family integral membrane protein;protein_id=CAL34355.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	182095	182151	.	-	.	ID=id-Cj0186c;Note=7 probable transmembrane helices predicted for Cj0186c by TMHMM2.0 at aa 15-37%2C 50-69%2C 84-103%2C 124-146%2C151-173%2C 186-203 and 213-231;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0186c;part=1/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	182179	182232	.	-	.	ID=id-Cj0186c;Note=7 probable transmembrane helices predicted for Cj0186c by TMHMM2.0 at aa 15-37%2C 50-69%2C 84-103%2C 124-146%2C151-173%2C 186-203 and 213-231;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0186c;part=2/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	182269	182337	.	-	.	ID=id-Cj0186c;Note=7 probable transmembrane helices predicted for Cj0186c by TMHMM2.0 at aa 15-37%2C 50-69%2C 84-103%2C 124-146%2C151-173%2C 186-203 and 213-231;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0186c;part=3/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	182350	182418	.	-	.	ID=id-Cj0186c;Note=7 probable transmembrane helices predicted for Cj0186c by TMHMM2.0 at aa 15-37%2C 50-69%2C 84-103%2C 124-146%2C151-173%2C 186-203 and 213-231;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0186c;part=4/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	182479	182538	.	-	.	ID=id-Cj0186c;Note=7 probable transmembrane helices predicted for Cj0186c by TMHMM2.0 at aa 15-37%2C 50-69%2C 84-103%2C 124-146%2C151-173%2C 186-203 and 213-231;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0186c;part=5/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	182581	182640	.	-	.	ID=id-Cj0186c;Note=7 probable transmembrane helices predicted for Cj0186c by TMHMM2.0 at aa 15-37%2C 50-69%2C 84-103%2C 124-146%2C151-173%2C 186-203 and 213-231;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0186c;part=6/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	182677	182745	.	-	.	ID=id-Cj0186c;Note=7 probable transmembrane helices predicted for Cj0186c by TMHMM2.0 at aa 15-37%2C 50-69%2C 84-103%2C 124-146%2C151-173%2C 186-203 and 213-231;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0186c;part=7/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	182110	182751	.	-	.	ID=id-Cj0186c-2;Note=HMMPfam hit to PF03741%2C Integral membrane protein TerC family%2C score 2.9e-96;gbkey=misc_feature;inference=protein motif:Pfam:PF03741;locus_tag=Cj0186c
gi|15791399|ref|NC_002163.1|	EMBL	gene	182859	183425	.	-	.	ID=gene-Cj0187c;Name=purN;gbkey=Gene;gene=purN;gene_biotype=protein_coding;locus_tag=Cj0187c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	182859	183425	.	-	0	ID=cds-CAL34356.1;Parent=gene-Cj0187c;Dbxref=EnsemblGenomes-Gn:Cj0187c,EnsemblGenomes-Tr:CAL34356,GOA:Q0PBV2,InterPro:IPR002376,InterPro:IPR004607,UniProtKB/TrEMBL:Q0PBV2,NCBI_GP:CAL34356.1;Name=CAL34356.1;Note=Original (2000) note: Cj0187c%2C purN%2C probable phosphoribosylglycinamide formyltransferase%2C len: 188 aa%3B similar to e.g. PUR3_ECOLI phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) (212 aa)%2C fasta scores%3B opt: 406 z-score: 654.6 E(): 3.3e-29%2C 38.6%25 identity in 189 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00551 formyl_transf%2C Formyl transferase%2C score 177.90%2C E-value 4.4e-50%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification -Purine ribonucleotide biosynthesis%3B~PMID:3301838;gbkey=CDS;gene=purN;inference=protein motif:Pfam:PF00551;locus_tag=Cj0187c;product=phosphoribosylglycinamide formyltransferase;protein_id=CAL34356.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	182877	183419	.	-	.	ID=id-Cj0187c;Note=HMMPfam hit to PF00551%2C Formyl transferase%2C score 2.9e-50;gbkey=misc_feature;gene=purN;inference=protein motif:Pfam:PF00551;locus_tag=Cj0187c
gi|15791399|ref|NC_002163.1|	EMBL	gene	183416	184786	.	-	.	ID=gene-Cj0188c;Name=Cj0188c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0188c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	183416	184786	.	-	0	ID=cds-CAL34357.1;Parent=gene-Cj0188c;Dbxref=EnsemblGenomes-Gn:Cj0188c,EnsemblGenomes-Tr:CAL34357,GOA:Q0PBV1,InterPro:IPR000631,InterPro:IPR004443,InterPro:IPR017953,InterPro:IPR029056,UniProtKB/TrEMBL:Q0PBV1,NCBI_GP:CAL34357.1;Name=CAL34357.1;Note=Original (2000) note: Cj0188c%2C unknown%2C len: 456 aa%3B similar to members of the UPF0031 family e.g. YJEF_ECOLI (515 aa)%2C fasta scores%3B opt: 267 z-score: 441.8 E(): 2.4e-17%2C 29.9%25 identity in 418 aa overlap. 35.9%25 identity to HP1363. Contains PS01050 Uncharacterized protein family UPF0031 signature 2 and Pfam match to entry PF01256 UPF0031%2C Uncharacterized protein family UPF0031%2Cscore 96.30%2C E-value 6e-25%3B~Updated (2006) note: Previous uncharacterised Pfam motifs have now been designated as PF01256 Carbohydrate kinase and PF03853 YjeF-related protein N-terminus. Product modified to more specific family member based on motif match. No specific characterisation has yet been carried out. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS01050;locus_tag=Cj0188c;product=putative kinase;protein_id=CAL34357.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	183422	184087	.	-	.	ID=id-Cj0188c;Note=HMMPfam hit to PF01256%2C Carbohydrate kinase%2C score 4.5e-26;gbkey=misc_feature;inference=protein motif:Pfam:PF01256;locus_tag=Cj0188c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	183560	183592	.	-	.	ID=id-Cj0188c-2;Note=PS01050 Uncharacterized protein family UPF0031 signature 2;gbkey=misc_feature;inference=protein motif:Prosite:PS01050;locus_tag=Cj0188c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	184253	184735	.	-	.	ID=id-Cj0188c-3;Note=HMMPfam hit to PF03853%2C YjeF-related protein N-terminus%2C score 2.1e-54;gbkey=misc_feature;inference=protein motif:Pfam:PF03853;locus_tag=Cj0188c
gi|15791399|ref|NC_002163.1|	EMBL	gene	184770	185468	.	-	.	ID=gene-Cj0189c;Name=Cj0189c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0189c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	184770	185468	.	-	0	ID=cds-CAL34358.1;Parent=gene-Cj0189c;Dbxref=EnsemblGenomes-Gn:Cj0189c,EnsemblGenomes-Tr:CAL34358,InterPro:IPR021139,InterPro:IPR025605,InterPro:IPR029060,UniProtKB/TrEMBL:Q0PBV0,NCBI_GP:CAL34358.1;Name=CAL34358.1;Note=Original (2000) note: Cj0189c%2C unknown%2C len: 232 aa%3B similar to hypothetical proteins e.g. TR:P73622 (EMBL:D90908) Synechocystis sp. (249 aa)%2C fasta scores%3B opt: 351 z-score: 629.7 E(): 8.1e-28%2C 30.1%25 identity in 246 aa overlap. No Hp match%3B~Updated (2006) note: Pfam PF01936 Protein of unknown function (DUF88) was present within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01936;locus_tag=Cj0189c;product=conserved hypothetical protein Cj0189c;protein_id=CAL34358.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	185037	185462	.	-	.	ID=id-Cj0189c;Note=HMMPfam hit to PF01936%2C Protein of unknown function DUF88%2C score 1.1e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF01936;locus_tag=Cj0189c
gi|15791399|ref|NC_002163.1|	EMBL	gene	185470	186975	.	-	.	ID=gene-Cj0190c;Name=Cj0190c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0190c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	185470	186975	.	-	0	ID=cds-CAL34359.1;Parent=gene-Cj0190c;Dbxref=EnsemblGenomes-Gn:Cj0190c,EnsemblGenomes-Tr:CAL34359,GOA:Q0PBU9,InterPro:IPR000523,InterPro:IPR004482,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR025158,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PBU9,NCBI_GP:CAL34359.1;Name=CAL34359.1;Note=Original (2000) note: Cj0190c%2C unknown%2C len: 501 aa%3B similar to prokaryotic hypothetical proteins e.g. YIFB_ECOLI (516 aa)%2C fasta scores%3B opt: 670 z-score: 1088.3 E(): 0%2C 34.0%25 identity in 497 aa overlap%2C and more distantly to members of the eukaryotic MCM family of DNA replication regulatory factors e.g. MCM6_RAT DNA replication licensing factor MCM6 (509 aa)%2C fasta scores%3B opt: 152 z-score: 247.8 E(): 1.5e-06%2C 23.5%25 identity in 345 aa overlap. 47.7%25 identity to HP0792 (anotated as sigma-54 interacting protein). Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF01078 Mg_chelatase%2C Magnesium chelatase%2C subunit ChlI%2C score 127.80%2C E-value 2e-34. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0190c;product=conserved hypothetical protein Cj0190c;protein_id=CAL34359.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	185923	186927	.	-	.	ID=id-Cj0190c;Note=HMMPfam hit to PF01078%2C Magnesium chelatase%2Csubunit ChlI%2C score 9.4e-40;gbkey=misc_feature;inference=protein motif:Pfam:PF01078;locus_tag=Cj0190c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	186277	186300	.	-	.	ID=id-Cj0190c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0190c
gi|15791399|ref|NC_002163.1|	EMBL	gene	186972	187499	.	-	.	ID=gene-Cj0191c;Name=def;gbkey=Gene;gene=def;gene_biotype=protein_coding;locus_tag=Cj0191c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	186972	187499	.	-	0	ID=cds-CAL34360.1;Parent=gene-Cj0191c;Dbxref=EnsemblGenomes-Gn:Cj0191c,EnsemblGenomes-Tr:CAL34360,GOA:Q9PIT8,InterPro:IPR000181,InterPro:IPR023635,NCBI_GP:CAL34360.1;Name=CAL34360.1;Note=Original (2000) note: Cj0191c%2C def%2C polypeptide deformylase%2C len: 175 aa%3B simlar to many e.g. DEF_ECOLI polypeptide deformylase (EC 3.5.1.31) (168 aa)%2C fasta scores%3B opt: 376 z-score: 549.9 E(): 2.2e-23%2C 38.2%25 identity in 165 aa overlap. 55.6%25 identity to HP0793%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Protein translation and modification%3B~PMID:7896716;gbkey=CDS;gene=def;locus_tag=Cj0191c;product=polypeptide deformylase;protein_id=CAL34360.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	187026	187496	.	-	.	ID=id-Cj0191c;Note=HMMPfam hit to PF01327%2C Polypeptide deformylase%2Cscore 4.7e-50;gbkey=misc_feature;gene=def;inference=protein motif:Pfam:PF01327;locus_tag=Cj0191c
gi|15791399|ref|NC_002163.1|	EMBL	gene	187535	188119	.	-	.	ID=gene-Cj0192c;Name=clpP;gbkey=Gene;gene=clpP;gene_biotype=protein_coding;locus_tag=Cj0192c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	187535	188119	.	-	0	ID=cds-CAL34361.1;Parent=gene-Cj0192c;Dbxref=EnsemblGenomes-Gn:Cj0192c,EnsemblGenomes-Tr:CAL34361,GOA:P54413,InterPro:IPR001907,InterPro:IPR018215,InterPro:IPR023562,InterPro:IPR029045,NCBI_GP:CAL34361.1;Name=CAL34361.1;Note=Original (2000) note: Cj0192c%2C clpP%2C ATP-dependent clp protease proteolytic subunit%2C len: 194 aa%3B similar to many e.g. CLPP_ECOLI ATP-dependent clp protease proteolytic subunit (EC 3.4.21.92) (207 aa)%2C fasta scores%3B opt: 887 z-score: 1437.6 E(): 0%2C 68.6%25 identity in 188 aa overlap. 78.8%25 identity to HP0794. Contains PS00381 Endopeptidase Clp serine active site%2C PS00382 Endopeptidase Clp histidine active site and Pfam match to entry PF00574 CLP_protease%2C Clp protease%2C score 425.00%2CE-value 6.7e-124%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification -Degradation of macromolecules - Proteins%2C peptides and glycopeptides%3B~PMID:2197275%2C PMID:7670637;gbkey=CDS;gene=clpP;inference=protein motif:Prosite:PS00382;locus_tag=Cj0192c;product=ATP-dependent Clp protease proteolytic subunit;protein_id=CAL34361.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	187544	188089	.	-	.	ID=id-Cj0192c;Note=HMMPfam hit to PF00574%2C Clp protease%2C score 4e-136;gbkey=misc_feature;gene=clpP;inference=protein motif:Pfam:PF00574;locus_tag=Cj0192c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	187748	187789	.	-	.	ID=id-Cj0192c-2;Note=PS00382 Endopeptidase Clp histidine active site;gbkey=misc_feature;gene=clpP;inference=protein motif:Prosite:PS00382;locus_tag=Cj0192c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	187805	187837	.	-	.	ID=id-Cj0192c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=clpP;inference=protein motif:Prosite:PS00013;locus_tag=Cj0192c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	187820	187855	.	-	.	ID=id-Cj0192c-4;Note=PS00381 Endopeptidase Clp serine active site;gbkey=misc_feature;gene=clpP;inference=protein motif:Prosite:PS00381;locus_tag=Cj0192c
gi|15791399|ref|NC_002163.1|	EMBL	gene	188119	189453	.	-	.	ID=gene-Cj0193c;Name=tig;gbkey=Gene;gene=tig;gene_biotype=protein_coding;locus_tag=Cj0193c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	188119	189453	.	-	0	ID=cds-CAL34362.1;Parent=gene-Cj0193c;Dbxref=EnsemblGenomes-Gn:Cj0193c,EnsemblGenomes-Tr:CAL34362,GOA:Q46108,InterPro:IPR001179,InterPro:IPR005215,InterPro:IPR008880,InterPro:IPR008881,InterPro:IPR027304,NCBI_GP:CAL34362.1;Name=CAL34362.1;Note=Original (2000) note: Cj0193c%2C tig%2C trigger factor (peptidyl-prolyl cis/trans isomerase%2C chaperone)%2C len: 444 aa%3B 97.0%25 identical to TIG_CAMJE (410 aa) and similar to e.g. TIG_ECOLI trigger factor (432 aa)%2C fasta scores%3B opt: 596 z-score: 615.1 E(): 5.2e-27%2C 29.7%25 identity in 437 aa overlap. 42.0%25 identity to HP0795%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Putative not added to product function. Functional classification - Chaperones%2Cchaperonins%2C heat shock%3B~PMID:7670637;gbkey=CDS;gene=tig;locus_tag=Cj0193c;product=trigger factor (peptidyl-prolyl cis /trans isomerase%2C chaperone);protein_id=CAL34362.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	188185	188727	.	-	.	ID=id-Cj0193c;Note=HMMPfam hit to PF05698%2C Bacterial trigger factor protein (TF) C-ter%2C score 2e-42;gbkey=misc_feature;gene=tig;inference=protein motif:Pfam:PF05698;locus_tag=Cj0193c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	188728	188985	.	-	.	ID=id-Cj0193c-2;Note=HMMPfam hit to PF00254%2C FKBP-type peptidyl-prolyl cis-trans isomera%2C score 1.2e-27;gbkey=misc_feature;gene=tig;inference=protein motif:Pfam:PF00254;locus_tag=Cj0193c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	188995	189453	.	-	.	ID=id-Cj0193c-3;Note=HMMPfam hit to PF05697%2C Bacterial trigger factor protein (TF)%2C score 1.3e-44;gbkey=misc_feature;gene=tig;inference=protein motif:Pfam:PF05697;locus_tag=Cj0193c
gi|15791399|ref|NC_002163.1|	EMBL	gene	189596	190168	.	+	.	ID=gene-Cj0194;Name=folE;gbkey=Gene;gene=folE;gene_biotype=protein_coding;locus_tag=Cj0194
gi|15791399|ref|NC_002163.1|	EMBL	CDS	189596	190168	.	+	0	ID=cds-CAL34363.1;Parent=gene-Cj0194;Dbxref=EnsemblGenomes-Gn:Cj0194,EnsemblGenomes-Tr:CAL34363,GOA:P51594,InterPro:IPR001474,InterPro:IPR018234,InterPro:IPR020602,NCBI_GP:CAL34363.1;Name=CAL34363.1;Note=Original (2000) note: Cj0194%2C folE%2C GTP cyclohydrolase I%2C len: 190 aa%3B identical to%2C but slightly longer than%2C GCH1_CAMJE (179 aa)%2C and highly similar to many e.g. GCH1_SYNY3 GTP cyclohydrolase I (EC 3.5.4.16) (234 aa)%2C fasta scores%3B opt: 760 z-score: 1327.9 E(): 0%2C60.8%25 identity in 181 aa overlap. 49.7%25 identity to HP0928. Contains PS00859 GTP cyclohydrolase I signature 1 and Pfam match to entry PF01227 GTP_cyclohydro_I%2C GTP cyclohydrolase I%2C score 377.10%2C E-value 1.8e-109%3B~Updated (2006) note: Characterised within Campylobacter jejuni and many others. Putative not added. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Folic acid%3B~PMID:7670637%2C PMID:1459137;gbkey=CDS;gene=folE;inference=protein motif:Prosite:PS00859;locus_tag=Cj0194;product=GTP cyclohydrolase I;protein_id=CAL34363.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	189779	190093	.	+	.	ID=id-Cj0194;Note=HMMPfam hit to PF01227%2C GTP cyclohydrolase I%2C score 9.9e-56;gbkey=misc_feature;gene=folE;inference=protein motif:Pfam:PF01227;locus_tag=Cj0194
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	189779	189829	.	+	.	ID=id-Cj0194-2;Note=PS00859 GTP cyclohydrolase I signature 1;gbkey=misc_feature;gene=folE;inference=protein motif:Prosite:PS00859;locus_tag=Cj0194
gi|15791399|ref|NC_002163.1|	EMBL	gene	190168	191553	.	+	.	ID=gene-Cj0195;Name=fliI;gbkey=Gene;gene=fliI;gene_biotype=protein_coding;locus_tag=Cj0195
gi|15791399|ref|NC_002163.1|	EMBL	CDS	190168	191553	.	+	0	ID=cds-CAL34364.1;Parent=gene-Cj0195;Dbxref=EnsemblGenomes-Gn:Cj0195,EnsemblGenomes-Tr:CAL34364,GOA:Q0PBU4,InterPro:IPR000194,InterPro:IPR003593,InterPro:IPR005714,InterPro:IPR020003,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PBU4,NCBI_GP:CAL34364.1;Name=CAL34364.1;Note=Original (2000) note: Cj0195%2C fliI%2Cflagellum-specific ATP synthase%2C len: FLII_ECOLI flagellum-specific ATP synthase (EC 3.6.1.34) (457 aa)%2Cfasta scores%3B opt: 1115 z-score: 1219.0 E(): 0%2C 43.8%25 identity in 443 aa overlap. 63.9%25 identity to HP1420. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2CPS00152 ATP synthase alpha and beta subunits signature and Pfam match to entry PF00006 ATP-synt_ab%2C ATP synthase alpha and beta subunits%2C score 349.10%2C E-value 4.7e-101%3B~Updated (2006) note: Characterised within Helicobacter pylori with acceptable identity score. Putative not added to product function. Functional classification - Surface structures%3B~PMID:9231413%2C PMID:10225855;gbkey=CDS;gene=fliI;inference=protein motif:Prosite:PS00152;locus_tag=Cj0195;product=flagellum-specific ATP synthase;protein_id=CAL34364.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	190597	191229	.	+	.	ID=id-Cj0195;Note=HMMPfam hit to PF00006%2C ATP synthase alpha/beta family%2C nucleotid%2C score 4.1e-104;gbkey=misc_feature;gene=fliI;inference=protein motif:Pfam:PF00006;locus_tag=Cj0195
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	190660	190683	.	+	.	ID=id-Cj0195-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=fliI;inference=protein motif:Prosite:PS00017;locus_tag=Cj0195
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	191200	191229	.	+	.	ID=id-Cj0195-3;Note=PS00152 ATP synthase alpha and beta subunits signature;gbkey=misc_feature;gene=fliI;inference=protein motif:Prosite:PS00152;locus_tag=Cj0195
gi|15791399|ref|NC_002163.1|	EMBL	gene	191556	192893	.	-	.	ID=gene-Cj0196c;Name=purF;gbkey=Gene;gene=purF;gene_biotype=protein_coding;locus_tag=Cj0196c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	191556	192893	.	-	0	ID=cds-CAL34365.1;Parent=gene-Cj0196c;Dbxref=EnsemblGenomes-Gn:Cj0196c,EnsemblGenomes-Tr:CAL34365,GOA:Q0PBU3,InterPro:IPR000836,InterPro:IPR005854,InterPro:IPR017932,InterPro:IPR029055,InterPro:IPR029057,UniProtKB/TrEMBL:Q0PBU3,NCBI_GP:CAL34365.1;Name=CAL34365.1;Note=Original (2000) note: Cj0196c%2C purF%2Camidophosphoribosyltransferase%2C len: 445 aa%3B highly similar to many e.g.PUR1_BACSU amidophosphoribosyltransferase precursor (EC 2.4.2.14) (476 aa)%2C fasta scores%3B opt: 1328 z-score: 1541.6 E(): 0%2C46.1%25 identity in 451 aa overlap. No Hp ortholog. Contains PS00103 Purine/pyrimidine phosphoribosyl transferases signature and Pfam match to entry PF00310 GATase_2%2CGlutamine amidotransferases class-II%2C score 169.50%2CE-value 4e-57%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Purine ribonucleotide biosynthesis%3B~PMID:9271502%2C PMID:6411717;gbkey=CDS;gene=purF;inference=protein motif:Prosite:PS00103;locus_tag=Cj0196c;product=amidophosphoribosyltransferase;protein_id=CAL34365.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	191730	192149	.	-	.	ID=id-Cj0196c;Note=HMMPfam hit to PF00156%2C Phosphoribosyl transferase domain%2C score 2.2e-12;gbkey=misc_feature;gene=purF;inference=protein motif:Pfam:PF00156;locus_tag=Cj0196c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	191829	191867	.	-	.	ID=id-Cj0196c-2;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature;gbkey=misc_feature;gene=purF;inference=protein motif:Prosite:PS00103;locus_tag=Cj0196c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	192306	192890	.	-	.	ID=id-Cj0196c-3;Note=HMMPfam hit to PF00310%2C Glutamine amidotransferases class-II%2C score 2.8e-27;gbkey=misc_feature;gene=purF;inference=protein motif:Pfam:PF00310;locus_tag=Cj0196c
gi|15791399|ref|NC_002163.1|	EMBL	gene	192895	193623	.	-	.	ID=gene-Cj0197c;Name=dapB;gbkey=Gene;gene=dapB;gene_biotype=protein_coding;locus_tag=Cj0197c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	192895	193623	.	-	0	ID=cds-CAL34366.1;Parent=gene-Cj0197c;Dbxref=EnsemblGenomes-Gn:Cj0197c,EnsemblGenomes-Tr:CAL34366,GOA:Q9PIT2,InterPro:IPR000846,InterPro:IPR011770,InterPro:IPR016040,InterPro:IPR022663,InterPro:IPR022664,InterPro:IPR023940,NCBI_GP:CAL34366.1;Name=CAL34366.1;Note=Original (2000) note: Cj0197c%2C dapB%2C probable dihydrodipicolinate reductase%2C len: 242 aa%3B highly similar to many e.g. DAPB_ECOLI dihydrodipicolinate reductase (EC 1.3.1.26) (273 aa)%2C fasta scores%3B opt: 544 z-score: 912.5 E(): 0%2C 39.6%25 identity in 265 aa overlap. 42.0%25 identity to HP0510. Contains PS01298 Dihydrodipicolinate reductase signature and Pfam match to entry PF01113 DapB%2CDihydrodipicolinate reductase%2C score 164.40%2C E-value 1.9e-45%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Aspartate family%3B~PMID:9398235%2C PMID:6094578;gbkey=CDS;gene=dapB;inference=protein motif:Prosite:PS01298;locus_tag=Cj0197c;product=dihydrodipicolinate reductase;protein_id=CAL34366.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	192901	193311	.	-	.	ID=id-Cj0197c;Note=HMMPfam hit to PF05173%2C Dihydrodipicolinate reductase%2C C-terminus%2C score 1e-75;gbkey=misc_feature;gene=dapB;inference=protein motif:Pfam:PF05173;locus_tag=Cj0197c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	193195	193248	.	-	.	ID=id-Cj0197c-2;Note=PS01298 Dihydrodipicolinate reductase signature;gbkey=misc_feature;gene=dapB;inference=protein motif:Prosite:PS01298;locus_tag=Cj0197c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	193318	193620	.	-	.	ID=id-Cj0197c-3;Note=HMMPfam hit to PF01113%2C Dihydrodipicolinate reductase%2C N-terminus%2C score 1.7e-38;gbkey=misc_feature;gene=dapB;inference=protein motif:Pfam:PF01113;locus_tag=Cj0197c
gi|15791399|ref|NC_002163.1|	EMBL	gene	193686	194867	.	-	.	ID=gene-Cj0198c;Name=Cj0198c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0198c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	193686	194867	.	-	0	ID=cds-CAL34367.1;Parent=gene-Cj0198c;Dbxref=EnsemblGenomes-Gn:Cj0198c,EnsemblGenomes-Tr:CAL34367,GOA:Q0PBU1,InterPro:IPR003593,InterPro:IPR008824,InterPro:IPR008921,InterPro:IPR021886,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PBU1,NCBI_GP:CAL34367.1;Name=CAL34367.1;Note=Original (2000) note: Cj0198c%2C unknown%2C len: 393 aa%3B similar to hypothetical proteins e.g. YCAJ_ECOLI (447 aa)%2C fasta scores%3B opt: 339 z-score: 796.4 E(): 0%2C 32.8%25 identity in 381 aa overlap%2C and less strongly to several helicases e.g. RUVB_HELPY holliday junction DNA helicase ruvB (336 aa)%2C fasta scores%3B opt: 204 z-score: 280.5 E(): 2.3e-08%2C 28.8%25 identity in 278 aa overlap. 49.9%25 identity to HP1026. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF00004 ATPase family associated with various cellular activities (AAA)%2Cwas identified within CDS. Further support given to product function. No specific characterisation has been carried out yet. Product function unchanged. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0198c;product=helicase-like protein;protein_id=CAL34367.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	194262	194762	.	-	.	ID=id-Cj0198c;Note=HMMPfam hit to PF00004%2C ATPase family associated with various cellul%2C score 6.5e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF00004;locus_tag=Cj0198c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	194724	194747	.	-	.	ID=id-Cj0198c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0198c
gi|15791399|ref|NC_002163.1|	EMBL	gene	194867	195988	.	-	.	ID=gene-Cj0199c;Name=Cj0199c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0199c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	194867	195988	.	-	0	ID=cds-CAL34368.1;Parent=gene-Cj0199c;Dbxref=EnsemblGenomes-Gn:Cj0199c,EnsemblGenomes-Tr:CAL34368,UniProtKB/TrEMBL:Q0PBU0,NCBI_GP:CAL34368.1;Name=CAL34368.1;Note=Original (2000) note: Cj0199c%2C probable periplasmic protein%2C len: 373 aa%3B no Hp match. Contains N-terminal signal sequence. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0199c;product=putative periplasmic protein;protein_id=CAL34368.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	195917	195976	.	-	.	ID=id-Cj0199c;Note=1 probable transmembrane helix predicted for Cj0199c by TMHMM2.0 at aa 5-24;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0199c
gi|15791399|ref|NC_002163.1|	EMBL	gene	196123	196470	.	-	.	ID=gene-Cj0200c;Name=Cj0200c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0200c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	196123	196470	.	-	0	ID=cds-CAL34369.1;Parent=gene-Cj0200c;Dbxref=EnsemblGenomes-Gn:Cj0200c,EnsemblGenomes-Tr:CAL34369,UniProtKB/TrEMBL:Q0PBT9,NCBI_GP:CAL34369.1;Name=CAL34369.1;Note=Original (2000) note: Cj0200c%2C probable periplasmic protein%2C len: 115 aa%3B no Hp match. Contains N-terminal signal sequence%3B~Updated (2006) note: Literature search papers giving further clues to product function. Paper (PMID:12186869) links protein to glycoprotein. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:15554967%2C PMID:12186869;gbkey=CDS;locus_tag=Cj0200c;product=putative periplasmic protein;protein_id=CAL34369.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	196534	197139	.	-	.	ID=gene-Cj0201c;Name=Cj0201c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0201c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	196534	197139	.	-	0	ID=cds-CAL34370.1;Parent=gene-Cj0201c;Dbxref=EnsemblGenomes-Gn:Cj0201c,EnsemblGenomes-Tr:CAL34370,UniProtKB/TrEMBL:Q0PBT8,NCBI_GP:CAL34370.1;Name=CAL34370.1;Note=Original (2000) note: Cj0201c%2C probable integral membrane protein%2C len: 201 aa%3B no Hp match. Contains possible transmembrane domain at N-terminus and PS00216 Sugar transport proteins signature 1. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00216;locus_tag=Cj0201c;product=putative integral membrane protein;protein_id=CAL34370.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	196711	196758	.	-	.	ID=id-Cj0201c;Note=PS00216 Sugar transport proteins signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00216;locus_tag=Cj0201c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	197062	197121	.	-	.	ID=id-Cj0201c-2;Note=1 probable transmembrane helix predicted for Cj0201c by TMHMM2.0 at aa 7-26;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0201c
gi|15791399|ref|NC_002163.1|	EMBL	gene	197123	197464	.	-	.	ID=gene-Cj0202c;Name=Cj0202c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0202c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	197123	197464	.	-	0	ID=cds-CAL34371.1;Parent=gene-Cj0202c;Dbxref=EnsemblGenomes-Gn:Cj0202c,EnsemblGenomes-Tr:CAL34371,InterPro:IPR024267,PDB:3K7C,UniProtKB/TrEMBL:Q0PBT7,NCBI_GP:CAL34371.1;Name=CAL34371.1;Note=Original (2000) note: Cj0202c%2C unknown%2C len: 113 aa. No Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0202c;product=hypothetical protein Cj0202c;protein_id=CAL34371.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	197707	199053	.	+	.	ID=gene-Cj0203;Name=Cj0203;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0203
gi|15791399|ref|NC_002163.1|	EMBL	CDS	197707	199053	.	+	0	ID=cds-CAL34372.1;Parent=gene-Cj0203;Dbxref=EnsemblGenomes-Gn:Cj0203,EnsemblGenomes-Tr:CAL34372,GOA:Q0PBT6,InterPro:IPR004680,InterPro:IPR014738,UniProtKB/TrEMBL:Q0PBT6,NCBI_GP:CAL34372.1;Name=CAL34372.1;Note=Original (2000) note: Cj0203%2C probable transmembrane transport protein%2C len: 448 aa%3B some similarity to e.g. CITM_BACSU Mg2+/citrate complex secondary transporter (433 aa)%2C fasta scores%3B opt: 702 z-score: 964.3 E(): 0%2C 28.7%25 identity in 449 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03600 Citrate transporter was identified within CDS. Twelve probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member due to motif match. Some characterisation work has been carried out within Bacillus subtilis%2C however%2C identity scores were marginal. Putative kept within product function. Functional classification - Transport/binding proteins -Other%3B~PMID:8892821;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0203;product=putative citrate transporter;protein_id=CAL34372.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	197716	197769	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=1/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	197788	197841	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=2/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	197854	197922	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=3/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	197956	198024	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=4/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	198082	198150	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=5/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	198187	198246	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=6/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	198289	198357	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=7/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	198451	198552	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=8/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	198610	198669	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=9/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	198727	198795	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=10/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	198823	198891	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=11/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	198988	199047	.	+	.	ID=id-Cj0203;Note=12 probable transmembrane helices predicted for Cj0203 by TMHMM2.0 at aa 4-21%2C 28-45%2C 50-72%2C 84-106%2C126-148%2C 161-180%2C 195-217%2C 249-282%2C 302-321%2C 341-363%2C373-395 and 428-447;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0203;part=12/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	197728	198906	.	+	.	ID=id-Cj0203-2;Note=HMMPfam hit to PF03600%2C Citrate transporter%2C score 7.1e-122;gbkey=misc_feature;inference=protein motif:Pfam:PF03600;locus_tag=Cj0203
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	197794	197826	.	+	.	ID=id-Cj0203-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0203
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	198913	198945	.	+	.	ID=id-Cj0203-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0203
gi|15791399|ref|NC_002163.1|	EMBL	gene	199236	201233	.	+	.	ID=gene-Cj0204;Name=Cj0204;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0204
gi|15791399|ref|NC_002163.1|	EMBL	CDS	199236	201233	.	+	0	ID=cds-CAL34373.1;Parent=gene-Cj0204;Dbxref=EnsemblGenomes-Gn:Cj0204,EnsemblGenomes-Tr:CAL34373,GOA:Q0PBT5,InterPro:IPR004813,InterPro:IPR004814,UniProtKB/TrEMBL:Q0PBT5,NCBI_GP:CAL34373.1;Name=CAL34373.1;Note=Original (2000) note: Cj0204%2C probable integral membrane protein%2C len: 665 aa%3B 98.9%25 identity in 369 aa overlap to TR:Q46110 (EMBL:X76062) C. jejuni ORF CJO1.1 (381 aa). Similar to hypothetical proteins e.g. Y561_HAEIN HI0561/560 (633 aa)%2C fasta scores%3B opt: 2119 z-score: 1501.8 E(): 0%2C 53.6%25 identity in 640 aa overlap%2C and in C-terminus to TR:Q51156 (EMBL:L09189) Neisseria meningitidis ORF associated with capsule gene complex (282 aa)%2C fasta scores%3B opt: 880 z-score: 1097.6 E(): 0%2C 51.3%25 identity in 273 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03169 OPT oligopeptide transporter protein was identified within CDS. Sixteen probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member due to motif match. Putative kept within product function. Functional classification - Transport/binding proteins -Other%3B~PMID:7489896;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0204;product=putative oligopeptide transporter%2C OPT family;protein_id=CAL34373.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	199263	201092	.	+	.	ID=id-Cj0204;Note=HMMPfam hit to PF03169%2C OPT oligopeptide transporter protein%2C score 1.1e-95;gbkey=misc_feature;inference=protein motif:Pfam:PF03169;locus_tag=Cj0204
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	199272	199340	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=1/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	199350	199418	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=2/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	199452	199520	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=3/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	199530	199598	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=4/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	199719	199787	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=5/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	199797	199865	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=6/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	199869	199937	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=7/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	200175	200234	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=8/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	200268	200336	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=9/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	200364	200432	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=10/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	200451	200519	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=11/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	200583	200651	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=12/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	200757	200825	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=13/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	200868	200936	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=14/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	201027	201095	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=15/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	201138	201206	.	+	.	ID=id-Cj0204-2;Note=16 probable transmembrane helices predicted for Cj0204 by TMHMM2.0 at aa 13-35%2C 39-61%2C 73-95%2C 99-121%2C162-184%2C 188-210%2C 212-234%2C 314-333%2C 345-367%2C 377-399%2C406-428%2C 450-472%2C 508-530%2C 545-567%2C 598-620 and 635-657;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0204;part=16/16;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	200298	200330	.	+	.	ID=id-Cj0204-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0204
gi|15791399|ref|NC_002163.1|	EMBL	gene	201307	202110	.	+	.	ID=gene-Cj0205;Name=uppP;gbkey=Gene;gene=uppP;gene_biotype=protein_coding;locus_tag=Cj0205
gi|15791399|ref|NC_002163.1|	EMBL	CDS	201307	202110	.	+	0	ID=cds-CAL34374.1;Parent=gene-Cj0205;Dbxref=EnsemblGenomes-Gn:Cj0205,EnsemblGenomes-Tr:CAL34374,GOA:Q9PIS4,InterPro:IPR003824,NCBI_GP:CAL34374.1;Name=CAL34374.1;Note=Original (2000) note: Cj0205%2C bacA%2C possible undecaprenol kinase (bacitracin resistance protein)%2C len: 267 aa%3B 98.6%25 identity in 138 aa overlap to TR:Q46111 C. jejuni ORF CJO1.2 (138 aa). Simlar to e.g. BACA_ECOLI bacitracin resistance protein (putative undecaprenol kinase) (273 aa)%2C fasta scores%3B opt: 483 z-score: 947.5 E(): 0%2C 43.7%25 identity in 270 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02673 Bacitracin resistance protein BacA was identified within CDS. Seven probable transmembrane helices predicted by TMHMM2.0. Literature search identified characterisation papers within Escherichia coli that show further specification with product functionality (PMID:15778224). Product function modified to more specific family member. Identity scores were acceptable. Thus%2C putative not added to product function. Functional classification -Drug/analogue sensitivity%3B~PMID:7489896%2C PMID:8389741%2C PMID:15138271%2CPMID:15778224;gbkey=CDS;gene=uppP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0205;product=undecaprenyl-diphosphatase;protein_id=CAL34374.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	201319	202056	.	+	.	ID=id-Cj0205;Note=HMMPfam hit to PF02673%2C Bacitracin resistance protein BacA%2C score 3.2e-133;gbkey=misc_feature;gene=uppP;inference=protein motif:Pfam:PF02673;locus_tag=Cj0205
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	201325	201393	.	+	.	ID=id-Cj0205-2;Note=7 probable transmembrane helices predicted for Cj0205 by TMHMM2.0 at aa 7-29%2C 44-66%2C 71-90%2C 100-119%2C172-194%2C 209-231 and 236-258;gbkey=misc_feature;gene=uppP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0205;part=1/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	201436	201504	.	+	.	ID=id-Cj0205-2;Note=7 probable transmembrane helices predicted for Cj0205 by TMHMM2.0 at aa 7-29%2C 44-66%2C 71-90%2C 100-119%2C172-194%2C 209-231 and 236-258;gbkey=misc_feature;gene=uppP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0205;part=2/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	201517	201576	.	+	.	ID=id-Cj0205-2;Note=7 probable transmembrane helices predicted for Cj0205 by TMHMM2.0 at aa 7-29%2C 44-66%2C 71-90%2C 100-119%2C172-194%2C 209-231 and 236-258;gbkey=misc_feature;gene=uppP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0205;part=3/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	201604	201663	.	+	.	ID=id-Cj0205-2;Note=7 probable transmembrane helices predicted for Cj0205 by TMHMM2.0 at aa 7-29%2C 44-66%2C 71-90%2C 100-119%2C172-194%2C 209-231 and 236-258;gbkey=misc_feature;gene=uppP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0205;part=4/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	201820	201888	.	+	.	ID=id-Cj0205-2;Note=7 probable transmembrane helices predicted for Cj0205 by TMHMM2.0 at aa 7-29%2C 44-66%2C 71-90%2C 100-119%2C172-194%2C 209-231 and 236-258;gbkey=misc_feature;gene=uppP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0205;part=5/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	201931	201999	.	+	.	ID=id-Cj0205-2;Note=7 probable transmembrane helices predicted for Cj0205 by TMHMM2.0 at aa 7-29%2C 44-66%2C 71-90%2C 100-119%2C172-194%2C 209-231 and 236-258;gbkey=misc_feature;gene=uppP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0205;part=6/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	202012	202080	.	+	.	ID=id-Cj0205-2;Note=7 probable transmembrane helices predicted for Cj0205 by TMHMM2.0 at aa 7-29%2C 44-66%2C 71-90%2C 100-119%2C172-194%2C 209-231 and 236-258;gbkey=misc_feature;gene=uppP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0205;part=7/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	202241	204049	.	+	.	ID=gene-Cj0206;Name=thrS;gbkey=Gene;gene=thrS;gene_biotype=protein_coding;locus_tag=Cj0206
gi|15791399|ref|NC_002163.1|	EMBL	CDS	202241	204049	.	+	0	ID=cds-CAL34375.1;Parent=gene-Cj0206;Dbxref=EnsemblGenomes-Gn:Cj0206,EnsemblGenomes-Tr:CAL34375,GOA:Q9PIS3,InterPro:IPR002314,InterPro:IPR002320,InterPro:IPR004154,InterPro:IPR006195,InterPro:IPR012947,InterPro:IPR018163,NCBI_GP:CAL34375.1;Name=CAL34375.1;Note=Original (2000) note: Cj0206%2C thrS%2C threonyl-tRNA synthetase%2C len: 602 aa%3B similar to many e.g. SYT_ECOLI threonyl-tRNA synthetase (EC 6.1.1.3) (642 aa)%2C fasta scores%3B opt: 1669 z-score: 1426.5 E(): 0%2C 43.0%25 identity in 603 aa overlap. 64.4%25 identity to HP0123. Contains PS00179 and PS00339 Aminoacyl-transfer RNA synthetases class-II signatures 1 and 2%2C and Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetases class II (Gly%2C His%2CPro and Ser)%2C score 284.30%2C E-value 1.5e-81%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:6353409%2C PMID:10881191;gbkey=CDS;gene=thrS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0206;product=threonyl-tRNA synthetase;protein_id=CAL34375.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	202922	203383	.	+	.	ID=id-Cj0206;Note=HMMPfam hit to PF00587%2C tRNA synthetase class II core domain (%2C score 1e-48;gbkey=misc_feature;gene=thrS;inference=protein motif:Pfam:PF00587;locus_tag=Cj0206
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	203222	203287	.	+	.	ID=id-Cj0206-2;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=thrS;inference=protein motif:Prosite:PS00179;locus_tag=Cj0206
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	203678	203707	.	+	.	ID=id-Cj0206-3;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=thrS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0206
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	203756	204028	.	+	.	ID=id-Cj0206-4;Note=HMMPfam hit to PF03129%2C Anticodon binding domain%2Cscore 2.9e-26;gbkey=misc_feature;gene=thrS;inference=protein motif:Pfam:PF03129;locus_tag=Cj0206
gi|15791399|ref|NC_002163.1|	EMBL	gene	204046	204564	.	+	.	ID=gene-Cj0207;Name=infC;gbkey=Gene;gene=infC;gene_biotype=protein_coding;locus_tag=Cj0207
gi|15791399|ref|NC_002163.1|	EMBL	CDS	204046	204564	.	+	0	ID=cds-CAL34376.1;Parent=gene-Cj0207;Dbxref=EnsemblGenomes-Gn:Cj0207,EnsemblGenomes-Tr:CAL34376,GOA:Q9PIS2,InterPro:IPR001288,InterPro:IPR019813,InterPro:IPR019814,InterPro:IPR019815,NCBI_GP:CAL34376.1;Name=CAL34376.1;Note=Original (2000) note: Cj0207%2C infC%2C translation initiation factor IF-3%2C len: 172 aa%3B similar to e.g. IF3_BACSU translation initiation factor IF-3 (171 aa)%2Cfasta scores%3B opt: 523 z-score: 933.6 E(): 0%2C 46.4%25 identity in 166 aa overlap. 66.1%25 identity to HP0124. Contains PS00938 Initiation factor 3 signature and Pfam match to entry PF00707 IF3%2C Translation initiation factor IF-3%2C score 158.60%2C E-value 1.1e-43%3B~Updated (2006) note: Characterised within Bacillus stearothermophilus with acceptable identity score. Putative not added to product function. Functional classification - Protein translation and modification%3B~PMID:2779520;gbkey=CDS;gene=infC;inference=protein motif:Prosite:PS00938;locus_tag=Cj0207;product=translation initiation factor IF-3;protein_id=CAL34376.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	204055	204282	.	+	.	ID=id-Cj0207;Note=HMMPfam hit to PF05198%2C Translation initiation factor IF-3%2C N-termin%2C score 2.5e-47;gbkey=misc_feature;gene=infC;inference=protein motif:Pfam:PF05198;locus_tag=Cj0207
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	204223	204264	.	+	.	ID=id-Cj0207-2;Note=PS00938 Initiation factor 3 signature;gbkey=misc_feature;gene=infC;inference=protein motif:Prosite:PS00938;locus_tag=Cj0207
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	204295	204558	.	+	.	ID=id-Cj0207-3;Note=HMMPfam hit to PF00707%2C Translation initiation factor IF-3%2C C-termin%2C score 3.5e-31;gbkey=misc_feature;gene=infC;inference=protein motif:Pfam:PF00707;locus_tag=Cj0207
gi|15791399|ref|NC_002163.1|	EMBL	gene	204603	205694	.	+	.	ID=gene-Cj0208;Name=Cj0208;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0208
gi|15791399|ref|NC_002163.1|	EMBL	CDS	204603	205694	.	+	0	ID=cds-CAL34377.1;Parent=gene-Cj0208;Dbxref=EnsemblGenomes-Gn:Cj0208,EnsemblGenomes-Tr:CAL34377,GOA:Q0PBT1,InterPro:IPR002052,InterPro:IPR012327,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PBT1,NCBI_GP:CAL34377.1;Name=CAL34377.1;Note=Original (2000) note: Cj0208%2C probable DNA modification methylase (adenine-specific methyltransferase)%2C len: 363 aa%3B similar to many e.g. MTN3_NEILA modification methylase NlaIII (EC 2.1.1.72) (334 aa)%2C fasta scores%3B opt: 215 z-score: 401.1 E(): 4.4e-15%2C 31.7%25 identity in 366 aa overlap. 29.6%25 identity to HP1208 ulcer associated adenine specific DNA methyltransferase. Contains PS00092 N-6 Adenine-specific DNA methylases signature%3B~Updated (2006) note: Pfam domain PF02086 D12 class N6 adenine-specific DNA methyltransferase was identified within CDS. Further support given to product function. Characterised within Neisseria lactamica with marginal identity scores. Putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:2277628;gbkey=CDS;inference=protein motif:Prosite:PS00092;locus_tag=Cj0208;product=putative DNA modification methylase (adenine-specific methyltransferase);protein_id=CAL34377.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	204645	205571	.	+	.	ID=id-Cj0208;Note=HMMPfam hit to PF02086%2C D12 class N6 adenine-specific DNA met%2C score 2.6e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF02086;locus_tag=Cj0208
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	205314	205334	.	+	.	ID=id-Cj0208-2;Note=PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00092;locus_tag=Cj0208
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	206063	209195	.	+	.	ID=gene-Cj0223;Name=Cj0223;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Cj0223;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	206063	206308	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	206308	206691	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	206724	206939	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	206939	206974	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	206974	207063	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	207095	207310	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	207314	207637	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	207636	207770	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	207775	207843	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	207843	207980	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	208012	208203	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	208203	208337	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	208336	208473	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	208475	208666	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	208673	208846	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	208852	208950	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	208954	209055	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	209055	209195	.	+	0	ID=cds-Cj0223;Parent=gene-Cj0223;Note=Original (2000) note: Cj0223%2C probable pseudogene%2Clen: 3423 bp similar to several members of the IgA protease/haemaglutinin/sepA family e.g. IGA2_HAEIN immunoglobulin A1 protease precursor (EC 3.4.21.72)%2CTR:Q54151 (EMBL:U35656) Shigella flexneri she hemagglutinin%2C and TR:Q54165 (EMBL:Z48219) Shigella flexneri sepA gene precursor. No apparent Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score (aligning whole sequence)%2Chas been carried out yet. Thus%2C putative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Pathogenicity%3B~PMID:10225873%2C PMID:10531204;gbkey=CDS;locus_tag=Cj0223;product=pseudogene (putative IgA protease family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	209279	210307	.	+	.	ID=gene-Cj0224;Name=argC;gbkey=Gene;gene=argC;gene_biotype=protein_coding;locus_tag=Cj0224
gi|15791399|ref|NC_002163.1|	EMBL	CDS	209279	210307	.	+	0	ID=cds-CAL34379.1;Parent=gene-Cj0224;Dbxref=EnsemblGenomes-Gn:Cj0224,EnsemblGenomes-Tr:CAL34379,GOA:Q9PIS0,InterPro:IPR000534,InterPro:IPR000706,InterPro:IPR012280,InterPro:IPR016040,InterPro:IPR023013,NCBI_GP:CAL34379.1;Name=CAL34379.1;Note=Original (2000) note: Cj0224%2C argC%2C probable N-acetyl-gamma-glutamyl-phosphate reductase%2C len: 342 aa%3B similar to many e.g. ARGC_BACSU N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) (346 aa)%2C fasta scores%3B opt: 980 z-score: 1444.4 E(): 0%2C46.2%25 identity in 338 aa overlap. No Hp ortholog. Contains Pfam match to entry PF01118 Semialdhyde_dh%2C Semialdehyde dehydrogenase%2C score 259.10%2C E-value 5.8e-74%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Glutamate family%3B~PMID:10588044%2C PMID:3106155;gbkey=CDS;gene=argC;inference=protein motif:Pfam:PF01118;locus_tag=Cj0224;product=N-acetyl-gamma-glutamyl-phosphate reductase;protein_id=CAL34379.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	209282	209707	.	+	.	ID=id-Cj0224;Note=HMMPfam hit to PF01118%2C Semialdehyde dehydrogenase%2CNAD bindi%2C score 1.1e-35;gbkey=misc_feature;gene=argC;inference=protein motif:Pfam:PF01118;locus_tag=Cj0224
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	209744	210220	.	+	.	ID=id-Cj0224-2;Note=HMMPfam hit to PF02774%2C Semialdehyde dehydrogenase%2Cdimerisat%2C score 2.1e-41;gbkey=misc_feature;gene=argC;inference=protein motif:Pfam:PF02774;locus_tag=Cj0224
gi|15791399|ref|NC_002163.1|	EMBL	gene	210317	210763	.	+	.	ID=gene-Cj0225;Name=Cj0225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0225
gi|15791399|ref|NC_002163.1|	EMBL	CDS	210317	210763	.	+	0	ID=cds-CAL34380.1;Parent=gene-Cj0225;Dbxref=EnsemblGenomes-Gn:Cj0225,EnsemblGenomes-Tr:CAL34380,GOA:Q0PBS9,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q0PBS9,NCBI_GP:CAL34380.1;Name=CAL34380.1;Note=Original (2000) note: Cj0225%2C probable acetyltransferase%2C len: 148 aa%3B some simlarity to STA_ECOLI streptothricin acetyltransferase (plasmid borne)(EC 2.3.-.-) (174 aa)%2C fasta scores%3B opt: 118 z-score: 186.2 E(): 0.0041%2C 27.3%25 identity in 110 aa overlap. No Hp match. Contains Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family%2C score 57.00%2C E-value 4.1e-13%3B~Updated (2006) note: Characterisation carried out within Escherichia coil%2C however%2C identity score was marginal. Putative kept within product function. Functional classification - Misc%3B~PMID:2157196;gbkey=CDS;inference=protein motif:Pfam:PF00583;locus_tag=Cj0225;product=putative acetyltransferase;protein_id=CAL34380.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	210458	210694	.	+	.	ID=id-Cj0225;Note=HMMPfam hit to PF00583%2C Acetyltransferase (GNAT) family%2C score 4.1e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF00583;locus_tag=Cj0225
gi|15791399|ref|NC_002163.1|	EMBL	gene	210767	211612	.	+	.	ID=gene-Cj0226;Name=argB;gbkey=Gene;gene=argB;gene_biotype=protein_coding;locus_tag=Cj0226
gi|15791399|ref|NC_002163.1|	EMBL	CDS	210767	211612	.	+	0	ID=cds-CAL34381.1;Parent=gene-Cj0226;Dbxref=EnsemblGenomes-Gn:Cj0226,EnsemblGenomes-Tr:CAL34381,GOA:Q9PIR8,InterPro:IPR001048,InterPro:IPR001057,InterPro:IPR004662,NCBI_GP:CAL34381.1;Name=CAL34381.1;Note=Original (2000) note: Cj0226%2C argB%2C probable acetylglutamate kinase%2C len: 281 aa%3B similar to many e.g. ARGB_PORPU acetylglutamate kinase (EC 2.7.2.8) (283 aa)%2Cfasta scores%3B opt: 784 z-score: 1169.3 E(): 0%2C 43.6%25 identity in 282 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00696 Amino acid kinase family was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Glutamate family%3B~PMID:10588044%2C PMID:2851495%2C PMID:12005432;gbkey=CDS;gene=argB;inference=protein motif:Pfam:PF00696;locus_tag=Cj0226;product=acetylglutamate kinase;protein_id=CAL34381.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	210842	211543	.	+	.	ID=id-Cj0226;Note=HMMPfam hit to PF00696%2C Amino acid kinase family%2Cscore 3.1e-51;gbkey=misc_feature;gene=argB;inference=protein motif:Pfam:PF00696;locus_tag=Cj0226
gi|15791399|ref|NC_002163.1|	EMBL	gene	211616	212803	.	+	.	ID=gene-Cj0227;Name=argD;gbkey=Gene;gene=argD;gene_biotype=protein_coding;locus_tag=Cj0227
gi|15791399|ref|NC_002163.1|	EMBL	CDS	211616	212803	.	+	0	ID=cds-CAL34382.1;Parent=gene-Cj0227;Dbxref=EnsemblGenomes-Gn:Cj0227,EnsemblGenomes-Tr:CAL34382,GOA:Q9PIR7,InterPro:IPR004636,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,PDB:3NX3,NCBI_GP:CAL34382.1;Name=CAL34382.1;Note=Original (2000) note: Cj0227%2C argD%2C probable acetylornithine aminotransferase%2C len: 395 aa%3B simlar to many e.g. ARGD_ECOLI acetylornithine aminotransferase (EC 2.6.1.11) (406 aa)%2C fasta scores%3B opt: 921 z-score: 1042.0 E(): 0%2C 36.6%25 identity in 385 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00202 aminotran_3%2CAminotransferases class-III pyridoxal-phosphate%2C score 378.20%2C E-value 5.1e-131%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Based on current literature%2C product function has been modified and additional EC number has been added. Putative kept within product function. Functional classification - Amino acid biosynthesis - Glutamate family%3B~PMID:10588044%2C PMID:10074354;gbkey=CDS;gene=argD;inference=protein motif:Pfam:PF00202;locus_tag=Cj0227;product=putative acetylornithine/succinyldiaminopimelate aminotransferase;protein_id=CAL34382.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	211643	212800	.	+	.	ID=id-Cj0227;Note=HMMPfam hit to PF00202%2C Aminotransferase class-III%2Cscore 4.3e-133;gbkey=misc_feature;gene=argD;inference=protein motif:Pfam:PF00202;locus_tag=Cj0227
gi|15791399|ref|NC_002163.1|	EMBL	gene	212822	213451	.	-	.	ID=gene-Cj0228c;Name=pcm;gbkey=Gene;gene=pcm;gene_biotype=protein_coding;locus_tag=Cj0228c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	212822	213451	.	-	0	ID=cds-CAL34383.1;Parent=gene-Cj0228c;Dbxref=EnsemblGenomes-Gn:Cj0228c,EnsemblGenomes-Tr:CAL34383,GOA:Q0PBS6,InterPro:IPR000682,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PBS6,NCBI_GP:CAL34383.1;Name=CAL34383.1;Note=Original (2000) note: Cj0228c%2C pcm%2C probable protein-L-isoaspartate O-methyltransferase%2C len: 209 aa PIMT_ECOLI protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) (207 aa)%2C fasta scores%3B opt: 463 z-score: 633.3 E(): 5.1e-28%2C 35.3%25 identity in 204 aa overlap. 53.8%25 identity to HP0363. Contains Pfam match to entry PF01135 PCMT%2C Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)%2C score 181.40%2C E-value 1.4e-50%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Protein translation and modification%3B~PMID:1860862;gbkey=CDS;gene=pcm;inference=protein motif:Pfam:PF01135;locus_tag=Cj0228c;product=protein-L-isoaspartate O-methyltransferase;protein_id=CAL34383.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	212825	213439	.	-	.	ID=id-Cj0228c;Note=HMMPfam hit to PF01135%2CProtein-L-isoaspartate(D-aspartate) O-methyl%2C score 1e-51;gbkey=misc_feature;gene=pcm;inference=protein motif:Pfam:PF01135;locus_tag=Cj0228c
gi|15791399|ref|NC_002163.1|	EMBL	gene	213540	214088	.	+	.	ID=gene-Cj0229;Name=Cj0229;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0229
gi|15791399|ref|NC_002163.1|	EMBL	CDS	213540	214088	.	+	0	ID=cds-CAL34384.1;Parent=gene-Cj0229;Dbxref=EnsemblGenomes-Gn:Cj0229,EnsemblGenomes-Tr:CAL34384,GOA:Q0PBS5,InterPro:IPR001451,InterPro:IPR011004,UniProtKB/TrEMBL:Q0PBS5,NCBI_GP:CAL34384.1;Name=CAL34384.1;Note=Original (2000) note: Cj0229%2C possible acetyltransferase%2C len: 182 aa%3B similar to e.g. CAIE_ECOLI carnitine operon protein caiE (203 aa)%2C fasta scores%3B opt: 251 z-score: 517.5 E(): 1.4e-21%2C 33.1%25 identity in 169 aa overlap. No Hp ortholog. Contains 3x Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%2C scores 16.60%2C E-value 0.0071%3B 9.10%2C E-value 0.97 and 24.70%2C E-value 3.7e-05%3B~Updated (2006) note: Some characterisation work within Escherichia coli%2C however%2C identity score was marginal. Putative kept within product function. Functional classification - Misc%3B~PMID:7815937;gbkey=CDS;inference=protein motif:Pfam:PF00132;locus_tag=Cj0229;product=putative acetyltransferase;protein_id=CAL34384.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	213582	213635	.	+	.	ID=id-Cj0229;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 7.6;gbkey=misc_feature;inference=protein motif:Pfam:PF00132;locus_tag=Cj0229
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	213681	213734	.	+	.	ID=id-Cj0229-2;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 1.1e+02;gbkey=misc_feature;inference=protein motif:Pfam:PF00132;locus_tag=Cj0229
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	213783	213836	.	+	.	ID=id-Cj0229-3;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 0.0059;gbkey=misc_feature;inference=protein motif:Pfam:PF00132;locus_tag=Cj0229
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	213837	213887	.	+	.	ID=id-Cj0229-4;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 21;gbkey=misc_feature;inference=protein motif:Pfam:PF00132;locus_tag=Cj0229
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	213888	213941	.	+	.	ID=id-Cj0229-5;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 8.1;gbkey=misc_feature;inference=protein motif:Pfam:PF00132;locus_tag=Cj0229
gi|15791399|ref|NC_002163.1|	EMBL	gene	214057	215430	.	-	.	ID=gene-Cj0230c;Name=Cj0230c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0230c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	214057	215430	.	-	0	ID=cds-CAL34385.1;Parent=gene-Cj0230c;Dbxref=EnsemblGenomes-Gn:Cj0230c,EnsemblGenomes-Tr:CAL34385,GOA:Q0PBS4,InterPro:IPR002638,InterPro:IPR006405,InterPro:IPR007229,UniProtKB/TrEMBL:Q0PBS4,NCBI_GP:CAL34385.1;Name=CAL34385.1;Note=Original (2000) note: Cj0230c%2C unknown%2C len: 457 aa%3B similar to hypothetical proteins e.g. TR:O51580 (EMBL:AE001165) Borrelia burgdorferi BB0635 (481 aa)%2Cfasta scores%3B opt: 1037 z-score: 1499.1 E(): 0%2C 41.1%25 identity in 479 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family was identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF04095;locus_tag=Cj0230c;product=putative transferase protein;protein_id=CAL34385.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	214336	215409	.	-	.	ID=id-Cj0230c;Note=HMMPfam hit to PF04095%2C Nicotinate phosphoribosyltransferase (NAPRTa%2C score 3.6e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF04095;locus_tag=Cj0230c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	214873	214905	.	-	.	ID=id-Cj0230c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0230c
gi|15791399|ref|NC_002163.1|	EMBL	gene	215417	216439	.	-	.	ID=gene-Cj0231c;Name=nrdB;gbkey=Gene;gene=nrdB;gene_biotype=protein_coding;locus_tag=Cj0231c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	215417	216439	.	-	0	ID=cds-CAL34386.1;Parent=gene-Cj0231c;Dbxref=EnsemblGenomes-Gn:Cj0231c,EnsemblGenomes-Tr:CAL34386,GOA:Q0PBS3,InterPro:IPR000358,InterPro:IPR009078,InterPro:IPR012348,InterPro:IPR026023,UniProtKB/TrEMBL:Q0PBS3,NCBI_GP:CAL34386.1;Name=CAL34386.1;Note=Original (2000) note: Cj0231c%2C nrdB%2C probable ribonucleoside-diphosphate reductase beta chain%2C len: 340 aa%3B similar to many e.g. RIR2_ECOLI ribonucleoside-diphosphate reductase 1 beta chain (EC 1.17.4.1) (375 aa)%2C fasta scores%3B opt: 223 z-score: 509.0 E(): 4.3e-21%2C 26.6%25 identity in 361 aa overlap. 58.2%25 identity to HP0364. Contains Pfam match to entry PF00268 ribonuc_red%2C Ribonucleotide reductases%2C score 126.50%2CE-value 8e-43%3B~Updated (2006) note: Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification -2'-deoxyribonucleotide biosynthesis%3B~PMID:6087316%2C PMID:3511029%2C PMID:9558317;gbkey=CDS;gene=nrdB;inference=protein motif:Pfam:PF00268;locus_tag=Cj0231c;product=ribonucleoside-diphosphate reductase beta chain;protein_id=CAL34386.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	215504	216388	.	-	.	ID=id-Cj0231c;Note=HMMPfam hit to PF00268%2C Ribonucleotide reductase%2Csmall chain%2C score 1.8e-30;gbkey=misc_feature;gene=nrdB;inference=protein motif:Pfam:PF00268;locus_tag=Cj0231c
gi|15791399|ref|NC_002163.1|	EMBL	gene	216453	216863	.	-	.	ID=gene-Cj0232c;Name=Cj0232c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0232c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	216453	216863	.	-	0	ID=cds-CAL34387.1;Parent=gene-Cj0232c;Dbxref=EnsemblGenomes-Gn:Cj0232c,EnsemblGenomes-Tr:CAL34387,InterPro:IPR010432,UniProtKB/TrEMBL:Q0PBS2,NCBI_GP:CAL34387.1;Name=CAL34387.1;Note=Original (2000) note: Cj0232c%2C probable integral membrane protein%2C len: 136 aa%3B 37.9%25 identity to HP1258 (called conserved hypothetical mitochondrial protein 4). Contains three possible transmembrane domains%3B~Updated (2006) note: Pfam domain PF06271 RDD family was identified within CDS. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates%2C hence the name of RDD family. This region contains two predicted transmembrane regions. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Pfam:PF06271;locus_tag=Cj0232c;product=putative integral membrane protein;protein_id=CAL34387.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	216516	216584	.	-	.	ID=id-Cj0232c;Note=3 probable transmembrane helices predicted for Cj0232c by TMHMM2.0 at aa 15-37%2C 42-64 and 94-116;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0232c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	216672	216740	.	-	.	ID=id-Cj0232c;Note=3 probable transmembrane helices predicted for Cj0232c by TMHMM2.0 at aa 15-37%2C 42-64 and 94-116;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0232c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	216753	216821	.	-	.	ID=id-Cj0232c;Note=3 probable transmembrane helices predicted for Cj0232c by TMHMM2.0 at aa 15-37%2C 42-64 and 94-116;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0232c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	216462	216845	.	-	.	ID=id-Cj0232c-2;Note=HMMPfam hit to PF06271%2C RDD family%2C score 1e-13;gbkey=misc_feature;inference=protein motif:Pfam:PF06271;locus_tag=Cj0232c
gi|15791399|ref|NC_002163.1|	EMBL	gene	216864	217472	.	-	.	ID=gene-Cj0233c;Name=pyrE;gbkey=Gene;gene=pyrE;gene_biotype=protein_coding;locus_tag=Cj0233c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	216864	217472	.	-	0	ID=cds-CAL34388.1;Parent=gene-Cj0233c;Dbxref=EnsemblGenomes-Gn:Cj0233c,EnsemblGenomes-Tr:CAL34388,GOA:Q9PIR1,InterPro:IPR000836,InterPro:IPR006273,InterPro:IPR023031,InterPro:IPR029057,NCBI_GP:CAL34388.1;Name=CAL34388.1;Note=Original (2000) note: Cj0233c%2C pyrE%2C possible orotate phosphoribosyltransferase%2C len: 202 aa%3B similar to e.g. PYRE_THETH orotate phosphoribosyltransferase (EC 2.4.2.10) (183 aa)%2C fasta scores%3B opt: 369 z-score: 372.7 E(): 1.7e-13%2C 33.9%25 identity in 192 aa overlap. 58.4%25 identity to HP1257. Contains PS00103 Purine/pyrimidine phosphoribosyl transferases signature and Pfam match to entry PF00156 Pribosyltran%2C Purine/pyrimidine phosphoribosyl transferases%2C score -4.80%2C E-value 0.0013%3B~Updated (2006) note: Characterised within Thermus thermophilus%2C however%2C identity score was marginal. Putative kept within product function. Functional classification - Pyrimidine ribonucleotide biosynthesis%3B~PMID:7635839;gbkey=CDS;gene=pyrE;inference=protein motif:Prosite:PS00103;locus_tag=Cj0233c;product=putative orotate phosphoribosyltransferase;protein_id=CAL34388.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	217017	217382	.	-	.	ID=id-Cj0233c;Note=HMMPfam hit to PF00156%2C Phosphoribosyl transferase domain%2C score 2.3e-22;gbkey=misc_feature;gene=pyrE;inference=protein motif:Pfam:PF00156;locus_tag=Cj0233c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	217110	217148	.	-	.	ID=id-Cj0233c-2;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature;gbkey=misc_feature;gene=pyrE;inference=protein motif:Prosite:PS00103;locus_tag=Cj0233c
gi|15791399|ref|NC_002163.1|	EMBL	gene	217475	218038	.	-	.	ID=gene-Cj0234c;Name=frr;gbkey=Gene;gene=frr;gene_biotype=protein_coding;locus_tag=Cj0234c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	217475	218038	.	-	0	ID=cds-CAL34389.1;Parent=gene-Cj0234c;Dbxref=EnsemblGenomes-Gn:Cj0234c,EnsemblGenomes-Tr:CAL34389,GOA:Q9PIR0,InterPro:IPR002661,InterPro:IPR023584,NCBI_GP:CAL34389.1;Name=CAL34389.1;Note=Original (2000) note: Cj0234c%2C frr%2C probable ribosome recycling factor%2C len: 187 aa%3B highly similar to many e.g. RRF_ECOLI ribosome recycling factor (ribosome releasing factor) (185 aa)%2C fasta scores%3B opt: 514 z-score: 821.2 E(): 0 40.2%25 identity in 184 aa overlap. 64.3%25 identity to HP1256%3B~Updated (2006) note: Pfam domain PF01765 Ribosome recycling factor was identified within CDS. Further support given to product functionality. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Protein translation and modification%3B~PMID:2684966%2C PMID:8183897;gbkey=CDS;gene=frr;inference=protein motif:Pfam:PF01765;locus_tag=Cj0234c;product=ribosome recycling factor;protein_id=CAL34389.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	217484	217978	.	-	.	ID=id-Cj0234c;Note=HMMPfam hit to PF01765%2C Ribosome recycling factor%2Cscore 4.9e-88;gbkey=misc_feature;gene=frr;inference=protein motif:Pfam:PF01765;locus_tag=Cj0234c
gi|15791399|ref|NC_002163.1|	EMBL	gene	218048	218419	.	-	.	ID=gene-Cj0235c;Name=secG;gbkey=Gene;gene=secG;gene_biotype=protein_coding;locus_tag=Cj0235c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	218048	218419	.	-	0	ID=cds-CAL34390.1;Parent=gene-Cj0235c;Dbxref=EnsemblGenomes-Gn:Cj0235c,EnsemblGenomes-Tr:CAL34390,GOA:Q0PBR9,InterPro:IPR004692,UniProtKB/TrEMBL:Q0PBR9,NCBI_GP:CAL34390.1;Name=CAL34390.1;Note=Original (2000) note: Cj0235c%2C secG%2C possible protein-export membrane protein%2C len: 123 aa%3B similar to e.g. SECG_PSESY protein-export membrane protein secG (126 aa)%2C fasta scores%3B opt: 157 z-score: 210.5 E(): 0.00018%2C25.2%25 identity in 119 aa overlap. 48.8%25 identity to HP1255%3B~Updated (2006) note: Pfam domain PF03840 Preprotein translocase SecG subunit was identified within CDS. Also%2Ctwo probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores have been carried out yet. Putative kept within product function. Functional classification - Protein and peptide secretion;gbkey=CDS;gene=secG;inference=protein motif:TMHMM:2.0;locus_tag=Cj0235c;product=putative protein-export membrane protein;protein_id=CAL34390.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	218207	218275	.	-	.	ID=id-Cj0235c;Note=2 probable transmembrane helices predicted for Cj0235c by TMHMM2.0 at aa 5-22 and 49-71;gbkey=misc_feature;gene=secG;inference=protein motif:TMHMM:2.0;locus_tag=Cj0235c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	218354	218407	.	-	.	ID=id-Cj0235c;Note=2 probable transmembrane helices predicted for Cj0235c by TMHMM2.0 at aa 5-22 and 49-71;gbkey=misc_feature;gene=secG;inference=protein motif:TMHMM:2.0;locus_tag=Cj0235c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	218201	218416	.	-	.	ID=id-Cj0235c-2;Note=HMMPfam hit to PF03840%2C Preprotein translocase SecG subunit%2C score 2.8e-24;gbkey=misc_feature;gene=secG;inference=protein motif:Pfam:PF03840;locus_tag=Cj0235c
gi|15791399|ref|NC_002163.1|	EMBL	gene	218523	219218	.	-	.	ID=gene-Cj0236c;Name=Cj0236c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0236c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	218523	219218	.	-	0	ID=cds-CAL34391.1;Parent=gene-Cj0236c;Dbxref=EnsemblGenomes-Gn:Cj0236c,EnsemblGenomes-Tr:CAL34391,GOA:Q9PIQ8,InterPro:IPR006214,NCBI_GP:CAL34391.1;Name=CAL34391.1;Note=Original (2000) note: Cj0236c%2C probable integral membrane protein%2C len: 231 aa similar to members of the UPF0005 family e.g. YCCA_PSEAE (222 aa)%2C fasta scores%3B opt: 377 z-score: 628.9 E(): 8.9e-28%2C 37.7%25 identity in 207 aa overlap. 49.1%25 identity to HP0920. Contains Pfam match to entry PF01027 UPF0005%2C Uncharacterized protein family%2C score 128.30%2C E-value 1.4e-34%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0236c;product=putative integral membrane protein;protein_id=CAL34391.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	218649	218708	.	-	.	ID=id-Cj0236c;Note=6 probable transmembrane helices predicted for Cj0236c by TMHMM2.0 at aa 32-54%2C 59-76%2C 89-111%2C 116-138%2C145-167 and 171-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0236c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	218718	218786	.	-	.	ID=id-Cj0236c;Note=6 probable transmembrane helices predicted for Cj0236c by TMHMM2.0 at aa 32-54%2C 59-76%2C 89-111%2C 116-138%2C145-167 and 171-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0236c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	218805	218873	.	-	.	ID=id-Cj0236c;Note=6 probable transmembrane helices predicted for Cj0236c by TMHMM2.0 at aa 32-54%2C 59-76%2C 89-111%2C 116-138%2C145-167 and 171-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0236c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	218886	218954	.	-	.	ID=id-Cj0236c;Note=6 probable transmembrane helices predicted for Cj0236c by TMHMM2.0 at aa 32-54%2C 59-76%2C 89-111%2C 116-138%2C145-167 and 171-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0236c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	218991	219044	.	-	.	ID=id-Cj0236c;Note=6 probable transmembrane helices predicted for Cj0236c by TMHMM2.0 at aa 32-54%2C 59-76%2C 89-111%2C 116-138%2C145-167 and 171-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0236c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	219057	219125	.	-	.	ID=id-Cj0236c;Note=6 probable transmembrane helices predicted for Cj0236c by TMHMM2.0 at aa 32-54%2C 59-76%2C 89-111%2C 116-138%2C145-167 and 171-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0236c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	218532	219167	.	-	.	ID=id-Cj0236c-2;Note=HMMPfam hit to PF01027%2C Uncharacterised protein family UPF0005%2C score 2.5e-36;gbkey=misc_feature;inference=protein motif:Pfam:PF01027;locus_tag=Cj0236c
gi|15791399|ref|NC_002163.1|	EMBL	gene	219378	220013	.	+	.	ID=gene-Cj0237;Name=cynT;gbkey=Gene;gene=cynT;gene_biotype=protein_coding;locus_tag=Cj0237
gi|15791399|ref|NC_002163.1|	EMBL	CDS	219378	220013	.	+	0	ID=cds-CAL34392.1;Parent=gene-Cj0237;Dbxref=EnsemblGenomes-Gn:Cj0237,EnsemblGenomes-Tr:CAL34392,GOA:Q0PBR7,InterPro:IPR001765,InterPro:IPR015892,UniProtKB/TrEMBL:Q0PBR7,NCBI_GP:CAL34392.1;Name=CAL34392.1;Note=Original (2000) note: Cj0237%2C cynT%2C probable carbonic anyhydrase%2C len: 211 aa%3B similar to e.g. CYNT_ECOLI carbonic anhydrase (EC 4.2.1.1) (219 aa)%2C fasta scores%3B opt: 541 z-score: 776.7 E(): 0%2C 41.2%25 identity in 204 aa overlap. 43.5%25 identity to HP0004. Contains PS00704 and PS00705 Prokaryotic-type carbonic anhydrases signatures 1 and 2%2C and Pfam match to entry PF00484 Pro_CA%2C Prokaryotic-type carbonic anhydrases%2C score 208.10%2C E-value 2.7e-59%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Central intermediary metabolism - General%3B~PMID:1740425%2C PMID:14563877;gbkey=CDS;gene=cynT;inference=protein motif:Prosite:PS00705;locus_tag=Cj0237;product=carbonic anyhydrase;protein_id=CAL34392.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	219456	219965	.	+	.	ID=id-Cj0237;Note=HMMPfam hit to PF00484%2C Carbonic anhydrase%2C score 1.9e-45;gbkey=misc_feature;gene=cynT;inference=protein motif:Pfam:PF00484;locus_tag=Cj0237
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	219492	219515	.	+	.	ID=id-Cj0237-2;Note=PS00704 Prokaryotic-type carbonic anhydrases signature 1;gbkey=misc_feature;gene=cynT;inference=protein motif:Prosite:PS00704;locus_tag=Cj0237
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	219627	219689	.	+	.	ID=id-Cj0237-3;Note=PS00705 Prokaryotic-type carbonic anhydrases signature 2;gbkey=misc_feature;gene=cynT;inference=protein motif:Prosite:PS00705;locus_tag=Cj0237
gi|15791399|ref|NC_002163.1|	EMBL	gene	220010	221893	.	+	.	ID=gene-Cj0238;Name=Cj0238;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0238
gi|15791399|ref|NC_002163.1|	EMBL	CDS	220010	221893	.	+	0	ID=cds-CAL34393.1;Parent=gene-Cj0238;Dbxref=EnsemblGenomes-Gn:Cj0238,EnsemblGenomes-Tr:CAL34393,GOA:Q0PBR6,InterPro:IPR006685,InterPro:IPR010920,InterPro:IPR011014,InterPro:IPR011066,UniProtKB/TrEMBL:Q0PBR6,NCBI_GP:CAL34393.1;Name=CAL34393.1;Note=Original (2000) note: Cj0238%2C probable integral membrane protein%2C len: 627 aa%3B similar in C-terminus to many hypothetical proteins%2C e.g. YB43_METJA MJ1143 (361 aa)%2C fasta scores%3B opt: 413 z-score: 535.7 E(): 1.4e-22%2C23.9%25 identity in 372 aa overlap. 36.3%25 identity in 608 aa overlap to HP0415. Contains Pfam match to entry PF00924 UPF0003%2C Uncharacterized protein family UPF0003%2C score 145.90%2C E-value 6.9e-40%3B~Updated (2006) note: Pfam domain PF00924 Mechanosensitive ion channel was identified within CDS. Product modified to more specific family member due to motif match. Paper identified linking protein to glycoprotein. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification - Transport/binding proteins -Other;gbkey=CDS;inference=protein motif:Pfam:PF00924;locus_tag=Cj0238;product=putative mechanosensitive ion channel family protein;protein_id=CAL34393.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	220721	220789	.	+	.	ID=id-Cj0238;Note=6 probable transmembrane helices predicted for Cj0238 by TMHMM2.0 at aa 238-260%2C 265-279%2C 300-322%2C332-354%2C 366-388 and 392-411;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0238;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	220802	220846	.	+	.	ID=id-Cj0238;Note=6 probable transmembrane helices predicted for Cj0238 by TMHMM2.0 at aa 238-260%2C 265-279%2C 300-322%2C332-354%2C 366-388 and 392-411;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0238;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	220907	220975	.	+	.	ID=id-Cj0238;Note=6 probable transmembrane helices predicted for Cj0238 by TMHMM2.0 at aa 238-260%2C 265-279%2C 300-322%2C332-354%2C 366-388 and 392-411;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0238;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	221003	221071	.	+	.	ID=id-Cj0238;Note=6 probable transmembrane helices predicted for Cj0238 by TMHMM2.0 at aa 238-260%2C 265-279%2C 300-322%2C332-354%2C 366-388 and 392-411;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0238;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	221105	221173	.	+	.	ID=id-Cj0238;Note=6 probable transmembrane helices predicted for Cj0238 by TMHMM2.0 at aa 238-260%2C 265-279%2C 300-322%2C332-354%2C 366-388 and 392-411;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0238;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	221183	221242	.	+	.	ID=id-Cj0238;Note=6 probable transmembrane helices predicted for Cj0238 by TMHMM2.0 at aa 238-260%2C 265-279%2C 300-322%2C332-354%2C 366-388 and 392-411;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0238;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	221123	221824	.	+	.	ID=id-Cj0238-2;Note=HMMPfam hit to PF00924%2C Mechanosensitive ion channel%2C score 2e-68;gbkey=misc_feature;inference=protein motif:Pfam:PF00924;locus_tag=Cj0238
gi|15791399|ref|NC_002163.1|	EMBL	gene	221916	222887	.	-	.	ID=gene-Cj0239c;Name=Cj0239c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0239c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	221916	222887	.	-	0	ID=cds-CAL34394.1;Parent=gene-Cj0239c;Dbxref=EnsemblGenomes-Gn:Cj0239c,EnsemblGenomes-Tr:CAL34394,GOA:Q0PBR5,InterPro:IPR001075,InterPro:IPR002871,InterPro:IPR007419,InterPro:IPR016217,UniProtKB/TrEMBL:Q0PBR5,NCBI_GP:CAL34394.1;Name=CAL34394.1;Note=Original (2000) note: Cj0239c%2C nifU protein homolog%2C len: 323 aa%3B similar to many e.g. NIFU_AZOVI nifU protein (312 aa)%2C fasta scores%3B opt: 627 z-score: 910.4 E(): 0%2C 37.0%25 identity in 330 aa overlap. 68.8%25 identity to HP0221. Also similar in C-terminus to Cj1639 (38.2%25 identity in 76 aa overlap). Contains Pfam match to entry PF01106 NifU-like%2C NifU-like domain%2C score 100.40%2C E-value 3.5e-26%3B~Updated (2006) note: Pfam domains PF01592 NifU-like N terminal domain and PF04324 which is a BFD-like [2Fe-2S] binding domain identified within CDS. Further support given to product function. Functional classification -Conserved hypothetical proteins%3B~PMID:7947754%2C PMID:10819462;gbkey=CDS;inference=protein motif:Pfam:PF04324;locus_tag=Cj0239c;product=NifU protein homolog;protein_id=CAL34394.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	221919	222140	.	-	.	ID=id-Cj0239c;Note=HMMPfam hit to PF01106%2C NifU-like domain%2C score 2.1e-27;gbkey=misc_feature;inference=protein motif:Pfam:PF01106;locus_tag=Cj0239c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	222255	222416	.	-	.	ID=id-Cj0239c-2;Note=HMMPfam hit to PF04324%2C BFD-like [2Fe-2S] binding domain%2C score 5.7e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF04324;locus_tag=Cj0239c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	222429	222848	.	-	.	ID=id-Cj0239c-3;Note=HMMPfam hit to PF01592%2C NifU-like N terminal domain%2C score 2.9e-64;gbkey=misc_feature;inference=protein motif:Pfam:PF01592;locus_tag=Cj0239c
gi|15791399|ref|NC_002163.1|	EMBL	gene	222897	224078	.	-	.	ID=gene-Cj0240c;Name=iscS;gbkey=Gene;gene=iscS;gene_biotype=protein_coding;locus_tag=Cj0240c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	222897	224078	.	-	0	ID=cds-CAL34395.1;Parent=gene-Cj0240c;Dbxref=EnsemblGenomes-Gn:Cj0240c,EnsemblGenomes-Tr:CAL34395,GOA:Q0PBR4,InterPro:IPR000192,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR016454,InterPro:IPR017773,InterPro:IPR020578,UniProtKB/TrEMBL:Q0PBR4,NCBI_GP:CAL34395.1;Name=CAL34395.1;Note=Original (2000) note: Cj0240c%2C probable aminotransferase (nifS protein homolog)%2C len: 393 aa%3B similar to many e.g. NIFS_KLEPN nifS protein (397 aa)%2Cfasta scores%3B opt: 1067 z-score: 1533.6 E(): 0%2C 47.0%25 identity in 383 aa overlap. 62.8%25 identity to HP0220. Contains PS00132 Zinc carboxypeptidases%2C zinc-binding region 1 signature%2C PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site%2C and Pfam match to entry PF00266 aminotran_5%2C Aminotransferases class-V%2Cscore 358.80%2C E-value 5.9e-104%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Product modified to more specific family member based on characterisation papers. Putative not added to product function. Functional classification - Misc%3B~PMID:10908675%2C PMID:10781607%2C PMID:12860127%2CPMID:3040672%2C PMID:8464885;gbkey=CDS;gene=iscS;inference=protein motif:Prosite:PS00595;locus_tag=Cj0240c;product=cysteine desulfurase (NifS protein homolog);protein_id=CAL34395.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	222978	224042	.	-	.	ID=id-Cj0240c;Note=HMMPfam hit to PF00266%2C Aminotransferase class-V%2Cscore 3.2e-105;gbkey=misc_feature;gene=iscS;inference=protein motif:Pfam:PF00266;locus_tag=Cj0240c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	223101	223133	.	-	.	ID=id-Cj0240c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=iscS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0240c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	223359	223427	.	-	.	ID=id-Cj0240c-3;Note=PS00132 Zinc carboxypeptidases%2C zinc-binding region 1 signature;gbkey=misc_feature;gene=iscS;inference=protein motif:Prosite:PS00132;locus_tag=Cj0240c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	223437	223496	.	-	.	ID=id-Cj0240c-4;Note=PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=iscS;inference=protein motif:Prosite:PS00595;locus_tag=Cj0240c
gi|15791399|ref|NC_002163.1|	EMBL	gene	224256	224657	.	-	.	ID=gene-Cj0241c;Name=Cj0241c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0241c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	224256	224657	.	-	0	ID=cds-CAL34396.1;Parent=gene-Cj0241c;Dbxref=EnsemblGenomes-Gn:Cj0241c,EnsemblGenomes-Tr:CAL34396,GOA:Q9PIQ3,InterPro:IPR012312,InterPro:IPR012827,InterPro:IPR016131,InterPro:IPR023504,NCBI_GP:CAL34396.1;Name=CAL34396.1;Note=Original (2000) note: Cj0241c%2C possible iron-binding protein%2C len: 133 aa%3B Weak similarity to members of the eukaryotic iron-binding hemerythrin family%2Ce.g. HEMT_LINUN hemerythrin alpha chain (117 aa)%2C fasta scores%3B opt: 93 z-score: 135.4 E(): 3.1%2C 27.3%25 identity in 77 aa overlap. Note that all of the iron-binding residues are conserved. No Hp match. Also similar to Cj1224 (34.7%25 identity in 118 aa overlap)%2C Cj0072c (40.5%25 identity in 79 aa overlap) and Cj0045c (30.9%25 identity in 123 aa overlap)%3B~Updated (2006) note: Pfam domain PF01814 Hemerythrin HHE cation binding domain identified within CDS. No specific characterisation with acceptable identity score has been carried out yet. Thus%2C putative kept within product function. Functional classification -Transport/binding proteins - Cations;gbkey=CDS;inference=protein motif:Pfam:PF01814;locus_tag=Cj0241c;product=putative iron-binding protein;protein_id=CAL34396.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	224280	224447	.	-	.	ID=id-Cj0241c;Note=HMMPfam hit to PF01814%2C Hemerythrin HHE cation binding domain%2C score 0.0029;gbkey=misc_feature;inference=protein motif:Pfam:PF01814;locus_tag=Cj0241c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	224457	224627	.	-	.	ID=id-Cj0241c-2;Note=HMMPfam hit to PF01814%2C Hemerythrin HHE cation binding domain%2C score 0.0079;gbkey=misc_feature;inference=protein motif:Pfam:PF01814;locus_tag=Cj0241c
gi|15791399|ref|NC_002163.1|	EMBL	gene	224794	225960	.	-	.	ID=gene-Cj0243c;Name=Cj0243c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0243c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	224794	225960	.	-	0	ID=cds-CAL34397.1;Parent=gene-Cj0243c;Dbxref=EnsemblGenomes-Gn:Cj0243c,EnsemblGenomes-Tr:CAL34397,UniProtKB/TrEMBL:Q0PBR2,NCBI_GP:CAL34397.1;Name=CAL34397.1;Note=Original (2000) note: Cj0243c%2C unknown%2C len: 388 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0243c;product=hypothetical protein Cj0243c;protein_id=CAL34397.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	226116	226307	.	+	.	ID=gene-Cj0244;Name=rpmI;gbkey=Gene;gene=rpmI;gene_biotype=protein_coding;locus_tag=Cj0244
gi|15791399|ref|NC_002163.1|	EMBL	CDS	226116	226307	.	+	0	ID=cds-CAL34398.1;Parent=gene-Cj0244;Dbxref=EnsemblGenomes-Gn:Cj0244,EnsemblGenomes-Tr:CAL34398,GOA:Q9PIQ1,InterPro:IPR001706,InterPro:IPR018265,InterPro:IPR021137,NCBI_GP:CAL34398.1;Name=CAL34398.1;Note=Original (2000) note: Cj0244%2C rpmI%2C 50s ribosomal protein L35%2C len: 63 aa%3B similar to many e.g. RL35_ECOLI 50s ribosomal protein L35 (64 aa)%2C fasta scores%3B opt: 133 z-score: 282.3 E(): 1.8e-08. 45.6%25 identity in 57 aa overlap. 60.7%25 identity to HP0125%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:16272117;gbkey=CDS;gene=rpmI;locus_tag=Cj0244;product=50s ribosomal protein L35;protein_id=CAL34398.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	226125	226298	.	+	.	ID=id-Cj0244;Note=HMMPfam hit to PF01632%2C Ribosomal protein L35%2Cscore 4.9e-18;gbkey=misc_feature;gene=rpmI;inference=protein motif:Pfam:PF01632;locus_tag=Cj0244
gi|15791399|ref|NC_002163.1|	EMBL	gene	226401	226754	.	+	.	ID=gene-Cj0245;Name=rplT;gbkey=Gene;gene=rplT;gene_biotype=protein_coding;locus_tag=Cj0245
gi|15791399|ref|NC_002163.1|	EMBL	CDS	226401	226754	.	+	0	ID=cds-CAL34399.1;Parent=gene-Cj0245;Dbxref=EnsemblGenomes-Gn:Cj0245,EnsemblGenomes-Tr:CAL34399,GOA:Q9PIQ0,InterPro:IPR005813,NCBI_GP:CAL34399.1;Name=CAL34399.1;Note=Original (2000) note: Cj0245%2C rplT%2C 50S ribosomal protein L20%2C len: 117 aa%3B similar to many e.g. RL20_ECOLI 50S ribosomal protein L20 (117 aa)%2C fasta scores%3B opt: 447 z-score: 836.3 E(): 0%2C 58.6%25 identity in 116 aa overlap%3B 74.8%25 identity to HP0126. Contains PS00937 Ribosomal protein L20 signature and Pfam match to entry PF00453 L20%2CRibosomal protein L20%2C score 178.20%2C E-value 1.3e-55%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:381019;gbkey=CDS;gene=rplT;inference=protein motif:Prosite:PS00937;locus_tag=Cj0245;product=50S ribosomal protein L20;protein_id=CAL34399.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	226404	226727	.	+	.	ID=id-Cj0245;Note=HMMPfam hit to PF00453%2C Ribosomal protein L20%2Cscore 4.5e-51;gbkey=misc_feature;gene=rplT;inference=protein motif:Pfam:PF00453;locus_tag=Cj0245
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	226560	226610	.	+	.	ID=id-Cj0245-2;Note=PS00937 Ribosomal protein L20 signature;gbkey=misc_feature;gene=rplT;inference=protein motif:Prosite:PS00937;locus_tag=Cj0245
gi|15791399|ref|NC_002163.1|	EMBL	gene	226807	227934	.	-	.	ID=gene-Cj0246c;Name=Cj0246c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0246c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	226807	227934	.	-	0	ID=cds-CAL34400.1;Parent=gene-Cj0246c;Dbxref=EnsemblGenomes-Gn:Cj0246c,EnsemblGenomes-Tr:CAL34400,GOA:Q0PBQ9,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR019494,UniProtKB/TrEMBL:Q0PBQ9,NCBI_GP:CAL34400.1;Name=CAL34400.1;Note=Original (2000) note: Cj0246c%2C probable MCP-domain signal transduction protein%2C len: 375 aa%3B similar in C-terminus to many MCP-domain containing proteins e.g. MCPA_BACSU methyl-accepting chemotaxis protein mcpA (661 aa)%2C fasta scores%3B opt: 257 z-score: 408.0 E(): 1.8e-15%2C33.2%25 identity in 205 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00015 MCPsignal%2C Methyl-accepting chemotaxis protein (MCP) signaling domain%2C score 93.20%2CE-value 3.9e-25%3B~Updated (2006) note: Characterisation within Bacillus subtilis%2C however%2C identity score was marginal. Putative kept within product function. Functional classification - Signal transduction%3B~PMID:8188684;gbkey=CDS;inference=protein motif:Pfam:PF00015;locus_tag=Cj0246c;product=putative MCP-domain signal transduction protein;protein_id=CAL34400.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	226813	227370	.	-	.	ID=id-Cj0246c;Note=HMMPfam hit to PF00015%2C Methyl-accepting chemotaxis protein (MCP) s%2C score 4.2e-09;gbkey=misc_feature;inference=protein motif:Pfam:PF00015;locus_tag=Cj0246c
gi|15791399|ref|NC_002163.1|	EMBL	gene	227910	228443	.	-	.	ID=gene-Cj0247c;Name=Cj0247c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0247c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	227910	228443	.	-	0	ID=cds-CAL34401.1;Parent=gene-Cj0247c;Dbxref=EnsemblGenomes-Gn:Cj0247c,EnsemblGenomes-Tr:CAL34401,InterPro:IPR013702,UniProtKB/TrEMBL:Q0PBQ8,NCBI_GP:CAL34401.1;Name=CAL34401.1;Note=Original (2000) note: Cj0247c%2C unknown%2C len: 177 aa%3B no Hp match%3B~Updated (2006) note: Similar to proteins from other bacteria. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0247c;product=hypothetical protein Cj0247c;protein_id=CAL34401.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	228946	229803	.	+	.	ID=gene-Cj0248;Name=Cj0248;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0248
gi|15791399|ref|NC_002163.1|	EMBL	CDS	228946	229803	.	+	0	ID=cds-CAL34402.1;Parent=gene-Cj0248;Dbxref=EnsemblGenomes-Gn:Cj0248,EnsemblGenomes-Tr:CAL34402,InterPro:IPR013976,PDB:1VQR,UniProtKB/TrEMBL:Q0PBQ7,NCBI_GP:CAL34402.1;Name=CAL34402.1;Note=Original (2000) note: Cj0248%2C unknown%2C len: 285 aa%3B no Hp match%3B~Updated (2006) note: Similar to proteins from other bacteria. Literature search identified papers giving structural characterisation and clues to product function. Currently unknown function but may be some kind of hydrolase or signal-transduction protein. Cj0248 has been implicated as a virulence factor and has been shown to play a role in motility. Functional classification -Unknown%3B~PMID:16287129%2C PMID:15066034%2C PMID:11298288;gbkey=CDS;locus_tag=Cj0248;product=hypothetical protein Cj0248;protein_id=CAL34402.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	229831	230310	.	+	.	ID=gene-Cj0249;Name=Cj0249;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0249
gi|15791399|ref|NC_002163.1|	EMBL	CDS	229831	230310	.	+	0	ID=cds-CAL34403.1;Parent=gene-Cj0249;Dbxref=EnsemblGenomes-Gn:Cj0249,EnsemblGenomes-Tr:CAL34403,UniProtKB/TrEMBL:Q0PBQ6,NCBI_GP:CAL34403.1;Name=CAL34403.1;Note=Original (2000) note: Cj0249%2C unknown%2C len: 159 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0249;product=hypothetical protein Cj0249;protein_id=CAL34403.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	230279	231589	.	-	.	ID=gene-Cj0250c;Name=Cj0250c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0250c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	230279	231589	.	-	0	ID=cds-CAL34404.1;Parent=gene-Cj0250c;Dbxref=EnsemblGenomes-Gn:Cj0250c,EnsemblGenomes-Tr:CAL34404,GOA:Q0PBQ5,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0PBQ5,NCBI_GP:CAL34404.1;Name=CAL34404.1;Note=Original (2000) note: Cj0250c%2C probable transmembrane transport protein%2C len: 436 aa%3B similar to many members of the sugar transport protein family%2C e.g. PROP_ECOLI proline/betaine transporter (500 aa)%2C fasta scores%3B opt: 602 z-score: 791.3 E(): 0%2C 31.7%25 identity in 394 aa overlapCIT1_SALTY citrate-proton symport (citrate transporter) (434 aa)%2C fasta scores%3B opt: 580 z-score: 734.9 E(): 0%2C 28.0%25 identity in 396 aa overlap. 50.9%25 identity to HP0936. Contains Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporters%2C score 93.10%2CE-value 5.5e-24%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily was identified within CDS in addition to previous PF0083. Prosite domain PS50850 MFS%2CMajor facilitator superfamily was also identified. Also%2Ctwelve probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member due to motif match. Putative kept within product function. Functional classification - Transport/binding proteins -Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;product=putative MFS (Major Facilitator Superfamily) transport protein;protein_id=CAL34404.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	230309	230377	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	230420	230488	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	230522	230590	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	230618	230686	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	230699	230767	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	230810	230878	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	230966	231034	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	231071	231139	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	231200	231268	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	231281	231340	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	231359	231427	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	231485	231553	.	-	.	ID=id-Cj0250c;Note=12 probable transmembrane helices predicted for Cj0250c by TMHMM2.0 at aa 13-35%2C 55-77%2C 84-103%2C 108-130%2C151-173%2C 186-208%2C 238-260%2C 275-297%2C 302-324%2C 334-356%2C368-390 and 405-427;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0250c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	230288	231556	.	-	.	ID=id-Cj0250c-2;Note=HMMPfam hit to PF00083%2C Sugar (and other) transporter%2C score 4.5e-24;gbkey=misc_feature;inference=protein motif:Pfam:PF00083;locus_tag=Cj0250c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	230426	231508	.	-	.	ID=id-Cj0250c-3;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 3.4e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj0250c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	230834	230866	.	-	.	ID=id-Cj0250c-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0250c
gi|15791399|ref|NC_002163.1|	EMBL	gene	231592	231747	.	-	.	ID=gene-Cj0251c;Name=Cj0251c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0251c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	231592	231747	.	-	0	ID=cds-CAL34405.1;Parent=gene-Cj0251c;Dbxref=EnsemblGenomes-Gn:Cj0251c,EnsemblGenomes-Tr:CAL34405,UniProtKB/TrEMBL:Q0PBQ4,NCBI_GP:CAL34405.1;Name=CAL34405.1;Note=Original (2000) note: Cj0251c%2C highly acidic protein%2C len: 51 aa%3B 47.9%25 identity to HP0756. Functional classification - Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0251c;product=highly acidic protein;protein_id=CAL34405.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	231840	232313	.	+	.	ID=gene-Cj0252;Name=moaC;gbkey=Gene;gene=moaC;gene_biotype=protein_coding;locus_tag=Cj0252
gi|15791399|ref|NC_002163.1|	EMBL	CDS	231840	232313	.	+	0	ID=cds-CAL34406.1;Parent=gene-Cj0252;Dbxref=EnsemblGenomes-Gn:Cj0252,EnsemblGenomes-Tr:CAL34406,GOA:Q9PIP3,InterPro:IPR002820,InterPro:IPR023045,InterPro:IPR023046,NCBI_GP:CAL34406.1;Name=CAL34406.1;Note=Original (2000) note: Cj0252%2C moaC%2C probable molybdenum cofactor biosynthesis protein C%2C len: 157 aa%3B simlar to many e.g. MOAC_ECOLI molybdenum cofactor biosynthesis protein C. (160 aa)%2C fasta scores%3B opt: 401 z-score: 741.9 E(): 0%2C 43.8%25 identity in 153 aa overlap. 64.3%25 identity to HP0798%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Molybdopterin%3B~PMID:10903949%2C PMID:8361352;gbkey=CDS;gene=moaC;locus_tag=Cj0252;product=molybdenum cofactor biosynthesis protein C;protein_id=CAL34406.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	231879	232286	.	+	.	ID=id-Cj0252;Note=HMMPfam hit to PF01967%2C MoaC family%2C score 6.3e-78;gbkey=misc_feature;gene=moaC;inference=protein motif:Pfam:PF01967;locus_tag=Cj0252
gi|15791399|ref|NC_002163.1|	EMBL	gene	232291	232554	.	+	.	ID=gene-Cj0253;Name=Cj0253;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0253
gi|15791399|ref|NC_002163.1|	EMBL	CDS	232291	232554	.	+	0	ID=cds-CAL34407.1;Parent=gene-Cj0253;Dbxref=EnsemblGenomes-Gn:Cj0253,EnsemblGenomes-Tr:CAL34407,InterPro:IPR007454,InterPro:IPR027471,NCBI_GP:CAL34407.1;Name=CAL34407.1;Note=Original (2000) note: Cj0253%2C unknown%2C len: 87 aa%3B 33.8%25 identity to HP0495. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0253;product=hypothetical protein Cj0253;protein_id=CAL34407.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	232544	233704	.	+	.	ID=gene-Cj0254;Name=Cj0254;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0254
gi|15791399|ref|NC_002163.1|	EMBL	CDS	232544	233704	.	+	0	ID=cds-CAL34408.1;Parent=gene-Cj0254;Dbxref=EnsemblGenomes-Gn:Cj0254,EnsemblGenomes-Tr:CAL34408,UniProtKB/TrEMBL:Q0PBQ1,NCBI_GP:CAL34408.1;Name=CAL34408.1;Note=Original (2000) note: Cj0254%2C unknown%2C len: 386 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0254;product=hypothetical protein Cj0254;protein_id=CAL34408.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	233723	234481	.	-	.	ID=gene-Cj0255c;Name=exoA;gbkey=Gene;gene=exoA;gene_biotype=protein_coding;locus_tag=Cj0255c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	233723	234481	.	-	0	ID=cds-CAL34409.1;Parent=gene-Cj0255c;Dbxref=EnsemblGenomes-Gn:Cj0255c,EnsemblGenomes-Tr:CAL34409,GOA:Q0PBQ0,InterPro:IPR004808,InterPro:IPR005135,UniProtKB/TrEMBL:Q0PBQ0,NCBI_GP:CAL34409.1;Name=CAL34409.1;Note=Original (2000) note: Cj0255c%2C probable exodeoxyribonuclease%2C len: 252 aa%3B similar to many e.g. EXOA_BACSU exodeoxyribonuclease (EC 3.1.11.2)(252 aa)%2Cfasta scores%3B opt: 676 z-score: 868.1 E(): 0%2C 40.5%25 identity in 259 aa overlap. 41.1%25 identity to HP1526. Contains Pfam match to entry PF01260 AP_endonulease1%2C AP endonucleases family 1%2C score 282.10%2C E-value 7.3e-81%3B~Updated (2006) note: Pfam domain PF03372%2CEndonuclease/Exonuclease/phosphatase family identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:10540738;gbkey=CDS;gene=exoA;inference=protein motif:Pfam:PF03372;locus_tag=Cj0255c;product=exodeoxyribonuclease;protein_id=CAL34409.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	233732	234481	.	-	.	ID=id-Cj0255c;Note=HMMPfam hit to PF03372%2CEndonuclease/Exonuclease/phosphatase fa%2C score 5.2e-47;gbkey=misc_feature;gene=exoA;inference=protein motif:Pfam:PF03372;locus_tag=Cj0255c
gi|15791399|ref|NC_002163.1|	EMBL	gene	234599	236137	.	+	.	ID=gene-Cj0256;Name=Cj0256;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0256
gi|15791399|ref|NC_002163.1|	EMBL	CDS	234599	236137	.	+	0	ID=cds-CAL34410.1;Parent=gene-Cj0256;Dbxref=EnsemblGenomes-Gn:Cj0256,EnsemblGenomes-Tr:CAL34410,GOA:Q0PBP9,InterPro:IPR000917,InterPro:IPR012549,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:Q0PBP9,NCBI_GP:CAL34410.1;Name=CAL34410.1;Note=Original (2000) note: Cj0256%2C probable integral membrane protein%2C len: 512 aa%3B similar to hypothetical proteins e.g. YJDB_ECOLI (547 aa)%2C fasta scores%3B opt: 646 z-score: 1169.8 E(): 0%2C 38.9%25 identity in 530 aa overlap. 34.1%25 identity to HP0022%3B~Updated (2006) note: Pfam domain PF00884 Sulfatase identified within CDS. Also%2C five probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Literature search identified paper giving further clues to product function. Functional classification - Misc%3B~PMID:11895937;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0256;product=putative sulfatase family protein;protein_id=CAL34410.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	234611	234679	.	+	.	ID=id-Cj0256;Note=5 probable transmembrane helices predicted for Cj0256 by TMHMM2.0 at aa 5-27%2C 37-59%2C 66-88%2C 108-127 and 148-170;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0256;part=1/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	234707	234775	.	+	.	ID=id-Cj0256;Note=5 probable transmembrane helices predicted for Cj0256 by TMHMM2.0 at aa 5-27%2C 37-59%2C 66-88%2C 108-127 and 148-170;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0256;part=2/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	234794	234862	.	+	.	ID=id-Cj0256;Note=5 probable transmembrane helices predicted for Cj0256 by TMHMM2.0 at aa 5-27%2C 37-59%2C 66-88%2C 108-127 and 148-170;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0256;part=3/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	234920	234979	.	+	.	ID=id-Cj0256;Note=5 probable transmembrane helices predicted for Cj0256 by TMHMM2.0 at aa 5-27%2C 37-59%2C 66-88%2C 108-127 and 148-170;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0256;part=4/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	235040	235108	.	+	.	ID=id-Cj0256;Note=5 probable transmembrane helices predicted for Cj0256 by TMHMM2.0 at aa 5-27%2C 37-59%2C 66-88%2C 108-127 and 148-170;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0256;part=5/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	235247	236128	.	+	.	ID=id-Cj0256-2;Note=HMMPfam hit to PF00884%2C Sulfatase%2C score 1.3e-98;gbkey=misc_feature;inference=protein motif:Pfam:PF00884;locus_tag=Cj0256
gi|15791399|ref|NC_002163.1|	EMBL	gene	236134	236490	.	+	.	ID=gene-Cj0257;Name=dgkA;gbkey=Gene;gene=dgkA;gene_biotype=protein_coding;locus_tag=Cj0257
gi|15791399|ref|NC_002163.1|	EMBL	CDS	236134	236490	.	+	0	ID=cds-CAL34411.1;Parent=gene-Cj0257;Dbxref=EnsemblGenomes-Gn:Cj0257,EnsemblGenomes-Tr:CAL34411,GOA:Q0PBP8,InterPro:IPR000829,UniProtKB/TrEMBL:Q0PBP8,NCBI_GP:CAL34411.1;Name=CAL34411.1;Note=Original (2000) note: Cj0257%2C dgkA%2C probale diacylglycerol kinase%2C len: 118 aa%3B similar to many e.g. KDGL_ECOLI diacylglycerol kinase (EC 2.7.1.107) (121 aa)%2Cfasta scores%3B opt: 263 z-score: 425.4 E(): 1.9e-16%2C 41.7%25 identity in 108 aa overlap. 38.7%25 identity to HP0700. Contains PS01069 Prokaryotic diacylglycerol kinase signature and Pfam match to entry PF01219 DAGK_prokar%2CProkaryotic diacylglycerol kinase%2C score 114.40%2C E-value 2.2e-30%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Synthesis and modification of macromolecules -Phospholipids%3B~PMID:2984194%2C PMID:3015952;gbkey=CDS;gene=dgkA;inference=protein motif:Prosite:PS01069;locus_tag=Cj0257;product=diacylglycerol kinase;protein_id=CAL34411.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	236134	236478	.	+	.	ID=id-Cj0257;Note=HMMPfam hit to PF01219%2C Prokaryotic diacylglycerol kinase%2C score 3.3e-32;gbkey=misc_feature;gene=dgkA;inference=protein motif:Pfam:PF01219;locus_tag=Cj0257
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	236209	236268	.	+	.	ID=id-Cj0257-2;Note=3 probable transmembrane helices predicted for Cj0257 by TMHMM2.0 at aa 26-45%2C 52-74 and 94-116;gbkey=misc_feature;gene=dgkA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0257;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	236287	236355	.	+	.	ID=id-Cj0257-2;Note=3 probable transmembrane helices predicted for Cj0257 by TMHMM2.0 at aa 26-45%2C 52-74 and 94-116;gbkey=misc_feature;gene=dgkA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0257;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	236413	236481	.	+	.	ID=id-Cj0257-2;Note=3 probable transmembrane helices predicted for Cj0257 by TMHMM2.0 at aa 26-45%2C 52-74 and 94-116;gbkey=misc_feature;gene=dgkA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0257;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	236329	236364	.	+	.	ID=id-Cj0257-3;Note=PS01069 Prokaryotic diacylglycerol kinase signature;gbkey=misc_feature;gene=dgkA;inference=protein motif:Prosite:PS01069;locus_tag=Cj0257
gi|15791399|ref|NC_002163.1|	EMBL	gene	236487	236732	.	+	.	ID=gene-Cj0258;Name=Cj0258;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0258
gi|15791399|ref|NC_002163.1|	EMBL	CDS	236487	236732	.	+	0	ID=cds-CAL34412.1;Parent=gene-Cj0258;Dbxref=EnsemblGenomes-Gn:Cj0258,EnsemblGenomes-Tr:CAL34412,GOA:Q0PBP7,InterPro:IPR008813,InterPro:IPR011991,UniProtKB/TrEMBL:Q0PBP7,NCBI_GP:CAL34412.1;Name=CAL34412.1;Note=Original (2000) note: Cj0258%2C possible DNA binding protein%2C len: 81 aa%3B no Hp match. Contains probable helix-turn-helix motif at aa 35-56 (Score 1128%2C +3.03 SD)%3B~Updated (2006) note: Pfam domain PF01022 Bacterial regulatory protein%2C arsR family was identified within CDS. This was found by carrying out own Pfam search. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Literature search identified paper with some additional information. Functional classification - Broad regulatory functions%3B~PMID:15231810;gbkey=CDS;inference=protein motif:Pfam:PF01022;locus_tag=Cj0258;product=putative bacterial regulatory protein%2C ArsR family;protein_id=CAL34412.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	236722	237729	.	+	.	ID=gene-Cj0259;Name=pyrC;gbkey=Gene;gene=pyrC;gene_biotype=protein_coding;locus_tag=Cj0259
gi|15791399|ref|NC_002163.1|	EMBL	CDS	236722	237729	.	+	0	ID=cds-CAL34413.1;Parent=gene-Cj0259;Dbxref=EnsemblGenomes-Gn:Cj0259,EnsemblGenomes-Tr:CAL34413,GOA:Q0PBP6,InterPro:IPR002195,InterPro:IPR004721,InterPro:IPR006992,PDB:3PNU,UniProtKB/TrEMBL:Q0PBP6,NCBI_GP:CAL34413.1;Name=CAL34413.1;Note=Original (2000) note: Cj0259%2C pyrC%2C probable dihydroorotase%2C len: 335 aa%3B similar to many e.g. PYRC_ECOLI dihydroorotase (EC 3.5.2.3) (347 aa)%2C fasta scores%3B opt: 765 z-score: 983.8 E(): 0%2C 39.4%25 identity in 345 aa overlap. 39.6%25 identity to HP0581. Contains PS00482 and PS00483 Dihydroorotase signatures 1 and 2%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Pyrimidine ribonucleotide biosynthesis%3B~PMID:1671037%2C PMID:2876892;gbkey=CDS;gene=pyrC;inference=protein motif:Prosite:PS00483;locus_tag=Cj0259;product=dihydroorotase;protein_id=CAL34413.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	236725	237726	.	+	.	ID=id-Cj0259;Note=HMMPfam hit to PF01979%2C Amidohydrolase family%2Cscore 1.7e-60;gbkey=misc_feature;gene=pyrC;inference=protein motif:Pfam:PF01979;locus_tag=Cj0259
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	236743	236769	.	+	.	ID=id-Cj0259-2;Note=PS00482 Dihydroorotase signature 1;gbkey=misc_feature;gene=pyrC;inference=protein motif:Prosite:PS00482;locus_tag=Cj0259
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	237424	237459	.	+	.	ID=id-Cj0259-3;Note=PS00483 Dihydroorotase signature 2;gbkey=misc_feature;gene=pyrC;inference=protein motif:Prosite:PS00483;locus_tag=Cj0259
gi|15791399|ref|NC_002163.1|	EMBL	gene	237761	237976	.	-	.	ID=gene-Cj0260c;Name=Cj0260c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0260c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	237761	237976	.	-	0	ID=cds-CAL34414.1;Parent=gene-Cj0260c;Dbxref=EnsemblGenomes-Gn:Cj0260c,EnsemblGenomes-Tr:CAL34414,UniProtKB/TrEMBL:Q0PBP5,NCBI_GP:CAL34414.1;Name=CAL34414.1;Note=Original (2000) note: Cj0260c%2C unknown%2C len: 71 aa%3B no Hp match%2C very hydrophobic%3B~Updated (2006) note: Two probable transmembrane helices identified by TMHMM2.0. Functional classification - Unknown;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0260c;product=small hydrophobic protein;protein_id=CAL34414.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	237797	237865	.	-	.	ID=id-Cj0260c;Note=2 probable transmembrane helices predicted for Cj0260c by TMHMM2.0 at aa 12-34 and 38-60;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0260c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	237875	237943	.	-	.	ID=id-Cj0260c;Note=2 probable transmembrane helices predicted for Cj0260c by TMHMM2.0 at aa 12-34 and 38-60;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0260c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	238032	238751	.	-	.	ID=gene-Cj0261c;Name=Cj0261c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0261c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	238032	238751	.	-	0	ID=cds-CAL34415.1;Parent=gene-Cj0261c;Dbxref=EnsemblGenomes-Gn:Cj0261c,EnsemblGenomes-Tr:CAL34415,GOA:Q0PBP4,InterPro:IPR025714,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PBP4,NCBI_GP:CAL34415.1;Name=CAL34415.1;Note=Original (2000) note: Cj0261c%2C unknown%2C len: 239 aa%3B some similarity in N-terminus to YC73_HAEIN hypothetical protein HI1273 (268 aa)%2C fasta scores%3B opt: 208 z-score: 260.9 E(): 2.8e-07%2C 29.0%25 identity in 176 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF08241 and PF08242 Methyltransferase domains were identified within CDS. ProfileScan also identified PS50193 SAM_BIND domain. Members from methyltransferase family are SAM dependent methyltransferases. This was found by carrying out own Pfam search. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS50193;locus_tag=Cj0261c;product=putative SAM-dependent methyltransferase;protein_id=CAL34415.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	238818	239964	.	-	.	ID=id-gi|15791399|ref|NC_002163.1|:238818..239964;Note=repeat 1: identical to 147606..148684 and 1492913..1493990 (approximate numbers);gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	gene	238832	240829	.	-	.	ID=gene-Cj0262c;Name=Cj0262c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0262c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	238832	240829	.	-	0	ID=cds-CAL34416.1;Parent=gene-Cj0262c;Dbxref=EnsemblGenomes-Gn:Cj0262c,EnsemblGenomes-Tr:CAL34416,GOA:Q0PBP3,InterPro:IPR003660,InterPro:IPR004010,InterPro:IPR004089,InterPro:IPR029151,UniProtKB/TrEMBL:Q0PBP3,NCBI_GP:CAL34416.1;Name=CAL34416.1;Note=Original (2000) note: Cj0262c%2C probable methyl-accepting chemotaxis signal transduction protein%2Clen: 665 aa%3B similar to many e.g. TR:O32443 (EMBL:D86947) Pseudomonas aeruginosa chemotactic transducer (629 aa)%2Cfasta scores%3B opt: 283 z-score: 635.0 E(): 4.1e-28%2C 25.3%25 identity in 667 aa overlap%2C and MCP1_ECOLI methyl-accepting chemotaxis protein I (551 aa)%2C fasta scores%3B opt: 280 z-score: 519.1 E(): 1.2e-21. 29.1%25 identity in 302 aa overlap. No Hp ortholog. C-terminus contains repeat1%2C and is identical to the other repeat 1-containing genes Cj0262c and Cj1564. Contains N-terminal signal sequence and transmembrane anchor around aa 300. Also contains Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2C score 110.60%2C E-value 4.1e-30%3B~Updated (2006) note: Pfam motifs PF05581 Vibrio chemotaxis protein N terminus%2C PF02743 Cache domain and PF00672 HAMP domain were identified within CDS. Further support given to product function. Literature search identified supporting papers giving further clues to product function. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Chemotaxis and mobility%3B~PMID:14985343%2C PMID:15066034;gbkey=CDS;inference=protein motif:Pfam:PF05581;locus_tag=Cj0262c;product=putative methyl-accepting chemotaxis signal transduction protein;protein_id=CAL34416.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	239879	239938	.	-	.	ID=id-Cj0262c;Note=2 probable transmembrane helices predicted for Cj0262c by TMHMM2.0 at aa 15-37 and 298-317;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0262c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	240719	240787	.	-	.	ID=id-Cj0262c;Note=2 probable transmembrane helices predicted for Cj0262c by TMHMM2.0 at aa 15-37 and 298-317;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0262c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	238838	239332	.	-	.	ID=id-Cj0262c-2;Note=HMMPfam hit to PF00015%2C Methyl-accepting chemotaxis protein (MCP) s%2C score 6.4e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF00015;locus_tag=Cj0262c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	239717	239941	.	-	.	ID=id-Cj0262c-3;Note=HMMPfam hit to PF00672%2C HAMP domain%2C score 0.0012;gbkey=misc_feature;inference=protein motif:Pfam:PF00672;locus_tag=Cj0262c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	240146	240382	.	-	.	ID=id-Cj0262c-4;Note=HMMPfam hit to PF02743%2C Cache domain%2C score 0.00011;gbkey=misc_feature;inference=protein motif:Pfam:PF02743;locus_tag=Cj0262c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	240491	240802	.	-	.	ID=id-Cj0262c-5;Note=HMMPfam hit to PF05581%2C Vibrio chemotaxis protein N terminus%2C score 4.3e-68;gbkey=misc_feature;inference=protein motif:Pfam:PF05581;locus_tag=Cj0262c
gi|15791399|ref|NC_002163.1|	EMBL	gene	241022	241897	.	+	.	ID=gene-Cj0263;Name=zupT;gbkey=Gene;gene=zupT;gene_biotype=protein_coding;locus_tag=Cj0263
gi|15791399|ref|NC_002163.1|	EMBL	CDS	241022	241897	.	+	0	ID=cds-CAL34417.1;Parent=gene-Cj0263;Dbxref=EnsemblGenomes-Gn:Cj0263,EnsemblGenomes-Tr:CAL34417,GOA:Q9PIN2,InterPro:IPR003689,InterPro:IPR023498,NCBI_GP:CAL34417.1;Name=CAL34417.1;Note=Original (2000) note: Cj0263%2C probable integral membrane protein%2C len: 291 aa%3B similar to hypothetical proteins e.g. YGIE_ECOLI (257 aa)%2C fasta scores%3B opt: 498 z-score: 952.9 E(): 0%2C 40.0%25 identity in 280 aa overlap and GUFA_MYXXA (254 aa)%2C fasta scores%3B opt: 252 z-score: 298.8 E(): 2.2e-09%2C 26.3%25 identity in 285 aa overlap. No Hp match. Contains PS00107 Protein kinases ATP-binding region signature%3B~Updated (2006) note: Pfam domain PF02535 ZIP Zinc transporter was identified within CDS. Eight probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member due to motif match. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not added. Functional classification - Transport/binding proteins -Other%3B~PMID:11790762%2C PMID:15716430;gbkey=CDS;gene=zupT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0263;product=zinc transporter;protein_id=CAL34417.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	241046	241879	.	+	.	ID=id-Cj0263;Note=HMMPfam hit to PF02535%2C ZIP Zinc transporter%2C score 5.8e-38;gbkey=misc_feature;gene=zupT;inference=protein motif:Pfam:PF02535;locus_tag=Cj0263
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	241049	241117	.	+	.	ID=id-Cj0263-2;Note=8 probable transmembrane helices predicted for Cj0263 by TMHMM2.0 at aa 10-32%2C 39-60%2C 75-94%2C 148-170%2C174-196%2C 209-231%2C 237-259 and 271-290;gbkey=misc_feature;gene=zupT;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0263;part=1/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	241136	241201	.	+	.	ID=id-Cj0263-2;Note=8 probable transmembrane helices predicted for Cj0263 by TMHMM2.0 at aa 10-32%2C 39-60%2C 75-94%2C 148-170%2C174-196%2C 209-231%2C 237-259 and 271-290;gbkey=misc_feature;gene=zupT;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0263;part=2/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	241244	241303	.	+	.	ID=id-Cj0263-2;Note=8 probable transmembrane helices predicted for Cj0263 by TMHMM2.0 at aa 10-32%2C 39-60%2C 75-94%2C 148-170%2C174-196%2C 209-231%2C 237-259 and 271-290;gbkey=misc_feature;gene=zupT;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0263;part=3/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	241463	241531	.	+	.	ID=id-Cj0263-2;Note=8 probable transmembrane helices predicted for Cj0263 by TMHMM2.0 at aa 10-32%2C 39-60%2C 75-94%2C 148-170%2C174-196%2C 209-231%2C 237-259 and 271-290;gbkey=misc_feature;gene=zupT;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0263;part=4/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	241541	241609	.	+	.	ID=id-Cj0263-2;Note=8 probable transmembrane helices predicted for Cj0263 by TMHMM2.0 at aa 10-32%2C 39-60%2C 75-94%2C 148-170%2C174-196%2C 209-231%2C 237-259 and 271-290;gbkey=misc_feature;gene=zupT;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0263;part=5/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	241646	241714	.	+	.	ID=id-Cj0263-2;Note=8 probable transmembrane helices predicted for Cj0263 by TMHMM2.0 at aa 10-32%2C 39-60%2C 75-94%2C 148-170%2C174-196%2C 209-231%2C 237-259 and 271-290;gbkey=misc_feature;gene=zupT;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0263;part=6/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	241730	241798	.	+	.	ID=id-Cj0263-2;Note=8 probable transmembrane helices predicted for Cj0263 by TMHMM2.0 at aa 10-32%2C 39-60%2C 75-94%2C 148-170%2C174-196%2C 209-231%2C 237-259 and 271-290;gbkey=misc_feature;gene=zupT;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0263;part=7/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	241832	241891	.	+	.	ID=id-Cj0263-2;Note=8 probable transmembrane helices predicted for Cj0263 by TMHMM2.0 at aa 10-32%2C 39-60%2C 75-94%2C 148-170%2C174-196%2C 209-231%2C 237-259 and 271-290;gbkey=misc_feature;gene=zupT;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0263;part=8/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	241145	241216	.	+	.	ID=id-Cj0263-3;Note=PS00107 Protein kinases ATP-binding region signature;gbkey=misc_feature;gene=zupT;inference=protein motif:Prosite:PS00107;locus_tag=Cj0263
gi|15791399|ref|NC_002163.1|	EMBL	gene	241921	244437	.	-	.	ID=gene-Cj0264c;Name=Cj0264c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0264c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	241921	244437	.	-	0	ID=cds-CAL34418.1;Parent=gene-Cj0264c;Dbxref=EnsemblGenomes-Gn:Cj0264c,EnsemblGenomes-Tr:CAL34418,GOA:Q0PBP1,InterPro:IPR006311,InterPro:IPR006655,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006658,InterPro:IPR009010,UniProtKB/TrEMBL:Q0PBP1,NCBI_GP:CAL34418.1;Name=CAL34418.1;Note=Original (2000) note: Cj0264c%2C probable molybdopterin-containing oxidoreductase%2C len: 838 aa%3B highly similar to many e.g. DMSA_RHOSH dimethyl sulfoxide reductase precursor (822 aa)%2C fasta scores%3B opt: 1343 z-score: 2990.1 E(): 0%2C 46.8%25 identity in 842 aa overlap%2Cand BISC_ECOLI biotin sulfoxide reductase 1 (739 aa)%2Cfasta scores%3B opt: 1263 z-score: 2612.9 E(): 0%2C 46.7%25 identity in 766 aa overlap. 40.9%25 identity to HP0407. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2CPS00932 Prokaryotic molybdopterin oxidoreductases signature 3%2C Pfam match to entry PF00384 molybdopterin%2CProkaryotic molybdopterin oxidoreductases%2C score 110.50%2CE-value 9.4e-35 and N-terminal signal sequence%3B~Updated (2006) note: Characterisation work in more than one species with acceptable identity scores. Characterisation work within Campylobacter jejuni shows that Cj0264c is responsible for both trimethylamine-N-oxide (TMAO) and dimethyl sulfoxide (DMSO) reduction. Putative not added to product function. Functional classification - Misc%3B~PMID:12107136%2C PMID:11004177%2C PMID:8645727;gbkey=CDS;inference=protein motif:Prosite:PS00932;locus_tag=Cj0264c;product=molybdopterin containing oxidoreductase;protein_id=CAL34418.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	241993	242346	.	-	.	ID=id-Cj0264c;Note=HMMPfam hit to PF01568%2C Molydopterin dinucleotide binding dom%2C score 5.6e-41;gbkey=misc_feature;inference=protein motif:Pfam:PF01568;locus_tag=Cj0264c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	242146	242229	.	-	.	ID=id-Cj0264c-2;Note=PS00932 Prokaryotic molybdopterin oxidoreductases signature 3;gbkey=misc_feature;inference=protein motif:Prosite:PS00932;locus_tag=Cj0264c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	242719	244170	.	-	.	ID=id-Cj0264c-3;Note=HMMPfam hit to PF00384%2C Molybdopterin oxidoreductase%2C score 3.2e-120;gbkey=misc_feature;inference=protein motif:Pfam:PF00384;locus_tag=Cj0264c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	243046	243069	.	-	.	ID=id-Cj0264c-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0264c
gi|15791399|ref|NC_002163.1|	EMBL	gene	244448	245023	.	-	.	ID=gene-Cj0265c;Name=Cj0265c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0265c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	244448	245023	.	-	0	ID=cds-CAL34419.1;Parent=gene-Cj0265c;Dbxref=EnsemblGenomes-Gn:Cj0265c,EnsemblGenomes-Tr:CAL34419,GOA:Q0PBP0,InterPro:IPR009056,UniProtKB/TrEMBL:Q0PBP0,NCBI_GP:CAL34419.1;Name=CAL34419.1;Note=Original (2000) note: Cj0265c%2C probable cytochrome C-type haem-binding periplasmic protein%2C len: 191 aa%3B possibly part of electron-transport chain for oxidoreductase Cj0264c. Similar to C-terminus of many e.g. YECK_ECOLI probable cytochrome C-TYPE protein in bisZ-cutC intergenic region (366 aa)%2C fasta scores%3B opt: 208 z-score: 216.4 E(): 8.5e-05%2C 27.0%25 identity in 163 aa overlap%2C and TORC_ECOLI cytochrome C-type protein torC (390 aa)%2C fasta scores%3B opt: 264 z-score: 216.0 E(): 8.9e-05%2C 26.4%25 identity in 178 aa overlap. No Hp match. Contains N-terminal signal sequence and PS00190 Cytochrome c family heme-binding site signature%3B~Updated (2006) note: Characterised within Escherichia coli%2C however%2C identity score was marginal. Putative kept within product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:11562502%2C PMID:11056172;gbkey=CDS;inference=protein motif:Prosite:PS00190;locus_tag=Cj0265c;product=putative cytochrome C-type haem-binding periplasmic protein;protein_id=CAL34419.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	244592	244609	.	-	.	ID=id-Cj0265c;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0265c
gi|15791399|ref|NC_002163.1|	EMBL	gene	245504	246013	.	-	.	ID=gene-Cj0266c;Name=Cj0266c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0266c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	245504	246013	.	-	0	ID=cds-CAL34420.1;Parent=gene-Cj0266c;Dbxref=EnsemblGenomes-Gn:Cj0266c,EnsemblGenomes-Tr:CAL34420,InterPro:IPR013417,UniProtKB/TrEMBL:Q0PBN9,NCBI_GP:CAL34420.1;Name=CAL34420.1;Note=Original (2000) note: Cj0266c%2C probable integral membrane protein%2C len: 169 aa%3B no Hp match%3B~Updated (2006) note: Two probable transmembrane helices identified by TMHMM2.0. Prosite PS00430 TONB_DEPENDENT_REC_1%2C TonB box%2C N-terminal also identified. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0266c;product=putative integral membrane protein;protein_id=CAL34420.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	245846	245914	.	-	.	ID=id-Cj0266c;Note=2 probable transmembrane helices predicted for Cj0266c by TMHMM2.0 at aa 5-27 and 34-56;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0266c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	245933	246001	.	-	.	ID=id-Cj0266c;Note=2 probable transmembrane helices predicted for Cj0266c by TMHMM2.0 at aa 5-27 and 34-56;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0266c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	245759	246013	.	-	.	ID=id-Cj0266c-2;Note=PS00430 TonB-dependent receptor proteins signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00430;locus_tag=Cj0266c
gi|15791399|ref|NC_002163.1|	EMBL	gene	246013	246543	.	-	.	ID=gene-Cj0267c;Name=Cj0267c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0267c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	246013	246543	.	-	0	ID=cds-CAL34421.1;Parent=gene-Cj0267c;Dbxref=EnsemblGenomes-Gn:Cj0267c,EnsemblGenomes-Tr:CAL34421,InterPro:IPR013417,UniProtKB/TrEMBL:Q0PBN8,NCBI_GP:CAL34421.1;Name=CAL34421.1;Note=Original (2000) note: Cj0267c%2C probable integral membrane protein%2C len: 176 aa%3B no Hp match%3B~Updated (2006) note: Two probable transmembrane helices identified by TMHMM2.0. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0267c;product=putative integral membrane protein;protein_id=CAL34421.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	246346	246414	.	-	.	ID=id-Cj0267c;Note=2 probable transmembrane helices predicted for Cj0267c by TMHMM2.0 at aa 15-37 and 44-66;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0267c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	246433	246501	.	-	.	ID=id-Cj0267c;Note=2 probable transmembrane helices predicted for Cj0267c by TMHMM2.0 at aa 15-37 and 44-66;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0267c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	246555	247643	.	-	.	ID=gene-Cj0268c;Name=Cj0268c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0268c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	246555	247643	.	-	0	ID=cds-CAL34422.1;Parent=gene-Cj0268c;Dbxref=EnsemblGenomes-Gn:Cj0268c,EnsemblGenomes-Tr:CAL34422,GOA:Q0PBN7,InterPro:IPR000163,InterPro:IPR001107,InterPro:IPR001972,UniProtKB/TrEMBL:Q0PBN7,NCBI_GP:CAL34422.1;Name=CAL34422.1;Note=Original (2000) note: Cj0268c%2C probable transmembrane protein%2C len: 362 aa%3B 55.9%25 identity to HP0248. Contains one transmembrane domain around aa 60%3B~Updated (2006) note: Pfam domain PF01145 SPFH domain / Band was identified within CDS. FPrintScan PR00679 Prohibitin was also identified. The FPrintScan identified is a child of the Pfam protein. No specific characherisation with acceptable identity scores have been carried out yet. Putative kept within product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Pfam:PF01145;locus_tag=Cj0268c;product=putative transmembrane protein;protein_id=CAL34422.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	246852	247460	.	-	.	ID=id-Cj0268c;Note=HMMPfam hit to PF01145%2C SPFH domain / Band%2C score 2.3e-37;gbkey=misc_feature;inference=protein motif:Pfam:PF01145;locus_tag=Cj0268c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	247446	247514	.	-	.	ID=id-Cj0268c-2;Note=1 probable transmembrane helix predicted for Cj0268c by TMHMM2.0 at aa 44-66;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0268c
gi|15791399|ref|NC_002163.1|	EMBL	gene	247656	248570	.	-	.	ID=gene-Cj0269c;Name=ilvE;gbkey=Gene;gene=ilvE;gene_biotype=protein_coding;locus_tag=Cj0269c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	247656	248570	.	-	0	ID=cds-CAL34423.1;Parent=gene-Cj0269c;Dbxref=EnsemblGenomes-Gn:Cj0269c,EnsemblGenomes-Tr:CAL34423,GOA:Q0PBN6,InterPro:IPR001544,InterPro:IPR005785,UniProtKB/TrEMBL:Q0PBN6,NCBI_GP:CAL34423.1;Name=CAL34423.1;Note=Original (2000) note: Cj0269c%2C ilvE%2C probable branched-chain amino acid aminotransferase%2C len: 304 aa%3B highly similar to many e.g. ILVE_ECOLI branched-chain amino acid aminotransferase (EC 2.6.1.42) (308 aa)%2C fasta scores%3B opt: 823 z-score: 1182.1 E(): 0%2C 46.3%25 identity in 296 aa overlap. 33.2%25 identity to HP1468. Contains Pfam match to entry PF01063 AA_transferase_C4%2C Aminotransferase class IV%2C score 300.30%2C E-value 2.4e-86%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Branched chain family%3B~PMID:3897211;gbkey=CDS;gene=ilvE;inference=protein motif:Pfam:PF01063;locus_tag=Cj0269c;product=branched-chain amino acid aminotransferase;protein_id=CAL34423.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	247710	248543	.	-	.	ID=id-Cj0269c;Note=HMMPfam hit to PF01063%2C Aminotransferase class IV%2Cscore 6.2e-88;gbkey=misc_feature;gene=ilvE;inference=protein motif:Pfam:PF01063;locus_tag=Cj0269c
gi|15791399|ref|NC_002163.1|	EMBL	gene	248747	248953	.	+	.	ID=gene-Cj0270;Name=Cj0270;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0270
gi|15791399|ref|NC_002163.1|	EMBL	CDS	248747	248953	.	+	0	ID=cds-CAL34424.1;Parent=gene-Cj0270;Dbxref=EnsemblGenomes-Gn:Cj0270,EnsemblGenomes-Tr:CAL34424,GOA:Q9PIM5,InterPro:IPR004370,InterPro:IPR014347,NCBI_GP:CAL34424.1;Name=CAL34424.1;Note=Original (2000) note: Cj0270%2C possible isomerase%2Clen: 68 aa%3B some similarity hypothetical proteins and to to e.g. DMPI_PSESP 4-oxalocrotonate tautomerase (EC 5.3.2.-) ( (62 aa)%2C fasta scores%3B opt: 91 z-score: 182.5 E(): 0.0066%2C 28.0%25 identity in 50 aa overlap%2C and XYLH_PSEPU 4-oxalocrotonate tautomerase (62 aa)%2C fasta scores%3B opt: 86 z-score: 164.7 E(): 0.064%2C 25.8%25 identity in 62 aa overlap. No Hp ortholog%2C but 37.3%25 identity to HP0924. Also similar to Cj1255 (37.7%25 identity in 69 aa overlap)%3B~Updated (2006) note: Pfam domain PF01361 Tautomerase enzyme was identified within CDS. Product modified to more specific family member due to motif match. Some characterisation has been carried out within Pseudomonas species%2C however%2C identity scores were marginal. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF01361;locus_tag=Cj0270;product=putative tautomerase family protein;protein_id=CAL34424.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	248750	248932	.	+	.	ID=id-Cj0270;Note=HMMPfam hit to PF01361%2C Tautomerase enzyme%2C score 1.4e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF01361;locus_tag=Cj0270
gi|15791399|ref|NC_002163.1|	EMBL	gene	248950	249405	.	+	.	ID=gene-Cj0271;Name=Cj0271;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0271
gi|15791399|ref|NC_002163.1|	EMBL	CDS	248950	249405	.	+	0	ID=cds-CAL34425.1;Parent=gene-Cj0271;Dbxref=EnsemblGenomes-Gn:Cj0271,EnsemblGenomes-Tr:CAL34425,GOA:Q0PBN4,InterPro:IPR000866,InterPro:IPR012336,InterPro:IPR024706,UniProtKB/TrEMBL:Q0PBN4,NCBI_GP:CAL34425.1;Name=CAL34425.1;Note=Original (2000) note: Cj0271%2C bacterioferritin comigratory protein homolog%2C len: 151 aa%3B similar to many e.g. BCP_ECOLI bacterioferritin comigratory protein (156 aa)%2C fasta scores%3B opt: 390 z-score: 675.8 E(): 2.2e-30%2C39.6%25 identity in 149 aa overlap. 57.0%25 identity to HP0136. Contains Pfam match to entry PF00578 AhpC-TSA%2CAhpC/TSA family%2C score 146.30%2C E-value 5.4e-40%3B~Updated (2006) note: Some characterisation work within Escherichia coli shows Cj0271 to be putative peroxiredoxin (EC.1.11.1.15)%2C bcp. Literature search also identified work within Helicobacter pylori. Product function kept the same. Functional classification - Misc%3B~PMID:15618175%2C PMID:12576586%2C PMID:14506251;gbkey=CDS;inference=protein motif:Pfam:PF00578;locus_tag=Cj0271;product=bacterioferritin comigratory protein homolog;protein_id=CAL34425.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	248962	249387	.	+	.	ID=id-Cj0271;Note=HMMPfam hit to PF00578%2C AhpC/TSA family%2C score 4e-41;gbkey=misc_feature;inference=protein motif:Pfam:PF00578;locus_tag=Cj0271
gi|15791399|ref|NC_002163.1|	EMBL	gene	249405	250496	.	+	.	ID=gene-Cj0272;Name=Cj0272;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0272
gi|15791399|ref|NC_002163.1|	EMBL	CDS	249405	250496	.	+	0	ID=cds-CAL34426.1;Parent=gene-Cj0272;Dbxref=EnsemblGenomes-Gn:Cj0272,EnsemblGenomes-Tr:CAL34426,InterPro:IPR003828,UniProtKB/TrEMBL:Q0PBN3,NCBI_GP:CAL34426.1;Name=CAL34426.1;Note=Original (2000) note: Cj0272%2C unknown%2C len: 363 aa%3B similar to hypothetical proteins e.g. TR:O66919 (EMBL:) Aquifex aeolicus AQ_701 (413 aa)%2C fasta scores%3B opt: 830 z-score: 1296.8 E(): 0%2C 48.0%25 identity in 254 aa overlap. 37.4%25 identity to HP0100%3B~Updated (2006) note: Pfam PF02677 Uncharacterized BCR was present within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02677;locus_tag=Cj0272;product=conserved hypothetical protein Cj0272;protein_id=CAL34426.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	249405	250016	.	+	.	ID=id-Cj0272;Note=HMMPfam hit to PF02677%2C Uncharacterized BCR%2CCOG1636%2C score 2.6e-97;gbkey=misc_feature;inference=protein motif:Pfam:PF02677;locus_tag=Cj0272
gi|15791399|ref|NC_002163.1|	EMBL	gene	250590	251030	.	+	.	ID=gene-Cj0273;Name=fabZ;gbkey=Gene;gene=fabZ;gene_biotype=protein_coding;locus_tag=Cj0273
gi|15791399|ref|NC_002163.1|	EMBL	CDS	250590	251030	.	+	0	ID=cds-CAL34427.1;Parent=gene-Cj0273;Dbxref=EnsemblGenomes-Gn:Cj0273,EnsemblGenomes-Tr:CAL34427,GOA:Q9PIM2,InterPro:IPR010084,InterPro:IPR013114,InterPro:IPR029069,NCBI_GP:CAL34427.1;Name=CAL34427.1;Note=Original (2000) note: Cj0273%2C fabZ%2C probable (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase%2Clen: 146 aa%3B similar to many e.g. FABZ_ECOLI (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase (EC 4.2.1.-) (151 aa)%2C fasta scores%3B opt: 450 z-score: 717.9 E(): 9.9e-33%2C 47.1%25 identity in 138 aa overlap. 56.8%25 identity to HP1376%3B~Updated (2006) note: Pfam domain PF03061 Thioesterase superfamily identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Fatty acid biosynthesis%3B~PMID:7806516;gbkey=CDS;gene=fabZ;inference=protein motif:Pfam:PF03061;locus_tag=Cj0273;product=(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase;protein_id=CAL34427.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	250725	250997	.	+	.	ID=id-Cj0273;Note=HMMPfam hit to PF03061%2C Thioesterase superfamily%2Cscore 2.4e-21;gbkey=misc_feature;gene=fabZ;inference=protein motif:Pfam:PF03061;locus_tag=Cj0273
gi|15791399|ref|NC_002163.1|	EMBL	gene	251030	251821	.	+	.	ID=gene-Cj0274;Name=lpxA;gbkey=Gene;gene=lpxA;gene_biotype=protein_coding;locus_tag=Cj0274
gi|15791399|ref|NC_002163.1|	EMBL	CDS	251030	251821	.	+	0	ID=cds-CAL34428.1;Parent=gene-Cj0274;Dbxref=EnsemblGenomes-Gn:Cj0274,EnsemblGenomes-Tr:CAL34428,GOA:Q9PIM1,InterPro:IPR001451,InterPro:IPR010137,InterPro:IPR011004,InterPro:IPR018357,InterPro:IPR029098,PDB:3R0S,NCBI_GP:CAL34428.1;Name=CAL34428.1;Note=Original (2000) note: Cj0274%2C lpxA%2C probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase%2C len: 263 aa%3B similar to many e.g. LPXA_ECOLI acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) (262 aa)%2C fasta scores%3B opt: 632 z-score: 961.5 E(): 0%2C 37.4%25 identity in 254 aa overlap. 42.6%25 identity to HP1375. Contains PS00101 Hexapeptide-repeat containing-transferases signature and 5x Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:3277952;gbkey=CDS;gene=lpxA;inference=protein motif:Prosite:PS00101;locus_tag=Cj0274;product=acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase;protein_id=CAL34428.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	251048	251101	.	+	.	ID=id-Cj0274;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 0.78;gbkey=misc_feature;gene=lpxA;inference=protein motif:Pfam:PF00132;locus_tag=Cj0274
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	251120	251173	.	+	.	ID=id-Cj0274-2;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 0.072;gbkey=misc_feature;gene=lpxA;inference=protein motif:Pfam:PF00132;locus_tag=Cj0274
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	251174	251227	.	+	.	ID=id-Cj0274-3;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 1.3;gbkey=misc_feature;gene=lpxA;inference=protein motif:Pfam:PF00132;locus_tag=Cj0274
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	251267	251320	.	+	.	ID=id-Cj0274-4;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 0.075;gbkey=misc_feature;gene=lpxA;inference=protein motif:Pfam:PF00132;locus_tag=Cj0274
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	251342	251395	.	+	.	ID=id-Cj0274-5;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 0.011;gbkey=misc_feature;gene=lpxA;inference=protein motif:Pfam:PF00132;locus_tag=Cj0274
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	251414	251467	.	+	.	ID=id-Cj0274-6;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 2.8;gbkey=misc_feature;gene=lpxA;inference=protein motif:Pfam:PF00132;locus_tag=Cj0274
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	251423	251509	.	+	.	ID=id-Cj0274-7;Note=PS00101 Hexapeptide-repeat containing-transferases signature;gbkey=misc_feature;gene=lpxA;inference=protein motif:Prosite:PS00101;locus_tag=Cj0274
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	251504	251557	.	+	.	ID=id-Cj0274-8;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 50;gbkey=misc_feature;gene=lpxA;inference=protein motif:Pfam:PF00132;locus_tag=Cj0274
gi|15791399|ref|NC_002163.1|	EMBL	gene	251784	253037	.	+	.	ID=gene-Cj0275;Name=clpX;gbkey=Gene;gene=clpX;gene_biotype=protein_coding;locus_tag=Cj0275
gi|15791399|ref|NC_002163.1|	EMBL	CDS	251784	253037	.	+	0	ID=cds-CAL34429.1;Parent=gene-Cj0275;Dbxref=EnsemblGenomes-Gn:Cj0275,EnsemblGenomes-Tr:CAL34429,GOA:Q9PIM0,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004487,InterPro:IPR010603,InterPro:IPR019489,InterPro:IPR025943,InterPro:IPR027417,NCBI_GP:CAL34429.1;Name=CAL34429.1;Note=Original (2000) note: Cj0275%2C clpX%2C probable ATP-dependent clp protease ATP-binding subunit clpX%2C len: 417 aa%3B highly similar to many e.g. CLPX_ECOLI ATP-dependent clp protease ATP-binding subunit clpX (423 aa)%2C fasta scores%3B opt: 1432 z-score: 1938.7 E(): 0%2C 55.6%25 identity in 408 aa overlap. 59.0%25 identity to HP1374. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Degradation of macromolecules - Proteins%2C peptides and glycopeptides%3B~PMID:8226770%2C PMID:7743994;gbkey=CDS;gene=clpX;inference=protein motif:Prosite:PS00017;locus_tag=Cj0275;product=ATP-dependent Clp protease ATP-binding subunit;protein_id=CAL34429.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	251826	251942	.	+	.	ID=id-Cj0275;Note=HMMPfam hit to PF06689%2C ClpX C4-type zinc finger%2Cscore 3.2e-14;gbkey=misc_feature;gene=clpX;inference=protein motif:Pfam:PF06689;locus_tag=Cj0275
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	252132	252719	.	+	.	ID=id-Cj0275-2;Note=HMMPfam hit to PF07724%2C ATPase family associated with various cell%2C score 2.7e-77;gbkey=misc_feature;gene=clpX;inference=protein motif:Pfam:PF07724;locus_tag=Cj0275
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	252144	252767	.	+	.	ID=id-Cj0275-3;Note=HMMPfam hit to PF00004%2C ATPase family associated with various cell%2C score 1.1e-26;gbkey=misc_feature;gene=clpX;inference=protein motif:Pfam:PF00004;locus_tag=Cj0275
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	252159	252182	.	+	.	ID=id-Cj0275-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=clpX;inference=protein motif:Prosite:PS00017;locus_tag=Cj0275
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	252315	252362	.	+	.	ID=id-Cj0275-5;Note=PS00676 Sigma-54 interaction domain ATP-binding region B signature;gbkey=misc_feature;gene=clpX;inference=protein motif:Prosite:PS00676;locus_tag=Cj0275
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	252478	252485	.	+	.	ID=id-Cj0275-6;Note=G(8);gbkey=repeat_region;gene=clpX;locus_tag=Cj0275
gi|15791399|ref|NC_002163.1|	EMBL	gene	253049	254089	.	+	.	ID=gene-Cj0276;Name=mreB;gbkey=Gene;gene=mreB;gene_biotype=protein_coding;locus_tag=Cj0276
gi|15791399|ref|NC_002163.1|	EMBL	CDS	253049	254089	.	+	0	ID=cds-CAL34430.1;Parent=gene-Cj0276;Dbxref=EnsemblGenomes-Gn:Cj0276,EnsemblGenomes-Tr:CAL34430,GOA:Q0PBM9,InterPro:IPR004753,UniProtKB/TrEMBL:Q0PBM9,NCBI_GP:CAL34430.1;Name=CAL34430.1;Note=Original (2000) note: Cj0276%2C mreB%2C homolog of E. coli rod shape-determining protein%2C len: 346 aa%3B highly similar to many e.g. MREB_ECOLI rod shape-determining protein mreB (347 aa)%2C fasta scores%3B opt: 1199 z-score: 1757.3 E(): 0%2C 55.8%25 identity in 339 aa overlap. 71.4%25 identity to HP1373. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF06723 MreB/Mbl protein was identified within CDS. MreB is known to be a rod shape-determining protein in bacteria and makes up the bacterial cytoskeleton. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Product function kept the same. Functional classification - Cell division%3B~PMID:3049542%2C PMID:2687239;gbkey=CDS;gene=mreB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0276;product=homolog of E. coli rod shape-determining protein;protein_id=CAL34430.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	253079	254071	.	+	.	ID=id-Cj0276;Note=HMMPfam hit to PF06723%2C MreB/Mbl protein%2C score 6.5e-229;gbkey=misc_feature;gene=mreB;inference=protein motif:Pfam:PF06723;locus_tag=Cj0276
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	253226	253249	.	+	.	ID=id-Cj0276-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=mreB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0276
gi|15791399|ref|NC_002163.1|	EMBL	gene	254079	254828	.	+	.	ID=gene-Cj0277;Name=mreC;gbkey=Gene;gene=mreC;gene_biotype=protein_coding;locus_tag=Cj0277
gi|15791399|ref|NC_002163.1|	EMBL	CDS	254079	254828	.	+	0	ID=cds-CAL34431.1;Parent=gene-Cj0277;Dbxref=EnsemblGenomes-Gn:Cj0277,EnsemblGenomes-Tr:CAL34431,GOA:Q0PBM8,InterPro:IPR007221,UniProtKB/TrEMBL:Q0PBM8,NCBI_GP:CAL34431.1;Name=CAL34431.1;Note=Original (2000) note: Cj0277%2C probable periplasmic protein%2C len: 249 aa%3B 30.2%25 identity to HP1372 annotated as rod shape-determining protein (mreC)%2C no apparent match to any other mreC genes. Contains N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF04085 rod shape-determining protein MreC was identified within CDS. MreC (murein formation C) is involved in the rod shape determination in E. coli%2C and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Product changed due to motif match. Functional classification - Cell division%3B~PMID:2687239%2C PMID:12867458%2C PMID:15612918;gbkey=CDS;gene=mreC;inference=protein motif:Pfam:PF04085;locus_tag=Cj0277;product=homolog of E. coli rod shape-determining protein;protein_id=CAL34431.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	254091	254150	.	+	.	ID=id-Cj0277;Note=1 probable transmembrane helix predicted for Cj0277 by TMHMM2.0 at aa 5-24;gbkey=misc_feature;gene=mreC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0277
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	254388	254825	.	+	.	ID=id-Cj0277-2;Note=HMMPfam hit to PF04085%2C rod shape-determining protein MreC%2C score 2.4e-43;gbkey=misc_feature;gene=mreC;inference=protein motif:Pfam:PF04085;locus_tag=Cj0277
gi|15791399|ref|NC_002163.1|	EMBL	gene	255089	258358	.	+	.	ID=gene-Cj0279;Name=carB;gbkey=Gene;gene=carB;gene_biotype=protein_coding;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	CDS	255089	258358	.	+	0	ID=cds-CAL34432.1;Parent=gene-Cj0279;Dbxref=EnsemblGenomes-Gn:Cj0279,EnsemblGenomes-Tr:CAL34432,GOA:Q9PIL7,InterPro:IPR005479,InterPro:IPR005480,InterPro:IPR005481,InterPro:IPR005483,InterPro:IPR006275,InterPro:IPR011607,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,NCBI_GP:CAL34432.1;Name=CAL34432.1;Note=Original (2000) note: Cj0279%2C carB%2C probable carbamoyl-phosphate synthase large chain%2C len: 1089 aa%3B highly similar to many e.g. CARB_ECOLI carbamoyl-phosphate synthase large chain (EC 6.3.5.5) (1072 aa)%2C fasta scores%3B opt: 3268 z-score: 4517.4 E(): 0%2C 55.3%25 identity in 1098 aa overlap. 62.5%25 identity to HP0919. Contains 2x PS00866 Carbamoyl-phosphate synthase subdomain signature 1%2C 2x PS00867 Carbamoyl-phosphate synthase subdomain signature 2%2C and 2x Pfam match to entry PF00289 CPSase_L_chain%2CCarbamoyl-phosphate synthase (CPSase). Also contains apparent N-terminal signal sequence with appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Pyrimidine ribonucleotide biosynthesis%3B~PMID:6308632;gbkey=CDS;gene=carB;inference=protein motif:Prosite:PS00867;locus_tag=Cj0279;product=carbamoyl-phosphate synthase large chain;protein_id=CAL34432.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	255104	255460	.	+	.	ID=id-Cj0279;Note=HMMPfam hit to PF00289%2C Carbamoyl-phosphate synthase L chain%2C%2C score 1.8e-45;gbkey=misc_feature;gene=carB;inference=protein motif:Pfam:PF00289;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	255128	255160	.	+	.	ID=id-Cj0279-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=carB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	255464	256168	.	+	.	ID=id-Cj0279-3;Note=HMMPfam hit to PF02786%2C Carbamoyl-phosphate synthase L chain%2C%2C score 2.3e-112;gbkey=misc_feature;gene=carB;inference=protein motif:Pfam:PF02786;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	255572	255616	.	+	.	ID=id-Cj0279-4;Note=PS00866 Carbamoyl-phosphate synthase subdomain signature 1;gbkey=misc_feature;gene=carB;inference=protein motif:Prosite:PS00866;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	255971	255994	.	+	.	ID=id-Cj0279-5;Note=PS00867 Carbamoyl-phosphate synthase subdomain signature 2;gbkey=misc_feature;gene=carB;inference=protein motif:Prosite:PS00867;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	256334	256717	.	+	.	ID=id-Cj0279-6;Note=HMMPfam hit to PF02787%2C Carbamoyl-phosphate synthetase large c%2C score 2.8e-46;gbkey=misc_feature;gene=carB;inference=protein motif:Pfam:PF02787;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	256763	257107	.	+	.	ID=id-Cj0279-7;Note=HMMPfam hit to PF00289%2C Carbamoyl-phosphate synthase L chain%2C%2C score 3.2e-19;gbkey=misc_feature;gene=carB;inference=protein motif:Pfam:PF00289;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	257111	257764	.	+	.	ID=id-Cj0279-8;Note=HMMPfam hit to PF02786%2C Carbamoyl-phosphate synthase L chain%2C%2C score 8e-25;gbkey=misc_feature;gene=carB;inference=protein motif:Pfam:PF02786;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	257219	257263	.	+	.	ID=id-Cj0279-9;Note=PS00866 Carbamoyl-phosphate synthase subdomain signature 1;gbkey=misc_feature;gene=carB;inference=protein motif:Prosite:PS00866;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	257606	257629	.	+	.	ID=id-Cj0279-10;Note=PS00867 Carbamoyl-phosphate synthase subdomain signature 2;gbkey=misc_feature;gene=carB;inference=protein motif:Prosite:PS00867;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	257999	258259	.	+	.	ID=id-Cj0279-11;Note=HMMPfam hit to PF02142%2C MGS-like domain%2C score 2.5e-28;gbkey=misc_feature;gene=carB;inference=protein motif:Pfam:PF02142;locus_tag=Cj0279
gi|15791399|ref|NC_002163.1|	EMBL	gene	258355	258777	.	+	.	ID=gene-Cj0280;Name=Cj0280;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0280
gi|15791399|ref|NC_002163.1|	EMBL	CDS	258355	258777	.	+	0	ID=cds-CAL34433.1;Parent=gene-Cj0280;Dbxref=EnsemblGenomes-Gn:Cj0280,EnsemblGenomes-Tr:CAL34433,InterPro:IPR017945,UniProtKB/TrEMBL:Q0PBM6,NCBI_GP:CAL34433.1;Name=CAL34433.1;Note=Original (2000) note: Cj0280%2C unknown%2C len: 140 aa%3B 52.8%25 identity to HP0918. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0280;product=hypothetical protein Cj0280;protein_id=CAL34433.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	258778	259755	.	-	.	ID=gene-Cj0281c;Name=tal;gbkey=Gene;gene=tal;gene_biotype=protein_coding;locus_tag=Cj0281c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	258778	259755	.	-	0	ID=cds-CAL34434.1;Parent=gene-Cj0281c;Dbxref=EnsemblGenomes-Gn:Cj0281c,EnsemblGenomes-Tr:CAL34434,GOA:Q9PIL5,InterPro:IPR001585,InterPro:IPR004732,InterPro:IPR013785,InterPro:IPR018225,NCBI_GP:CAL34434.1;Name=CAL34434.1;Note=Original (2000) note: Cj0281c%2C tal%2C probable transaldolase%2C len: 325 aa%3B similar to e.g. TAL_NOSS2 transaldolase (EC 2.2.1.2) (381 aa)%2C fasta scores%3B opt: 361 z-score: 582.9 E(): 3.3e-25%2C 28.7%25 identity in 362 aa overlap and TALB_ECOLI transaldolase B (EC 2.2.1.2) (316 aa)%2C fasta scores%3B opt: 193 z-score: 295.4 E(): 3.4e-09%2C28.8%25 identity in 177 aa overlap. 43.4%25 identity to HP1495. Contains PS01054 Transaldolase signature 1 and Pfam match to entry PF00923 Transaldolase%2C Transaldolase%2Cscore 112.30%2C E-value 1.9e-30%3B~Updated (2006) note: No specific characterisation with acceptable identity scores (covering full sequence). Putative kept within product function. Functional classification - Energy metabolism - Non-oxidative branch;gbkey=CDS;gene=tal;inference=protein motif:Prosite:PS01054;locus_tag=Cj0281c;product=putative transaldolase;protein_id=CAL34434.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	258781	259719	.	-	.	ID=id-Cj0281c;Note=HMMPfam hit to PF00923%2C Transaldolase%2C score 7e-34;gbkey=misc_feature;gene=tal;inference=protein motif:Pfam:PF00923;locus_tag=Cj0281c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	259642	259668	.	-	.	ID=id-Cj0281c-2;Note=PS01054 Transaldolase signature 1;gbkey=misc_feature;gene=tal;inference=protein motif:Prosite:PS01054;locus_tag=Cj0281c
gi|15791399|ref|NC_002163.1|	EMBL	gene	259755	260378	.	-	.	ID=gene-Cj0282c;Name=serB;gbkey=Gene;gene=serB;gene_biotype=protein_coding;locus_tag=Cj0282c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	259755	260378	.	-	0	ID=cds-CAL34435.1;Parent=gene-Cj0282c;Dbxref=EnsemblGenomes-Gn:Cj0282c,EnsemblGenomes-Tr:CAL34435,GOA:Q0PBM4,InterPro:IPR004469,InterPro:IPR006383,InterPro:IPR023190,InterPro:IPR023214,UniProtKB/TrEMBL:Q0PBM4,NCBI_GP:CAL34435.1;Name=CAL34435.1;Note=Original (2000) note: Cj0282c%2C serB%2C possible phosphoserine phosphatase%2C len: 207 aa%3B similar to C-terminus of SERB_ECOLI phosphoserine phosphatase (EC 3.1.3.3) (322 aa)%2C fasta scores%3B opt: 361 z-score: 572.4 E(): 1.3e-24%2C 34.3%25 identity in 204 aa overlap. 48.8%25 identity to HP0652%3B~Updated (2006) note: Pfam domain PF00702 haloacid dehalogenase-like hydrolase were identified within CDS. TIGRFAM motif TIGR00338%2C serB phosphoserine phosphatase identified along with TIGR01488 HAD-SF-IB: HAD-superfamily hydrolase within CDS. Further support for product function. Characterised within Escherichia coli with acceptable identity scores%2C however%2C alignment was only partial. Putative kept in product function. Functional classification - Amino acid biosynthesis - Serine family%3B~PMID:2997734;gbkey=CDS;gene=serB;inference=protein motif:Pfam:PF00702;locus_tag=Cj0282c;product=putative phosphoserine phosphatase;protein_id=CAL34435.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	259824	260375	.	-	.	ID=id-Cj0282c;Note=HMMPfam hit to PF00702%2C haloacid dehalogenase-like hydrolase%2C score 5.8e-18;gbkey=misc_feature;gene=serB;inference=protein motif:Pfam:PF00702;locus_tag=Cj0282c
gi|15791399|ref|NC_002163.1|	EMBL	gene	260378	260899	.	-	.	ID=gene-Cj0283c;Name=cheW;gbkey=Gene;gene=cheW;gene_biotype=protein_coding;locus_tag=Cj0283c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	260378	260899	.	-	0	ID=cds-CAL34436.1;Parent=gene-Cj0283c;Dbxref=EnsemblGenomes-Gn:Cj0283c,EnsemblGenomes-Tr:CAL34436,GOA:Q0PBM3,InterPro:IPR002545,UniProtKB/TrEMBL:Q0PBM3,NCBI_GP:CAL34436.1;Name=CAL34436.1;Note=Original (2000) note: Cj0283c%2C cheW%2C probable chemotaxis protein%2C len: 173 aa%3B similar to many e.g. CHEW_ECOLI purine-binding chemotaxis protein (167 aa)%2Cfasta scores%3B opt: 236 z-score: 304.4 E(): 1.1e-09%2C 32.4%25 identity in 139 aa overlap. 51.4%25 identity to HP0391%3B~Updated (2006) note: Pfam domain PF01584 CheW-like domain identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Chemotaxis and mobility%3B~PMID:2068106%2C PMID:3510184;gbkey=CDS;gene=cheW;inference=protein motif:Pfam:PF01584;locus_tag=Cj0283c;product=chemotaxis protein;protein_id=CAL34436.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	260381	260809	.	-	.	ID=id-Cj0283c;Note=HMMPfam hit to PF01584%2C CheW-like domain%2C score 5.9e-30;gbkey=misc_feature;gene=cheW;inference=protein motif:Pfam:PF01584;locus_tag=Cj0283c
gi|15791399|ref|NC_002163.1|	EMBL	gene	260904	263213	.	-	.	ID=gene-Cj0284c;Name=cheA;gbkey=Gene;gene=cheA;gene_biotype=protein_coding;locus_tag=Cj0284c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	260904	263213	.	-	0	ID=cds-CAL34437.1;Parent=gene-Cj0284c;Dbxref=EnsemblGenomes-Gn:Cj0284c,EnsemblGenomes-Tr:CAL34437,GOA:Q0PBM2,InterPro:IPR001789,InterPro:IPR002545,InterPro:IPR003594,InterPro:IPR004105,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR008207,InterPro:IPR009082,InterPro:IPR011006,UniProtKB/TrEMBL:Q0PBM2,NCBI_GP:CAL34437.1;Name=CAL34437.1;Note=Original (2000) note: Cj0284c%2C cheA%2C probable chemotaxis histidine kinase%2C len: 769 aa%3B similar to many e.g. CHEA_ECOLI chemotaxis protein cheA (EC 2.7.3.-) (654 aa)%2C fasta scores%3B opt: 1022 z-score: 1416.0 E(): 0%2C 35.7%25 identity in 658 aa overlap. 64.6%25 identity to HP0392. Contains Pfam matches to entry PF00072 response_reg%2CResponse regulator receiver domain%2C score 103.80%2C E-value 3.4e-27 and to entry PF00512 signal%2C Signal carboxyl-terminal domain%2C score -12.30%2C E-value 0.00013%3B~Updated (2006) note: Characterised within Escherichia coli with marginal identity scores. Putative not added to product function. Functional classification -Chemotaxis and mobility%3B~PMID:1938941%2C PMID:2068106;gbkey=CDS;gene=cheA;inference=protein motif:Pfam:PF00512;locus_tag=Cj0284c;product=chemotaxis histidine kinase;protein_id=CAL34437.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	260907	261275	.	-	.	ID=id-Cj0284c;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 4.4e-25;gbkey=misc_feature;gene=cheA;inference=protein motif:Pfam:PF00072;locus_tag=Cj0284c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	260925	261002	.	-	.	ID=id-Cj0284c-2;Note=PS00217 Sugar transport proteins signature 2;gbkey=misc_feature;gene=cheA;inference=protein motif:Prosite:PS00217;locus_tag=Cj0284c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	261345	261740	.	-	.	ID=id-Cj0284c-3;Note=HMMPfam hit to PF01584%2C CheW-like domain%2C score 1.8e-28;gbkey=misc_feature;gene=cheA;inference=protein motif:Pfam:PF01584;locus_tag=Cj0284c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	261753	262181	.	-	.	ID=id-Cj0284c-4;Note=HMMPfam hit to PF02518%2C Histidine kinase-%2C DNA gyrase B-%2C and HS%2C score 3.2e-28;gbkey=misc_feature;gene=cheA;inference=protein motif:Pfam:PF02518;locus_tag=Cj0284c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	262314	262520	.	-	.	ID=id-Cj0284c-5;Note=HMMPfam hit to PF02895%2C Signal transducing histidine kinase%2C hom%2C score 3.7e-24;gbkey=misc_feature;gene=cheA;inference=protein motif:Pfam:PF02895;locus_tag=Cj0284c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	262893	263198	.	-	.	ID=id-Cj0284c-6;Note=HMMPfam hit to PF01627%2C Hpt domain%2C score 5.4e-17;gbkey=misc_feature;gene=cheA;inference=protein motif:Pfam:PF01627;locus_tag=Cj0284c
gi|15791399|ref|NC_002163.1|	EMBL	gene	263217	264173	.	-	.	ID=gene-Cj0285c;Name=cheV;gbkey=Gene;gene=cheV;gene_biotype=protein_coding;locus_tag=Cj0285c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	263217	264173	.	-	0	ID=cds-CAL34438.1;Parent=gene-Cj0285c;Dbxref=EnsemblGenomes-Gn:Cj0285c,EnsemblGenomes-Tr:CAL34438,GOA:Q0PBM1,InterPro:IPR001789,InterPro:IPR002545,InterPro:IPR011006,InterPro:IPR024181,UniProtKB/TrEMBL:Q0PBM1,NCBI_GP:CAL34438.1;Name=CAL34438.1;Note=Original (2000) note: Cj0285c%2C cheV%2C probable chemotaxis protein cheV%2C len: 318 aa%3B similar to e.g. CHEV_BACSU chemotaxis cheV protein (EC 2.7.3.-) (303 aa)%2Cfasta scores%3B opt: 414 z-score: 344.9 E(): 5.9e-12%2C 28.2%25 identity in 309 aa overlap. 50.8%25 identity to HP0393. Contains Pfam match to entry PF00072 response_reg%2CResponse regulator receiver domain%2C score 50.70%2C E-value 3.1e-11%3B~Updated (2006) note: Pfam domain PF01584 CheW-like domain identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with marginal identity score. Putative not added to product function. Functional classification - Chemotaxis and mobility%3B~PMID:8169223%2C PMID:8169224;gbkey=CDS;gene=cheV;inference=protein motif:Pfam:PF01584;locus_tag=Cj0285c;product=chemotaxis protein;protein_id=CAL34438.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	263235	263630	.	-	.	ID=id-Cj0285c;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 4.1e-15;gbkey=misc_feature;gene=cheV;inference=protein motif:Pfam:PF00072;locus_tag=Cj0285c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	263682	264083	.	-	.	ID=id-Cj0285c-2;Note=HMMPfam hit to PF01584%2C CheW-like domain%2C score 1.6e-28;gbkey=misc_feature;gene=cheV;inference=protein motif:Pfam:PF01584;locus_tag=Cj0285c
gi|15791399|ref|NC_002163.1|	EMBL	gene	264166	264783	.	-	.	ID=gene-Cj0286c;Name=Cj0286c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0286c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	264166	264783	.	-	0	ID=cds-CAL34439.1;Parent=gene-Cj0286c;Dbxref=EnsemblGenomes-Gn:Cj0286c,EnsemblGenomes-Tr:CAL34439,InterPro:IPR029052,UniProtKB/TrEMBL:Q0PBM0,NCBI_GP:CAL34439.1;Name=CAL34439.1;Note=Original (2000) note: Cj0286c%2C unknown%2C len: 205 aa%3B 28.4%25 identity to HP0394 (252 aa). Functional classification - Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0286c;product=hypothetical protein Cj0286c;protein_id=CAL34439.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	264934	265419	.	-	.	ID=gene-Cj0287c;Name=greA;gbkey=Gene;gene=greA;gene_biotype=protein_coding;locus_tag=Cj0287c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	264934	265419	.	-	0	ID=cds-CAL34440.1;Parent=gene-Cj0287c;Dbxref=EnsemblGenomes-Gn:Cj0287c,EnsemblGenomes-Tr:CAL34440,GOA:Q9PIK9,InterPro:IPR001437,InterPro:IPR006359,InterPro:IPR018151,InterPro:IPR022691,InterPro:IPR023459,InterPro:IPR028624,NCBI_GP:CAL34440.1;Name=CAL34440.1;Note=Original (2000) note: Cj0287c%2C greA%2C probable transcription elongation factor%2C len: 161 aa%3B similar to many e.g. GREA_ECOLI transcription elongation factor greA (158 aa)%2C fasta scores%3B opt: 448 z-score: 810.6 E(): 0%2C43.9%25 identity in 157 aa overlap. 57.8%25 identity to HP0866. Contains PS00829 and PS00830 Prokaryotic transcription elongation factors signatures 1 and 2%2C and Pfam match to entry PF01272 GreA_GreB%2C Prokaryotic transcription elongation factor%2C GreA and GreB%2C score 262.10%2C E-value 7.6e-75%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:2243801%2C PMID:7854424;gbkey=CDS;gene=greA;inference=protein motif:Prosite:PS00830;locus_tag=Cj0287c;product=transcription elongation factor;protein_id=CAL34440.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	264952	265182	.	-	.	ID=id-Cj0287c;Note=HMMPfam hit to PF01272%2C Prokaryotic transcription elongation fact%2C score 3.2e-27;gbkey=misc_feature;gene=greA;inference=protein motif:Pfam:PF01272;locus_tag=Cj0287c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	265012	265062	.	-	.	ID=id-Cj0287c-2;Note=PS00830 Prokaryotic transcription elongation factors signature 2;gbkey=misc_feature;gene=greA;inference=protein motif:Prosite:PS00830;locus_tag=Cj0287c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	265198	265419	.	-	.	ID=id-Cj0287c-3;Note=HMMPfam hit to PF03449%2C Prokaryotic transcription elongation fact%2C score 1.4e-37;gbkey=misc_feature;gene=greA;inference=protein motif:Pfam:PF03449;locus_tag=Cj0287c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	265276	265401	.	-	.	ID=id-Cj0287c-4;Note=PS00829 Prokaryotic transcription elongation factors signature 1;gbkey=misc_feature;gene=greA;inference=protein motif:Prosite:PS00829;locus_tag=Cj0287c
gi|15791399|ref|NC_002163.1|	EMBL	gene	265431	266525	.	-	.	ID=gene-Cj0288c;Name=lpxB;gbkey=Gene;gene=lpxB;gene_biotype=protein_coding;locus_tag=Cj0288c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	265431	266525	.	-	0	ID=cds-CAL34441.1;Parent=gene-Cj0288c;Dbxref=EnsemblGenomes-Gn:Cj0288c,EnsemblGenomes-Tr:CAL34441,GOA:Q9PIK8,InterPro:IPR003835,NCBI_GP:CAL34441.1;Name=CAL34441.1;Note=Original (2000) note: Cj0288c%2C lpxB%2C probable lipid-A-disaccharide synthase%2C len: 364 aa%3B similar to e.g. LPXB_ECOLI lipid-A-disaccharide synthase (EC 2.4.1.182) (382 aa)%2C fasta scores%3B opt: 153 z-score: 432.6 E(): 7.7e-17%2C 27.7%25 identity in 343 aa overlap. 42.8%25 identity to HP0867%3B~Updated (2006) note: Pfam domain PF02684 Lipid-A-disaccharide synthetase identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:3316192%2C PMID:3531165;gbkey=CDS;gene=lpxB;inference=protein motif:Pfam:PF02684;locus_tag=Cj0288c;product=lipid-A-disaccharide synthase;protein_id=CAL34441.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	265452	266516	.	-	.	ID=id-Cj0288c;Note=HMMPfam hit to PF02684%2C Lipid-A-disaccharide synthetase%2C score 4.7e-81;gbkey=misc_feature;gene=lpxB;inference=protein motif:Pfam:PF02684;locus_tag=Cj0288c
gi|15791399|ref|NC_002163.1|	EMBL	gene	266622	267374	.	-	.	ID=gene-Cj0289c;Name=peb3;gbkey=Gene;gene=peb3;gene_biotype=protein_coding;locus_tag=Cj0289c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	266622	267374	.	-	0	ID=cds-CAL34442.1;Parent=gene-Cj0289c;Dbxref=EnsemblGenomes-Gn:Cj0289c,EnsemblGenomes-Tr:CAL34442,PDB:2HXW,PDB:3FIR,PDB:3FJ7,PDB:3FJG,PDB:3FJM,UniProtKB/TrEMBL:Q0PBL7,NCBI_GP:CAL34442.1;Name=CAL34442.1;Note=Original (2000) note: Cj0289c%2C peb3%2C major antigenic peptide PEB3%2C len: 250 aa%3B 94.9%25 identical to TR:G234575%2C sequenced by direct peptide sequencing%3B see: Pei at al. J. Biol. Chem. 266:16363-16369 (1991). Also similar to TR:Q57410 (EMBL:U39068) Vibrio cholerae accessory colonization factor acfC (253 aa)%2C fasta scores%3B opt: 855 z-score: 1301.2 E(): 0%2C 53.6%25 identity in 239 aa overlap and TR:P96759 (EMBL:U82533) anm (E. coli 045 attachment and effacement negative mutant) (251 aa)%2C fasta scores%3B opt: 849 z-score: 824.0 E(): 0%2C 51.8%25 identity in 251 aa overlap. No Hp match. Also similar to Cj0778 (peb2) (32.4%25 identity in 256 aa overlap). Contains N-terminal signal sequence%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Paper identified linking protein to glycoprotein (PMID:12186869). Functional classification -Miscellaneous periplasmic proteins%3B~PMID:1885571%2C PMID:12186869;gbkey=CDS;gene=peb3;locus_tag=Cj0289c;product=major antigenic peptide PEB3;protein_id=CAL34442.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	267638	268809	.	-	.	ID=gene-Cj0292c;Name=glpT;gbkey=Gene;gene=glpT;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0292c;part=1/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	267516	267629	.	-	.	ID=gene-Cj0292c;Name=glpT;gbkey=Gene;gene=glpT;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0292c;part=2/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	268591	268809	.	-	0	ID=cds-Cj0292c;Parent=gene-Cj0292c;Note=Original (2000) note: Cj0290c%2C probable pseudogene representing the C-terminus of Cj0291c (glpT')%3B~Original (2000) note: Cj0292c%2C probable pseudogene representing the N-terminus of Cj0291c (glpT')%3B~Original (2000) note: Cj0291c%2C glpT'%2Cglycerol-3-phosphate transporter%2C possible pseudogene%2Clen: 319 aa%3B similar to the central region of many e.g. GLPT_ECOLI glycerol-3-phosphate transporter (452 aa)%2Cfasta scores%3B opt: 473 z-score: 832.3 E(): 0%2C 35.3%25 identity in 323 aa overlap. No Hp match. Contains PS00942 glpT family of transporters signature. Note that the N-terminal 100 aa and the C-terminal 50 aa present in other glpT proteins are out of frame%2C and are represented by the CDSs Cj0292c and Cj0290c respectively. The sequence has been checked%2C and is believed to be correct%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Also%2Ctwelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Carbohydrates%2C organic acids and alcohols;gbkey=CDS;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;product=pseudogene (putative glycerol-3-phosphate transporter);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	267638	268597	.	-	0	ID=cds-Cj0292c;Parent=gene-Cj0292c;Note=Original (2000) note: Cj0290c%2C probable pseudogene representing the C-terminus of Cj0291c (glpT')%3B~Original (2000) note: Cj0292c%2C probable pseudogene representing the N-terminus of Cj0291c (glpT')%3B~Original (2000) note: Cj0291c%2C glpT'%2Cglycerol-3-phosphate transporter%2C possible pseudogene%2Clen: 319 aa%3B similar to the central region of many e.g. GLPT_ECOLI glycerol-3-phosphate transporter (452 aa)%2Cfasta scores%3B opt: 473 z-score: 832.3 E(): 0%2C 35.3%25 identity in 323 aa overlap. No Hp match. Contains PS00942 glpT family of transporters signature. Note that the N-terminal 100 aa and the C-terminal 50 aa present in other glpT proteins are out of frame%2C and are represented by the CDSs Cj0292c and Cj0290c respectively. The sequence has been checked%2C and is believed to be correct%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Also%2Ctwelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Carbohydrates%2C organic acids and alcohols;gbkey=CDS;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;product=pseudogene (putative glycerol-3-phosphate transporter);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	267516	267629	.	-	0	ID=cds-Cj0292c;Parent=gene-Cj0292c;Note=Original (2000) note: Cj0290c%2C probable pseudogene representing the C-terminus of Cj0291c (glpT')%3B~Original (2000) note: Cj0292c%2C probable pseudogene representing the N-terminus of Cj0291c (glpT')%3B~Original (2000) note: Cj0291c%2C glpT'%2Cglycerol-3-phosphate transporter%2C possible pseudogene%2Clen: 319 aa%3B similar to the central region of many e.g. GLPT_ECOLI glycerol-3-phosphate transporter (452 aa)%2Cfasta scores%3B opt: 473 z-score: 832.3 E(): 0%2C 35.3%25 identity in 323 aa overlap. No Hp match. Contains PS00942 glpT family of transporters signature. Note that the N-terminal 100 aa and the C-terminal 50 aa present in other glpT proteins are out of frame%2C and are represented by the CDSs Cj0292c and Cj0290c respectively. The sequence has been checked%2C and is believed to be correct%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Also%2Ctwelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Carbohydrates%2C organic acids and alcohols;gbkey=CDS;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;product=pseudogene (putative glycerol-3-phosphate transporter);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	267627	267629	.	-	.	ID=id-Cj0292c;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 1.8e-34;gbkey=misc_feature;gene=glpT;inference=protein motif:Pfam:PF07690;locus_tag=Cj0292c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	267638	268597	.	-	.	ID=id-Cj0292c;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 1.8e-34;gbkey=misc_feature;gene=glpT;inference=protein motif:Pfam:PF07690;locus_tag=Cj0292c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	268591	268785	.	-	.	ID=id-Cj0292c;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 1.8e-34;gbkey=misc_feature;gene=glpT;inference=protein motif:Pfam:PF07690;locus_tag=Cj0292c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	267540	267608	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=1/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	267659	267727	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=2/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	267740	267808	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=3/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	267821	267889	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=4/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	267908	267967	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=5/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	268010	268078	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=6/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	268232	268285	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=7/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	268328	268396	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=8/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	268457	268525	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=9/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	268591	268597	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=10/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	268535	268597	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=11/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	268621	268689	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=12/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	268717	268785	.	-	.	ID=id-Cj0292c-2;Note=12 probable transmembrane helices predicted for Cj0292c by TMHMM2.0 at aa 9-31%2C 41-63%2C 72-94%2C 98-120%2C141-163%2C 178-195%2C 247-269%2C 284-303%2C 310-332%2C 337-359%2C364-386 and 401-423;gbkey=misc_feature;gene=glpT;inference=protein motif:TMHMM:2.0;locus_tag=Cj0292c;part=13/13
gi|15791399|ref|NC_002163.1|	EMBL	gene	269064	269840	.	+	.	ID=gene-Cj0293;Name=surE;gbkey=Gene;gene=surE;gene_biotype=protein_coding;locus_tag=Cj0293
gi|15791399|ref|NC_002163.1|	EMBL	CDS	269064	269840	.	+	0	ID=cds-CAL34444.1;Parent=gene-Cj0293;Dbxref=EnsemblGenomes-Gn:Cj0293,EnsemblGenomes-Tr:CAL34444,GOA:Q9PIK6,InterPro:IPR002828,NCBI_GP:CAL34444.1;Name=CAL34444.1;Note=Original (2000) note: Cj0293%2C surE%2C SurE protein homolog%2C len: 258 aa%3B similar to e.g. SURE_ECOLI survival protein surE (253 aa)%2C fasta scores%3B opt: 515 z-score: 776.1 E(): 0%2C 37.4%25 identity in 254 aa overlap. 46.0%25 identity to HP0930%3B~Updated (2006) note: Pfam domain PF01975 Survival protein SurE identified within CDS. Further support given to product function. Characterisation work carried out within Escherichia coli with acceptable identity score. Product function modified based on characterisation paper (PMID:15489502). Functional classification - Adaptions and atypical conditions%3B~PMID:15489502;gbkey=CDS;gene=surE;inference=protein motif:Pfam:PF01975;locus_tag=Cj0293;product=multifunctional protein SurE homolog;protein_id=CAL34444.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	269067	269645	.	+	.	ID=id-Cj0293;Note=HMMPfam hit to PF01975%2C Survival protein SurE%2Cscore 3.9e-78;gbkey=misc_feature;gene=surE;inference=protein motif:Pfam:PF01975;locus_tag=Cj0293
gi|15791399|ref|NC_002163.1|	EMBL	gene	269830	270489	.	+	.	ID=gene-Cj0294;Name=Cj0294;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0294
gi|15791399|ref|NC_002163.1|	EMBL	CDS	269830	270489	.	+	0	ID=cds-CAL34445.1;Parent=gene-Cj0294;Dbxref=EnsemblGenomes-Gn:Cj0294,EnsemblGenomes-Tr:CAL34445,GOA:Q0PBL5,InterPro:IPR000594,InterPro:IPR009036,InterPro:IPR016040,UniProtKB/TrEMBL:Q0PBL5,NCBI_GP:CAL34445.1;Name=CAL34445.1;Note=Original (2000) note: Cj0294%2C unknown%2C len: 219 aa%3B similar to members of the hesA/moeB/thiF family%2C e.g. YGDL_ECOLI (268 aa)%2C fasta scores%3B opt: 219 z-score: 563.3 E(): 4e-24%2C 33.5%25 identity in 254 aa overlap. 48.3%25 identity to HP0755 (described as moeB). Contains Pfam match to entry PF00899 ThiF_family%2C ThiF family%2C score 33.10%2C E-value 2e-07. Also similar to Cj1046c (33.6%25 identity in 146 aa overlap)%3B~Updated (2006) note: No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Pfam:PF00899;locus_tag=Cj0294;product=putative MoeB/ThiF family protein;protein_id=CAL34445.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	269893	270273	.	+	.	ID=id-Cj0294;Note=HMMPfam hit to PF00899%2C ThiF family%2C score 1.3e-09;gbkey=misc_feature;inference=protein motif:Pfam:PF00899;locus_tag=Cj0294
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	269905	269958	.	+	.	ID=id-Cj0294-2;Note=1 probable transmembrane helix predicted for Cj0294 by TMHMM2.0 at aa 26-43;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0294
gi|15791399|ref|NC_002163.1|	EMBL	gene	270473	270931	.	+	.	ID=gene-Cj0295;Name=Cj0295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0295
gi|15791399|ref|NC_002163.1|	EMBL	CDS	270473	270931	.	+	0	ID=cds-CAL34446.1;Parent=gene-Cj0295;Dbxref=EnsemblGenomes-Gn:Cj0295,EnsemblGenomes-Tr:CAL34446,GOA:Q0PBL4,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q0PBL4,NCBI_GP:CAL34446.1;Name=CAL34446.1;Note=Original (2000) note: Cj0295%2C possible acetyltransferase%2C len: 152 aa%3B similar to hypothetical proteins e.g. YAFP_ECOLI (150 aa)%2C fasta scores%3B opt: 246 z-score: 340.4 E(): 1.1e-11%2C 27.8%25 identity in 144 aa overlap. No Hp match. Contains Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family%2C score 20.20%2C E-value 0.011%3B~Updated (2006) note: Some characterisation within Escherichia coli with marginal identity score. Putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Pfam:PF00583;locus_tag=Cj0295;product=putative acetyltransferase;protein_id=CAL34446.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	270635	270847	.	+	.	ID=id-Cj0295;Note=HMMPfam hit to PF00583%2C Acetyltransferase (GNAT) family%2C score 1.2e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF00583;locus_tag=Cj0295
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	270978	271021	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:270978..271021;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	271041	271421	.	-	.	ID=gene-Cj0296c;Name=panD;gbkey=Gene;gene=panD;gene_biotype=protein_coding;locus_tag=Cj0296c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	271041	271421	.	-	0	ID=cds-CAL34447.1;Parent=gene-Cj0296c;Dbxref=EnsemblGenomes-Gn:Cj0296c,EnsemblGenomes-Tr:CAL34447,GOA:Q9PIK3,InterPro:IPR003190,InterPro:IPR009010,PDB:3PLX,NCBI_GP:CAL34447.1;Name=CAL34447.1;Note=Original (2000) note: Cj0296c%2C panD%2C probable aspartate 1-decarboxylase precursor%2C len: 126 aa%3B similar to many e.g. PAND_ECOLI aspartate 1-decarboxylase precursor (EC 4.1.1.11) (126 aa)%2C fasta scores%3B opt: 317 z-score: 486.9 E(): 7.3e-20%2C 48.2%25 identity in 110 aa overlap. 52.3%25 identity to HP0034%3B~Updated (2006) note: Pfam domain PF02261 Aspartate decarboxylase was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Pantothenate%3B~PMID:14633979%2C PMID:8837478;gbkey=CDS;gene=panD;inference=protein motif:Pfam:PF02261;locus_tag=Cj0296c;product=aspartate 1-decarboxylase precursor;protein_id=CAL34447.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	271077	271421	.	-	.	ID=id-Cj0296c;Note=HMMPfam hit to PF02261%2C Aspartate decarboxylase%2Cscore 1.5e-61;gbkey=misc_feature;gene=panD;inference=protein motif:Pfam:PF02261;locus_tag=Cj0296c
gi|15791399|ref|NC_002163.1|	EMBL	gene	271418	272266	.	-	.	ID=gene-Cj0297c;Name=panC;gbkey=Gene;gene=panC;gene_biotype=protein_coding;locus_tag=Cj0297c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	271418	272266	.	-	0	ID=cds-CAL34448.1;Parent=gene-Cj0297c;Dbxref=EnsemblGenomes-Gn:Cj0297c,EnsemblGenomes-Tr:CAL34448,GOA:Q9PIK2,InterPro:IPR003721,InterPro:IPR014729,PDB:3MXT,PDB:3UY4,NCBI_GP:CAL34448.1;Name=CAL34448.1;Note=Original (2000) note: Cj0297c%2C panC%2C probable pantoate--beta-alanine ligase%2C len: 282 aa%3B similar to many e.g. PANC_ECOLI pantoate--beta-alanine ligase (EC 6.3.2.1) (283 aa)%2C fasta scores%3B opt: 688 z-score: 1023.1 E(): 0%2C 41.0%25 identity in 283 aa overlap. 42.9%25 identity to HP0006%3B~Updated (2006) note: Pfam domain PF02569 Pantoate-beta-alanine ligase was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Pantothenate%3B~PMID:11377204%2C PMID:8837478;gbkey=CDS;gene=panC;inference=protein motif:Pfam:PF02569;locus_tag=Cj0297c;product=pantoate--beta-alanine ligase;protein_id=CAL34448.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	271433	272266	.	-	.	ID=id-Cj0297c;Note=HMMPfam hit to PF02569%2C Pantoate-beta-alanine ligase%2C score 4.1e-137;gbkey=misc_feature;gene=panC;inference=protein motif:Pfam:PF02569;locus_tag=Cj0297c
gi|15791399|ref|NC_002163.1|	EMBL	gene	272277	273101	.	-	.	ID=gene-Cj0298c;Name=panB;gbkey=Gene;gene=panB;gene_biotype=protein_coding;locus_tag=Cj0298c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	272277	273101	.	-	0	ID=cds-CAL34449.1;Parent=gene-Cj0298c;Dbxref=EnsemblGenomes-Gn:Cj0298c,EnsemblGenomes-Tr:CAL34449,GOA:Q9PIK1,InterPro:IPR003700,InterPro:IPR015813,NCBI_GP:CAL34449.1;Name=CAL34449.1;Note=Original (2000) note: Cj0298c%2C panB%2C probable 3-methyl-2-oxobutanoate hydroxymethyltransferase%2C len: 274 aa%3B similar to many e.g. PANB_ECOLI 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC 2.1.2.11) (264 aa)%2C fasta scores%3B opt: 752 z-score: 1038.6 E(): 0%2C 43.0%25 identity in 265 aa overlap. 43.9%25 identity to HP1058%3B~Updated (2006) note: Pfam domain PF02548 Ketopantoate hydroxymethyltransferase was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Pantothenate%3B~PMID:8096212%2C PMID:8837478;gbkey=CDS;gene=panB;inference=protein motif:Pfam:PF02548;locus_tag=Cj0298c;product=3-methyl-2-oxobutanoate hydroxymethyltransferase;protein_id=CAL34449.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	272325	273098	.	-	.	ID=id-Cj0298c;Note=HMMPfam hit to PF02548%2C Ketopantoate hydroxymethyltransferase%2C score 8.3e-137;gbkey=misc_feature;gene=panB;inference=protein motif:Pfam:PF02548;locus_tag=Cj0298c
gi|15791399|ref|NC_002163.1|	EMBL	gene	273321	274094	.	+	.	ID=gene-Cj0299;Name=Cj0299;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0299
gi|15791399|ref|NC_002163.1|	EMBL	CDS	273321	274094	.	+	0	ID=cds-CAL34450.1;Parent=gene-Cj0299;Dbxref=EnsemblGenomes-Gn:Cj0299,EnsemblGenomes-Tr:CAL34450,GOA:Q0PBL0,InterPro:IPR001460,InterPro:IPR012338,UniProtKB/TrEMBL:Q0PBL0,NCBI_GP:CAL34450.1;Name=CAL34450.1;Note=Original (2000) note: Cj0299%2C possible periplasmic beta-lactamase%2C len: 257 aa%3B similar to members of the class-D beta-lactamase family e.g. BLL1_PSEAE BETA-LACTAMASE LCR-1 PRECURSOR (EC 3.5.2.6) (Pseudomonas aeruginosa plasmid PMG76) (260 aa)%2C fasta scores%3B opt: 423 z-score: 305.2 E(): 9.6e-10%2C 33.7%25 identity in 255 aa overlap. No Hp match. Contains N-terminal signal sequence%3B~Updated (2006) note: Some characterisation work within Pseudomonas aeruginosa and Escherichia coli with marginal identity scores. Putative kept within product function. Functional classification - Antibiotic resistance%3B~PMID:11188693%2C PMID:7574536;gbkey=CDS;locus_tag=Cj0299;product=putative periplasmic beta-lactamase;protein_id=CAL34450.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	273414	274061	.	+	.	ID=id-Cj0299;Note=HMMPfam hit to PF00905%2C Penicillin binding protein transpeptid%2C score 1.3e-33;gbkey=misc_feature;inference=protein motif:Pfam:PF00905;locus_tag=Cj0299
gi|15791399|ref|NC_002163.1|	EMBL	gene	274179	275063	.	-	.	ID=gene-Cj0300c;Name=modC;gbkey=Gene;gene=modC;gene_biotype=protein_coding;locus_tag=Cj0300c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	274179	275063	.	-	0	ID=cds-CAL34451.1;Parent=gene-Cj0300c;Dbxref=EnsemblGenomes-Gn:Cj0300c,EnsemblGenomes-Tr:CAL34451,GOA:Q0PBK9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PBK9,NCBI_GP:CAL34451.1;Name=CAL34451.1;Note=Original (2000) note: Cj0300c%2C modC%2C probable molybdenum transport ATP-binding protein%2C len: 294 aa%3B similar to many ABC-transporter ATP binding proteins%2C and to MODC_ECOLI molybdenum transport ATP-binding protein (352 aa)%2C fasta scores%3B opt: 487 z-score: 700.9 E(): 8.7e-32%2C 34.8%25 identity in 270 aa overlap. Identification as modC is based on presence of probable molybdenum-specific permease and periplasmic binding proteins upstream. 46.8%25 identity to HP0475. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%2C score 214.40%2C E-value 1.7e-60%3B~Updated (2006) note: Characterised more than once within Escherichia coli with marginal identity scores. Putative kept within product function. Functional classification - Transport/binding proteins - Anions%3B~PMID:2188958%2C PMID:7665461%2C PMID:7665460;gbkey=CDS;gene=modC;inference=protein motif:Prosite:PS00211;locus_tag=Cj0300c;product=putative molybdenum transport ATP-binding protein;protein_id=CAL34451.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	274443	274982	.	-	.	ID=id-Cj0300c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 6e-62;gbkey=misc_feature;gene=modC;inference=protein motif:Pfam:PF00005;locus_tag=Cj0300c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	274629	274673	.	-	.	ID=id-Cj0300c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=modC;inference=protein motif:Prosite:PS00211;locus_tag=Cj0300c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	274938	274961	.	-	.	ID=id-Cj0300c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=modC;inference=protein motif:Prosite:PS00017;locus_tag=Cj0300c
gi|15791399|ref|NC_002163.1|	EMBL	gene	275060	275734	.	-	.	ID=gene-Cj0301c;Name=modB;gbkey=Gene;gene=modB;gene_biotype=protein_coding;locus_tag=Cj0301c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	275060	275734	.	-	0	ID=cds-CAL34452.1;Parent=gene-Cj0301c;Dbxref=EnsemblGenomes-Gn:Cj0301c,EnsemblGenomes-Tr:CAL34452,GOA:Q0PBK8,InterPro:IPR000515,InterPro:IPR011867,UniProtKB/TrEMBL:Q0PBK8,NCBI_GP:CAL34452.1;Name=CAL34452.1;Note=Original (2000) note: Cj0301c%2C modB%2C probable molybdenum transport system permease protein%2C len: 224 aa%3B similar to e.g. MODC_AZOVI molybdenum transport system permease protein (226 aa)%2C fasta scores%3B opt: 562 z-score: 889.7 E(): 0%2C 43.3%25 identity in 210 aa overlap and MODB_ECOLI (229 aa)%2C fasta scores%3B opt: 390 z-score: 537.4 E(): 1.1e-22%2C 32.8%25 identity in 183 aa overlap. 55.2%25 identity to HP0474. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%2C score 43.10%2C E-value 6.1e-09%3B~Updated (2006) note: Characterised in many e.g. Rhodobacter capsulatus and Azotobacter vinelandii with acceptable identity scores. Putative kept within product function. Functional classification - Transport/binding proteins - Anions%3B~PMID:8384683%2C PMID:8491722;gbkey=CDS;gene=modB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0301c;product=putative molybdenum transport system permease protein;protein_id=CAL34452.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	275084	275152	.	-	.	ID=id-Cj0301c;Note=5 probable transmembrane helices predicted for Cj0301c by TMHMM2.0 at aa 15-37%2C 49-71%2C 86-108%2C 147-169 and 195-217;gbkey=misc_feature;gene=modB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0301c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	275228	275296	.	-	.	ID=id-Cj0301c;Note=5 probable transmembrane helices predicted for Cj0301c by TMHMM2.0 at aa 15-37%2C 49-71%2C 86-108%2C 147-169 and 195-217;gbkey=misc_feature;gene=modB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0301c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	275411	275479	.	-	.	ID=id-Cj0301c;Note=5 probable transmembrane helices predicted for Cj0301c by TMHMM2.0 at aa 15-37%2C 49-71%2C 86-108%2C 147-169 and 195-217;gbkey=misc_feature;gene=modB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0301c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	275522	275590	.	-	.	ID=id-Cj0301c;Note=5 probable transmembrane helices predicted for Cj0301c by TMHMM2.0 at aa 15-37%2C 49-71%2C 86-108%2C 147-169 and 195-217;gbkey=misc_feature;gene=modB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0301c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	275624	275692	.	-	.	ID=id-Cj0301c;Note=5 probable transmembrane helices predicted for Cj0301c by TMHMM2.0 at aa 15-37%2C 49-71%2C 86-108%2C 147-169 and 195-217;gbkey=misc_feature;gene=modB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0301c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	275066	275719	.	-	.	ID=id-Cj0301c-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 8.6e-19;gbkey=misc_feature;gene=modB;inference=protein motif:Pfam:PF00528;locus_tag=Cj0301c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	275342	275365	.	-	.	ID=id-Cj0301c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=modB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0301c
gi|15791399|ref|NC_002163.1|	EMBL	gene	275727	276128	.	-	.	ID=gene-Cj0302c;Name=Cj0302c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0302c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	275727	276128	.	-	0	ID=cds-CAL34453.1;Parent=gene-Cj0302c;Dbxref=EnsemblGenomes-Gn:Cj0302c,EnsemblGenomes-Tr:CAL34453,InterPro:IPR008995,UniProtKB/TrEMBL:Q0PBK7,NCBI_GP:CAL34453.1;Name=CAL34453.1;Note=Original (2000) note: Cj0302c%2C unknonw%2C len: 133 aa%3B no Hp match%3B~Updated (2006) note: Pfam domain PF03459 TOBE domain identified within CDS. TOBE (Transport-associated OB) has had work carried out within Esherichia coli where it has been shown to be involved in the recognition of small ligands such as molybdenum. TOBE has been found in ABC transporters immediately after the ATPase domain. A child process of this family is Molybdenum-pterin binding protein. Product modified to more specific family member based on motif match. Some characterisation work within Clostridium pasteurianum%2C however%2C identity scores were marginal and full length sequence alignment was not achieved. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:3540853%2C PMID:2820842;gbkey=CDS;inference=protein motif:Pfam:PF03459;locus_tag=Cj0302c;product=putative molybdenum-pterin binding protein;protein_id=CAL34453.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	275745	275933	.	-	.	ID=id-Cj0302c;Note=HMMPfam hit to PF03459%2C TOBE domain%2C score 4.6e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF03459;locus_tag=Cj0302c
gi|15791399|ref|NC_002163.1|	EMBL	gene	276125	276874	.	-	.	ID=gene-Cj0303c;Name=modA;gbkey=Gene;gene=modA;gene_biotype=protein_coding;locus_tag=Cj0303c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	276125	276874	.	-	0	ID=cds-CAL34454.1;Parent=gene-Cj0303c;Dbxref=EnsemblGenomes-Gn:Cj0303c,EnsemblGenomes-Tr:CAL34454,GOA:Q0PBK6,InterPro:IPR005950,UniProtKB/TrEMBL:Q0PBK6,NCBI_GP:CAL34454.1;Name=CAL34454.1;Note=Original (2000) note: Cj0303c%2C modA%2C probable molybdate-binding lipoprotein%2C len: 249 aa%3B similar to e.g. MODA_RHOCA molybdate-binding periplasmic protein precursor (252 aa)%2C fasta scores%3B opt: 354 z-score: 449.0 E(): 9.4e-18%2C 30.8%25 identity in 224 aa overlap%2C and MODA_ECOLI (257 aa)%2C fasta scores%3B opt: 220 z-score: 245.4 E(): 2.1e-06%2C 25.0%25 identity in 232 aa overlap. 42.3%25 identity to HP0473. Contains probable N-terminal signal sequence with appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domain PF01547 Bacterial extracellular solute-binding protein was identified within CDS. Further support given to product function. Characterised in more than one genus e.g. Rhodobacter capsulatus%2C Azotobacter vinelandii and Escherichia coli. Identity scores were marginal and sequence alignment was not full length. Putative kept within product function. Functional classification - Transport/binding proteins -Anions%3B~PMID:8491722%2C PMID:8384683%2C PMID:8564363;gbkey=CDS;gene=modA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0303c;product=putative molybdate-binding lipoprotein;protein_id=CAL34454.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	276158	276865	.	-	.	ID=id-Cj0303c;Note=HMMPfam hit to PF01547%2C Bacterial extracellular solute-binding prot%2C score 4.2e-13;gbkey=misc_feature;gene=modA;inference=protein motif:Pfam:PF01547;locus_tag=Cj0303c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	276794	276862	.	-	.	ID=id-Cj0303c-2;Note=1 probable transmembrane helix predicted for Cj0303c by TMHMM2.0 at aa 5-27;gbkey=misc_feature;gene=modA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0303c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	276827	276859	.	-	.	ID=id-Cj0303c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=modA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0303c
gi|15791399|ref|NC_002163.1|	EMBL	gene	276925	277611	.	-	.	ID=gene-Cj0304c;Name=bioC;gbkey=Gene;gene=bioC;gene_biotype=protein_coding;locus_tag=Cj0304c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	276925	277611	.	-	0	ID=cds-CAL34455.1;Parent=gene-Cj0304c;Dbxref=EnsemblGenomes-Gn:Cj0304c,EnsemblGenomes-Tr:CAL34455,GOA:Q0PBK5,InterPro:IPR011814,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PBK5,NCBI_GP:CAL34455.1;Name=CAL34455.1;Note=Original (2000) note: Cj0304c%2C bioC%2C possible biotin synthesis protein%2C len: 228 aa%3B similar to BIOC_HAEIN putative biotin synthesis protein bioC (260 aa)%2C fasta scores%3B opt: 342 z-score: 595.7 E(): 6.4e-26%2C34.0%25 identity in 238 aa overlap. Also some similarity to BIOC_ECOLI (251 aa)%2C wublastp scores%3B E%3D 0.00028%2C 24%25 identity in 193 aa overlap. No Hp match%3B~Updated (2006) note: Some characterisation within Bacillus subtilis and Escherichia coli%2C however%2C identity scores were unnacceptable. Putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Biotin%3B~PMID:3058702%2C PMID:8763940;gbkey=CDS;gene=bioC;locus_tag=Cj0304c;product=putative biotin synthesis protein;protein_id=CAL34455.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	277608	278219	.	-	.	ID=gene-Cj0305c;Name=Cj0305c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0305c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	277608	278219	.	-	0	ID=cds-CAL34456.1;Parent=gene-Cj0305c;Dbxref=EnsemblGenomes-Gn:Cj0305c,EnsemblGenomes-Tr:CAL34456,InterPro:IPR007398,UniProtKB/TrEMBL:Q0PBK4,NCBI_GP:CAL34456.1;Name=CAL34456.1;Note=Original (2000) note: Cj0305c%2C unknown%2C len: 203 aa%3B similar to a hypothetical protein from H. infuenzae YF52_HAEIN HI1552 (215 aa)%2C fasta scores%3B opt: 297 z-score: 372.7 E(): 1.7e-13%2C 29.8%25 identity in 215 aa overlap. No Hp match%3B~Updated (2006) note: Pfam PF04301%2C Protein of unknown function (DUF452) was present within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF04301;locus_tag=Cj0305c;product=conserved hypothetical protein Cj0305c;protein_id=CAL34456.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	277611	278219	.	-	.	ID=id-Cj0305c;Note=HMMPfam hit to PF04301%2C Protein of unknown function (DUF452)%2C score 2.5e-153;gbkey=misc_feature;inference=protein motif:Pfam:PF04301;locus_tag=Cj0305c
gi|15791399|ref|NC_002163.1|	EMBL	gene	278216	279358	.	-	.	ID=gene-Cj0306c;Name=bioF;gbkey=Gene;gene=bioF;gene_biotype=protein_coding;locus_tag=Cj0306c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	278216	279358	.	-	0	ID=cds-CAL34457.1;Parent=gene-Cj0306c;Dbxref=EnsemblGenomes-Gn:Cj0306c,EnsemblGenomes-Tr:CAL34457,GOA:Q0PBK3,InterPro:IPR001917,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0PBK3,NCBI_GP:CAL34457.1;Name=CAL34457.1;Note=Original (2000) note: Cj0306c%2C bioF%2C probable 8-amino-7-oxononanoate synthase%2C len: 380 aa%3B similar to many e.g. BIOF_ECOLI 8-amino-7-oxononanoate synthase (EC 2.3.1.47) (384 aa)%2C fasta scores%3B opt: 525 z-score: 550.3 E(): 2.1e-23%2C 28.9%25 identity in 387 aa overlap. 29.0%25 identity to HP0598. Contains PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site and Pfam match to entry PF00222 aminotran_2%2C Aminotransferases class-II%2C score 196.30%2C E-value 4.7e-55%3B~Updated (2006) note: Characterised within Escherichia coli with marginal identity scores. Putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Biotin%3B~PMID:9813126%2C PMID:1575677%2C PMID:1575677%2CPMID:3058702;gbkey=CDS;gene=bioF;inference=protein motif:Prosite:PS00599;locus_tag=Cj0306c;product=8-amino-7-oxononanoate synthase;protein_id=CAL34457.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	278219	279097	.	-	.	ID=id-Cj0306c;Note=HMMPfam hit to PF00155%2C Aminotransferase class I and II%2C score 2e-07;gbkey=misc_feature;gene=bioF;inference=protein motif:Pfam:PF00155;locus_tag=Cj0306c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	278624	278653	.	-	.	ID=id-Cj0306c-2;Note=PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=bioF;inference=protein motif:Prosite:PS00599;locus_tag=Cj0306c
gi|15791399|ref|NC_002163.1|	EMBL	gene	279426	280709	.	+	.	ID=gene-Cj0307;Name=bioA;gbkey=Gene;gene=bioA;gene_biotype=protein_coding;locus_tag=Cj0307
gi|15791399|ref|NC_002163.1|	EMBL	CDS	279426	280709	.	+	0	ID=cds-CAL34458.1;Parent=gene-Cj0307;Dbxref=EnsemblGenomes-Gn:Cj0307,EnsemblGenomes-Tr:CAL34458,GOA:Q0PBK2,InterPro:IPR005814,InterPro:IPR005815,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0PBK2,NCBI_GP:CAL34458.1;Name=CAL34458.1;Note=Original (2000) note: Cj0307%2C bioA%2C probable adenosylmethionine-8-amino-7-oxononanoate aminotransferase%2C len: 427 aa%3B similar to many e.g. BIOA_ECOLI adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) (429 aa)%2C fasta scores%3B opt: 882 z-score: 1095.3 E(): 0%2C 35.8%25 identity in 411 aa overlap. 57.8%25 identity to HP0976. Contains PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site and Pfam match to entry PF00202 aminotran_3%2CAminotransferases class-III pyridoxal-phosphate%2C score 383.00%2C E-value 1.1e-132%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Biotin%3B~PMID:3058702%2C PMID:10452893;gbkey=CDS;gene=bioA;inference=protein motif:Prosite:PS00600;locus_tag=Cj0307;product=adenosylmethionine-8-amino-7-oxononanoate aminotransferase;protein_id=CAL34458.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	279480	280706	.	+	.	ID=id-Cj0307;Note=HMMPfam hit to PF00202%2C Aminotransferase class-III%2Cscore 4.3e-127;gbkey=misc_feature;gene=bioA;inference=protein motif:Pfam:PF00202;locus_tag=Cj0307
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	280143	280256	.	+	.	ID=id-Cj0307-2;Note=PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=bioA;inference=protein motif:Prosite:PS00600;locus_tag=Cj0307
gi|15791399|ref|NC_002163.1|	EMBL	gene	280696	281301	.	-	.	ID=gene-Cj0308c;Name=bioD;gbkey=Gene;gene=bioD;gene_biotype=protein_coding;locus_tag=Cj0308c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	280696	281301	.	-	0	ID=cds-CAL34459.1;Parent=gene-Cj0308c;Dbxref=EnsemblGenomes-Gn:Cj0308c,EnsemblGenomes-Tr:CAL34459,GOA:Q9PIJ1,InterPro:IPR004472,InterPro:IPR027417,NCBI_GP:CAL34459.1;Name=CAL34459.1;Note=Original (2000) note: Cj0308c%2C bioD%2C possible dethiobiotin synthetase%2C len: 201 aa%3B some similarity to many e.g. BIOD_BACSH dethiobiotin synthetase (EC 6.3.3.3) (234 aa)%2C fasta scores%3B opt: 206 z-score: 260.4 E(): 3e-07%2C 29.8%25 identity in 215 aa overlap. 31.8%25 identity in 66 aa overlap to HP0029%3B~Updated (2006) note: Some characterisation within Bacillus sphaericus%2C however%2C identity score was marginal. Putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Biotin%3B~PMID:2110099%2C PMID:3058702%2C PMID:10455485;gbkey=CDS;gene=bioD;locus_tag=Cj0308c;product=putative dethiobiotin synthetase;protein_id=CAL34459.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	281311	281625	.	-	.	ID=gene-Cj0309c;Name=Cj0309c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0309c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	281311	281625	.	-	0	ID=cds-CAL34460.1;Parent=gene-Cj0309c;Dbxref=EnsemblGenomes-Gn:Cj0309c,EnsemblGenomes-Tr:CAL34460,GOA:Q0PBK0,InterPro:IPR000390,UniProtKB/TrEMBL:Q0PBK0,NCBI_GP:CAL34460.1;Name=CAL34460.1;Note=Original (2000) note: Cj0309c%2C probable efflux protein%2C len: 104 aa%3B similar to many membrane protein of known and unknown function e.g. TR:O34690 (EMBL:AJ002571) Bacillus subtilis YKKD (105 aa)%2C fasta scores%3B opt: 303 z-score: 547.1 E(): 3.2e-23%2C 44.2%25 identity in 104 aa overlap%2C and EBR_STAAU ethidium bromide resistance protein (multidrug resistance protein) (107 aa)%2C fasta scores%3B opt: 187 z-score: 272.5 E(): 6.4e-08%2C 27.2%25 identity in 103 aa overlap. No Hp match. Also similar to upstream CDS Cj0310c (32.4%25 identity in 105 aa overlap)%2C and to Cj1174 (28.7%25 identity in 94 aa overlap) and Cj1173 (24.7%25 identity in 93 aa overlap). Contains Pfam match to entry PF00893 DUF7%2C Integral membrane protein%2C score 109.20%2CE-value 7.7e-29%2C and four possible transmembrane domains%3B~Updated (2006) note: Pfam domain PF00893 Small Multidrug Resistance (Smr) protein identified within CDS. Previously this was an uncharacterised Pfam domain. Smr proteins are a family of efflux proteins that confer resistance to a wide range of toxic compounds by removing them from the cells. Further support given to product function. Putative kept within product function. Functional classification - Drug/analogue sensitivity%3B~PMID:10735877%2C PMID:11566977;gbkey=CDS;inference=protein motif:Pfam:PF00893;locus_tag=Cj0309c;product=putative efflux protein;protein_id=CAL34460.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	281317	281376	.	-	.	ID=id-Cj0309c;Note=4 probable transmembrane helices predicted for Cj0309c by TMHMM2.0 at aa 3-20%2C 30-49%2C 56-78 and 84-103;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0309c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	281392	281460	.	-	.	ID=id-Cj0309c;Note=4 probable transmembrane helices predicted for Cj0309c by TMHMM2.0 at aa 3-20%2C 30-49%2C 56-78 and 84-103;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0309c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	281479	281538	.	-	.	ID=id-Cj0309c;Note=4 probable transmembrane helices predicted for Cj0309c by TMHMM2.0 at aa 3-20%2C 30-49%2C 56-78 and 84-103;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0309c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	281566	281619	.	-	.	ID=id-Cj0309c;Note=4 probable transmembrane helices predicted for Cj0309c by TMHMM2.0 at aa 3-20%2C 30-49%2C 56-78 and 84-103;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0309c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	281347	281625	.	-	.	ID=id-Cj0309c-2;Note=HMMPfam hit to PF00893%2C Small Multidrug Resistance protein%2C score 4.2e-30;gbkey=misc_feature;inference=protein motif:Pfam:PF00893;locus_tag=Cj0309c
gi|15791399|ref|NC_002163.1|	EMBL	gene	281629	281967	.	-	.	ID=gene-Cj0310c;Name=Cj0310c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0310c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	281629	281967	.	-	0	ID=cds-CAL34461.1;Parent=gene-Cj0310c;Dbxref=EnsemblGenomes-Gn:Cj0310c,EnsemblGenomes-Tr:CAL34461,GOA:Q0PBJ9,InterPro:IPR000390,UniProtKB/TrEMBL:Q0PBJ9,NCBI_GP:CAL34461.1;Name=CAL34461.1;Note=Original (2000) note: Cj0310c%2C possible efflux protein%2C len: 104 aa%3B similar to many membrane proteins of known and unknown function e.g. YKKC_BACSU (112 aa)%2C fasta scores%3B opt: 273 z-score: 458.2 E(): 2.9e-18%2C 40.8%25 identity in 103 aa overlap%2C and EBR_STAAU ethidium bromide resistance protein (107 aa)%2C fasta scores%3B opt: 135 z-score: 198.9 E(): 0.00088%2C 27.4%25 identity in 84 aa overlap. No Hp match. Also similar to downstream CDS Cj0309c (32.4%25 identity in 105 aa overlap) and to Cj1173 (27.1%25 identity in 107 aa overlap). Contains Pfam match to entry PF00893 DUF7%2C Integral membrane protein%2C score 51.40%2C E-value 2e-11%2C and four possible transmembrane domains%3B~Updated (2006) note: Pfam domain PF00893 Small Multidrug Resistance (Smr family) protein identified within CDS. Previously this was an uncharacterised Pfam domain. Smr proteins are a family of efflux proteins that confer resistance to a wide range of toxic compounds by removing them from the cells. Further support given to product function. Putative kept within product function. Functional classification - Drug/analogue sensitivity%3B~PMID:10735877%2C PMID:11948170;gbkey=CDS;inference=protein motif:Pfam:PF00893;locus_tag=Cj0310c;product=putative efflux protein;protein_id=CAL34461.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	281644	281712	.	-	.	ID=id-Cj0310c;Note=4 probable transmembrane helices predicted for Cj0310c by TMHMM2.0 at aa 7-28%2C 33-55%2C 60-82 and 86-108;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0310c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	281722	281790	.	-	.	ID=id-Cj0310c;Note=4 probable transmembrane helices predicted for Cj0310c by TMHMM2.0 at aa 7-28%2C 33-55%2C 60-82 and 86-108;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0310c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	281803	281871	.	-	.	ID=id-Cj0310c;Note=4 probable transmembrane helices predicted for Cj0310c by TMHMM2.0 at aa 7-28%2C 33-55%2C 60-82 and 86-108;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0310c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	281884	281949	.	-	.	ID=id-Cj0310c;Note=4 probable transmembrane helices predicted for Cj0310c by TMHMM2.0 at aa 7-28%2C 33-55%2C 60-82 and 86-108;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0310c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	281674	281943	.	-	.	ID=id-Cj0310c-2;Note=HMMPfam hit to PF00893%2C Small Multidrug Resistance protein%2C score 1.3e-12;gbkey=misc_feature;inference=protein motif:Pfam:PF00893;locus_tag=Cj0310c
gi|15791399|ref|NC_002163.1|	EMBL	gene	282101	282637	.	+	.	ID=gene-Cj0311;Name=rplY;gbkey=Gene;gene=rplY;gene_biotype=protein_coding;locus_tag=Cj0311
gi|15791399|ref|NC_002163.1|	EMBL	CDS	282101	282637	.	+	0	ID=cds-CAL34462.1;Parent=gene-Cj0311;Dbxref=EnsemblGenomes-Gn:Cj0311,EnsemblGenomes-Tr:CAL34462,GOA:Q9PII8,InterPro:IPR001021,InterPro:IPR011035,InterPro:IPR020056,InterPro:IPR020057,InterPro:IPR029751,NCBI_GP:CAL34462.1;Name=CAL34462.1;Note=Original (2000) note: Cj0311%2C unknown%2C len: 178 aa%3B similar to CTC_BACSU general stress protein ctc (203 aa)%2Cfasta scores%3B opt: 290 z-score: 417.7 E(): 5.2e-16%2C 33.5%25 identity in 155 aa overlap. 56.7%25 identity to HP1496%3B~Updated (2006) note: Pfam PF01386 Ribosomal L25p family protein identified within CDS. Ctc protein has been shown to be a ribosomal protein and also binds to ribosomal 5S RNA. Characterised within Bacillus subtilis with marginal identity score. Full length alignment was not achieved. Putative kept within product function. Product modified to more specific family member due to motif match and characterisation papers. Functional classification - Adaptions and atypical conditions%3B~PMID:2836704%2C PMID:12432960%2C PMID:15236599;gbkey=CDS;gene=rplY;inference=protein motif:Pfam:PF01386;locus_tag=Cj0311;product=putative 50S ribosomal protein L25 (general stress protein Ctc);protein_id=CAL34462.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	282104	282361	.	+	.	ID=id-Cj0311;Note=HMMPfam hit to PF01386%2C Ribosomal L25p family%2Cscore 1.5e-29;gbkey=misc_feature;gene=rplY;inference=protein motif:Pfam:PF01386;locus_tag=Cj0311
gi|15791399|ref|NC_002163.1|	EMBL	gene	282634	283179	.	+	.	ID=gene-Cj0312;Name=pth;gbkey=Gene;gene=pth;gene_biotype=protein_coding;locus_tag=Cj0312
gi|15791399|ref|NC_002163.1|	EMBL	CDS	282634	283179	.	+	0	ID=cds-CAL34463.1;Parent=gene-Cj0312;Dbxref=EnsemblGenomes-Gn:Cj0312,EnsemblGenomes-Tr:CAL34463,GOA:Q9PII7,InterPro:IPR001328,InterPro:IPR018171,NCBI_GP:CAL34463.1;Name=CAL34463.1;Note=Original (2000) note: Cj0312%2C pth%2C probable peptidyl-tRNA hydrolase. len: 181 aa%3B simlar to many e.g. PTH_ECOLI peptidyl-tRNA hydrolase (EC 3.1.1.29) (194 aa)%2Cfasta scores%3B opt: 360 z-score: 469.6 E(): 6.7e-19%2C 35.8%25 identity in 190 aa overlap. 46.7%25 identity to HP1497. Contains PS01195 and PS01196 Peptidyl-tRNA hydrolase signatures 1 and 2%2C and Pfam match to entry PF01195 Pept_tRNA_hydro%2C Peptidyl-tRNA hydrolase%2C score 229.60%2CE-value 4.5e-65%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:1833189;gbkey=CDS;gene=pth;inference=protein motif:Prosite:PS01196;locus_tag=Cj0312;product=peptidyl-tRNA hydrolase;protein_id=CAL34463.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	282640	283167	.	+	.	ID=id-Cj0312;Note=HMMPfam hit to PF01195%2C Peptidyl-tRNA hydrolase%2Cscore 4.2e-68;gbkey=misc_feature;gene=pth;inference=protein motif:Pfam:PF01195;locus_tag=Cj0312
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	282673	282714	.	+	.	ID=id-Cj0312-2;Note=PS01195 Peptidyl-tRNA hydrolase signature 1;gbkey=misc_feature;gene=pth;inference=protein motif:Prosite:PS01195;locus_tag=Cj0312
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	282940	282972	.	+	.	ID=id-Cj0312-3;Note=PS01196 Peptidyl-tRNA hydrolase signature 2;gbkey=misc_feature;gene=pth;inference=protein motif:Prosite:PS01196;locus_tag=Cj0312
gi|15791399|ref|NC_002163.1|	EMBL	gene	283181	284239	.	+	.	ID=gene-Cj0313;Name=Cj0313;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0313
gi|15791399|ref|NC_002163.1|	EMBL	CDS	283181	284239	.	+	0	ID=cds-CAL34464.1;Parent=gene-Cj0313;Dbxref=EnsemblGenomes-Gn:Cj0313,EnsemblGenomes-Tr:CAL34464,GOA:Q0PBJ6,InterPro:IPR005495,UniProtKB/TrEMBL:Q0PBJ6,NCBI_GP:CAL34464.1;Name=CAL34464.1;Note=Original (2000) note: Cj0313%2C probable integral membrane protein%2C len: 352 aa%3B 35.9%25 identity to HP1498%3B~Updated (2006) note: Pfam domains PF03739 Predicted permease YjgP/YjgQ family were identified. Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long and contain about 6 transmembrane regions. They are predicted to be permeases although there is no verification of this. Six probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0313;product=putative integral membrane protein;protein_id=CAL34464.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	283196	284230	.	+	.	ID=id-Cj0313;Note=HMMPfam hit to PF03739%2C Predicted permease YjgP/YjgQ family%2C score 5.8e-79;gbkey=misc_feature;inference=protein motif:Pfam:PF03739;locus_tag=Cj0313
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	283214	283282	.	+	.	ID=id-Cj0313-2;Note=6 probable transmembrane helices predicted for Cj0313 by TMHMM2.0 at aa 12-34%2C 49-71%2C 95-117%2C 270-292%2C294-316 and 326-348;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0313;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	283325	283393	.	+	.	ID=id-Cj0313-2;Note=6 probable transmembrane helices predicted for Cj0313 by TMHMM2.0 at aa 12-34%2C 49-71%2C 95-117%2C 270-292%2C294-316 and 326-348;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0313;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	283463	283531	.	+	.	ID=id-Cj0313-2;Note=6 probable transmembrane helices predicted for Cj0313 by TMHMM2.0 at aa 12-34%2C 49-71%2C 95-117%2C 270-292%2C294-316 and 326-348;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0313;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	283988	284056	.	+	.	ID=id-Cj0313-2;Note=6 probable transmembrane helices predicted for Cj0313 by TMHMM2.0 at aa 12-34%2C 49-71%2C 95-117%2C 270-292%2C294-316 and 326-348;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0313;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	284060	284128	.	+	.	ID=id-Cj0313-2;Note=6 probable transmembrane helices predicted for Cj0313 by TMHMM2.0 at aa 12-34%2C 49-71%2C 95-117%2C 270-292%2C294-316 and 326-348;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0313;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	284156	284224	.	+	.	ID=id-Cj0313-2;Note=6 probable transmembrane helices predicted for Cj0313 by TMHMM2.0 at aa 12-34%2C 49-71%2C 95-117%2C 270-292%2C294-316 and 326-348;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0313;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	284174	284206	.	+	.	ID=id-Cj0313-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0313
gi|15791399|ref|NC_002163.1|	EMBL	gene	284283	285491	.	+	.	ID=gene-Cj0314;Name=lysA;gbkey=Gene;gene=lysA;gene_biotype=protein_coding;locus_tag=Cj0314
gi|15791399|ref|NC_002163.1|	EMBL	CDS	284283	285491	.	+	0	ID=cds-CAL34465.1;Parent=gene-Cj0314;Dbxref=EnsemblGenomes-Gn:Cj0314,EnsemblGenomes-Tr:CAL34465,GOA:Q9PII5,InterPro:IPR000183,InterPro:IPR002986,InterPro:IPR009006,InterPro:IPR022643,InterPro:IPR022644,InterPro:IPR022657,InterPro:IPR029066,NCBI_GP:CAL34465.1;Name=CAL34465.1;Note=Original (2000) note: Cj0314%2C lysA%2C probable diaminopimelate decarboxylase%2C len: 402 aa%3B highly similar to mnay e.g. DCDA_PSEAE diaminopimelate decarboxylase (EC 4.1.1.20) (415 aa)%2C fasta scores%3B opt: 1077 z-score: 968.8 E(): 0%2C 44.7%25 identity in 394 aa overlap. 60.4%25 identity to HP0290. Contains Pfam match to entry PF00278 Orn_DAP_Arg_deC%2C Pyridoxal-dependent decarboxylase%2C score 381.60%2C E-value 2.3e-113%3B~Updated (2006) note: Characterised within Pseudomonas aeruginosa with acceptable identity score. Putative not added to product function. Functional classification - Amino acid biosynthesis - Aspartate family%3B~PMID:3143046;gbkey=CDS;gene=lysA;inference=protein motif:Pfam:PF00278;locus_tag=Cj0314;product=diaminopimelate decarboxylase;protein_id=CAL34465.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	284334	285083	.	+	.	ID=id-Cj0314;Note=HMMPfam hit to PF02784%2C Pyridoxal-dependent decarboxylase%2C py%2C score 2e-76;gbkey=misc_feature;gene=lysA;inference=protein motif:Pfam:PF02784;locus_tag=Cj0314
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	285096	285410	.	+	.	ID=id-Cj0314-2;Note=HMMPfam hit to PF00278%2C Pyridoxal-dependent decarboxylase%2C C-%2C score 5.7e-33;gbkey=misc_feature;gene=lysA;inference=protein motif:Pfam:PF00278;locus_tag=Cj0314
gi|15791399|ref|NC_002163.1|	EMBL	gene	285493	286260	.	+	.	ID=gene-Cj0315;Name=Cj0315;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0315
gi|15791399|ref|NC_002163.1|	EMBL	CDS	285493	286260	.	+	0	ID=cds-CAL34466.1;Parent=gene-Cj0315;Dbxref=EnsemblGenomes-Gn:Cj0315,EnsemblGenomes-Tr:CAL34466,GOA:Q0PBJ4,InterPro:IPR006357,InterPro:IPR023214,InterPro:IPR023215,UniProtKB/TrEMBL:Q0PBJ4,NCBI_GP:CAL34466.1;Name=CAL34466.1;Note=Original (2000) note: Cj0315%2C unknown%2C len: 255 aa%3B similar to the hypothetical proteins TR:O59622 (EMBL:AB009530) Pyrococcus horikoshii PHBR011 (263 aa)%2Cfasta scores%3B opt: 185 z-score: 375.5 E(): 1.2e-13%2C 28.1%25 identity in 267 aa overlapNAGD_ECOLI nagD protein (250 aa)%2C fasta scores%3B opt: 259 z-score: 266.1 E(): 1.4e-07%2C26.0%25 identity in 250 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF00702 haloacid dehalogenase-like hydrolase%2C PF02142 MGS-like domain and PF03558 TBSV core protein P21/P22 were identified with separate Pfam search. This family is a member of the HAD superfamily which includes L-2-haloacid dehalogenase%2Cepoxide hydrolases and phosphatases. Previous matches to nagD protein are also members of this family. Product function modified to more specific family member based on motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF03558;locus_tag=Cj0315;product=putative HAD-superfamily hydrolase%2C subfamily IIA;protein_id=CAL34466.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	286248	287321	.	+	.	ID=gene-Cj0316;Name=pheA;gbkey=Gene;gene=pheA;gene_biotype=protein_coding;locus_tag=Cj0316
gi|15791399|ref|NC_002163.1|	EMBL	CDS	286248	287321	.	+	0	ID=cds-CAL34467.1;Parent=gene-Cj0316;Dbxref=EnsemblGenomes-Gn:Cj0316,EnsemblGenomes-Tr:CAL34467,GOA:Q0PBJ3,InterPro:IPR001086,InterPro:IPR002701,InterPro:IPR002912,InterPro:IPR008242,InterPro:IPR010957,InterPro:IPR018528,InterPro:IPR020822,UniProtKB/TrEMBL:Q0PBJ3,NCBI_GP:CAL34467.1;Name=CAL34467.1;Note=Original (2000) note: Cj0316%2C pheA%2C probable chorismate mutase/prephenate dehydratase%2C len: 357 aa%3B similar to many e.g. PHEA_ECOLI chorismate mutase (EC 5.4.99.5)/prephenate dehydratase (EC 4.2.1.51) (386 aa)%2Cfasta scores%3B opt: 482 z-score: 733.8 E(): 0%2C 33.1%25 identity in 366 aa overlap. Similar in N-term to possible truncated pheA in Hp%3B HP0291 hypothetical protein (96 aa) 35.8%25 identity in 81 aa overlap. Contains PS00857 and PS00858 Prephenate dehydratase signatures 1 and 2%2C and Pfam match to entry PF00800 PDT%2C Prephenate dehydratase%2Cscore 268.20%2C E-value 1.1e-76%3B~Updated (2006) note: Pfam domains PF01817 Chorismate mutase type II and PF01842 ACT domainn were identified. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Amino acid biosynthesis -Aromatic amino acid family%3B~PMID:9497350;gbkey=CDS;gene=pheA;inference=protein motif:Prosite:PS00858;locus_tag=Cj0316;product=chorismate mutase/prephenate dehydratase;protein_id=CAL34467.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	286251	286508	.	+	.	ID=id-Cj0316;Note=HMMPfam hit to PF01817%2C Chorismate mutase type II%2Cscore 1.9e-22;gbkey=misc_feature;gene=pheA;inference=protein motif:Pfam:PF01817;locus_tag=Cj0316
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	286512	287051	.	+	.	ID=id-Cj0316-2;Note=HMMPfam hit to PF00800%2C Prephenate dehydratase%2Cscore 6.3e-56;gbkey=misc_feature;gene=pheA;inference=protein motif:Pfam:PF00800;locus_tag=Cj0316
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	286968	287036	.	+	.	ID=id-Cj0316-3;Note=PS00857 Prephenate dehydratase signature 1;gbkey=misc_feature;gene=pheA;inference=protein motif:Prosite:PS00857;locus_tag=Cj0316
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	287073	287303	.	+	.	ID=id-Cj0316-4;Note=HMMPfam hit to PF01842%2C ACT domain%2C score 0.00089;gbkey=misc_feature;gene=pheA;inference=protein motif:Pfam:PF01842;locus_tag=Cj0316
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	287154	287177	.	+	.	ID=id-Cj0316-5;Note=PS00858 Prephenate dehydratase signature 2;gbkey=misc_feature;gene=pheA;inference=protein motif:Prosite:PS00858;locus_tag=Cj0316
gi|15791399|ref|NC_002163.1|	EMBL	gene	287311	288405	.	+	.	ID=gene-Cj0317;Name=hisC;gbkey=Gene;gene=hisC;gene_biotype=protein_coding;locus_tag=Cj0317
gi|15791399|ref|NC_002163.1|	EMBL	CDS	287311	288405	.	+	0	ID=cds-CAL34468.1;Parent=gene-Cj0317;Dbxref=EnsemblGenomes-Gn:Cj0317,EnsemblGenomes-Tr:CAL34468,GOA:Q9PII2,InterPro:IPR004839,InterPro:IPR005861,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,PDB:3GET,NCBI_GP:CAL34468.1;Name=CAL34468.1;Note=Original (2000) note: Cj0317%2C hisC%2C probable histidinol-phosphate aminotransferase%2C len: 364 aa%3B similar to many e.g. HIS8_BACSU histidinol-phosphate aminotransferase (EC 2.6.1.9) (360 aa)%2C fasta scores%3B opt: 762 z-score: 1062.4 E(): 0%2C 36.2%25 identity in 367 aa overlap. No Hp match. Also similar to Cj1437c (hisC2) (30.0%25 identity in 347 aa overlap). Contains Pfam match to entry PF00222 aminotran_2%2C Aminotransferases class-II%2Cscore 60.80%2C E-value 2.9e-14%3B~Updated (2006) note: Pfam domains PF00155 Aminotransferase class I and II were identified. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Histidine%3B~PMID:11518529%2C PMID:2999081%2C PMID:11294630;gbkey=CDS;gene=hisC;inference=protein motif:Pfam:PF00222;locus_tag=Cj0317;product=histidinol-phosphate aminotransferase;protein_id=CAL34468.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	287533	288399	.	+	.	ID=id-Cj0317;Note=HMMPfam hit to PF00155%2C Aminotransferase class I and II%2C score 6.6e-16;gbkey=misc_feature;gene=hisC;inference=protein motif:Pfam:PF00155;locus_tag=Cj0317
gi|15791399|ref|NC_002163.1|	EMBL	gene	288457	290139	.	+	.	ID=gene-Cj0318;Name=fliF;gbkey=Gene;gene=fliF;gene_biotype=protein_coding;locus_tag=Cj0318
gi|15791399|ref|NC_002163.1|	EMBL	CDS	288457	290139	.	+	0	ID=cds-CAL34469.1;Parent=gene-Cj0318;Dbxref=EnsemblGenomes-Gn:Cj0318,EnsemblGenomes-Tr:CAL34469,GOA:Q0PBJ1,InterPro:IPR000067,InterPro:IPR006182,InterPro:IPR013556,UniProtKB/TrEMBL:Q0PBJ1,NCBI_GP:CAL34469.1;Name=CAL34469.1;Note=Original (2000) note: Cj0318%2C fliF%2C probable flagellar M-ring protein%2C len: 560 aa%3B similar to many e.g. FLIF_ECOLI flagellar M-ring protein (552 aa)%2C fasta scores%3B opt: 636 z-score: 805.0 E(): 0%2C 32.0%25 identity in 560 aa overlap. 43.2%25 identity to HP0351%3B~Updated (2006) note: Pfam domains PF01514 Secretory protein of YscJ/FliF family were identified. Further supoport given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification -Surface structures%3B~PMID:1551848;gbkey=CDS;gene=fliF;inference=protein motif:Pfam:PF01514;locus_tag=Cj0318;product=flagellar M-ring protein;protein_id=CAL34469.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	288505	289146	.	+	.	ID=id-Cj0318;Note=HMMPfam hit to PF01514%2C Secretory protein of YscJ/FliF family%2C score 3.9e-54;gbkey=misc_feature;gene=fliF;inference=protein motif:Pfam:PF01514;locus_tag=Cj0318
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	288523	288582	.	+	.	ID=id-Cj0318-2;Note=1 probable transmembrane helix predicted for Cj0318 by TMHMM2.0 at aa 23-42;gbkey=misc_feature;gene=fliF;inference=protein motif:TMHMM:2.0;locus_tag=Cj0318
gi|15791399|ref|NC_002163.1|	EMBL	gene	290139	291167	.	+	.	ID=gene-Cj0319;Name=fliG;gbkey=Gene;gene=fliG;gene_biotype=protein_coding;locus_tag=Cj0319
gi|15791399|ref|NC_002163.1|	EMBL	CDS	290139	291167	.	+	0	ID=cds-CAL34470.1;Parent=gene-Cj0319;Dbxref=EnsemblGenomes-Gn:Cj0319,EnsemblGenomes-Tr:CAL34470,GOA:Q0PBJ0,InterPro:IPR000090,InterPro:IPR011002,InterPro:IPR028263,UniProtKB/TrEMBL:Q0PBJ0,NCBI_GP:CAL34470.1;Name=CAL34470.1;Note=Original (2000) note: Cj0319%2C fliG%2C probable flagellar motor switch protein%2C len: 342 aa%3B similar to many e.g. FLIG_ECOLI flagellar motor switch protein fliG (331 aa)%2C fasta scores%3B opt: 609 z-score: 927.6 E(): 0%2C30.1%25 identity in 326 aa overlap. 61.5%25 identity to HP0352%3B~Updated (2006) note: Pfam domain PF01706 FliG C-terminal domain was identified. Further supoport given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Surface structures%3B~PMID:1551848%2C PMID:8308888%2C PMID:8550421;gbkey=CDS;gene=fliG;inference=protein motif:Pfam:PF01706;locus_tag=Cj0319;product=flagellar motor switch protein;protein_id=CAL34470.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	290814	291143	.	+	.	ID=id-Cj0319;Note=HMMPfam hit to PF01706%2C FliG C-terminal domain%2Cscore 7.5e-48;gbkey=misc_feature;gene=fliG;inference=protein motif:Pfam:PF01706;locus_tag=Cj0319
gi|15791399|ref|NC_002163.1|	EMBL	gene	291175	292005	.	+	.	ID=gene-Cj0320;Name=fliH;gbkey=Gene;gene=fliH;gene_biotype=protein_coding;locus_tag=Cj0320
gi|15791399|ref|NC_002163.1|	EMBL	CDS	291175	292005	.	+	0	ID=cds-CAL34471.1;Parent=gene-Cj0320;Dbxref=EnsemblGenomes-Gn:Cj0320,EnsemblGenomes-Tr:CAL34471,InterPro:IPR018035,UniProtKB/TrEMBL:Q0PBI9,NCBI_GP:CAL34471.1;Name=CAL34471.1;Note=Original (2000) note: Cj0320%2C fliH%2C possible flagellar assembly protein%2C len: 364 aa%3B weakly similar to e.g. SW:FLIH_BACSU P23449 probable flagellar assembly protein fliH (208 aa)%2C wublastp scores%3B E%3D 6.3e-07%2C 22%25 identity in 190 aa overlap. 34.6%25 identity to HP0353%3B~Updated (2006) note: Characterised within Bacillus subtilis%2C however%2C identity score unnacceptable. Putative kept within product function. Functional classification -Surface structures%3B~PMID:1828465;gbkey=CDS;gene=fliH;locus_tag=Cj0320;product=putative flagellar assembly protein;protein_id=CAL34471.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	291998	293845	.	+	.	ID=gene-Cj0321;Name=dxs;gbkey=Gene;gene=dxs;gene_biotype=protein_coding;locus_tag=Cj0321
gi|15791399|ref|NC_002163.1|	EMBL	CDS	291998	293845	.	+	0	ID=cds-CAL34472.1;Parent=gene-Cj0321;Dbxref=EnsemblGenomes-Gn:Cj0321,EnsemblGenomes-Tr:CAL34472,GOA:Q9PIH8,InterPro:IPR005474,InterPro:IPR005475,InterPro:IPR005476,InterPro:IPR005477,InterPro:IPR009014,InterPro:IPR020826,InterPro:IPR029061,NCBI_GP:CAL34472.1;Name=CAL34472.1;Note=Original (2000) note: Cj0321%2C dxs%2C probable 1-deoxyxylulose-5-phosphate synthase%2C len: 615 aa%3B similar to many e.g. DXS_ECOLI 1-deoxyxylulose-5-phosphate synthase (619 aa)%2C fasta scores%3B opt: 1493 z-score: 1697.3 E(): 0%2C 41.0%25 identity in 608 aa overlap. 57.9%25 identity to HP0354 (called transketolase B). Also similar to C. jejuni transketolase%2C Cj1645 (25.8%25 identity in 652 aa overlap). Contains PS00801 and PS00802 Transketolase signatures 1 and 2%3B~Updated (2006) note: Pfam domains F02779 Transketolase%2C pyridine binding domain and HMMPfam PF02780 Transketolase%2C C-terminal domain were identified within CDS. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Product function modified to more specific naming based on new updated EC number. Functional classification - Central intermediary metabolism - General%3B~PMID:9482846%2C PMID:10648511;gbkey=CDS;gene=dxs;inference=protein motif:Prosite:PS00802;locus_tag=Cj0321;product=L-deoxy-D-xylulose-5-phosphate synthase;protein_id=CAL34472.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	292079	292138	.	+	.	ID=id-Cj0321;Note=PS00801 Transketolase signature 1;gbkey=misc_feature;gene=dxs;inference=protein motif:Prosite:PS00801;locus_tag=Cj0321
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	292337	292369	.	+	.	ID=id-Cj0321-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=dxs;inference=protein motif:Prosite:PS00013;locus_tag=Cj0321
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	292922	293416	.	+	.	ID=id-Cj0321-3;Note=HMMPfam hit to PF02779%2C Transketolase%2C pyridine binding domai%2C score 2.1e-48;gbkey=misc_feature;gene=dxs;inference=protein motif:Pfam:PF02779;locus_tag=Cj0321
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	293240	293290	.	+	.	ID=id-Cj0321-4;Note=PS00802 Transketolase signature 2;gbkey=misc_feature;gene=dxs;inference=protein motif:Prosite:PS00802;locus_tag=Cj0321
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	293447	293815	.	+	.	ID=id-Cj0321-5;Note=HMMPfam hit to PF02780%2C Transketolase%2C C-terminal domain%2C score 6.3e-11;gbkey=misc_feature;gene=dxs;inference=protein motif:Pfam:PF02780;locus_tag=Cj0321
gi|15791399|ref|NC_002163.1|	EMBL	gene	293931	294341	.	+	.	ID=gene-Cj0322;Name=perR;gbkey=Gene;gene=perR;gene_biotype=protein_coding;locus_tag=Cj0322
gi|15791399|ref|NC_002163.1|	EMBL	CDS	293931	294341	.	+	0	ID=cds-CAL34473.1;Parent=gene-Cj0322;Dbxref=EnsemblGenomes-Gn:Cj0322,EnsemblGenomes-Tr:CAL34473,GOA:Q0PBI7,InterPro:IPR002481,InterPro:IPR011991,UniProtKB/TrEMBL:Q0PBI7,NCBI_GP:CAL34473.1;Name=CAL34473.1;Note=Original (2000) note: Cj0322%2C perR%2C regulator of peroxide stress regulon%2C len: 136 aa%3B similar to many members of the furR family e.g. FUR3_BACSU ferric uptake regulation protein homolog 3 (145 aa)%2C fasta scores%3B opt: 258 z-score: 379.6 E(): 6.9e-14%2C 32.6%25 identity in 135 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01475 Ferric uptake regulator family was identified within CDS. Further support given to product function. Marginal identity scores were obtained with many. Appropriate motifs present. Putative not added to product function. Functional classification - Broad regulatory functions%3B~PMID:9701813%2C PMID:12100544;gbkey=CDS;gene=perR;inference=protein motif:Pfam:PF01475;locus_tag=Cj0322;product=peroxide stress regulator;protein_id=CAL34473.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	293955	294314	.	+	.	ID=id-Cj0322;Note=HMMPfam hit to PF01475%2C Ferric uptake regulator family%2C score 4.3e-22;gbkey=misc_feature;gene=perR;inference=protein motif:Pfam:PF01475;locus_tag=Cj0322
gi|15791399|ref|NC_002163.1|	EMBL	gene	294387	295583	.	+	.	ID=gene-Cj0323;Name=Cj0323;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0323
gi|15791399|ref|NC_002163.1|	EMBL	CDS	294387	295583	.	+	0	ID=cds-CAL34474.1;Parent=gene-Cj0323;Dbxref=EnsemblGenomes-Gn:Cj0323,EnsemblGenomes-Tr:CAL34474,InterPro:IPR023577,UniProtKB/TrEMBL:Q0PBI6,NCBI_GP:CAL34474.1;Name=CAL34474.1;Note=Original (2000) note: Cj0323%2C unknown%2C len: 398 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0323;product=hypothetical protein Cj0323;protein_id=CAL34474.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	295586	296293	.	+	.	ID=gene-Cj0324;Name=ubiE;gbkey=Gene;gene=ubiE;gene_biotype=protein_coding;locus_tag=Cj0324
gi|15791399|ref|NC_002163.1|	EMBL	CDS	295586	296293	.	+	0	ID=cds-CAL34475.1;Parent=gene-Cj0324;Dbxref=EnsemblGenomes-Gn:Cj0324,EnsemblGenomes-Tr:CAL34475,GOA:Q9PIH5,InterPro:IPR004033,InterPro:IPR023576,InterPro:IPR029063,NCBI_GP:CAL34475.1;Name=CAL34475.1;Note=Original (2000) note: Cj0324%2C ubiE%2C probable ubiquinone/menaquinone biosynthesis methlytransferase%2Clen: 235 aa%3B similar to many e.g. UBIE_ECOLI ubiquinone/menaquinone biosynthesis methlytransferase (EC 2.1.1.-) (251 aa)%2C fasta scores%3B opt: 380 z-score: 597.2 E(): 5.2e-26%2C 30.5%25 identity in 236 aa overlap. 50.2%25 identity to HP1483 (called gerC2 protein). Contains Pfam match to entry PF01209 Ubie_methyltran%2C ubiE/COQ5 methyltransferase family%2C score 92.40%2C E-value 8.9e-24%3B~Updated (2006) note: Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Menaquinone and ubiquinine%3B~PMID:9045837;gbkey=CDS;gene=ubiE;inference=protein motif:Pfam:PF01209;locus_tag=Cj0324;product=ubiquinone/menaquinone biosynthesis methlytransferase;protein_id=CAL34475.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	295586	296287	.	+	.	ID=id-Cj0324;Note=HMMPfam hit to PF01209%2C ubiE/COQ5 methyltransferase family%2C score 2.2e-28;gbkey=misc_feature;gene=ubiE;inference=protein motif:Pfam:PF01209;locus_tag=Cj0324
gi|15791399|ref|NC_002163.1|	EMBL	gene	296290	297453	.	+	.	ID=gene-Cj0325;Name=xseA;gbkey=Gene;gene=xseA;gene_biotype=protein_coding;locus_tag=Cj0325
gi|15791399|ref|NC_002163.1|	EMBL	CDS	296290	297453	.	+	0	ID=cds-CAL34476.1;Parent=gene-Cj0325;Dbxref=EnsemblGenomes-Gn:Cj0325,EnsemblGenomes-Tr:CAL34476,GOA:Q9PIH4,InterPro:IPR003753,InterPro:IPR004365,InterPro:IPR020579,NCBI_GP:CAL34476.1;Name=CAL34476.1;Note=Original (2000) note: Cj0325%2C xseA%2C probable exodeoxyribonuclease VII large subunit%2C len: 387 aa%3B similar to many e.g. EX7L_ECOLI exodeoxyribonuclease VII large subunit (EC 3.1.11.6) (456 aa)%2C fasta scores%3B opt: 798 z-score: 1133.5 E(): 0%2C 36.6%25 identity in 366 aa overlap. 34.2%25 identity to HP0259%3B~Updated (2006) note: Pfam domain PF01336 OB-fold nucleic acid binding domain and PF02601 Exonuclease VII%2Clarge subunit was identified. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Degradation of macromolecules - DNA%3B~PMID:3021756%2C PMID:6284744;gbkey=CDS;gene=xseA;inference=protein motif:Pfam:PF02601;locus_tag=Cj0325;product=exodeoxyribonuclease VII large subunit;protein_id=CAL34476.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	296350	296577	.	+	.	ID=id-Cj0325;Note=HMMPfam hit to PF01336%2C OB-fold nucleic acid binding domain%2C score 6.9e-11;gbkey=misc_feature;gene=xseA;inference=protein motif:Pfam:PF01336;locus_tag=Cj0325
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	296854	297333	.	+	.	ID=id-Cj0325-2;Note=HMMPfam hit to PF02601%2C Exonuclease VII%2C large subunit%2C score 1.1e-27;gbkey=misc_feature;gene=xseA;inference=protein motif:Pfam:PF02601;locus_tag=Cj0325
gi|15791399|ref|NC_002163.1|	EMBL	gene	297463	298539	.	+	.	ID=gene-Cj0326;Name=serC;gbkey=Gene;gene=serC;gene_biotype=protein_coding;locus_tag=Cj0326
gi|15791399|ref|NC_002163.1|	EMBL	CDS	297463	298539	.	+	0	ID=cds-CAL34477.1;Parent=gene-Cj0326;Dbxref=EnsemblGenomes-Gn:Cj0326,EnsemblGenomes-Tr:CAL34477,GOA:Q9PIH3,InterPro:IPR000192,InterPro:IPR003248,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR022278,PDB:3M5U,NCBI_GP:CAL34477.1;Name=CAL34477.1;Note=Original (2000) note: Cj0326%2C serC%2C probable phosphoserine aminotransferase%2C len: 358 aa%3B highly similar to many e.g. SERC_ECOLI phosphoserine aminotransferase (EC 2.6.1.52) (361 aa)%2C fasta scores%3B opt: 869 z-score: 1419.8 E(): 0%2C 41.8%25 identity in 359 aa overlap. No Hp match. Conatains Pfam match to entry PF00266 aminotran_5%2C Aminotransferases class-V%2C score 133.30%2C E-value 4.6e-36%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Serine family%3B~PMID:10024454%2C PMID:3518706;gbkey=CDS;gene=serC;inference=protein motif:Pfam:PF00266;locus_tag=Cj0326;product=phosphoserine aminotransferase;protein_id=CAL34477.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	297499	298500	.	+	.	ID=id-Cj0326;Note=HMMPfam hit to PF00266%2C Aminotransferase class-V%2Cscore 3.6e-37;gbkey=misc_feature;gene=serC;inference=protein motif:Pfam:PF00266;locus_tag=Cj0326
gi|15791399|ref|NC_002163.1|	EMBL	gene	298536	298886	.	+	.	ID=gene-Cj0327;Name=Cj0327;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0327
gi|15791399|ref|NC_002163.1|	EMBL	CDS	298536	298886	.	+	0	ID=cds-CAL34478.1;Parent=gene-Cj0327;Dbxref=EnsemblGenomes-Gn:Cj0327,EnsemblGenomes-Tr:CAL34478,InterPro:IPR006175,InterPro:IPR013813,UniProtKB/TrEMBL:Q0PBI2,NCBI_GP:CAL34478.1;Name=CAL34478.1;Note=Original (2000) note: Cj0327%2C unknown%2C len: 116 aa%3B similar to hypothetical proteins e.g. YABJ_BACSU (125 aa)%2Cfasta scores%3B opt: 211 z-score: 261.9 E(): 2.5e-07%2C 33.0%25 identity in 109 aa overlap%2C and to e.g. UK14_HUMAN 14.5 kd translational inhibitor protein (137 aa)%2C fasta scores%3B opt: 173 z-score: 249.5 E(): 1.2e-06%2C 29.2%25 identity in 106 aa overlap. No Hp ortholog. Also similar to Cj1388 (33.3%25 identity in 96 aa overlap). Contains Pfam match to entry PF01042 DUF10%2C Domain of unknown function%2C score 69.30%2C E-value 8.4e-17%3B~Updated (2006) note: Pfam domain PF01042 Endoribonuclease L-PSP identified within CDS (previously uncharacterised). Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Putative kept within product fucntion. Functional classification - Degradation of macromolecules - DNA;gbkey=CDS;inference=protein motif:Pfam:PF01042;locus_tag=Cj0327;product=putative endoribonuclease L-PSP family protein;protein_id=CAL34478.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	298554	298874	.	+	.	ID=id-Cj0327;Note=HMMPfam hit to PF01042%2C Endoribonuclease L-PSP%2Cscore 3.8e-16;gbkey=misc_feature;inference=protein motif:Pfam:PF01042;locus_tag=Cj0327
gi|15791399|ref|NC_002163.1|	EMBL	gene	298883	299857	.	-	.	ID=gene-Cj0328c;Name=fabH;gbkey=Gene;gene=fabH;gene_biotype=protein_coding;locus_tag=Cj0328c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	298883	299857	.	-	0	ID=cds-CAL34479.1;Parent=gene-Cj0328c;Dbxref=EnsemblGenomes-Gn:Cj0328c,EnsemblGenomes-Tr:CAL34479,GOA:Q9PIH1,InterPro:IPR004655,InterPro:IPR013747,InterPro:IPR013751,InterPro:IPR016038,InterPro:IPR016039,NCBI_GP:CAL34479.1;Name=CAL34479.1;Note=Original (2000) note: Cj0328c%2C fabH%2C probable 3-oxoacyl-[acyl-carrier-protein] synthase%2C len: 324 aa%3B highly simlar to many e.g.FABH_ECOLI 3-oxoacyl-[acyl-carrier-protein] synthase III (317 aa)%2Cfasta scores%3B opt: 978 z-score: 1555.6 E(): 0%2C 48.2%25 identity in 309 aa overlap. 59.8%25 identity to HP0202. Also similar to Cj1303 (31.9%25 identity in 339 aa overlap)%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Fatty acid biosynthesis%3B~PMID:1551888;gbkey=CDS;gene=fabH;locus_tag=Cj0328c;product=3-oxoacyl-[acyl-carrier-protein] synthase;protein_id=CAL34479.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	299850	300836	.	-	.	ID=gene-Cj0329c;Name=plsX;gbkey=Gene;gene=plsX;gene_biotype=protein_coding;locus_tag=Cj0329c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	299850	300836	.	-	0	ID=cds-CAL34480.1;Parent=gene-Cj0329c;Dbxref=EnsemblGenomes-Gn:Cj0329c,EnsemblGenomes-Tr:CAL34480,GOA:Q9PIH0,InterPro:IPR003664,InterPro:IPR012281,InterPro:IPR024084,NCBI_GP:CAL34480.1;Name=CAL34480.1;Note=Original (2000) note: Cj0329c%2C plsX%2C probable fatty acid/phospholipid synthesis protein plsX homolog%2C len: 328 aa%3B similar to many e.g. PLSX_ECOLI fatty acid/phospholipid synthesis protein plsX homolog (346 aa)%2Cfasta scores%3B opt: 711 z-score: 1146.5 E(): 0%2C 39.6%25 identity in 326 aa overlap. 53.2%25 identity to HP0201%3B~Updated (2006) note: Pfam domain PF02504 fatty acid synthesis protein identified within CDS. Further support given to product function. Specific characterisation with acceptable identity score has not been carried out yet. Putative kept within product function. Functional classification - Fatty acid biosynthesis%3B~PMID:9642179%2C PMID:8759840;gbkey=CDS;gene=plsX;inference=protein motif:Pfam:PF02504;locus_tag=Cj0329c;product=putative fatty acid/phospholipid synthesis protein;protein_id=CAL34480.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	299883	300833	.	-	.	ID=id-Cj0329c;Note=HMMPfam hit to PF02504%2C Fatty acid synthesis protein%2C score 1.6e-141;gbkey=misc_feature;gene=plsX;inference=protein motif:Pfam:PF02504;locus_tag=Cj0329c
gi|15791399|ref|NC_002163.1|	EMBL	gene	300842	300988	.	-	.	ID=gene-Cj0330c;Name=rpmF;gbkey=Gene;gene=rpmF;gene_biotype=protein_coding;locus_tag=Cj0330c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	300842	300988	.	-	0	ID=cds-CAL34481.1;Parent=gene-Cj0330c;Dbxref=EnsemblGenomes-Gn:Cj0330c,EnsemblGenomes-Tr:CAL34481,GOA:Q9PIG9,InterPro:IPR002677,InterPro:IPR011332,NCBI_GP:CAL34481.1;Name=CAL34481.1;Note=Original (2000) note: Cj0330c%2C rpmF%2C probable 50S ribosomal protein L32%2C len: 48 aa%3B similar to e.g. RL32_BACST 50S ribosomal protein L32 (56 aa)%2C fasta scores%3B opt: 118 z-score: 174.5 E(): 0.018%2C 41.7%25 identity in 48 aa overlap. 72.9%25 identity to HP0200%3B~Updated (2006) note: Pfam domain PF01783 Ribosomal L32p protein family identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:6420194;gbkey=CDS;gene=rpmF;inference=protein motif:Pfam:PF01783;locus_tag=Cj0330c;product=50S ribosomal protein L32;protein_id=CAL34481.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	300851	300985	.	-	.	ID=id-Cj0330c;Note=HMMPfam hit to PF01783%2C Ribosomal L32p protein family%2C score 1.8e-05;gbkey=misc_feature;gene=rpmF;inference=protein motif:Pfam:PF01783;locus_tag=Cj0330c
gi|15791399|ref|NC_002163.1|	EMBL	gene	301012	301365	.	-	.	ID=gene-Cj0331c;Name=Cj0331c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0331c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	301012	301365	.	-	0	ID=cds-CAL34482.1;Parent=gene-Cj0331c;Dbxref=EnsemblGenomes-Gn:Cj0331c,EnsemblGenomes-Tr:CAL34482,UniProtKB/TrEMBL:Q0PBH8,NCBI_GP:CAL34482.1;Name=CAL34482.1;Note=Original (2000) note: Cj0331c%2C unknown%2C len: 117 aa%3B 34.7%25 identity to HP0199. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0331c;product=hypothetical protein Cj0331c;protein_id=CAL34482.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	301366	301779	.	-	.	ID=gene-Cj0332c;Name=ndk;gbkey=Gene;gene=ndk;gene_biotype=protein_coding;locus_tag=Cj0332c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	301366	301779	.	-	0	ID=cds-CAL34483.1;Parent=gene-Cj0332c;Dbxref=EnsemblGenomes-Gn:Cj0332c,EnsemblGenomes-Tr:CAL34483,GOA:Q9PIG7,InterPro:IPR001564,InterPro:IPR023005,PDB:3PJ9,NCBI_GP:CAL34483.1;Name=CAL34483.1;Note=Original (2000) note: Cj0332c%2C ndk%2C probable nucleoside diphosphate kinase%2C len: 137 aa%3B highly similar to many e.g. NDK_ECOLI nucleoside diphosphate kinase (EC 2.7.4.6) (142 aa)%2C fasta scores%3B opt: 532 z-score: 964.5 E(): 0%2C 57.7%25 identity in 137 aa overlap. 73.3%25 identity to HP0198. Contains PS00469 Nucleoside diphosphate kinases active site and Pfam match to entry PF00334 NDK%2CNucleoside diphosphate kinases%2C score 280.30%2C E-value 2.4e-80%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Literature search identified paper linking protein to glycoprotein. Functional classification - Purine ribonucleotide biosynthesis%3B~PMID:1657712%2C PMID:7730286;gbkey=CDS;gene=ndk;inference=protein motif:Prosite:PS00469;locus_tag=Cj0332c;product=nucleoside diphosphate kinase;protein_id=CAL34483.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	301369	301776	.	-	.	ID=id-Cj0332c;Note=HMMPfam hit to PF00334%2C Nucleoside diphosphate kinase%2C score 6e-80;gbkey=misc_feature;gene=ndk;inference=protein motif:Pfam:PF00334;locus_tag=Cj0332c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	301420	301446	.	-	.	ID=id-Cj0332c-2;Note=PS00469 Nucleoside diphosphate kinases active site;gbkey=misc_feature;gene=ndk;inference=protein motif:Prosite:PS00469;locus_tag=Cj0332c
gi|15791399|ref|NC_002163.1|	EMBL	gene	301892	302176	.	-	.	ID=gene-Cj0333c;Name=fdxA;gbkey=Gene;gene=fdxA;gene_biotype=protein_coding;locus_tag=Cj0333c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	301892	302176	.	-	0	ID=cds-CAL34484.1;Parent=gene-Cj0333c;Dbxref=EnsemblGenomes-Gn:Cj0333c,EnsemblGenomes-Tr:CAL34484,GOA:Q0PBH6,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q0PBH6,NCBI_GP:CAL34484.1;Name=CAL34484.1;Note=Original (2000) note: Cj0333c%2C fdxA%2C probable ferredoxin%2C len: 94 aa%3B similar to many e.g. FER_CLOTM ferredoxin (55 aa)%2C fasta scores%3B opt: 142 z-score: 311.2 E(): 4.5e-10%2C 45.8%25 identity in 59 aa overlap. No Hp ortholog. Also similar to Cj0354c (38.8%25 identity in 67 aa overlap). Contains PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature and Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains.%2C score 51.80%2C E-value 8.8e-14%3B~Updated (2006) note: Similar to many e.g. Clostridium sp. with acceptable identity scores. Putative not added to product function. Functional classification -Energy metabolism - Electron transport%3B~PMID:4433520;gbkey=CDS;gene=fdxA;inference=protein motif:Prosite:PS00198;locus_tag=Cj0333c;product=ferredoxin;protein_id=CAL34484.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	302102	302173	.	-	.	ID=id-Cj0333c;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 2.9e-06;gbkey=misc_feature;gene=fdxA;inference=protein motif:Pfam:PF00037;locus_tag=Cj0333c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	302117	302152	.	-	.	ID=id-Cj0333c-2;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=fdxA;inference=protein motif:Prosite:PS00198;locus_tag=Cj0333c
gi|15791399|ref|NC_002163.1|	EMBL	gene	302383	302979	.	+	.	ID=gene-Cj0334;Name=ahpC;gbkey=Gene;gene=ahpC;gene_biotype=protein_coding;locus_tag=Cj0334
gi|15791399|ref|NC_002163.1|	EMBL	CDS	302383	302979	.	+	0	ID=cds-CAL34485.1;Parent=gene-Cj0334;Dbxref=EnsemblGenomes-Gn:Cj0334,EnsemblGenomes-Tr:CAL34485,GOA:Q0PBH5,InterPro:IPR000866,InterPro:IPR012336,InterPro:IPR019479,InterPro:IPR024706,UniProtKB/TrEMBL:Q0PBH5,NCBI_GP:CAL34485.1;Name=CAL34485.1;Note=Original (2000) note: Cj0334%2C ahpC%2C probable alkyl hydroperoxide reductase%2C len: 198 aa%3B highly simlar to e.g. TDX1_HUMAN thioredoxin peroxidase 1 (198 aa)%2C fasta scores%3B opt: 615 z-score: 915.3 E(): 0%2C 46.1%25 identity in 193 aa overlap%2C and to e.g. AHPC_ECOLI P26427 alkyl hydroperoxide reductase C22 protein (EC 1.6.4.-) (186 aa)%2Cwublastp scores E%3D 8.9e-23%2C 34%25 identity in 149 aa overlap. 67.7%25 identity to HP1563 (Hp 26 kD antigen). Contains Pfam match to entry PF00578 AhpC-TSA%2C AhpC/TSA family%2C score 208.20%2C E-value 1.2e-58%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Putative not added to product function. Literature search identified paper linking protein to glycoprotein (PMID:12186869). Functional classification - Detoxification%3B~PMID:10438747%2C PMID:10515927%2C PMID:12186869;gbkey=CDS;gene=ahpC;inference=protein motif:Pfam:PF00578;locus_tag=Cj0334;product=alkyl hydroperoxide reductase;protein_id=CAL34485.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	302389	302844	.	+	.	ID=id-Cj0334;Note=HMMPfam hit to PF00578%2C AhpC/TSA family%2C score 8.6e-60;gbkey=misc_feature;gene=ahpC;inference=protein motif:Pfam:PF00578;locus_tag=Cj0334
gi|15791399|ref|NC_002163.1|	EMBL	gene	303098	304186	.	+	.	ID=gene-Cj0335;Name=flhB;gbkey=Gene;gene=flhB;gene_biotype=protein_coding;locus_tag=Cj0335
gi|15791399|ref|NC_002163.1|	EMBL	CDS	303098	304186	.	+	0	ID=cds-CAL34486.1;Parent=gene-Cj0335;Dbxref=EnsemblGenomes-Gn:Cj0335,EnsemblGenomes-Tr:CAL34486,GOA:Q0PBH4,InterPro:IPR006135,InterPro:IPR006136,InterPro:IPR029025,UniProtKB/TrEMBL:Q0PBH4,NCBI_GP:CAL34486.1;Name=CAL34486.1;Note=Original (2000) note: Cj0335%2C flhB%2C probable flagellar biosynthetic protein%2C len: 362 aa%3B similar to many e.g. FLHB_ECOLI flagellar biosynthetic protein flhB (382 aa)%2C fasta scores%3B opt: 856 z-score: 1174.4 E(): 0%2C37.6%25 identity in 362 aa overlap. 39.8%25 identity to HP0770. Also similar in C-term to Cj0848 (93 aa) (40.7%25 identity in 81 aa overlap). Contains Pfam match to entry PF01312 Bac_export_2%2C FlhB HrpN YscU SpaS Family%2C score 405.40%2C E-value 5.2e-118%3B~Updated (2006) note: Four probable transmembrace helices identified by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Surface structures%3B~PMID:8299954%2C PMID:15919996;gbkey=CDS;gene=flhB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0335;product=flagellar biosynthetic protein;protein_id=CAL34486.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	303110	304135	.	+	.	ID=id-Cj0335;Note=HMMPfam hit to PF01312%2C FlhB HrpN YscU SpaS Family%2Cscore 2.4e-119;gbkey=misc_feature;gene=flhB;inference=protein motif:Pfam:PF01312;locus_tag=Cj0335
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	303191	303259	.	+	.	ID=id-Cj0335-2;Note=4 probable transmembrane helices predicted for Cj0335 by TMHMM2.0 at aa 32-54%2C 83-105%2C 141-163 and 188-210;gbkey=misc_feature;gene=flhB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0335;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	303344	303412	.	+	.	ID=id-Cj0335-2;Note=4 probable transmembrane helices predicted for Cj0335 by TMHMM2.0 at aa 32-54%2C 83-105%2C 141-163 and 188-210;gbkey=misc_feature;gene=flhB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0335;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	303518	303586	.	+	.	ID=id-Cj0335-2;Note=4 probable transmembrane helices predicted for Cj0335 by TMHMM2.0 at aa 32-54%2C 83-105%2C 141-163 and 188-210;gbkey=misc_feature;gene=flhB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0335;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	303659	303727	.	+	.	ID=id-Cj0335-2;Note=4 probable transmembrane helices predicted for Cj0335 by TMHMM2.0 at aa 32-54%2C 83-105%2C 141-163 and 188-210;gbkey=misc_feature;gene=flhB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0335;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	304192	304935	.	-	.	ID=gene-Cj0336c;Name=motB;gbkey=Gene;gene=motB;gene_biotype=protein_coding;locus_tag=Cj0336c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	304192	304935	.	-	0	ID=cds-CAL34487.1;Parent=gene-Cj0336c;Dbxref=EnsemblGenomes-Gn:Cj0336c,EnsemblGenomes-Tr:CAL34487,GOA:Q0PBH3,InterPro:IPR006665,InterPro:IPR025713,UniProtKB/TrEMBL:Q0PBH3,NCBI_GP:CAL34487.1;Name=CAL34487.1;Note=Original (2000) note: Cj0336c%2C motB%2C possible flagellar motor protein%2C len: 247 aa%3B similar to MOTB_BACSU chemotaxis motB protein (motility protein B) (261 aa)%2C fasta scores%3B opt: 195 z-score: 275.7 E(): 4.2e-08%2C 30.7%25 identity in 261 aa overlap. 43.3%25 identity to HP0816. Contains Pfam match to entry PF00691 OmpA%2C OmpA family%2C score 28.50%2C E-value 5.6e-07%3B~Updated (2006) note: One probable transmembrace helices identified by TMHMM2.0 within CDS. Some characterisation within Bacillus subtilis with marginal identity score. Putative kept within product function. Functional classification - Surface structures%3B~PMID:1624413;gbkey=CDS;gene=motB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0336c;product=putative flagellar motor protein;protein_id=CAL34487.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	304285	304572	.	-	.	ID=id-Cj0336c;Note=HMMPfam hit to PF00691%2C OmpA family%2C score 9.1e-07;gbkey=misc_feature;gene=motB;inference=protein motif:Pfam:PF00691;locus_tag=Cj0336c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	304822	304890	.	-	.	ID=id-Cj0336c-2;Note=1 probable transmembrane helix predicted for Cj0336c by TMHMM2.0 at aa 16-38;gbkey=misc_feature;gene=motB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0336c
gi|15791399|ref|NC_002163.1|	EMBL	gene	304938	305714	.	-	.	ID=gene-Cj0337c;Name=motA;gbkey=Gene;gene=motA;gene_biotype=protein_coding;locus_tag=Cj0337c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	304938	305714	.	-	0	ID=cds-CAL34488.1;Parent=gene-Cj0337c;Dbxref=EnsemblGenomes-Gn:Cj0337c,EnsemblGenomes-Tr:CAL34488,GOA:Q0PBH2,InterPro:IPR000540,InterPro:IPR002898,UniProtKB/TrEMBL:Q0PBH2,NCBI_GP:CAL34488.1;Name=CAL34488.1;Note=Original (2000) note: Cj0337c%2C motA%2C probable flagellar motor proton channel%2C len: 258 aa%3B similar to e.g. MOTA_BACSU chemotaxis motA protein (motility protein A) (270 aa)%2C fasta scores%3B opt: 493 z-score: 784.5 E(): 0%2C34.0%25 identity in 259 aa overlap. 58.6%25 identity to HP0815. Contains PS01307 Flagellar motor protein motA family signature%3B~Updated (2006) note: Three probable transmembrace helices identified by TMHMM2.0 within CDS. Pfam domain PF01618 MotA/TolQ/ExbB proton channel family protein identified within CDS. Further support given to product function. Some characterisation work carried out within Bacillus subtilis with marginal identity score. Putative kept within product function. Functional classification -Surface structures%3B~PMID:1624413;gbkey=CDS;gene=motA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0337c;product=putative flagellar motor proton channel;protein_id=CAL34488.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	305112	305180	.	-	.	ID=id-Cj0337c;Note=3 probable transmembrane helices predicted for Cj0337c by TMHMM2.0 at aa 28-50%2C 147-169 and 179-201;gbkey=misc_feature;gene=motA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0337c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	305208	305276	.	-	.	ID=id-Cj0337c;Note=3 probable transmembrane helices predicted for Cj0337c by TMHMM2.0 at aa 28-50%2C 147-169 and 179-201;gbkey=misc_feature;gene=motA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0337c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	305565	305633	.	-	.	ID=id-Cj0337c;Note=3 probable transmembrane helices predicted for Cj0337c by TMHMM2.0 at aa 28-50%2C 147-169 and 179-201;gbkey=misc_feature;gene=motA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0337c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	305034	305447	.	-	.	ID=id-Cj0337c-2;Note=HMMPfam hit to PF01618%2C MotA/TolQ/ExbB proton channel family%2C score 5.5e-09;gbkey=misc_feature;gene=motA;inference=protein motif:Pfam:PF01618;locus_tag=Cj0337c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	305109	305162	.	-	.	ID=id-Cj0337c-3;Note=PS01307 Flagellar motor protein motA family signature;gbkey=misc_feature;gene=motA;inference=protein motif:Prosite:PS01307;locus_tag=Cj0337c
gi|15791399|ref|NC_002163.1|	EMBL	gene	305730	308369	.	-	.	ID=gene-Cj0338c;Name=polA;gbkey=Gene;gene=polA;gene_biotype=protein_coding;locus_tag=Cj0338c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	305730	308369	.	-	0	ID=cds-CAL34489.1;Parent=gene-Cj0338c;Dbxref=EnsemblGenomes-Gn:Cj0338c,EnsemblGenomes-Tr:CAL34489,GOA:Q0PBH1,InterPro:IPR001098,InterPro:IPR002298,InterPro:IPR002421,InterPro:IPR002562,InterPro:IPR008918,InterPro:IPR012337,InterPro:IPR018320,InterPro:IPR019760,InterPro:IPR020045,InterPro:IPR020046,InterPro:IPR029060,UniProtKB/TrEMBL:Q0PBH1,NCBI_GP:CAL34489.1;Name=CAL34489.1;Note=Original (2000) note: Cj0338c%2C polA%2C probable DNA polymerase I%2C len: 879 aa%3B similar to many e.g. DPO1_ECOLI DNA POLYMERASE I (EC 2.7.7.7) (928 aa)%2C fasta scores%3B opt: 1262 z-score: 1530.0 E(): 0%2C 36.1%25 identity in 920 aa overlap. 40.0%25 identity to HP1470. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00447 DNA polymerase family A signature%2C Pfam match to entry PF00929 Exonuclease%2C Exonuclease%2C score -10.70%2C E-value 0.0024%2Cand Pfam match to entry PF00476 DNA_pol_A%2C DNA polymerase family A%2C score 210.40%2C E-value 2.8e-59%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:7035456;gbkey=CDS;gene=polA;inference=protein motif:Prosite:PS00447;locus_tag=Cj0338c;product=DNA polymerase I;protein_id=CAL34489.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	305736	306854	.	-	.	ID=id-Cj0338c;Note=HMMPfam hit to PF00476%2C DNA polymerase family A%2Cscore 3.2e-110;gbkey=misc_feature;gene=polA;inference=protein motif:Pfam:PF00476;locus_tag=Cj0338c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	306186	306245	.	-	.	ID=id-Cj0338c-2;Note=PS00447 DNA polymerase family A signature;gbkey=misc_feature;gene=polA;inference=protein motif:Prosite:PS00447;locus_tag=Cj0338c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	306936	307481	.	-	.	ID=id-Cj0338c-3;Note=HMMPfam hit to PF01612%2C 3'-5' exonuclease%2C score 3e-25;gbkey=misc_feature;gene=polA;inference=protein motif:Pfam:PF01612;locus_tag=Cj0338c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	307575	307871	.	-	.	ID=id-Cj0338c-4;Note=HMMPfam hit to PF01367%2C 5'-3' exonuclease%2CC-terminal SAM fold%2C score 4.4e-42;gbkey=misc_feature;gene=polA;inference=protein motif:Pfam:PF01367;locus_tag=Cj0338c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	307875	308366	.	-	.	ID=id-Cj0338c-5;Note=HMMPfam hit to PF02739%2C 5'-3' exonuclease%2CN-terminal resolvase-%2C score 5.4e-48;gbkey=misc_feature;gene=polA;inference=protein motif:Pfam:PF02739;locus_tag=Cj0338c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	308181	308204	.	-	.	ID=id-Cj0338c-6;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=polA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0338c
gi|15791399|ref|NC_002163.1|	EMBL	gene	308533	309894	.	+	.	ID=gene-Cj0339;Name=Cj0339;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0339
gi|15791399|ref|NC_002163.1|	EMBL	CDS	308533	309894	.	+	0	ID=cds-CAL34490.1;Parent=gene-Cj0339;Dbxref=EnsemblGenomes-Gn:Cj0339,EnsemblGenomes-Tr:CAL34490,GOA:Q0PBH0,InterPro:IPR005828,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0PBH0,NCBI_GP:CAL34490.1;Name=CAL34490.1;Note=Original (2000) note: Cj0339%2C probable transmembrane transport protein%2C len: 453 aa%3B similar to e.g. YDFJ_ECOLI hypothetical metabolite transport protein (427 aa)%2C fasta scores%3B opt: 1214 z-score: 1428.6 E(): 0%2C42.5%25 identity in 416 aa overlap%2C and SHIA_ECOLI shikimate transporter (438 aa)%2C fasta scores%3B opt: 876 z-score: 1104.0 E(): 0%2C 32.3%25 identity in 421 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00083 sugar_tr%2CSugar (and other) transporters%2C score 123.20%2C E-value 4.9e-33%3B~Updated (2006) note: Ten probable transmembrace helices identified by TMHMM2.0 within CDS. Pfam domain PF07690 Major Facilitator Superfamily protein identified within CDS. Prosite PS50850 MFS%2C Major facilitator superfamily also identifed within CDS. Product modified to new family member based on motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification -Transport/binding proteins - Other%3B~PMID:15919996;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0339;product=putative MFS (Major Facilitator Superfamily) transport protein;protein_id=CAL34490.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	308605	309891	.	+	.	ID=id-Cj0339;Note=HMMPfam hit to PF00083%2C Sugar (and other) transporter%2C score 1.3e-35;gbkey=misc_feature;inference=protein motif:Pfam:PF00083;locus_tag=Cj0339
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	308620	308688	.	+	.	ID=id-Cj0339-2;Note=10 probable transmembrane helices predicted for Cj0339 by TMHMM2.0 at aa 30-52%2C 62-84%2C 105-127%2C 164-186%2C198-220%2C 294-316%2C 323-342%2C 352-374%2C 394-413 and 417-439;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0339;part=1/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	308716	308784	.	+	.	ID=id-Cj0339-2;Note=10 probable transmembrane helices predicted for Cj0339 by TMHMM2.0 at aa 30-52%2C 62-84%2C 105-127%2C 164-186%2C198-220%2C 294-316%2C 323-342%2C 352-374%2C 394-413 and 417-439;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0339;part=2/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	308845	308913	.	+	.	ID=id-Cj0339-2;Note=10 probable transmembrane helices predicted for Cj0339 by TMHMM2.0 at aa 30-52%2C 62-84%2C 105-127%2C 164-186%2C198-220%2C 294-316%2C 323-342%2C 352-374%2C 394-413 and 417-439;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0339;part=3/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	309022	309090	.	+	.	ID=id-Cj0339-2;Note=10 probable transmembrane helices predicted for Cj0339 by TMHMM2.0 at aa 30-52%2C 62-84%2C 105-127%2C 164-186%2C198-220%2C 294-316%2C 323-342%2C 352-374%2C 394-413 and 417-439;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0339;part=4/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	309124	309192	.	+	.	ID=id-Cj0339-2;Note=10 probable transmembrane helices predicted for Cj0339 by TMHMM2.0 at aa 30-52%2C 62-84%2C 105-127%2C 164-186%2C198-220%2C 294-316%2C 323-342%2C 352-374%2C 394-413 and 417-439;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0339;part=5/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	309412	309480	.	+	.	ID=id-Cj0339-2;Note=10 probable transmembrane helices predicted for Cj0339 by TMHMM2.0 at aa 30-52%2C 62-84%2C 105-127%2C 164-186%2C198-220%2C 294-316%2C 323-342%2C 352-374%2C 394-413 and 417-439;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0339;part=6/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	309499	309558	.	+	.	ID=id-Cj0339-2;Note=10 probable transmembrane helices predicted for Cj0339 by TMHMM2.0 at aa 30-52%2C 62-84%2C 105-127%2C 164-186%2C198-220%2C 294-316%2C 323-342%2C 352-374%2C 394-413 and 417-439;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0339;part=7/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	309586	309654	.	+	.	ID=id-Cj0339-2;Note=10 probable transmembrane helices predicted for Cj0339 by TMHMM2.0 at aa 30-52%2C 62-84%2C 105-127%2C 164-186%2C198-220%2C 294-316%2C 323-342%2C 352-374%2C 394-413 and 417-439;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0339;part=8/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	309712	309771	.	+	.	ID=id-Cj0339-2;Note=10 probable transmembrane helices predicted for Cj0339 by TMHMM2.0 at aa 30-52%2C 62-84%2C 105-127%2C 164-186%2C198-220%2C 294-316%2C 323-342%2C 352-374%2C 394-413 and 417-439;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0339;part=9/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	309781	309849	.	+	.	ID=id-Cj0339-2;Note=10 probable transmembrane helices predicted for Cj0339 by TMHMM2.0 at aa 30-52%2C 62-84%2C 105-127%2C 164-186%2C198-220%2C 294-316%2C 323-342%2C 352-374%2C 394-413 and 417-439;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0339;part=10/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	308620	309768	.	+	.	ID=id-Cj0339-3;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 2.5e-24;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj0339
gi|15791399|ref|NC_002163.1|	EMBL	gene	309891	310898	.	+	.	ID=gene-Cj0340;Name=Cj0340;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0340
gi|15791399|ref|NC_002163.1|	EMBL	CDS	309891	310898	.	+	0	ID=cds-CAL34491.1;Parent=gene-Cj0340;Dbxref=EnsemblGenomes-Gn:Cj0340,EnsemblGenomes-Tr:CAL34491,GOA:Q0PBG9,InterPro:IPR001910,InterPro:IPR023186,UniProtKB/TrEMBL:Q0PBG9,NCBI_GP:CAL34491.1;Name=CAL34491.1;Note=Original (2000) note: Cj0340%2C possible nucleoside hydrolase%2C len: 335 aa%3B similar to hypothetical proteins e.g. YAAF_ECOLI (304 aa)%2C fasta scores%3B opt: 252 z-score: 377.2 E(): 9.4e-14%2C 25.9%25 identity in 309 aa overlap%2C and to the eukaryotic IUNH_CRIFA inosine-uridine preferring nucleoside hydrolase (314 aa)%2C fasta scores%3B opt: 261 z-score: 363.4 E(): 5.5e-13%2C 25.3%25 identity in 296 aa overlap. No Hp match. Contains Pfam match to entry PF01156 IU_nuc_hydro%2C Inosine-uridine preferring nucleoside hydrolase%2C score -11.20%2C E-value 4.8e-12%3B~Updated (2006) note: No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Salvage of nucleosides and nucleotides%3B~PMID:10409664;gbkey=CDS;inference=protein motif:Pfam:PF01156;locus_tag=Cj0340;product=putative nucleoside hydrolase;protein_id=CAL34491.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	309891	310808	.	+	.	ID=id-Cj0340;Note=HMMPfam hit to PF01156%2C Inosine-uridine preferring nucleoside hy%2C score 5.1e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF01156;locus_tag=Cj0340
gi|15791399|ref|NC_002163.1|	EMBL	gene	310854	311297	.	-	.	ID=gene-Cj0341c;Name=Cj0341c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0341c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	310854	311297	.	-	0	ID=cds-CAL34492.1;Parent=gene-Cj0341c;Dbxref=EnsemblGenomes-Gn:Cj0341c,EnsemblGenomes-Tr:CAL34492,InterPro:IPR015414,UniProtKB/TrEMBL:Q0PBG8,NCBI_GP:CAL34492.1;Name=CAL34492.1;Note=Original (2000) note: Cj0341c%2C possible integral membrane protein%2C len: 147 aa%3B similar to hypothetical membrane proteins e.g. Y489_HAEIN HI0489 (157 aa)%2C fasta scores%3B opt: 252 z-score: 350.5 E(): 2.9e-12%2C 34.0%25 identity in 159 aa overlap. No Hp match%3B~Updated (2006) note: Four probable transmembrace helices identified by TMHMM2.0 within CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0341c;product=putative integral membrane protein;protein_id=CAL34492.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	310866	310925	.	-	.	ID=id-Cj0341c;Note=4 probable transmembrane helices predicted for Cj0341c by TMHMM2.0 at aa 15-37%2C 44-66%2C 96-118 and 125-144;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0341c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	310944	311012	.	-	.	ID=id-Cj0341c;Note=4 probable transmembrane helices predicted for Cj0341c by TMHMM2.0 at aa 15-37%2C 44-66%2C 96-118 and 125-144;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0341c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	311100	311168	.	-	.	ID=id-Cj0341c;Note=4 probable transmembrane helices predicted for Cj0341c by TMHMM2.0 at aa 15-37%2C 44-66%2C 96-118 and 125-144;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0341c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	311187	311255	.	-	.	ID=id-Cj0341c;Note=4 probable transmembrane helices predicted for Cj0341c by TMHMM2.0 at aa 15-37%2C 44-66%2C 96-118 and 125-144;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0341c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	gene	311302	314127	.	-	.	ID=gene-Cj0342c;Name=uvrA;gbkey=Gene;gene=uvrA;gene_biotype=protein_coding;locus_tag=Cj0342c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	311302	314127	.	-	0	ID=cds-CAL34493.1;Parent=gene-Cj0342c;Dbxref=EnsemblGenomes-Gn:Cj0342c,EnsemblGenomes-Tr:CAL34493,GOA:Q0PBG7,InterPro:IPR003439,InterPro:IPR004602,InterPro:IPR013815,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PBG7,NCBI_GP:CAL34493.1;Name=CAL34493.1;Note=Original (2000) note: Cj0342c%2C uvrA%2C probable excinuclease ABC subunit A%2C len: 941 aa%3B highly similar to many e.g. UVRA_ECOLI excinuclease ABC subunit A (940 aa)%2Cfasta scores%3B opt: 1914 z-score: 3636.7 E(): 0%2C 51.4%25 identity in 935 aa overlap. 68.6%25 identity to HP0705. Contains 2x PS00017 ATP/GTP-binding site motif A (P-loop)%2C2x PS00211 ABC transporters family signature and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%2C score 71.80%2C E-value 1.4e-17%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:1826851;gbkey=CDS;gene=uvrA;inference=protein motif:Prosite:PS00211;locus_tag=Cj0342c;product=excinuclease ABC subunit A;protein_id=CAL34493.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	311437	312255	.	-	.	ID=id-Cj0342c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 9.1e-19;gbkey=misc_feature;gene=uvrA;inference=protein motif:Pfam:PF00005;locus_tag=Cj0342c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	311620	311664	.	-	.	ID=id-Cj0342c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=uvrA;inference=protein motif:Prosite:PS00211;locus_tag=Cj0342c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	312211	312234	.	-	.	ID=id-Cj0342c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=uvrA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0342c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	312637	312681	.	-	.	ID=id-Cj0342c-4;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=uvrA;inference=protein motif:Prosite:PS00211;locus_tag=Cj0342c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314011	314034	.	-	.	ID=id-Cj0342c-5;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=uvrA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0342c
gi|15791399|ref|NC_002163.1|	EMBL	gene	314200	314985	.	-	.	ID=gene-Cj0343c;Name=Cj0343c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0343c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	314200	314985	.	-	0	ID=cds-CAL34494.1;Parent=gene-Cj0343c;Dbxref=EnsemblGenomes-Gn:Cj0343c,EnsemblGenomes-Tr:CAL34494,GOA:Q0PBG6,InterPro:IPR002781,UniProtKB/TrEMBL:Q0PBG6,NCBI_GP:CAL34494.1;Name=CAL34494.1;Note=Original (2000) note: Cj0343c%2C probable integral membrane protein%2C len: 261 aa%3B similar to many hypothetical membrane proteins e.g. Y441_METJA MJ0441 (267 aa)%2C fasta scores%3B opt: 152 z-score: 301.8 E(): 1.5e-09%2C30.7%25 identity in 257 aa overlap. 45.1%25 identity to HP0677 and 44.0%25 identity to HP0226%3B~Updated (2006) note: Nine probable transmembrace helices identified by TMHMM2.0 within CDS. Pfam PF01925 Domain of unknown function (DUF81) protein identified within CDS. Further support given to product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0343c;product=putative integral membrane protein;protein_id=CAL34494.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314209	314277	.	-	.	ID=id-Cj0343c;Note=9 probable transmembrane helices predicted for Cj0343c by TMHMM2.0 at aa 9-31%2C 41-63%2C 75-92%2C 97-119%2C131-148%2C 152-169%2C 174-193%2C 203-225 and 237-259;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0343c;part=1/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314311	314379	.	-	.	ID=id-Cj0343c;Note=9 probable transmembrane helices predicted for Cj0343c by TMHMM2.0 at aa 9-31%2C 41-63%2C 75-92%2C 97-119%2C131-148%2C 152-169%2C 174-193%2C 203-225 and 237-259;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0343c;part=2/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314407	314466	.	-	.	ID=id-Cj0343c;Note=9 probable transmembrane helices predicted for Cj0343c by TMHMM2.0 at aa 9-31%2C 41-63%2C 75-92%2C 97-119%2C131-148%2C 152-169%2C 174-193%2C 203-225 and 237-259;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0343c;part=3/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314479	314532	.	-	.	ID=id-Cj0343c;Note=9 probable transmembrane helices predicted for Cj0343c by TMHMM2.0 at aa 9-31%2C 41-63%2C 75-92%2C 97-119%2C131-148%2C 152-169%2C 174-193%2C 203-225 and 237-259;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0343c;part=4/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314542	314595	.	-	.	ID=id-Cj0343c;Note=9 probable transmembrane helices predicted for Cj0343c by TMHMM2.0 at aa 9-31%2C 41-63%2C 75-92%2C 97-119%2C131-148%2C 152-169%2C 174-193%2C 203-225 and 237-259;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0343c;part=5/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314629	314697	.	-	.	ID=id-Cj0343c;Note=9 probable transmembrane helices predicted for Cj0343c by TMHMM2.0 at aa 9-31%2C 41-63%2C 75-92%2C 97-119%2C131-148%2C 152-169%2C 174-193%2C 203-225 and 237-259;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0343c;part=6/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314710	314763	.	-	.	ID=id-Cj0343c;Note=9 probable transmembrane helices predicted for Cj0343c by TMHMM2.0 at aa 9-31%2C 41-63%2C 75-92%2C 97-119%2C131-148%2C 152-169%2C 174-193%2C 203-225 and 237-259;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0343c;part=7/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314797	314865	.	-	.	ID=id-Cj0343c;Note=9 probable transmembrane helices predicted for Cj0343c by TMHMM2.0 at aa 9-31%2C 41-63%2C 75-92%2C 97-119%2C131-148%2C 152-169%2C 174-193%2C 203-225 and 237-259;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0343c;part=8/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314893	314961	.	-	.	ID=id-Cj0343c;Note=9 probable transmembrane helices predicted for Cj0343c by TMHMM2.0 at aa 9-31%2C 41-63%2C 75-92%2C 97-119%2C131-148%2C 152-169%2C 174-193%2C 203-225 and 237-259;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0343c;part=9/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314239	314970	.	-	.	ID=id-Cj0343c-2;Note=HMMPfam hit to PF01925%2C Domain of unknown function DUF81%2C score 2.6e-34;gbkey=misc_feature;inference=protein motif:Pfam:PF01925;locus_tag=Cj0343c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	314659	314691	.	-	.	ID=id-Cj0343c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0343c
gi|15791399|ref|NC_002163.1|	EMBL	gene	315108	315233	.	+	.	ID=gene-Cj0344;Name=Cj0344;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0344
gi|15791399|ref|NC_002163.1|	EMBL	CDS	315108	315233	.	+	0	ID=cds-CAL34495.1;Parent=gene-Cj0344;Dbxref=EnsemblGenomes-Gn:Cj0344,EnsemblGenomes-Tr:CAL34495,UniProtKB/TrEMBL:Q0PBG5,NCBI_GP:CAL34495.1;Name=CAL34495.1;Note=Original (2000) note: Cj0344%2C unknown%2C len: 41 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0344;product=hypothetical protein Cj0344;protein_id=CAL34495.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	315398	316648	.	+	.	ID=gene-Cj0345;Name=trpE;gbkey=Gene;gene=trpE;gene_biotype=protein_coding;locus_tag=Cj0345
gi|15791399|ref|NC_002163.1|	EMBL	CDS	315398	316648	.	+	0	ID=cds-CAL34496.1;Parent=gene-Cj0345;Dbxref=EnsemblGenomes-Gn:Cj0345,EnsemblGenomes-Tr:CAL34496,GOA:Q0PBG4,InterPro:IPR005801,InterPro:IPR015890,InterPro:IPR019999,UniProtKB/TrEMBL:Q0PBG4,NCBI_GP:CAL34496.1;Name=CAL34496.1;Note=Original (2000) note: Cj0345%2C trpE%2C possible anthranilate synthase component I%2C len: 416 aa%3B similar in C-terminal half to many e.g. TRPE_CLOTM anthranilate synthase component I (EC 4.1.3.27) (494 aa)%2C fasta scores%3B opt: 784 z-score: 1209.9 E(): 0%2C 47.0%25 identity in 281 aa overlap. 35.6%25 identity in 365 aa overlap to HP1282. Contains Pfam match to entry PF00425 chorismate_bind%2Cchorismate binding enzyme%2C score 309.50%2C E-value 3.9e-89%3B~Updated (2006) note: Characterised within Clostridium thermocellum with acceptable identity score%2Chowever%2C sequence alignment was only partial. Thus%2Cputative kept within product function. Functional classification - Amino acid biosynthesis - Aromatic amino acid family%3B~PMID:2732211%2C PMID:789357;gbkey=CDS;gene=trpE;inference=protein motif:Pfam:PF00425;locus_tag=Cj0345;product=putative anthranilate synthase component I;protein_id=CAL34496.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	315842	316621	.	+	.	ID=id-Cj0345;Note=HMMPfam hit to PF00425%2C chorismate binding enzyme%2Cscore 1.1e-90;gbkey=misc_feature;gene=trpE;inference=protein motif:Pfam:PF00425;locus_tag=Cj0345
gi|15791399|ref|NC_002163.1|	EMBL	gene	316645	318246	.	+	.	ID=gene-Cj0346;Name=trpD (trpGD);gbkey=Gene;gene=trpD (trpGD);gene_biotype=protein_coding;locus_tag=Cj0346
gi|15791399|ref|NC_002163.1|	EMBL	CDS	316645	318246	.	+	0	ID=cds-CAL34497.1;Parent=gene-Cj0346;Dbxref=EnsemblGenomes-Gn:Cj0346,EnsemblGenomes-Tr:CAL34497,GOA:Q0PBG3,InterPro:IPR000312,InterPro:IPR005940,InterPro:IPR006221,InterPro:IPR017926,InterPro:IPR029062,UniProtKB/TrEMBL:Q0PBG3,NCBI_GP:CAL34497.1;Name=CAL34497.1;Note=Original (2000) note: Cj0346%2C trpD (trpGD)%2Cprobable anthranilate synthase component II%2C len: 533 aa%3B (contains glutamine amidotransferase and anthranilate phosphoribosyltransferase) similar to many e.g. TRPG_ECOLI anthranilate synthase component II (EC 4.1.3.27) (530 aa)%2Cfasta scores%3B opt: 866 z-score: 781.3 E(): 0%2C 32.6%25 identity in 528 aa overlap. N-terminus has 34.6%25 identity to HP1281%2C C-terminus is 33.2%25 identity to HP1280. Contains PS00442 Glutamine amidotransferases class-I active site and Pfam matches to entry PF00117 GATase%2CGlutamine amidotransferases class-I%2C score 252.00%2C E-value 8.4e-72 and to entry PF00591 Glycos_transf_3%2C glycosyl transferase family%2C score 138.60%2C E-value 1.1e-37%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Aromatic amino acid family%3B~PMID:6283099%2C PMID:4594441%2C PMID:789357;gbkey=CDS;gene=trpD (trpGD);inference=protein motif:Prosite:PS00442;locus_tag=Cj0346;product=anthranilate synthase component II;protein_id=CAL34497.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	316651	317205	.	+	.	ID=id-Cj0346;Note=HMMPfam hit to PF00117%2C Glutamine amidotransferase class-I%2C score 5.4e-61;gbkey=misc_feature;gene=trpD (trpGD);inference=protein motif:Pfam:PF00117;locus_tag=Cj0346
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	316864	316899	.	+	.	ID=id-Cj0346-2;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=trpD (trpGD);inference=protein motif:Prosite:PS00442;locus_tag=Cj0346
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	317443	318207	.	+	.	ID=id-Cj0346-3;Note=HMMPfam hit to PF00591%2C Glycosyl transferase family%2C a/b doma%2C score 2.5e-78;gbkey=misc_feature;gene=trpD (trpGD);inference=protein motif:Pfam:PF00591;locus_tag=Cj0346
gi|15791399|ref|NC_002163.1|	EMBL	gene	318233	318832	.	+	.	ID=gene-Cj0347;Name=trpF;gbkey=Gene;gene=trpF;gene_biotype=protein_coding;locus_tag=Cj0347
gi|15791399|ref|NC_002163.1|	EMBL	CDS	318233	318832	.	+	0	ID=cds-CAL34498.1;Parent=gene-Cj0347;Dbxref=EnsemblGenomes-Gn:Cj0347,EnsemblGenomes-Tr:CAL34498,GOA:Q9PIF3,InterPro:IPR001240,InterPro:IPR011060,InterPro:IPR013785,NCBI_GP:CAL34498.1;Name=CAL34498.1;Note=Original (2000) note: Cj0347%2C trpF%2C probable N-(5'-phosphoribosyl)anthranilate isomerase%2C len: 199 aa%3B similar to many trpF e.g. TRPF_LACCA N-(5'-phosphoribosyl)anthranilate isomerase (199 aa) (EC 5.3.1.24)%2C fasta scores%3B opt: 271 z-score: 352.4 E(): 2.3e-12%2C 31.0%25 identity in 200 aa overlap%2C and to the trpF domain of many trpC proteins e.g. TRPC_SALTY indole-3-glycerol phosphate synthase%2C fasta scores%3B opt: 307 z-score: 394.5 E(): 1e-14%2C 30.8%25 identity in 201 aa overlap. 38.2%25 identity to C-terminus of HP1279 (trpC) Conatains Pfam match to entry PF00697 PRAI%2CN-(5'phosphoribosyl)antranilate (PRA) isomerase%2C score 102.30%2C E-value 9.5e-27%3B~Updated (2006) note: Search results match to more than one isomerase with marginal identity scores. Putative not added to product function. Functional classification -Amino acid biosynthesis - Aromatic amino acid family%3B~PMID:2299982%2C PMID:2184433%2C PMID:789357;gbkey=CDS;gene=trpF;inference=protein motif:Pfam:PF00697;locus_tag=Cj0347;product=N-(5'-phosphoribosyl)anthranilate isomerase;protein_id=CAL34498.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	318242	318820	.	+	.	ID=id-Cj0347;Note=HMMPfam hit to PF00697%2CN-(5'phosphoribosyl)anthranilate (PRA) isome%2C score 4.5e-31;gbkey=misc_feature;gene=trpF;inference=protein motif:Pfam:PF00697;locus_tag=Cj0347
gi|15791399|ref|NC_002163.1|	EMBL	gene	318829	320007	.	+	.	ID=gene-Cj0348;Name=trpB;gbkey=Gene;gene=trpB;gene_biotype=protein_coding;locus_tag=Cj0348
gi|15791399|ref|NC_002163.1|	EMBL	CDS	318829	320007	.	+	0	ID=cds-CAL34499.1;Parent=gene-Cj0348;Dbxref=EnsemblGenomes-Gn:Cj0348,EnsemblGenomes-Tr:CAL34499,GOA:Q9PIF2,InterPro:IPR001926,InterPro:IPR006653,InterPro:IPR006654,InterPro:IPR023026,NCBI_GP:CAL34499.1;Name=CAL34499.1;Note=Original (2000) note: Cj0348%2C trpB%2C probable tryptophan synthase beta chain%2C len: 392 aa%3B highly similar to many e.g. TRPB_THEMA tryptophan synthase beta chain (EC 4.2.1.20) (389 aa)%2C fasta scores%3B opt: 1476 z-score: 2082.2 E(): 0%2C 59.9%25 identity in 384 aa overlap. 56.4%25 identity to HP1278. Conatains PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site%2CPS00017 ATP/GTP-binding site motif A (P-loop)%2C and Pfam match to entry PF00247 trp_syntB%2C Tryptophan synthases%2Cbeta chain%2C score 806.40%2C E-value 1e-238%3B~Updated (2006) note: Pfam domain PF00291 Pyridoxal-phosphate dependent enzyme protein identified within CDS. Further support given to product function. Characterised within Thermotoga maritima with acceptable identity score. Putative not added to product function. Functional classification - Amino acid biosynthesis -Aromatic amino acid family%3B~PMID:7556082%2C PMID:789357;gbkey=CDS;gene=trpB;inference=protein motif:Prosite:PS00168;locus_tag=Cj0348;product=tryptophan synthase beta chain;protein_id=CAL34499.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	318967	319950	.	+	.	ID=id-Cj0348;Note=HMMPfam hit to PF00291%2C Pyridoxal-phosphate dependent enzyme%2C score 1.8e-108;gbkey=misc_feature;gene=trpB;inference=protein motif:Pfam:PF00291;locus_tag=Cj0348
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	319057	319086	.	+	.	ID=id-Cj0348-2;Note=PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=trpB;inference=protein motif:Prosite:PS00168;locus_tag=Cj0348
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	319621	319644	.	+	.	ID=id-Cj0348-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=trpB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0348
gi|15791399|ref|NC_002163.1|	EMBL	gene	320000	320749	.	+	.	ID=gene-Cj0349;Name=trpA;gbkey=Gene;gene=trpA;gene_biotype=protein_coding;locus_tag=Cj0349
gi|15791399|ref|NC_002163.1|	EMBL	CDS	320000	320749	.	+	0	ID=cds-CAL34500.1;Parent=gene-Cj0349;Dbxref=EnsemblGenomes-Gn:Cj0349,EnsemblGenomes-Tr:CAL34500,GOA:Q9PIF1,InterPro:IPR002028,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR018204,PDB:3THA,NCBI_GP:CAL34500.1;Name=CAL34500.1;Note=Original (2000) note: Cj0349%2C trpA%2C probable tryptophan synthase alpha chain%2C len: 249 aa%3B similar to many e.g. TRPA_LACLA tryptophan synthase alpha chain (EC 4.2.1.20) (253 aa)%2C fasta scores%3B opt: 525 z-score: 854.2 E(): 0%2C 38.5%25 identity in 239 aa overlap. 30.3%25 identity to HP1277. Contains PS00167 Tryptophan synthase alpha chain signature and Pfam match to entry PF00290 trp_syntA%2CTryptophan synthase alpha chain%2C score 260.90%2C E-value 1.8e-74%3B~Updated (2006) note: Characterised within Lactococcus lactis with acceptable identity scores. Putative not added to product function. Functional classification - Amino acid biosynthesis - Aromatic amino acid family%3B~PMID:1400208%2C PMID:789357;gbkey=CDS;gene=trpA;inference=protein motif:Prosite:PS00167;locus_tag=Cj0349;product=tryptophan synthase alpha chain;protein_id=CAL34500.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	320009	320746	.	+	.	ID=id-Cj0349;Note=HMMPfam hit to PF00290%2C Tryptophan synthase alpha chain%2C score 2.2e-73;gbkey=misc_feature;gene=trpA;inference=protein motif:Pfam:PF00290;locus_tag=Cj0349
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	320123	320164	.	+	.	ID=id-Cj0349-2;Note=PS00167 Tryptophan synthase alpha chain signature;gbkey=misc_feature;gene=trpA;inference=protein motif:Prosite:PS00167;locus_tag=Cj0349
gi|15791399|ref|NC_002163.1|	EMBL	gene	320820	321242	.	+	.	ID=gene-Cj0350;Name=Cj0350;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0350
gi|15791399|ref|NC_002163.1|	EMBL	CDS	320820	321242	.	+	0	ID=cds-CAL34501.1;Parent=gene-Cj0350;Dbxref=EnsemblGenomes-Gn:Cj0350,EnsemblGenomes-Tr:CAL34501,InterPro:IPR028051,InterPro:IPR028976,UniProtKB/TrEMBL:Q0PBF9,NCBI_GP:CAL34501.1;Name=CAL34501.1;Note=Original (2000) note: Cj0350%2C unknown%2C len: 140 aa%3B no Hp match. . Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0350;product=hypothetical protein Cj0350;protein_id=CAL34501.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	321242	321550	.	+	.	ID=gene-Cj0351;Name=fliN;gbkey=Gene;gene=fliN;gene_biotype=protein_coding;locus_tag=Cj0351
gi|15791399|ref|NC_002163.1|	EMBL	CDS	321242	321550	.	+	0	ID=cds-CAL34502.1;Parent=gene-Cj0351;Dbxref=EnsemblGenomes-Gn:Cj0351,EnsemblGenomes-Tr:CAL34502,GOA:Q0PBF8,InterPro:IPR001172,InterPro:IPR001543,UniProtKB/TrEMBL:Q0PBF8,NCBI_GP:CAL34502.1;Name=CAL34502.1;Note=Original (2000) note: Cj0351%2C fliN%2C flagellar motor switch protein%2C len: 102 aa%3B identical to TR:O32370 (EMBL:AJ000400)%2C and similar to many e.g. FLIN_ECOLI flagellar motor switch protein FLIN (137 aa)%2C fasta scores%3B opt: 196 z-score: 359.1 E(): 9.5e-13%2C 36.0%25 identity in 89 aa overlap. 53.4%25 identity to HP0584%3B~Updated (2006) note: Pfam PF01052 Surface presentation of antigens (SPOA) protein identified within CDS. Further support given to product function. Characterisation paper identified within Campylobacter jejuni and also Escherichia coli. Putative not added to product function. Functional classification - Surface structures%3B~PMID:9894591%2C PMID:2651416;gbkey=CDS;gene=fliN;inference=protein motif:Pfam:PF01052;locus_tag=Cj0351;product=flagellar motor switch protein;protein_id=CAL34502.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	321287	321517	.	+	.	ID=id-Cj0351;Note=HMMPfam hit to PF01052%2C Surface presentation of antigens (SPOA) prot%2C score 9e-34;gbkey=misc_feature;gene=fliN;inference=protein motif:Pfam:PF01052;locus_tag=Cj0351
gi|15791399|ref|NC_002163.1|	EMBL	gene	321551	322348	.	+	.	ID=gene-Cj0352;Name=Cj0352;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0352
gi|15791399|ref|NC_002163.1|	EMBL	CDS	321551	322348	.	+	0	ID=cds-CAL34503.1;Parent=gene-Cj0352;Dbxref=EnsemblGenomes-Gn:Cj0352,EnsemblGenomes-Tr:CAL34503,GOA:Q0PBF7,UniProtKB/TrEMBL:Q0PBF7,NCBI_GP:CAL34503.1;Name=CAL34503.1;Note=Original (2000) note: Cj0352%2C probable transmembrane protein%2C len: 265 aa%3B 99.6%25 identity to TR:O32371 (EMBL:AJ000400). No Hp match. Contains probable N-terminal signal sequence and transmembrane domain around aa 160%3B~Updated (2006) note: Two probable transmembrane helices identified by TMHMM2.0 within CDS. Literature search identified paper linking CDS with potential new functional assignment as FliO flagellar protein. Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:15817382%2C PMID:9894591;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0352;product=putative transmembrane protein;protein_id=CAL34503.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	321563	321622	.	+	.	ID=id-Cj0352;Note=2 probable transmembrane helices predicted for Cj0352 by TMHMM2.0 at aa 5-24 and 153-170;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0352;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	322007	322060	.	+	.	ID=id-Cj0352;Note=2 probable transmembrane helices predicted for Cj0352 by TMHMM2.0 at aa 5-24 and 153-170;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0352;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	322345	323805	.	-	.	ID=gene-Cj0353c;Name=Cj0353c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0353c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	322345	323805	.	-	0	ID=cds-CAL34504.1;Parent=gene-Cj0353c;Dbxref=EnsemblGenomes-Gn:Cj0353c,EnsemblGenomes-Tr:CAL34504,GOA:Q0PBF6,InterPro:IPR003695,UniProtKB/TrEMBL:Q0PBF6,NCBI_GP:CAL34504.1;Name=CAL34504.1;Note=Original (2000) note: Cj0353c%2C probable phosphatase%2C len: 486 aa%3B similar to e.g. GPPA_ECOLI guanosine-5'-triphosphate%2C3'-diphosphate pyrophosphatase (EC 3.6.1.40) (494 aa)%2C fasta scores%3B opt: 368 z-score: 272.7 E(): 6.2e-08%2C 25.8%25 identity in 480 aa overlap%2C and to PPX_ECOLI EXOPOLYPHOSPHATASE (EC 3.6.1.11) (512 aa)%2Cfasta scores%3B opt: 340 z-score: 350.9 E(): 2.7e-12%2C 23.8%25 identity in 441 aa overlap. 41.0%25 identity to HP0278%3B~Updated (2006) note: Pfam domain PF02541 Ppx/GppA phosphatase family identified within CDS. Further support given to product function. Similar to many different annotated phosphatases. Putative not added to product function. Functional classification - Misc%3B~PMID:8394006;gbkey=CDS;inference=protein motif:Pfam:PF02541;locus_tag=Cj0353c;product=phosphatase;protein_id=CAL34504.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	322906	323754	.	-	.	ID=id-Cj0353c;Note=HMMPfam hit to PF02541%2C Ppx/GppA phosphatase family%2C score 1.5e-46;gbkey=misc_feature;inference=protein motif:Pfam:PF02541;locus_tag=Cj0353c
gi|15791399|ref|NC_002163.1|	EMBL	gene	323805	324050	.	-	.	ID=gene-Cj0354c;Name=fdxB;gbkey=Gene;gene=fdxB;gene_biotype=protein_coding;locus_tag=Cj0354c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	323805	324050	.	-	0	ID=cds-CAL34505.1;Parent=gene-Cj0354c;Dbxref=EnsemblGenomes-Gn:Cj0354c,EnsemblGenomes-Tr:CAL34505,GOA:Q0PBF5,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q0PBF5,NCBI_GP:CAL34505.1;Name=CAL34505.1;Note=Original (2000) note: Cj0354c%2C fdxB%2C probable ferredoxin%2C len: 81 aa%3B similar to many e.g. FER_CHRVI ferredoxin (82 aa)%2C fasta scores%3B opt: 282 z-score: 445.5 E(): 1.5e-17%2C 45.3%25 identity in 75 aa overlap. 58.4%25 identity to HP0277. Also similar to Cj0333c (fdx)%3B 38.8%25 identity in 67 aa overlap. Contains PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature and Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains.%2C score 39.00%2CE-value 4.8e-10%3B~Updated (2006) note: Characterised within Chromatium vinosum with acceptable identity scores. Appropriate motifs also present. Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:8765743;gbkey=CDS;gene=fdxB;inference=protein motif:Prosite:PS00198;locus_tag=Cj0354c;product=ferredoxin;protein_id=CAL34505.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	323976	324047	.	-	.	ID=id-Cj0354c;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.0069;gbkey=misc_feature;gene=fdxB;inference=protein motif:Pfam:PF00037;locus_tag=Cj0354c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	323991	324026	.	-	.	ID=id-Cj0354c-2;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=fdxB;inference=protein motif:Prosite:PS00198;locus_tag=Cj0354c
gi|15791399|ref|NC_002163.1|	EMBL	gene	324163	324834	.	-	.	ID=gene-Cj0355c;Name=Cj0355c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0355c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	324163	324834	.	-	0	ID=cds-CAL34506.1;Parent=gene-Cj0355c;Dbxref=EnsemblGenomes-Gn:Cj0355c,EnsemblGenomes-Tr:CAL34506,GOA:Q0PBF4,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:Q0PBF4,NCBI_GP:CAL34506.1;Name=CAL34506.1;Note=Original (2000) note: Cj0355c%2C probable two-component regulator%2C len: 223 aa%3B similar to many e.g. CZCR_ALCEU transcriptional activator protein CZCR (225 aa)%2C fasta scores%3B opt: 375 z-score: 570.8 E(): 1.5e-24%2C31.7%25 identity in 218 aa overlap. 59.9%25 identity to HP1043. Contains Pfam match to entry PF00072 response_reg%2CResponse regulator receiver domain%2C score 70.70%2C E-value 3.1e-17 and Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%2C score 56.60%2C E-value 1.5e-15%3B~Updated (2006) note: Characterisation work within many e.g. Ralstonia metallidurans and Escherichia coli with marginal identity scores. Appropriate motifs also present. Putative not added to product function. Literature search identified paper giving further clues to product function (PMID:15901688). Functional classification - Signal transduction%3B~PMID:9044283%2C PMID:15901688;gbkey=CDS;inference=protein motif:Pfam:PF00486;locus_tag=Cj0355c;product=two-component regulator;protein_id=CAL34506.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	324184	324411	.	-	.	ID=id-Cj0355c;Note=HMMPfam hit to PF00486%2C Transcriptional regulatory protein%2C C te%2C score 4.2e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF00486;locus_tag=Cj0355c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	324475	324834	.	-	.	ID=id-Cj0355c-2;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 4e-19;gbkey=misc_feature;inference=protein motif:Pfam:PF00072;locus_tag=Cj0355c
gi|15791399|ref|NC_002163.1|	EMBL	gene	324913	325230	.	-	.	ID=gene-Cj0356c;Name=folB;gbkey=Gene;gene=folB;gene_biotype=protein_coding;locus_tag=Cj0356c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	324913	325230	.	-	0	ID=cds-CAL34507.1;Parent=gene-Cj0356c;Dbxref=EnsemblGenomes-Gn:Cj0356c,EnsemblGenomes-Tr:CAL34507,GOA:Q0PBF3,InterPro:IPR006157,UniProtKB/TrEMBL:Q0PBF3,NCBI_GP:CAL34507.1;Name=CAL34507.1;Note=Original (2000) note: Cj0356c%2C unknown%2C len: 105 aa%3B 31.0%25 identity to HP1510%3B~Updated (2006) note: Pfam domain PF02152 FolB Dihydroneopterin aldolase was identified within CDS. This enzyme catalyses the conversion of 7%2C8-dihydroneopterin to 6-hydroxymethyl-7%2C8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. This was found by carrying out own Pfam search. Product modified to new family member due to motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;gene=folB;inference=protein motif:Pfam:PF02152;locus_tag=Cj0356c;product=putative dihydroneopterin aldolase;protein_id=CAL34507.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	325218	325229	.	-	.	ID=id-Cj0356c;Note=PS00294 Prenyl group binding site (CAAX box);gbkey=misc_feature;gene=folB;inference=protein motif:Prosite:PS00294;locus_tag=Cj0356c
gi|15791399|ref|NC_002163.1|	EMBL	gene	325215	325823	.	-	.	ID=gene-Cj0357c;Name=Cj0357c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0357c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	325215	325823	.	-	0	ID=cds-CAL34508.1;Parent=gene-Cj0357c;Dbxref=EnsemblGenomes-Gn:Cj0357c,EnsemblGenomes-Tr:CAL34508,GOA:Q9PIE4,InterPro:IPR003811,NCBI_GP:CAL34508.1;Name=CAL34508.1;Note=Original (2000) note: Cj0357c%2C probable integral membrane protein%2C len: 202 aa%3B similar to many hypothetical integral membrane proteins e.g. YGIH_ECOLI (205 aa)%2C fasta scores%3B opt: 254 z-score: 373.5 E(): 1.5e-13%2C 29.2%25 identity in 192 aa overlap. 40.7%25 identity to HP1509%3B~Updated (2006) note: Five probable transmembrace helices identified by TMHMM2.0 within CDS. Pfam PPF02660 Domain of unknown function DUF family identified within CDS. Further support given to product product. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0357c;product=putative integral membrane protein;protein_id=CAL34508.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	325239	325307	.	-	.	ID=id-Cj0357c;Note=5 probable transmembrane helices predicted for Cj0357c by TMHMM2.0 at aa 5-27%2C 85-107%2C 117-139%2C 144-163 and 173-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0357c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	325335	325394	.	-	.	ID=id-Cj0357c;Note=5 probable transmembrane helices predicted for Cj0357c by TMHMM2.0 at aa 5-27%2C 85-107%2C 117-139%2C 144-163 and 173-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0357c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	325407	325475	.	-	.	ID=id-Cj0357c;Note=5 probable transmembrane helices predicted for Cj0357c by TMHMM2.0 at aa 5-27%2C 85-107%2C 117-139%2C 144-163 and 173-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0357c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	325503	325571	.	-	.	ID=id-Cj0357c;Note=5 probable transmembrane helices predicted for Cj0357c by TMHMM2.0 at aa 5-27%2C 85-107%2C 117-139%2C 144-163 and 173-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0357c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	325743	325811	.	-	.	ID=id-Cj0357c;Note=5 probable transmembrane helices predicted for Cj0357c by TMHMM2.0 at aa 5-27%2C 85-107%2C 117-139%2C 144-163 and 173-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0357c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	325236	325805	.	-	.	ID=id-Cj0357c-2;Note=HMMPfam hit to PF02660%2C Domain of unknown function DUF%2C score 1.3e-44;gbkey=misc_feature;inference=protein motif:Pfam:PF02660;locus_tag=Cj0357c
gi|15791399|ref|NC_002163.1|	EMBL	gene	326024	327049	.	+	.	ID=gene-Cj0358;Name=Cj0358;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0358
gi|15791399|ref|NC_002163.1|	EMBL	CDS	326024	327049	.	+	0	ID=cds-CAL34509.1;Parent=gene-Cj0358;Dbxref=EnsemblGenomes-Gn:Cj0358,EnsemblGenomes-Tr:CAL34509,GOA:Q0PBF1,InterPro:IPR003088,InterPro:IPR004852,InterPro:IPR009056,InterPro:IPR026259,UniProtKB/TrEMBL:Q0PBF1,NCBI_GP:CAL34509.1;Name=CAL34509.1;Note=Original (2000) note: Cj0358%2C probable cytochrome C551 peroxidase%2C len: 341 aa%3B similar to e.g. CCPR_PSEAE cytochrome C551 peroxidase precursor (EC 1.11.1.5) (346 aa)%2C fasta scores%3B opt: 281 z-score: 1028.0 E(): 0%2C 48.9%25 identity in 313 aa overlap. 58.5%25 identity to HP1461. Also similar to Cj0020c (45.4%25 identity in 273 aa overlap). Contains 2x PS00190 Cytochrome c family heme-binding site signature and probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF03150 Di-haem cytochrome c peroxidase identified within CDS. Further support given to product function. Characterised within Pseudomonas aeruginosa with acceptable identity score%2Chowever%2C only partial sequence alignment was achieved. Putative kept within product function. Functional classification - Detoxification%3B~PMID:7781769%2C PMID:8591033;gbkey=CDS;inference=protein motif:Prosite:PS00190;locus_tag=Cj0358;product=putative cytochrome C551 peroxidase;protein_id=CAL34509.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	326123	326650	.	+	.	ID=id-Cj0358;Note=HMMPfam hit to PF03150%2C Di-haem cytochrome c peroxidase%2C score 1.4e-78;gbkey=misc_feature;inference=protein motif:Pfam:PF03150;locus_tag=Cj0358
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	326261	326278	.	+	.	ID=id-Cj0358-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0358
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	326696	326713	.	+	.	ID=id-Cj0358-3;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0358
gi|15791399|ref|NC_002163.1|	EMBL	gene	327143	328480	.	+	.	ID=gene-Cj0360;Name=glmM;gbkey=Gene;gene=glmM;gene_biotype=protein_coding;locus_tag=Cj0360
gi|15791399|ref|NC_002163.1|	EMBL	CDS	327143	328480	.	+	0	ID=cds-CAL34510.1;Parent=gene-Cj0360;Dbxref=EnsemblGenomes-Gn:Cj0360,EnsemblGenomes-Tr:CAL34510,GOA:Q9PIE2,InterPro:IPR005841,InterPro:IPR005843,InterPro:IPR005844,InterPro:IPR005845,InterPro:IPR005846,InterPro:IPR006352,InterPro:IPR016055,InterPro:IPR016066,NCBI_GP:CAL34510.1;Name=CAL34510.1;Note=Original (2000) note: Cj0360%2C probable phospho-sugar mutase%2C len: 445 aa%3B similar to phosphomannomutases and phosphoglucomutases and to e.g. UREC_HELPY putative urease operon UREC protein (HP0075) (445 aa)%2C fasta scores%3B opt: 1834 z-score: 1863.3 E(): 0%2C63.7%25 identity in 444 aa overlap%2C and MRSA_ECOLI MRSA protein (445 aa)%2C fasta scores%3B opt: 1107 z-score: 1449.7 E(): 0%2C 42.7%25 identity in 429 aa overlap. Contains PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature and Pfam match to entry PF00408 PGM_PMM%2CPhosphoglucomutase and phosphomannomutase%2C score 499.10%2CE-value 3.5e-146%3B~Updated (2006) note: Pfam domains PF02878%2C PF02879 and PF02880 Phosphoglucomutase/phosphomannomutase were identied within CDS. Further support given to product function. Characterised in more than one speicies e.g. Helicobacter pylori and Escherichia coli%2C with acceptable identity score. Based on characterisation papers%2C product function modified to more specific family member. Putative removed from product function. Functional classification -Misc%3B~PMID:8550580%2C PMID:10913078%2C PMID:9171391;gbkey=CDS;gene=glmM;inference=protein motif:Prosite:PS00710;locus_tag=Cj0360;product=phosphoglucosamine mutase;protein_id=CAL34510.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	327143	327553	.	+	.	ID=id-Cj0360;Note=HMMPfam hit to PF02878%2CPhosphoglucomutase/phosphomannomutase%2C al%2C score 2.8e-60;gbkey=misc_feature;gene=glmM;inference=protein motif:Pfam:PF02878;locus_tag=Cj0360
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	327419	327463	.	+	.	ID=id-Cj0360-2;Note=PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature;gbkey=misc_feature;gene=glmM;inference=protein motif:Prosite:PS00710;locus_tag=Cj0360
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	327611	327913	.	+	.	ID=id-Cj0360-3;Note=HMMPfam hit to PF02879%2CPhosphoglucomutase/phosphomannomutase%2C al%2C score 2.6e-37;gbkey=misc_feature;gene=glmM;inference=protein motif:Pfam:PF02879;locus_tag=Cj0360
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	327917	328261	.	+	.	ID=id-Cj0360-4;Note=HMMPfam hit to PF02880%2CPhosphoglucomutase/phosphomannomutase%2C al%2C score 2.5e-31;gbkey=misc_feature;gene=glmM;inference=protein motif:Pfam:PF02880;locus_tag=Cj0360
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	328262	328465	.	+	.	ID=id-Cj0360-5;Note=HMMPfam hit to PF00408%2CPhosphoglucomutase/phosphomannomutase%2C C-%2C score 5.8e-06;gbkey=misc_feature;gene=glmM;inference=protein motif:Pfam:PF00408;locus_tag=Cj0360
gi|15791399|ref|NC_002163.1|	EMBL	gene	328473	328943	.	+	.	ID=gene-Cj0361;Name=lspA;gbkey=Gene;gene=lspA;gene_biotype=protein_coding;locus_tag=Cj0361
gi|15791399|ref|NC_002163.1|	EMBL	CDS	328473	328943	.	+	0	ID=cds-CAL34511.1;Parent=gene-Cj0361;Dbxref=EnsemblGenomes-Gn:Cj0361,EnsemblGenomes-Tr:CAL34511,GOA:Q0PBE9,InterPro:IPR001872,NCBI_GP:CAL34511.1;Name=CAL34511.1;Note=Original (2000) note: Cj0361%2C lspA%2C probable lipoprotein signal peptidase%2C len: 156 aa%3B similar to e.g. LSPA_ECOLI lipoprotein signal peptidase (EC 3.4.23.36) (164 aa)%2C fasta scores%3B opt: 216 z-score: 326.7 E(): 6.1e-11%2C 32.0%25 identity in 153 aa overlap. 52.0%25 identity to HP0074. Contains PS00855 Signal peptidases II signature and Pfam match to entry PF01252 SPASE_II%2C Signal peptidase (SPase) II%2C score 144.90%2C E-value 1.4e-39%3B~Updated (2006) note: Four probable transmembrace helices identified by TMHMM2.0 within CDS. Pfam domain PF01252 Signal peptidase (SPase) II identified within CDS. Further support given to product function. Characterised within Eschreichia coli with marginal identity score. Putative not added to product function. Functional classification - Protein and peptide secretion%3B~PMID:6378662%2C PMID:15919996;gbkey=CDS;gene=lspA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0361;product=lipoprotein signal peptidase;protein_id=CAL34511.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	328491	328544	.	+	.	ID=id-Cj0361;Note=4 probable transmembrane helices predicted for Cj0361 by TMHMM2.0 at aa 7-24%2C 39-58%2C 65-84 and 120-142;gbkey=misc_feature;gene=lspA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0361;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	328587	328646	.	+	.	ID=id-Cj0361;Note=4 probable transmembrane helices predicted for Cj0361 by TMHMM2.0 at aa 7-24%2C 39-58%2C 65-84 and 120-142;gbkey=misc_feature;gene=lspA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0361;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	328665	328724	.	+	.	ID=id-Cj0361;Note=4 probable transmembrane helices predicted for Cj0361 by TMHMM2.0 at aa 7-24%2C 39-58%2C 65-84 and 120-142;gbkey=misc_feature;gene=lspA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0361;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	328830	328898	.	+	.	ID=id-Cj0361;Note=4 probable transmembrane helices predicted for Cj0361 by TMHMM2.0 at aa 7-24%2C 39-58%2C 65-84 and 120-142;gbkey=misc_feature;gene=lspA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0361;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	328497	328931	.	+	.	ID=id-Cj0361-2;Note=HMMPfam hit to PF01252%2C Signal peptidase (SPase) II%2C score 9.9e-41;gbkey=misc_feature;gene=lspA;inference=protein motif:Pfam:PF01252;locus_tag=Cj0361
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	328758	328790	.	+	.	ID=id-Cj0361-3;Note=PS00855 Signal peptidases II signature;gbkey=misc_feature;gene=lspA;inference=protein motif:Prosite:PS00855;locus_tag=Cj0361
gi|15791399|ref|NC_002163.1|	EMBL	gene	328927	329379	.	+	.	ID=gene-Cj0362;Name=Cj0362;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0362
gi|15791399|ref|NC_002163.1|	EMBL	CDS	328927	329379	.	+	0	ID=cds-CAL34512.1;Parent=gene-Cj0362;Dbxref=EnsemblGenomes-Gn:Cj0362,EnsemblGenomes-Tr:CAL34512,InterPro:IPR005265,InterPro:IPR014351,UniProtKB/TrEMBL:Q0PBE8,NCBI_GP:CAL34512.1;Name=CAL34512.1;Note=Original (2000) note: Cj0362%2C probable integral membrane protein%2C len: 150 aa%3B similar to hypothetical proteins e.g. TR:Q53231 (EMBL:L76097) from Rhodobacter sphaeroides (154 aa)%2C fasta scores%3B opt: 301 z-score: 419.6 E(): 4.1e-16%2C 34.2%25 identity in 149 aa overlap. 47.6%25 identity to HP1484%3B~Updated (2006) note: Four probable transmembrace helices identified by TMHMM2.0 within CDS. Pfam domain PF03653 Uncharacterised protein family (UPF0093) identified within CDS. Further support given to product function. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0362;product=putative integral membrane protein;protein_id=CAL34512.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	328939	329376	.	+	.	ID=id-Cj0362;Note=HMMPfam hit to PF03653%2C Uncharacterised protein family (UPF0093)%2C score 9e-53;gbkey=misc_feature;inference=protein motif:Pfam:PF03653;locus_tag=Cj0362
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	328969	329034	.	+	.	ID=id-Cj0362-2;Note=4 probable transmembrane helices predicted for Cj0362 by TMHMM2.0 at aa 15-36%2C 57-79%2C 83-105 and 126-148;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0362;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	329095	329163	.	+	.	ID=id-Cj0362-2;Note=4 probable transmembrane helices predicted for Cj0362 by TMHMM2.0 at aa 15-36%2C 57-79%2C 83-105 and 126-148;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0362;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	329173	329241	.	+	.	ID=id-Cj0362-2;Note=4 probable transmembrane helices predicted for Cj0362 by TMHMM2.0 at aa 15-36%2C 57-79%2C 83-105 and 126-148;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0362;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	329302	329370	.	+	.	ID=id-Cj0362-2;Note=4 probable transmembrane helices predicted for Cj0362 by TMHMM2.0 at aa 15-36%2C 57-79%2C 83-105 and 126-148;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0362;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	329376	330722	.	-	.	ID=gene-Cj0363c;Name=hemN;gbkey=Gene;gene=hemN;gene_biotype=protein_coding;locus_tag=Cj0363c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	329376	330722	.	-	0	ID=cds-CAL34513.1;Parent=gene-Cj0363c;Dbxref=EnsemblGenomes-Gn:Cj0363c,EnsemblGenomes-Tr:CAL34513,GOA:Q0PBE7,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR023404,UniProtKB/TrEMBL:Q0PBE7,NCBI_GP:CAL34513.1;Name=CAL34513.1;Note=Original (2000) note: Cj0363c%2C probable oxidoreductase%2C len: 448 aa%3B some similarity to e.g. HEMN_BACSU probable oxygen-independent coproporphyrinogen III oxidase (366 aa)%2C fasta scores%3B opt: 354 z-score: 228.9 E(): 1.7e-05%2C 26.6%25 identity in 368 aa overlap. No Hp ortholog%3B~Updated (2006) note: Pfam domains PF06969 HemN C-terminal region and PF04055 Radical SAM superfamily were identified within CDS. Further support given to product function. Characterised within Bacillus subtilis and many others with marginal identity score. Putative kept within product function. Product function modified to more specific family member based on recent characterisation papers. Functional classification - Misc%3B~PMID:7768836%2C PMID:12114526%2C PMID:10498703;gbkey=CDS;gene=hemN;inference=protein motif:Pfam:PF06969;locus_tag=Cj0363c;product=putative oxygen-independent coproporphyrinogen III oxidase;protein_id=CAL34513.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	329541	329870	.	-	.	ID=id-Cj0363c;Note=HMMPfam hit to PF06969%2C HemN C-terminal region%2Cscore 0.0012;gbkey=misc_feature;gene=hemN;inference=protein motif:Pfam:PF06969;locus_tag=Cj0363c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	330084	330587	.	-	.	ID=id-Cj0363c-2;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 3.4e-21;gbkey=misc_feature;gene=hemN;inference=protein motif:Pfam:PF04055;locus_tag=Cj0363c
gi|15791399|ref|NC_002163.1|	EMBL	gene	330851	331102	.	+	.	ID=gene-Cj0364;Name=Cj0364;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0364
gi|15791399|ref|NC_002163.1|	EMBL	CDS	330851	331102	.	+	0	ID=cds-CAL34514.1;Parent=gene-Cj0364;Dbxref=EnsemblGenomes-Gn:Cj0364,EnsemblGenomes-Tr:CAL34514,UniProtKB/TrEMBL:Q0PBE6,NCBI_GP:CAL34514.1;Name=CAL34514.1;Note=Original (2000) note: Cj0364%2C unknown%2C len: 83 aa%3B no Hp match%3B~Updated (2006) note: Literature search identified paper giving further clues to product function. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0364;product=hypothetical protein Cj0364;protein_id=CAL34514.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	331125	332603	.	-	.	ID=gene-Cj0365c;Name=cmeC;gbkey=Gene;gene=cmeC;gene_biotype=protein_coding;locus_tag=Cj0365c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	331125	332603	.	-	0	ID=cds-CAL34515.1;Parent=gene-Cj0365c;Dbxref=EnsemblGenomes-Gn:Cj0365c,EnsemblGenomes-Tr:CAL34515,GOA:Q0PBE5,InterPro:IPR003423,InterPro:IPR010131,UniProtKB/TrEMBL:Q0PBE5,NCBI_GP:CAL34515.1;Name=CAL34515.1;Note=Original (2000) note: Cj0365c%2C possible outer membrane channel protein%2C len: 492 aa%3B similar to members of the nodT/fusA family e.g. TR:O31101 (EMBL:AF029405) Pseudomonas putida outer membrane channel protein SRPC (470 aa)%2C fasta scores%3B opt: 645 z-score: 834.4 E(): 0%2C29.2%25 identity in 465 aa overlap. and TR:Q51006 (EMBL:X95635) Neisseria gonorrhoeae mtrE gene (467 aa%2Cfasta scores%3B opt: 663 z-score: 829.8 E(): 0%2C 31.1%25 identity in 476 aa overlap. No Hp match. Also some similarity to Cj0608 (28.6%25 identity in 455 aa overlap). Contains N-terminal signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domains x2 PF02321 Outer membrane efflux proteins were identified within CDS. Further support given to product function. Characterised within Campylobacter jejuni. Part of the CmeABC multidrug efflux system. Functional classification - Antibiotic resistance%3B~PMID:12069964%2C PMID:15728904%2C PMID:16359189;gbkey=CDS;gene=cmeC;inference=protein motif:Prosite:PS00013;locus_tag=Cj0365c;product=outer membrane channel protein CmeC (multidrug efflux system CmeABC);protein_id=CAL34515.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	331206	331766	.	-	.	ID=id-Cj0365c;Note=HMMPfam hit to PF02321%2C Outer membrane efflux protein%2C score 1.6e-27;gbkey=misc_feature;gene=cmeC;inference=protein motif:Pfam:PF02321;locus_tag=Cj0365c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	331836	332411	.	-	.	ID=id-Cj0365c-2;Note=HMMPfam hit to PF02321%2C Outer membrane efflux protein%2C score 3.2e-33;gbkey=misc_feature;gene=cmeC;inference=protein motif:Pfam:PF02321;locus_tag=Cj0365c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	332544	332576	.	-	.	ID=id-Cj0365c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=cmeC;inference=protein motif:Prosite:PS00013;locus_tag=Cj0365c
gi|15791399|ref|NC_002163.1|	EMBL	gene	332596	335718	.	-	.	ID=gene-Cj0366c;Name=cmeB;gbkey=Gene;gene=cmeB;gene_biotype=protein_coding;locus_tag=Cj0366c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	332596	335718	.	-	0	ID=cds-CAL34516.1;Parent=gene-Cj0366c;Dbxref=EnsemblGenomes-Gn:Cj0366c,EnsemblGenomes-Tr:CAL34516,GOA:Q0PBE4,InterPro:IPR000731,InterPro:IPR001036,InterPro:IPR004764,InterPro:IPR027463,UniProtKB/TrEMBL:Q0PBE4,NCBI_GP:CAL34516.1;Name=CAL34516.1;Note=Original (2000) note: Cj0366c%2C probable transmembrane efflux protein%2C len: 1040 aa%3B similar to e.g. TR:P95422 (EMBL:X99514) Pseudomonas aeruginosa mexF (antibiotic efflux system protein) (1062 aa)%2C fasta scores%3B opt: 1584 z-score: 3208.4 E(): 0%2C 41.2%25 identity in 1056 aa overlap%2C and ACRB_ECOLI acriflavin resistance protein B (1049 aa)%2C fasta scores%3B opt: 2739 z-score: 3055.6 E(): 0%2C 41.7%25 identity in 1031 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00873 ACR_tran%2CAcrB/AcrD/AcrF family%2C score 1415.10%2C E-value 0%3B~Updated (2006) note: Thirteen probable transmembrace helices identified by TMHMM2.0 within CDS. Prosite domain PS50156 SSD%2C Sterol-sensing 5TM box also identified within CDS. Further support given to product function. Characterised within Campylobacter jejuni. Part of the CmeABC multidrug efflux system. Functional classification - Antibiotic resistance%3B~PMID:12069964%2C PMID:11814661%2C PMID:15728904%2CPMID:16359189%2C PMID:15201231;gbkey=CDS;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;product=inner membrane efflux transporter CmeB (multidrug efflux system CmeABC);protein_id=CAL34516.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	332647	332715	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=1/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	332758	332826	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=2/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	332887	332955	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=3/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	332983	333051	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=4/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	333070	333123	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=5/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	334033	334101	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=6/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	334120	334173	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=7/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	334216	334284	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=8/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	334318	334386	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=9/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	334474	334542	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=10/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	334555	334623	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=11/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	334636	334695	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=12/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	335623	335691	.	-	.	ID=id-Cj0366c;Note=13 probable transmembrane helices predicted for Cj0366c by TMHMM2.0 at aa 10-32%2C 342-361%2C 366-388%2C393-415%2C 445-467%2C 479-501%2C 516-533%2C 540-562%2C 866-883%2C890-912%2C 922-944%2C 965-987 and 1002-1024;gbkey=misc_feature;gene=cmeB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0366c;part=13/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	332644	335715	.	-	.	ID=id-Cj0366c-2;Note=HMMPfam hit to PF00873%2C AcrB/AcrD/AcrF family%2Cscore 0;gbkey=misc_feature;gene=cmeB;inference=protein motif:Pfam:PF00873;locus_tag=Cj0366c
gi|15791399|ref|NC_002163.1|	EMBL	gene	335718	336821	.	-	.	ID=gene-Cj0367c;Name=cmeA;gbkey=Gene;gene=cmeA;gene_biotype=protein_coding;locus_tag=Cj0367c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	335718	336821	.	-	0	ID=cds-CAL34517.1;Parent=gene-Cj0367c;Dbxref=EnsemblGenomes-Gn:Cj0367c,EnsemblGenomes-Tr:CAL34517,GOA:Q0PBE3,InterPro:IPR006143,UniProtKB/TrEMBL:Q0PBE3,NCBI_GP:CAL34517.1;Name=CAL34517.1;Note=Original (2000) note: Cj0367c%2C possible membrane fusion component of efflux system%2C len: 367 aa%3B similar to e.g. MTRC_NEIGO membrane fusion protein MTRC precursor (412 aa)%2C fasta scores%3B opt: 592 z-score: 692.4 E(): 2.6e-31%2C 29.9%25 identity in 358 aa overlap%2C and TR:P95421 (EMBL:X99514) Pseudomonas aeruginosa mexE (antibiotic efflux system protein) (414 aa)%2C fasta scores%3B opt: 460 z-score: 570.0 E(): 1.7e-24%2C 26.9%25 identity in 357 aa overlap. No Hp ortholog. Contains N-terminal signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domain PF00529 HlyD family secretion protein identified within CDS. Further support given to product function. Part of the CmeABC multidrug efflux system. Functional classification -Antibiotic resistance%3B~PMID:12069964%2C PMID:15728904%2C PMID:16359189;gbkey=CDS;gene=cmeA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0367c;product=periplasmic fusion protein CmeA (multidrug efflux system CmeABC);protein_id=CAL34517.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	335775	336644	.	-	.	ID=id-Cj0367c;Note=HMMPfam hit to PF00529%2C HlyD family secretion protein%2C score 2.9e-21;gbkey=misc_feature;gene=cmeA;inference=protein motif:Pfam:PF00529;locus_tag=Cj0367c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	336759	336791	.	-	.	ID=id-Cj0367c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=cmeA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0367c
gi|15791399|ref|NC_002163.1|	EMBL	gene	336916	337548	.	-	.	ID=gene-Cj0368c;Name=cmeR;gbkey=Gene;gene=cmeR;gene_biotype=protein_coding;locus_tag=Cj0368c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	336916	337548	.	-	0	ID=cds-CAL34518.1;Parent=gene-Cj0368c;Dbxref=EnsemblGenomes-Gn:Cj0368c,EnsemblGenomes-Tr:CAL34518,GOA:Q0PBE2,InterPro:IPR001647,InterPro:IPR009057,InterPro:IPR015893,UniProtKB/TrEMBL:Q0PBE2,NCBI_GP:CAL34518.1;Name=CAL34518.1;Note=Original (2000) note: Cj0368c%2C probable transcriptional regulatory protein%2C len: 210 aa%3B similar to members of the tetR family e.g. TR:G3327947 (EMBL:AF053772) Staphylococcus aureus transcriptional regulator qacR (regulator of multidrug efflux protein QacB) (188 aa)%2C fasta scores%3B opt: 162 z-score: 285.0 E(): 1.3e-08%2C 29.3%25 identity in 198 aa overlap%2C and MTRR_NEIGO regulatory protein MTRR (210 aa)%2C fasta scores%3B opt: 137 z-score: 210.6 E(): 0.00018%2C 31.3%25 identity in 83 aa overlap. No Hp match. Contains Pfam match to entry PF00440 tetR%2C Bacterial regulatory proteins%2C tetR family%2C score 24.00%2C E-value 6.4e-05%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Product function modified to more speicific family member. Characterisation paper shows that CmeR is a transcriptional repressor for the downstream CmeABC operon. Functional classification - Broad regulatory functions%3B~PMID:15728904;gbkey=CDS;gene=cmeR;inference=protein motif:Pfam:PF00440;locus_tag=Cj0368c;product=transcriptional regulator CmeR;protein_id=CAL34518.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	337357	337497	.	-	.	ID=id-Cj0368c;Note=HMMPfam hit to PF00440%2C Bacterial regulatory proteins%2C tetR family%2C score 7.1e-10;gbkey=misc_feature;gene=cmeR;inference=protein motif:Pfam:PF00440;locus_tag=Cj0368c
gi|15791399|ref|NC_002163.1|	EMBL	gene	337535	338911	.	-	.	ID=gene-Cj0369c;Name=Cj0369c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0369c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	337535	338911	.	-	0	ID=cds-CAL34519.1;Parent=gene-Cj0369c;Dbxref=EnsemblGenomes-Gn:Cj0369c,EnsemblGenomes-Tr:CAL34519,GOA:Q0PBE1,InterPro:IPR001450,InterPro:IPR013783,InterPro:IPR014116,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q0PBE1,NCBI_GP:CAL34519.1;Name=CAL34519.1;Note=Original (2000) note: Cj0369c%2C ferredoxin domain-containing integral membrane protein%2C len: 458 aa%3B some similarity to e.g. RDXA_RHOSH RDXA protein (469 aa)%2Cfasta scores%3B opt: 474 z-score: 657.7 E(): 2.2e-29%2C 24.9%25 identity in 402 aa overlap%2C and FIXG_RHIME nitrogen fixation protein FIXG (524 aa)%2C fasta scores%3B opt: 476 z-score: 533.8 E(): 1.8e-22%2C 28.7%25 identity in 296 aa overlap. 45.7%25 identity to HP1508. Contains PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature and Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains.%2C score 17.10%2CE-value 0.0011%3B~Updated (2006) note: Five probable transmembrace helices identified by TMHMM2.0 within CDS. Further support given to product function. No specific characterisation with acceptable identity scores identified yet. Putative kept within product function. Functional classification -Energy metabolism - Electron transport;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0369c;product=putative ferredoxin domain-containing integral membrane protein;protein_id=CAL34519.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	337946	338014	.	-	.	ID=id-Cj0369c;Note=5 probable transmembrane helices predicted for Cj0369c by TMHMM2.0 at aa 13-31%2C 58-80%2C 127-149%2C 164-186 and 300-322;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0369c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	338354	338422	.	-	.	ID=id-Cj0369c;Note=5 probable transmembrane helices predicted for Cj0369c by TMHMM2.0 at aa 13-31%2C 58-80%2C 127-149%2C 164-186 and 300-322;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0369c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	338465	338533	.	-	.	ID=id-Cj0369c;Note=5 probable transmembrane helices predicted for Cj0369c by TMHMM2.0 at aa 13-31%2C 58-80%2C 127-149%2C 164-186 and 300-322;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0369c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	338672	338740	.	-	.	ID=id-Cj0369c;Note=5 probable transmembrane helices predicted for Cj0369c by TMHMM2.0 at aa 13-31%2C 58-80%2C 127-149%2C 164-186 and 300-322;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0369c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	338819	338875	.	-	.	ID=id-Cj0369c;Note=5 probable transmembrane helices predicted for Cj0369c by TMHMM2.0 at aa 13-31%2C 58-80%2C 127-149%2C 164-186 and 300-322;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0369c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	338153	338224	.	-	.	ID=id-Cj0369c-2;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.0014;gbkey=misc_feature;inference=protein motif:Pfam:PF00037;locus_tag=Cj0369c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	338168	338203	.	-	.	ID=id-Cj0369c-3;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00198;locus_tag=Cj0369c
gi|15791399|ref|NC_002163.1|	EMBL	gene	339071	339283	.	+	.	ID=gene-Cj0370;Name=rpsU;gbkey=Gene;gene=rpsU;gene_biotype=protein_coding;locus_tag=Cj0370
gi|15791399|ref|NC_002163.1|	EMBL	CDS	339071	339283	.	+	0	ID=cds-CAL34520.1;Parent=gene-Cj0370;Dbxref=EnsemblGenomes-Gn:Cj0370,EnsemblGenomes-Tr:CAL34520,GOA:Q9PID2,InterPro:IPR001911,NCBI_GP:CAL34520.1;Name=CAL34520.1;Note=Original (2000) note: Cj0370%2C rpsU%2C 30S ribosomal protein S21%2C len: 70 aa%3B similar to many e.g. RS21_ECOLI 30S ribosomal protein S21 (70 aa)%2C fasta scores%3B opt: 169 z-score: 341.8 E(): 8.8e-12%2C 45.7%25 identity in 70 aa overlap. 80.0%25 identity to HP0562. Contains Pfam match to entry PF01165 S21%2C Ribosomal protein S21%2C score 91.50%2CE-value 1.6e-23%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:16272117;gbkey=CDS;gene=rpsU;inference=protein motif:Pfam:PF01165;locus_tag=Cj0370;product=30S ribosomal protein S21;protein_id=CAL34520.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	339074	339235	.	+	.	ID=id-Cj0370;Note=HMMPfam hit to PF01165%2C Ribosomal protein S21%2Cscore 1.1e-24;gbkey=misc_feature;gene=rpsU;inference=protein motif:Pfam:PF01165;locus_tag=Cj0370
gi|15791399|ref|NC_002163.1|	EMBL	gene	339403	340008	.	+	.	ID=gene-Cj0371;Name=Cj0371;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0371
gi|15791399|ref|NC_002163.1|	EMBL	CDS	339403	340008	.	+	0	ID=cds-CAL34521.1;Parent=gene-Cj0371;Dbxref=EnsemblGenomes-Gn:Cj0371,EnsemblGenomes-Tr:CAL34521,GOA:Q9PID1,InterPro:IPR020913,NCBI_GP:CAL34521.1;Name=CAL34521.1;Note=Original (2000) note: Cj0371%2C probable lipoprotein%2Clen: 201 aa%3B similar to H. pylori gene fragment reported to be involved in flagellar motility TR:Q48273 (EMBL:Z68311) (122 aa)%2C fasta scores%3B opt: 322 z-score: 449.5 E(): 8.8e-18%2C 46.1%25 identity in 115 aa overlap. 46.4%25 identity to HP0232. Contains N-terminal signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: One probable transmembrace helices identified by TMHMM2.0 within CDS. Some similarity to Helicobacter pylori gene fragment. Putative kept within product function. Functional classification - Surface structures%3B~PMID:8733234;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0371;product=putative flagellar motility protein;protein_id=CAL34521.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	339421	339489	.	+	.	ID=id-Cj0371;Note=1 probable transmembrane helix predicted for Cj0371 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0371
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	339451	339483	.	+	.	ID=id-Cj0371-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0371
gi|15791399|ref|NC_002163.1|	EMBL	gene	340018	341187	.	+	.	ID=gene-Cj0372;Name=Cj0372;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0372
gi|15791399|ref|NC_002163.1|	EMBL	CDS	340018	341187	.	+	0	ID=cds-CAL34522.1;Parent=gene-Cj0372;Dbxref=EnsemblGenomes-Gn:Cj0372,EnsemblGenomes-Tr:CAL34522,GOA:Q0PBD8,InterPro:IPR005494,InterPro:IPR016185,UniProtKB/TrEMBL:Q0PBD8,NCBI_GP:CAL34522.1;Name=CAL34522.1;Note=Original (2000) note: Cj0372%2C unknown%2C len: 389 aa%3B similar to hypothetical proteins e.g. YGIC_ECOLI (386 aa)%2Cfasta scores%3B opt: 552 z-score: 508.4 E(): 4.6e-21%2C 31.3%25 identity in 383 aa overlap. Also similar to N-terminus of GSP_ECOLI glutathionylspermidine synthase (619 aa)%2C fasta scores%3B opt: 314 z-score: 248.3 E(): 1.4e-06%2C 24.4%25 identity in 381 aa overlap. 60.5%25 identity to HP0233%3B~Updated (2006) note: Pfam domain PF03738 Glutathionylspermidine synthase identified within CDS. Characterised within Escherichia coli with marginal identity score. Amidase component is most likely not present due to absence at N-terminal end when aligned to Escherichia coli. Product modified to more specific family member based on motif match and characterisation. Putative kept within product function. Functional classification -Misc%3B~PMID:7775463%2C PMID:9398217;gbkey=CDS;inference=protein motif:Pfam:PF03738;locus_tag=Cj0372;product=putative glutathionylspermidine synthase;protein_id=CAL34522.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	340018	341181	.	+	.	ID=id-Cj0372;Note=HMMPfam hit to PF03738%2C Glutathionylspermidine synthase%2C score 3.6e-252;gbkey=misc_feature;inference=protein motif:Pfam:PF03738;locus_tag=Cj0372
gi|15791399|ref|NC_002163.1|	EMBL	gene	341190	342125	.	+	.	ID=gene-Cj0373;Name=Cj0373;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0373
gi|15791399|ref|NC_002163.1|	EMBL	CDS	341190	342125	.	+	0	ID=cds-CAL34523.1;Parent=gene-Cj0373;Dbxref=EnsemblGenomes-Gn:Cj0373,EnsemblGenomes-Tr:CAL34523,GOA:Q0PBD7,InterPro:IPR006139,InterPro:IPR006140,InterPro:IPR016040,InterPro:IPR029753,UniProtKB/TrEMBL:Q0PBD7,NCBI_GP:CAL34523.1;Name=CAL34523.1;Note=Original (2000) note: Cj0373%2C probable D-2-hydroxyacid dehydrogenase%2C len: 311 aa%3B simlar to e.g. DHGY_METEX glycerate dehydrogenase (313 aa)%2C fasta scores%3B opt: 589 z-score: 818.8 E(): 0%2C 35.3%25 identity in 312 aa overlap%2C and to N-terminus of e.g. SERA_BACSU D-3-phosphoglycerate dehydrogenase (525 aa)%2C opt: 420 z-score: 561.2 E(): 5.3e-24%2C 31.4%25 identity in 255 aa overlap. 45.7%25 identity to HP0096. Also similar to C. jejuni serA%2C Cj0891c (29.8%25 identity in 309 aa overlap). Contains PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3%2C and Pfam match to entry PF00389 2-Hacid_DH%2C D-isomer specific 2-hydroxyacid dehydrogenases%2C score 186.20%2C E-value 6.2e-76%3B~Updated (2006) note: Characterisation work in many different species. Putative kept within product function. Functional classification - Misc%3B~PMID:11532010%2C PMID:7934829%2C PMID:8144463;gbkey=CDS;inference=protein motif:Prosite:PS00671;locus_tag=Cj0373;product=putative D-2-hydroxyacid dehydrogenase;protein_id=CAL34523.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	341196	341471	.	+	.	ID=id-Cj0373;Note=HMMPfam hit to PF00389%2C D-isomer specific 2-hydroxyacid dehydrog%2C score 3.7e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF00389;locus_tag=Cj0373
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	341487	342038	.	+	.	ID=id-Cj0373-2;Note=HMMPfam hit to PF02826%2C D-isomer specific 2-hydroxyacid dehydrog%2C score 1.4e-41;gbkey=misc_feature;inference=protein motif:Pfam:PF02826;locus_tag=Cj0373
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	341853	341903	.	+	.	ID=id-Cj0373-3;Note=PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3;gbkey=misc_feature;inference=protein motif:Prosite:PS00671;locus_tag=Cj0373
gi|15791399|ref|NC_002163.1|	EMBL	gene	342115	342606	.	+	.	ID=gene-Cj0374;Name=Cj0374;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0374
gi|15791399|ref|NC_002163.1|	EMBL	CDS	342115	342606	.	+	0	ID=cds-CAL34524.1;Parent=gene-Cj0374;Dbxref=EnsemblGenomes-Gn:Cj0374,EnsemblGenomes-Tr:CAL34524,InterPro:IPR007551,NCBI_GP:CAL34524.1;Name=CAL34524.1;Note=Original (2000) note: Cj0374%2C unknown%2C len: 163 aa%3B simlar to hypothetical proteins e.g. YAJQ_ECOLI (169 aa)%2Cfasta scores%3B opt: 371 z-score: 656.3 E(): 2.7e-29%2C 40.6%25 identity in 160 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF04461 Protein of unknown function (DUF520) identified within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF04461;locus_tag=Cj0374;product=conserved hypothetical protein Cj0374;protein_id=CAL34524.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	342124	342603	.	+	.	ID=id-Cj0374;Note=HMMPfam hit to PF04461%2C Protein of unknown function (DUF520)%2C score 3.7e-100;gbkey=misc_feature;inference=protein motif:Pfam:PF04461;locus_tag=Cj0374
gi|15791399|ref|NC_002163.1|	EMBL	gene	342615	343091	.	+	.	ID=gene-Cj0375;Name=Cj0375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0375
gi|15791399|ref|NC_002163.1|	EMBL	CDS	342615	343091	.	+	0	ID=cds-CAL34525.1;Parent=gene-Cj0375;Dbxref=EnsemblGenomes-Gn:Cj0375,EnsemblGenomes-Tr:CAL34525,UniProtKB/TrEMBL:Q0PBD5,NCBI_GP:CAL34525.1;Name=CAL34525.1;Note=Original (2000) note: Cj0375%2C probable lipoprotein%2Clen: 158 aa%3B no Hp match. Contains N-terminal signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0375;product=putative lipoprotein;protein_id=CAL34525.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	342630	342662	.	+	.	ID=id-Cj0375;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0375
gi|15791399|ref|NC_002163.1|	EMBL	gene	343102	343926	.	+	.	ID=gene-Cj0376;Name=Cj0376;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0376
gi|15791399|ref|NC_002163.1|	EMBL	CDS	343102	343926	.	+	0	ID=cds-CAL34526.1;Parent=gene-Cj0376;Dbxref=EnsemblGenomes-Gn:Cj0376,EnsemblGenomes-Tr:CAL34526,UniProtKB/TrEMBL:Q0PBD4,NCBI_GP:CAL34526.1;Name=CAL34526.1;Note=Original (2000) note: Cj0376%2C possible periplasmic protein%2C len: 274 aa%3B no Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Literature search identified paper linking protein to glycoprotein. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:12186869;gbkey=CDS;locus_tag=Cj0376;product=putative periplasmic protein;protein_id=CAL34526.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	343926	345638	.	+	.	ID=gene-Cj0377;Name=Cj0377;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0377
gi|15791399|ref|NC_002163.1|	EMBL	CDS	343926	345638	.	+	0	ID=cds-CAL34527.1;Parent=gene-Cj0377;Dbxref=EnsemblGenomes-Gn:Cj0377,EnsemblGenomes-Tr:CAL34527,GOA:Q0PBD3,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PBD3,NCBI_GP:CAL34527.1;Name=CAL34527.1;Note=Original (2000) note: Cj0377%2C probable ATPase%2C len: 570 aa%3B weak similarity to many members of the AAA family e.g. TR:O28182 (EMBL:O28182) cell division control protein 48 (Archaeoglobus fulgidus AF2098) (811 aa)%2C fasta scores%3B opt: 341 z-score: 312.6 E(): 3.7e-10%2C 26.4%25 identity in 435 aa overlap. No Hp match. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%2C score 106.20%2C E-value 6.3e-28%3B~Updated (2006) note: Probable changed to putative. No specific characterisation with acceptable identity scores carried out yet. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0377;product=putative AAA family ATPase;protein_id=CAL34527.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	344985	345542	.	+	.	ID=id-Cj0377;Note=HMMPfam hit to PF00004%2C ATPase family associated with various cellul%2C score 1.4e-36;gbkey=misc_feature;inference=protein motif:Pfam:PF00004;locus_tag=Cj0377
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	345000	345023	.	+	.	ID=id-Cj0377-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0377
gi|15791399|ref|NC_002163.1|	EMBL	gene	345635	346174	.	-	.	ID=gene-Cj0378c;Name=Cj0378c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0378c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	345635	346174	.	-	0	ID=cds-CAL34528.1;Parent=gene-Cj0378c;Dbxref=EnsemblGenomes-Gn:Cj0378c,EnsemblGenomes-Tr:CAL34528,GOA:Q0PBD2,InterPro:IPR013130,UniProtKB/TrEMBL:Q0PBD2,NCBI_GP:CAL34528.1;Name=CAL34528.1;Note=Original (2000) note: Cj0378c%2C probable integral membrane protein%2C len: 179 aa%3B no Hp match%3B~Updated (2006) note: Pfam domain PF01794 ferric reductase like transmembrane component identified within CDS. This was from a separate Pfam search. Pfam domain PF05252 Uncharacterised protein family (UPF0191) identified within CDS. Six probable transmembrace helices identified by TMHMM2.0 within CDS. Product functionality changed due to motif match. Literature search identified paper giving further support to product function. No specific characterisation has been carried out yet. Putative kept within product function%3B~PMID:15632442;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0378c;product=putative ferric reductase-like transmembrane protein. Functional classification-Membranes%2Clipoproteins and porins;protein_id=CAL34528.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	345662	345718	.	-	.	ID=id-Cj0378c;Note=6 probable transmembrane helices predicted for Cj0378c by TMHMM2.0 at aa 7-26%2C 36-55%2C 67-86%2C 101-123%2C135-149 and 153-171;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0378c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	345728	345772	.	-	.	ID=id-Cj0378c;Note=6 probable transmembrane helices predicted for Cj0378c by TMHMM2.0 at aa 7-26%2C 36-55%2C 67-86%2C 101-123%2C135-149 and 153-171;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0378c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	345806	345874	.	-	.	ID=id-Cj0378c;Note=6 probable transmembrane helices predicted for Cj0378c by TMHMM2.0 at aa 7-26%2C 36-55%2C 67-86%2C 101-123%2C135-149 and 153-171;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0378c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	345917	345976	.	-	.	ID=id-Cj0378c;Note=6 probable transmembrane helices predicted for Cj0378c by TMHMM2.0 at aa 7-26%2C 36-55%2C 67-86%2C 101-123%2C135-149 and 153-171;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0378c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	346010	346069	.	-	.	ID=id-Cj0378c;Note=6 probable transmembrane helices predicted for Cj0378c by TMHMM2.0 at aa 7-26%2C 36-55%2C 67-86%2C 101-123%2C135-149 and 153-171;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0378c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	346097	346156	.	-	.	ID=id-Cj0378c;Note=6 probable transmembrane helices predicted for Cj0378c by TMHMM2.0 at aa 7-26%2C 36-55%2C 67-86%2C 101-123%2C135-149 and 153-171;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0378c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	345638	346171	.	-	.	ID=id-Cj0378c-2;Note=HMMPfam hit to PF05252%2C Uncharacterised protein family (UPF0191)%2C score 1.2e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF05252;locus_tag=Cj0378c
gi|15791399|ref|NC_002163.1|	EMBL	gene	346174	347067	.	-	.	ID=gene-Cj0379c;Name=Cj0379c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0379c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	346174	347067	.	-	0	ID=cds-CAL34529.1;Parent=gene-Cj0379c;Dbxref=EnsemblGenomes-Gn:Cj0379c,EnsemblGenomes-Tr:CAL34529,GOA:Q9PIC3,InterPro:IPR000572,InterPro:IPR022867,NCBI_GP:CAL34529.1;Name=CAL34529.1;Note=Original (2000) note: Cj0379c%2C unknown%2C len: 297 aa%3B similar to hypothetical proteins e.g. E. coli TR:P76342 (EMBL:AE000288) (334 aa)%2C fasta scores%3B opt: 1038 z-score: 1616.6 E(): 0%2C 56.3%25 identity in 272 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00174 Oxidoreductase molybdopterin binding protein was identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Putative kept within product function. Literature search identified paper giving further clues to product function. Functional classification - Misc%3B~PMID:15632442;gbkey=CDS;inference=protein motif:Pfam:PF00174;locus_tag=Cj0379c;product=putative molybdenum containing oxidoreductase;protein_id=CAL34529.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	346360	346917	.	-	.	ID=id-Cj0379c;Note=HMMPfam hit to PF00174%2C Oxidoreductase molybdopterin binding d%2C score 3.2e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF00174;locus_tag=Cj0379c
gi|15791399|ref|NC_002163.1|	EMBL	gene	347123	347908	.	-	.	ID=gene-Cj0380c;Name=Cj0380c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0380c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	347123	347908	.	-	0	ID=cds-CAL34530.1;Parent=gene-Cj0380c;Dbxref=EnsemblGenomes-Gn:Cj0380c,EnsemblGenomes-Tr:CAL34530,UniProtKB/TrEMBL:Q0PBD0,NCBI_GP:CAL34530.1;Name=CAL34530.1;Note=Original (2000) note: Cj0380c%2C unknonw%2C len: 261 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0380c;product=hypothetical protein Cj0380c;protein_id=CAL34530.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	347905	348744	.	-	.	ID=gene-Cj0381c;Name=pyrF;gbkey=Gene;gene=pyrF;gene_biotype=protein_coding;locus_tag=Cj0381c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	347905	348744	.	-	0	ID=cds-CAL34531.1;Parent=gene-Cj0381c;Dbxref=EnsemblGenomes-Gn:Cj0381c,EnsemblGenomes-Tr:CAL34531,GOA:Q9PIC1,InterPro:IPR001754,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR014732,InterPro:IPR018089,PDB:3RU6,NCBI_GP:CAL34531.1;Name=CAL34531.1;Note=Original (2000) note: Cj0381c%2C pyrF%2C probable orotidine 5'-phosphate decarboxylase%2C len: similar to many e.g. DCOP_BACSU orotidine 5'-phosphate decarboxylase (EC 4.1.1.23) (239 aa)%2C fasta scores%3B opt: 510 z-score: 723.4 E(): 5.2e-33%2C 39.6%25 identity in 217 aa overlap. 53.6%25 identity to HP0005. Contains PS00156 Orotidine 5'-phosphate decarboxylase active site and Pfam match to entry PF00215 OMPdecase%2C Orotidine 5'-phosphate decarboxylases%2C score 91.10%2C E-value 1.8e-25%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Pyrimidine ribonucleotide biosynthesis%3B~PMID:10681442%2C PMID:1709162;gbkey=CDS;gene=pyrF;inference=protein motif:Prosite:PS00156;locus_tag=Cj0381c;product=orotidine 5'-phosphate decarboxylase;protein_id=CAL34531.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	348079	348744	.	-	.	ID=id-Cj0381c;Note=HMMPfam hit to PF00215%2C Orotidine 5'-phosphate decarboxylase / HUMP%2C score 7.3e-82;gbkey=misc_feature;gene=pyrF;inference=protein motif:Pfam:PF00215;locus_tag=Cj0381c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	348541	348582	.	-	.	ID=id-Cj0381c-2;Note=PS00156 Orotidine 5'-phosphate decarboxylase active site;gbkey=misc_feature;gene=pyrF;inference=protein motif:Prosite:PS00156;locus_tag=Cj0381c
gi|15791399|ref|NC_002163.1|	EMBL	gene	348741	349139	.	-	.	ID=gene-Cj0382c;Name=nusB;gbkey=Gene;gene=nusB;gene_biotype=protein_coding;locus_tag=Cj0382c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	348741	349139	.	-	0	ID=cds-CAL34532.1;Parent=gene-Cj0382c;Dbxref=EnsemblGenomes-Gn:Cj0382c,EnsemblGenomes-Tr:CAL34532,GOA:Q9PIC0,InterPro:IPR006027,InterPro:IPR011605,NCBI_GP:CAL34532.1;Name=CAL34532.1;Note=Original (2000) note: Cj0382c%2C nusB%2C probable transcription termination protein%2C len: 132 aa%3B similar to many e.g. NUSB_ECOLI N utilization substance protein B (139 aa)%2C fasta scores%3B opt: 244 z-score: 305.0 E(): 1e-09%2C 35.9%25 identity in 128 aa overlap. 50.0%25 identity to HP0001. Contains Pfam match to entry PF01029 NusB%2C NusB family%2C score 119.00%2C E-value 8.8e-32%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Protein NusB stands for N utilization substance protein B. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:3019094%2C PMID:10881193;gbkey=CDS;gene=nusB;inference=protein motif:Pfam:PF01029;locus_tag=Cj0382c;product=transcription termination protein;protein_id=CAL34532.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	348747	349127	.	-	.	ID=id-Cj0382c;Note=HMMPfam hit to PF01029%2C NusB family%2C score 1.9e-36;gbkey=misc_feature;gene=nusB;inference=protein motif:Pfam:PF01029;locus_tag=Cj0382c
gi|15791399|ref|NC_002163.1|	EMBL	gene	349139	349603	.	-	.	ID=gene-Cj0383c;Name=ribH;gbkey=Gene;gene=ribH;gene_biotype=protein_coding;locus_tag=Cj0383c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	349139	349603	.	-	0	ID=cds-CAL34533.1;Parent=gene-Cj0383c;Dbxref=EnsemblGenomes-Gn:Cj0383c,EnsemblGenomes-Tr:CAL34533,GOA:Q9PIB9,InterPro:IPR002180,NCBI_GP:CAL34533.1;Name=CAL34533.1;Note=Original (2000) note: Cj0383c%2C ribH (ribE)%2Cprobable 6%2C7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta chain)%2C len: 154 aa%3B similar to many e.g. RISB_BACSU 6%2C7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) (154 aa)%2C fasta scores%3B opt: 523 z-score: 959.8 E(): 0%2C 52.6%25 identity in 152 aa overlap. 67.5%25 identity to HP0002. Contains Pfam match to entry PF00885 DMRL_synthase%2C 6%2C7-dimethyl-8-ribityllumazine synthase%2C score 269.30%2C E-value 5e-77%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Riboflavin%3B~PMID:12581640;gbkey=CDS;gene=ribH;inference=protein motif:Pfam:PF00885;locus_tag=Cj0383c;product=6%2C7-dimethyl-8-ribityllumazine synthase;protein_id=CAL34533.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	349142	349573	.	-	.	ID=id-Cj0383c;Note=HMMPfam hit to PF00885%2C6%2C7-dimethyl-8-ribityllumazine synthase%2C score 1.8e-77;gbkey=misc_feature;gene=ribH;inference=protein motif:Pfam:PF00885;locus_tag=Cj0383c
gi|15791399|ref|NC_002163.1|	EMBL	gene	349600	350415	.	-	.	ID=gene-Cj0384c;Name=kdsA;gbkey=Gene;gene=kdsA;gene_biotype=protein_coding;locus_tag=Cj0384c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	349600	350415	.	-	0	ID=cds-CAL34534.1;Parent=gene-Cj0384c;Dbxref=EnsemblGenomes-Gn:Cj0384c,EnsemblGenomes-Tr:CAL34534,GOA:Q9PIB8,InterPro:IPR006218,InterPro:IPR006269,InterPro:IPR013785,NCBI_GP:CAL34534.1;Name=CAL34534.1;Note=Original (2000) note: Cj0384c%2C kdsA%2C probable 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase)%2C len: 271 aa%3B simlar to many e.g. KDSA_ECOLI 2-dehydro-3-deoxyphosphooctonate aldolase (EC 4.1.2.16) (284 aa)%2C fasta scores%3B opt: 665 z-score: 1107.7 E(): 0%2C46.4%25 identity in 267 aa overlap. 63.2%25 identity to HP0003. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. EC number and product function has now been updated. 2-dehydro-3-deoxyphosphooctonate aldolase%2C has been changed to 3-deoxy-8-phosphooctulonate synthase. Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:12581640;gbkey=CDS;gene=kdsA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0384c;product=3-deoxy-8-phosphooctulonate synthase;protein_id=CAL34534.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	349609	350415	.	-	.	ID=id-Cj0384c;Note=HMMPfam hit to PF00793%2C DAHP synthetase I family%2Cscore 9.7e-105;gbkey=misc_feature;gene=kdsA;inference=protein motif:Pfam:PF00793;locus_tag=Cj0384c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	349783	349806	.	-	.	ID=id-Cj0384c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=kdsA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0384c
gi|15791399|ref|NC_002163.1|	EMBL	gene	350412	351344	.	-	.	ID=gene-Cj0385c;Name=Cj0385c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0385c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	350412	351344	.	-	0	ID=cds-CAL34535.1;Parent=gene-Cj0385c;Dbxref=EnsemblGenomes-Gn:Cj0385c,EnsemblGenomes-Tr:CAL34535,GOA:Q0PBC5,InterPro:IPR000620,UniProtKB/TrEMBL:Q0PBC5,NCBI_GP:CAL34535.1;Name=CAL34535.1;Note=Original (2000) note: Cj0385c%2C probable integral membrane protein%2C len: 310 aa%3B similar to many hypothetical integral membrane proteins e.g. TR:O29973 (EMBL:AE001087) Archaeoglobus fulgidus AF0266 (276 aa)%2Cfasta scores%3B opt: 155 z-score: 221.8 E(): 4.5e-05%2C 26.9%25 identity in 279 aa overlap. 30.8%25 identity to HP1234. Contains Pfam match to entry PF00892 DUF6%2C Integral membrane protein%2C score 29.90%2C E-value 5.9e-05%3B~Updated (2006) note: Pfam domain PF00892 Integral membrane protein DUF6 identified within CDS. Ten probable transmembrace helices identified by TMHMM2.0 within CDS. Further support given to product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0385c;product=putative integral membrane protein;protein_id=CAL34535.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	350433	350492	.	-	.	ID=id-Cj0385c;Note=10 probable transmembrane helices predicted for Cj0385c by TMHMM2.0 at aa 9-28%2C 38-56%2C 65-87%2C 97-116%2C121-143%2C 156-173%2C 185-207%2C 217-239%2C 259-281 and 285-304;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0385c;part=1/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	350502	350570	.	-	.	ID=id-Cj0385c;Note=10 probable transmembrane helices predicted for Cj0385c by TMHMM2.0 at aa 9-28%2C 38-56%2C 65-87%2C 97-116%2C121-143%2C 156-173%2C 185-207%2C 217-239%2C 259-281 and 285-304;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0385c;part=2/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	350628	350696	.	-	.	ID=id-Cj0385c;Note=10 probable transmembrane helices predicted for Cj0385c by TMHMM2.0 at aa 9-28%2C 38-56%2C 65-87%2C 97-116%2C121-143%2C 156-173%2C 185-207%2C 217-239%2C 259-281 and 285-304;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0385c;part=3/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	350724	350792	.	-	.	ID=id-Cj0385c;Note=10 probable transmembrane helices predicted for Cj0385c by TMHMM2.0 at aa 9-28%2C 38-56%2C 65-87%2C 97-116%2C121-143%2C 156-173%2C 185-207%2C 217-239%2C 259-281 and 285-304;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0385c;part=4/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	350826	350879	.	-	.	ID=id-Cj0385c;Note=10 probable transmembrane helices predicted for Cj0385c by TMHMM2.0 at aa 9-28%2C 38-56%2C 65-87%2C 97-116%2C121-143%2C 156-173%2C 185-207%2C 217-239%2C 259-281 and 285-304;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0385c;part=5/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	350916	350984	.	-	.	ID=id-Cj0385c;Note=10 probable transmembrane helices predicted for Cj0385c by TMHMM2.0 at aa 9-28%2C 38-56%2C 65-87%2C 97-116%2C121-143%2C 156-173%2C 185-207%2C 217-239%2C 259-281 and 285-304;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0385c;part=6/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	350997	351056	.	-	.	ID=id-Cj0385c;Note=10 probable transmembrane helices predicted for Cj0385c by TMHMM2.0 at aa 9-28%2C 38-56%2C 65-87%2C 97-116%2C121-143%2C 156-173%2C 185-207%2C 217-239%2C 259-281 and 285-304;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0385c;part=7/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	351084	351152	.	-	.	ID=id-Cj0385c;Note=10 probable transmembrane helices predicted for Cj0385c by TMHMM2.0 at aa 9-28%2C 38-56%2C 65-87%2C 97-116%2C121-143%2C 156-173%2C 185-207%2C 217-239%2C 259-281 and 285-304;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0385c;part=8/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	351177	351233	.	-	.	ID=id-Cj0385c;Note=10 probable transmembrane helices predicted for Cj0385c by TMHMM2.0 at aa 9-28%2C 38-56%2C 65-87%2C 97-116%2C121-143%2C 156-173%2C 185-207%2C 217-239%2C 259-281 and 285-304;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0385c;part=9/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	351261	351320	.	-	.	ID=id-Cj0385c;Note=10 probable transmembrane helices predicted for Cj0385c by TMHMM2.0 at aa 9-28%2C 38-56%2C 65-87%2C 97-116%2C121-143%2C 156-173%2C 185-207%2C 217-239%2C 259-281 and 285-304;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0385c;part=10/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	350925	351290	.	-	.	ID=id-Cj0385c-2;Note=HMMPfam hit to PF00892%2C Integral membrane protein DUF6%2C score 6.9e-16;gbkey=misc_feature;inference=protein motif:Pfam:PF00892;locus_tag=Cj0385c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	351291	351323	.	-	.	ID=id-Cj0385c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0385c
gi|15791399|ref|NC_002163.1|	EMBL	gene	351446	352828	.	+	.	ID=gene-Cj0386;Name=Cj0386;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0386
gi|15791399|ref|NC_002163.1|	EMBL	CDS	351446	352828	.	+	0	ID=cds-CAL34536.1;Parent=gene-Cj0386;Dbxref=EnsemblGenomes-Gn:Cj0386,EnsemblGenomes-Tr:CAL34536,GOA:Q9PIB6,InterPro:IPR005225,InterPro:IPR006073,InterPro:IPR015946,InterPro:IPR016484,InterPro:IPR027417,NCBI_GP:CAL34536.1;Name=CAL34536.1;Note=Original (2000) note: Cj0386%2C probable GTP-binding protein%3B len: 460 aa%3B almost identical to%2C but longer than TR:P94645 (EMBL:U63330) C.jejuni putative GTPase (383 aa) (99.2%25 identity in 376 aa overlap)%2C and similar to many members of the ERA/THDF family of GTP-binding proteins e.g. YPHC_BACSU (436 aa)%2C fasta scores%3B opt: 717 z-score: 1271.3 E(): 0%2C 37.0%25 identity in 457 aa overlap. 51.6%25 identity to HP0834. Contains 2x PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domains x2 PF01926 GTPase of unknown function protein was identified within CDS. This family member is part of the G protein superfamily clan. Further support given towards product function. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0386;product=putative GTP-binding protein;protein_id=CAL34536.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	351449	351802	.	+	.	ID=id-Cj0386;Note=HMMPfam hit to PF01926%2C GTPase of unknown function%2Cscore 2.7e-36;gbkey=misc_feature;inference=protein motif:Pfam:PF01926;locus_tag=Cj0386
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	351467	351490	.	+	.	ID=id-Cj0386-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0386
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	352031	352393	.	+	.	ID=id-Cj0386-3;Note=HMMPfam hit to PF01926%2C GTPase of unknown function%2Cscore 1.3e-39;gbkey=misc_feature;inference=protein motif:Pfam:PF01926;locus_tag=Cj0386
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	352049	352072	.	+	.	ID=id-Cj0386-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0386
gi|15791399|ref|NC_002163.1|	EMBL	gene	352815	353312	.	+	.	ID=gene-Cj0387;Name=aroK;gbkey=Gene;gene=aroK;gene_biotype=protein_coding;locus_tag=Cj0387
gi|15791399|ref|NC_002163.1|	EMBL	CDS	352815	353312	.	+	0	ID=cds-CAL34537.1;Parent=gene-Cj0387;Dbxref=EnsemblGenomes-Gn:Cj0387,EnsemblGenomes-Tr:CAL34537,GOA:Q0PBC3,InterPro:IPR000623,InterPro:IPR027417,PDB:1VIA,UniProtKB/TrEMBL:Q0PBC3,NCBI_GP:CAL34537.1;Name=CAL34537.1;Note=Original (2000) note: Cj0387%2C aroK%2C probable shikimate kinase%2C len: 165 aa%3B similar to many e.g. AROK_ECOLI shikimate kinase I (EC 2.7.1.71) (172 aa)%2Cfasta scores%3B opt: 268 z-score: 331.1 E(): 3.7e-11%2C 30.8%25 identity in 169 aa overlap. 40.6%25 identity to HP0157. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF01202 SKI%2C Shikimate kinase%2C score 106.90%2C E-value 3.8e-28%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Aromatic amino acid family%3B~PMID:7612934%2C PMID:1309529;gbkey=CDS;gene=aroK;inference=protein motif:Prosite:PS00017;locus_tag=Cj0387;product=shikimate kinase;protein_id=CAL34537.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	352845	352868	.	+	.	ID=id-Cj0387;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=aroK;inference=protein motif:Prosite:PS00017;locus_tag=Cj0387
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	352851	353309	.	+	.	ID=id-Cj0387-2;Note=HMMPfam hit to PF01202%2C Shikimate kinase%2C score 3.6e-48;gbkey=misc_feature;gene=aroK;inference=protein motif:Pfam:PF01202;locus_tag=Cj0387
gi|15791399|ref|NC_002163.1|	EMBL	gene	353309	354268	.	+	.	ID=gene-Cj0388;Name=trpS;gbkey=Gene;gene=trpS;gene_biotype=protein_coding;locus_tag=Cj0388
gi|15791399|ref|NC_002163.1|	EMBL	CDS	353309	354268	.	+	0	ID=cds-CAL34538.1;Parent=gene-Cj0388;Dbxref=EnsemblGenomes-Gn:Cj0388,EnsemblGenomes-Tr:CAL34538,GOA:Q9PIB4,InterPro:IPR001412,InterPro:IPR002305,InterPro:IPR002306,InterPro:IPR014729,InterPro:IPR024109,PDB:3M5W,PDB:3TZL,NCBI_GP:CAL34538.1;Name=CAL34538.1;Note=Original (2000) note: Cj0388%2C trpS%2Ctryptophanyl-tRNA synthetase%2C len: 319 aa%3B similar to many e.g. SYW_ECOLI tryptophanyl-tRNA synthetase (EC 6.1.1.2) (334 aa)%2C fasta scores%3B opt: 692 z-score: 1143.5 E(): 0%2C38.6%25 identity in 329 aa overlap. 37.3%25 identity to HP1253. Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature and Pfam match to entry PF00579 tRNA-synt_1b%2C tRNA synthetases class I (Trp and Tyr)%2C score 113.70%2C E-value 3.6e-30%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:6171561;gbkey=CDS;gene=trpS;inference=protein motif:Prosite:PS00178;locus_tag=Cj0388;product=tryptophanyl-tRNA synthetase;protein_id=CAL34538.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	353309	354133	.	+	.	ID=id-Cj0388;Note=HMMPfam hit to PF00579%2C tRNA synthetases class I (W and Y)%2C score 1.1e-66;gbkey=misc_feature;gene=trpS;inference=protein motif:Pfam:PF00579;locus_tag=Cj0388
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	353333	353362	.	+	.	ID=id-Cj0388-2;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=trpS;inference=protein motif:Prosite:PS00178;locus_tag=Cj0388
gi|15791399|ref|NC_002163.1|	EMBL	gene	354279	355514	.	+	.	ID=gene-Cj0389;Name=serS;gbkey=Gene;gene=serS;gene_biotype=protein_coding;locus_tag=Cj0389
gi|15791399|ref|NC_002163.1|	EMBL	CDS	354279	355514	.	+	0	ID=cds-CAL34539.1;Parent=gene-Cj0389;Dbxref=EnsemblGenomes-Gn:Cj0389,EnsemblGenomes-Tr:CAL34539,GOA:Q9PIB3,InterPro:IPR002314,InterPro:IPR002317,InterPro:IPR006195,InterPro:IPR010978,InterPro:IPR015866,NCBI_GP:CAL34539.1;Name=CAL34539.1;Note=Original (2000) note: Cj0389%2C serS%2C seryl-tRNA synthetase%2C len: 411 aa%3B highly similar to many e.g. SYS_ECOLI seryl-tRNA synthetase (EC 6.1.1.11) (430 aa)%2Cfasta scores%3B opt: 1155 z-score: 1762.6 E(): 0%2C 47.0%25 identity in 423 aa overlap. 56.1%25 identity to HP1480. Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1 and Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetases class II (Gly%2C His%2C Pro and Ser)%2C score 244.20%2C E-value 1.8e-69%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:3029694;gbkey=CDS;gene=serS;inference=protein motif:Prosite:PS00179;locus_tag=Cj0389;product=seryl-tRNA synthetase;protein_id=CAL34539.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	354279	354590	.	+	.	ID=id-Cj0389;Note=HMMPfam hit to PF02403%2C Seryl-tRNA synthetase N-terminal domain%2C score 9.1e-26;gbkey=misc_feature;gene=serS;inference=protein motif:Pfam:PF02403;locus_tag=Cj0389
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	354750	355214	.	+	.	ID=id-Cj0389-2;Note=HMMPfam hit to PF00587%2C tRNA synthetase class II core domain (G%2C%2C score 1.4e-52;gbkey=misc_feature;gene=serS;inference=protein motif:Pfam:PF00587;locus_tag=Cj0389
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	355044	355118	.	+	.	ID=id-Cj0389-3;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=serS;inference=protein motif:Prosite:PS00179;locus_tag=Cj0389
gi|15791399|ref|NC_002163.1|	EMBL	gene	355524	357986	.	+	.	ID=gene-Cj0390;Name=Cj0390;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0390
gi|15791399|ref|NC_002163.1|	EMBL	CDS	355524	357986	.	+	0	ID=cds-CAL34540.1;Parent=gene-Cj0390;Dbxref=EnsemblGenomes-Gn:Cj0390,EnsemblGenomes-Tr:CAL34540,GOA:Q0PBC0,InterPro:IPR001440,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR019734,UniProtKB/TrEMBL:Q0PBC0,NCBI_GP:CAL34540.1;Name=CAL34540.1;Note=Original (2000) note: Cj0390%2C possible transmembrane protein%2C len: 820 aa%3B 28.7%25 identity in 703 aa overlap to HP1479. Contains possible transmembrane domain around aa 100 and Pfam match to entry PF00515 TPR%2CTPR Domain%2C score 26.90%2C E-value 0.00047%3B~Updated (2006) note: Pfam domains x4 PF07719 Tetratricopeptide repeat were identified within CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Pfam:PF07719;locus_tag=Cj0390;product=putative transmembrane protein;protein_id=CAL34540.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	355791	355859	.	+	.	ID=id-Cj0390;Note=1 probable transmembrane helix predicted for Cj0390 by TMHMM2.0 at aa 90-112;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0390
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	355956	356057	.	+	.	ID=id-Cj0390-2;Note=HMMPfam hit to PF00515%2C Tetratricopeptide repeat%2Cscore 0.12%3B~HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 0.032;gbkey=misc_feature;inference=protein motif:Pfam:PF07719;locus_tag=Cj0390
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	356064	356153	.	+	.	ID=id-Cj0390-3;Note=HMMPfam hit to PF00515%2C Tetratricopeptide repeat%2Cscore 0.43;gbkey=misc_feature;inference=protein motif:Pfam:PF00515;locus_tag=Cj0390
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	356451	356552	.	+	.	ID=id-Cj0390-4;Note=HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 0.15%3B~HMMPfam hit to PF00515%2C Tetratricopeptide repeat%2Cscore 0.034;gbkey=misc_feature;inference=protein motif:Pfam:PF07719;locus_tag=Cj0390
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	357018	357119	.	+	.	ID=id-Cj0390-5;Note=HMMPfam hit to PF00515%2C Tetratricopeptide repeat%2Cscore 5.3e-06%3B~HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 0.00052;gbkey=misc_feature;inference=protein motif:Pfam:PF07719;locus_tag=Cj0390
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	357981	358018	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:357981..358018;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	358017	358652	.	-	.	ID=gene-Cj0391c;Name=Cj0391c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0391c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	358017	358652	.	-	0	ID=cds-CAL34541.1;Parent=gene-Cj0391c;Dbxref=EnsemblGenomes-Gn:Cj0391c,EnsemblGenomes-Tr:CAL34541,UniProtKB/TrEMBL:Q0PBB9,NCBI_GP:CAL34541.1;Name=CAL34541.1;Note=Original (2000) note: Cj0391c%2C unknown%2C len: 211 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Literature search identified paper giving further clues to product function. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0391c;product=hypothetical protein Cj0391c;protein_id=CAL34541.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	358750	360192	.	-	.	ID=gene-Cj0392c;Name=pyk;gbkey=Gene;gene=pyk;gene_biotype=protein_coding;locus_tag=Cj0392c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	358750	360192	.	-	0	ID=cds-CAL34542.1;Parent=gene-Cj0392c;Dbxref=EnsemblGenomes-Gn:Cj0392c,EnsemblGenomes-Tr:CAL34542,GOA:Q0PBB8,InterPro:IPR001697,InterPro:IPR011037,InterPro:IPR015793,InterPro:IPR015794,InterPro:IPR015795,InterPro:IPR015806,InterPro:IPR015813,UniProtKB/TrEMBL:Q0PBB8,NCBI_GP:CAL34542.1;Name=CAL34542.1;Note=Original (2000) note: Cj0392c%2C pyk%2C probable pyruvate kinase%2C len: 480 aa%3B similar to e.g. KPYK_BACSU pyruvate kinase (EC 2.7.1.40) (585 aa)%2C fasta scores%3B opt: 1111 z-score: 1494.8 E(): 0%2C 41.8%25 identity in 476 aa overlap. No Hp match. Contains PS00659 Glycosyl hydrolases family 5 signature and Pfam match to entry PF00224 PK%2CPyruvate kinase%2C score 523.20%2C E-value 1.8e-153%3B~Updated (2006) note: Pfam domain PF02887 Pyruvate kinase%2C alpha/beta domain protein was identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism -Glycolysis%3B~PMID:10932722;gbkey=CDS;gene=pyk;inference=protein motif:Prosite:PS00659;locus_tag=Cj0392c;product=pyruvate kinase;protein_id=CAL34542.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	358780	359130	.	-	.	ID=id-Cj0392c;Note=HMMPfam hit to PF02887%2C Pyruvate kinase%2C alpha/beta domain%2C score 1.4e-11;gbkey=misc_feature;gene=pyk;inference=protein motif:Pfam:PF02887;locus_tag=Cj0392c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	359152	360189	.	-	.	ID=id-Cj0392c-2;Note=HMMPfam hit to PF00224%2C Pyruvate kinase%2C barrel domain%2C score 2.4e-135;gbkey=misc_feature;gene=pyk;inference=protein motif:Pfam:PF00224;locus_tag=Cj0392c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	359623	359652	.	-	.	ID=id-Cj0392c-3;Note=PS00659 Glycosyl hydrolases family 5 signature;gbkey=misc_feature;gene=pyk;inference=protein motif:Prosite:PS00659;locus_tag=Cj0392c
gi|15791399|ref|NC_002163.1|	EMBL	gene	360241	361587	.	-	.	ID=gene-Cj0393c;Name=mqo;gbkey=Gene;gene=mqo;gene_biotype=protein_coding;locus_tag=Cj0393c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	360241	361587	.	-	0	ID=cds-CAL34543.1;Parent=gene-Cj0393c;Dbxref=EnsemblGenomes-Gn:Cj0393c,EnsemblGenomes-Tr:CAL34543,GOA:P56954,InterPro:IPR006231,NCBI_GP:CAL34543.1;Name=CAL34543.1;Note=Original (2000) note: Cj0393c%2C possible oxidoreductase%2C len: 448 aa%3B some simlarity to MQO_ECOLI probable malate:quinone oxidoreductase (548 aa)%2C fasta scores%3B opt: 121 z-score: 223.1 E(): 3.8e-05%2C 24.6%25 identity in 455 aa overlap. 49.3%25 identity to HP0086. Contains PS00110 Pyruvate kinase active site signature%3B~Updated (2006) note: Pfam domain PF06039 Malate:quinone oxidoreductase (Mqo) protein was identified within CDS. Characterised within Helicobacter pylori with acceptable identity score. Product modified to more specific family member due to motif match and characterisation work. Putative kept within product function. Functional classification - Misc%3B~PMID:10809701;gbkey=CDS;gene=mqo;inference=protein motif:Prosite:PS00110;locus_tag=Cj0393c;product=putative malate:quinone oxidoreductase;protein_id=CAL34543.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	360244	361584	.	-	.	ID=id-Cj0393c;Note=HMMPfam hit to PF06039%2C Malate:quinone oxidoreductase (Mqo)%2C score 1.3e-08;gbkey=misc_feature;gene=mqo;inference=protein motif:Pfam:PF06039;locus_tag=Cj0393c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	360331	360363	.	-	.	ID=id-Cj0393c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=mqo;inference=protein motif:Prosite:PS00013;locus_tag=Cj0393c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	360667	360705	.	-	.	ID=id-Cj0393c-3;Note=PS00110 Pyruvate kinase active site signature;gbkey=misc_feature;gene=mqo;inference=protein motif:Prosite:PS00110;locus_tag=Cj0393c
gi|15791399|ref|NC_002163.1|	EMBL	gene	361706	362335	.	-	.	ID=gene-Cj0394c;Name=Cj0394c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0394c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	361706	362335	.	-	0	ID=cds-CAL34544.1;Parent=gene-Cj0394c;Dbxref=EnsemblGenomes-Gn:Cj0394c,EnsemblGenomes-Tr:CAL34544,GOA:Q0PBB6,InterPro:IPR004619,PDB:2NRH,NCBI_GP:CAL34544.1;Name=CAL34544.1;Note=Original (2000) note: Cj0394c%2C unknown%2C len: 209 aa%3B similar to hypothetical proteins e.g. TR:O67753 (EMBL:AE000763) Aquifex aeolicus AQ_1924 (229 aa)%2C fasta scores%3B opt: 183 z-score: 230.1 E(): 1.6e-05. 26.2%25 identity in 225 aa overlap. 39.2%25 identity to HP0862%3B~Updated (2006) note: Pfam domain PF03309 Bordetella pertussis Bvg accessory factor (Baf) protein was identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Broad regulatory functions%3B~PMID:11094274;gbkey=CDS;inference=protein motif:Pfam:PF03309;locus_tag=Cj0394c;product=putative transcriptional activator;protein_id=CAL34544.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	361838	362335	.	-	.	ID=id-Cj0394c;Note=HMMPfam hit to PF03309%2C Bordetella pertussis Bvg accessory fac%2C score 7.3e-09;gbkey=misc_feature;inference=protein motif:Pfam:PF03309;locus_tag=Cj0394c
gi|15791399|ref|NC_002163.1|	EMBL	gene	362322	362612	.	-	.	ID=gene-Cj0395c;Name=Cj0395c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0395c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	362322	362612	.	-	0	ID=cds-CAL34545.1;Parent=gene-Cj0395c;Dbxref=EnsemblGenomes-Gn:Cj0395c,EnsemblGenomes-Tr:CAL34545,UniProtKB/TrEMBL:Q0PBB5,NCBI_GP:CAL34545.1;Name=CAL34545.1;Note=Original (2000) note: Cj0395c%2C unknown%2C len: 96 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0395c;product=hypothetical protein Cj0395c;protein_id=CAL34545.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	362609	363607	.	-	.	ID=gene-Cj0396c;Name=Cj0396c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0396c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	362609	363607	.	-	0	ID=cds-CAL34546.1;Parent=gene-Cj0396c;Dbxref=EnsemblGenomes-Gn:Cj0396c,EnsemblGenomes-Tr:CAL34546,InterPro:IPR017986,UniProtKB/TrEMBL:Q0PBB4,NCBI_GP:CAL34546.1;Name=CAL34546.1;Note=Original (2000) note: Cj0396c%2C probable lipoprotein%2C len: 332 aa%3B 28.9%25 identity to HP0863. Conatins N-terminal signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0396c;product=putative lipoprotein;protein_id=CAL34546.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	363557	363589	.	-	.	ID=id-Cj0396c;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0396c
gi|15791399|ref|NC_002163.1|	EMBL	gene	363604	364182	.	-	.	ID=gene-Cj0397c;Name=Cj0397c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0397c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	363604	364182	.	-	0	ID=cds-CAL34547.1;Parent=gene-Cj0397c;Dbxref=EnsemblGenomes-Gn:Cj0397c,EnsemblGenomes-Tr:CAL34547,UniProtKB/TrEMBL:Q0PBB3,NCBI_GP:CAL34547.1;Name=CAL34547.1;Note=Original (2000) note: Cj0397c%2C unknown%2C len: 192 aa%3B almost identical to C. jejuni hypothetical protein fragment TR:Q46096 (EMBL:U27272)%2C 28.5%25 identity to HP0864%3B~Updated (2006) note: One probable transmembrace helices identified by TMHMM2.0 within CDS. Literature serach identified paper giving further clues about product function. Functional classification - Conserved hypothetical proteins%3B~PMID:10913692;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0397c;product=hypothetical protein Cj0397c;protein_id=CAL34547.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	364018	364077	.	-	.	ID=id-Cj0397c;Note=1 probable transmembrane helix predicted for Cj0397c by TMHMM2.0 at aa 36-55;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0397c
gi|15791399|ref|NC_002163.1|	EMBL	gene	364326	364610	.	+	.	ID=gene-Cj0398;Name=gatC;gbkey=Gene;gene=gatC;gene_biotype=protein_coding;locus_tag=Cj0398
gi|15791399|ref|NC_002163.1|	EMBL	CDS	364326	364610	.	+	0	ID=cds-CAL34548.1;Parent=gene-Cj0398;Dbxref=EnsemblGenomes-Gn:Cj0398,EnsemblGenomes-Tr:CAL34548,GOA:Q9PIA5,InterPro:IPR003837,NCBI_GP:CAL34548.1;Name=CAL34548.1;Note=Original (2000) note: Cj0398%2C gatC%2C probable Glu-tRNAGln amidotransferase subunit C%2C len: 94 aa%3B similar to e.g. TR:O06492 B. subtilis gatC (yedA) (101 aa)%2C fasta scores%3B opt: 139 z-score: 248.0 E(): 1.6e-06%2C28.4%25 identity in 95 aa overlap. 40.6%25 identity to HP0975%3B~Updated (2006) note: Pfam domain PF02686 Glu-tRNAGln amidotransferase C subunit was identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with marginal identity score. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:9342321;gbkey=CDS;gene=gatC;inference=protein motif:Pfam:PF02686;locus_tag=Cj0398;product=Glu-tRNAGln amidotransferase subunit C;protein_id=CAL34548.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	364380	364592	.	+	.	ID=id-Cj0398;Note=HMMPfam hit to PF02686%2C Glu-tRNAGln amidotransferase C subunit%2C score 5.1e-09;gbkey=misc_feature;gene=gatC;inference=protein motif:Pfam:PF02686;locus_tag=Cj0398
gi|15791399|ref|NC_002163.1|	EMBL	gene	364678	365241	.	+	.	ID=gene-Cj0399;Name=Cj0399;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0399
gi|15791399|ref|NC_002163.1|	EMBL	CDS	364678	365241	.	+	0	ID=cds-CAL34549.1;Parent=gene-Cj0399;Dbxref=EnsemblGenomes-Gn:Cj0399,EnsemblGenomes-Tr:CAL34549,GOA:Q0PBB1,InterPro:IPR003825,UniProtKB/TrEMBL:Q0PBB1,NCBI_GP:CAL34549.1;Name=CAL34549.1;Note=Original (2000) note: Cj0399%2C probable integral membrane protein%2C len: 187 aa%3B identical to C. jejuni hypothetical protein fragment TR:O68605 (EMBL:AF052056) (123 aa). 26.9%25 identity in 171 aa overlap to HP0181 (224 aa)%3B~Updated (2006) note: Four probable transmembrace helices identified by TMHMM2.0 within CDS. Pfam domain PF02674 Colicin V production protein identified within CDS. Product modified to more speicific family member based on motif matches. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0399;product=colicin V production protein homolog;protein_id=CAL34549.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	364690	365163	.	+	.	ID=id-Cj0399;Note=HMMPfam hit to PF02674%2C Colicin V production protein%2C score 1.4e-48;gbkey=misc_feature;inference=protein motif:Pfam:PF02674;locus_tag=Cj0399
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	364690	364758	.	+	.	ID=id-Cj0399-2;Note=4 probable transmembrane helices predicted for Cj0399 by TMHMM2.0 at aa 5-27%2C 31-48%2C 68-90 and 105-127;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0399;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	364768	364821	.	+	.	ID=id-Cj0399-2;Note=4 probable transmembrane helices predicted for Cj0399 by TMHMM2.0 at aa 5-27%2C 31-48%2C 68-90 and 105-127;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0399;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	364879	364947	.	+	.	ID=id-Cj0399-2;Note=4 probable transmembrane helices predicted for Cj0399 by TMHMM2.0 at aa 5-27%2C 31-48%2C 68-90 and 105-127;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0399;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	364990	365058	.	+	.	ID=id-Cj0399-2;Note=4 probable transmembrane helices predicted for Cj0399 by TMHMM2.0 at aa 5-27%2C 31-48%2C 68-90 and 105-127;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0399;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	364894	364926	.	+	.	ID=id-Cj0399-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0399
gi|15791399|ref|NC_002163.1|	EMBL	gene	365243	365716	.	+	.	ID=gene-Cj0400;Name=fur;gbkey=Gene;gene=fur;gene_biotype=protein_coding;locus_tag=Cj0400
gi|15791399|ref|NC_002163.1|	EMBL	CDS	365243	365716	.	+	0	ID=cds-CAL34550.1;Parent=gene-Cj0400;Dbxref=EnsemblGenomes-Gn:Cj0400,EnsemblGenomes-Tr:CAL34550,GOA:P0C631,InterPro:IPR002481,InterPro:IPR011991,PDB:4ETS,NCBI_GP:CAL34550.1;Name=CAL34550.1;Note=Original (2000) note: Cj0400%2C fur%2C ferric uptake regulator%2C len: 157 aa%3B identical to FUR_CAMJE ferric uptake regulation protein%2C and highly simliar to many others e.g. FUR_BORPE (139 aa)%2C fasta scores%3B opt: 354 z-score: 552.9 E(): 1.7e-23 41.6%25 identity in 137 aa overlap. 40.8%25 identity to HP1027%3B~Updated (2006) note: Pfam domain PF01475 Ferric uptake regulator family was identified within CDS. Characterised within Campylobacter jejuni. Putative not added to product function. Functional classification -Broad regulatory functions%3B~PMID:8083178%2C PMID:7590316%2C PMID:9765558;gbkey=CDS;gene=fur;inference=protein motif:Pfam:PF01475;locus_tag=Cj0400;product=ferric uptake regulator;protein_id=CAL34550.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	365303	365668	.	+	.	ID=id-Cj0400;Note=HMMPfam hit to PF01475%2C Ferric uptake regulator family%2C score 1.4e-63;gbkey=misc_feature;gene=fur;inference=protein motif:Pfam:PF01475;locus_tag=Cj0400
gi|15791399|ref|NC_002163.1|	EMBL	gene	365717	367222	.	+	.	ID=gene-Cj0401;Name=lysS;gbkey=Gene;gene=lysS;gene_biotype=protein_coding;locus_tag=Cj0401
gi|15791399|ref|NC_002163.1|	EMBL	CDS	365717	367222	.	+	0	ID=cds-CAL34551.1;Parent=gene-Cj0401;Dbxref=EnsemblGenomes-Gn:Cj0401,EnsemblGenomes-Tr:CAL34551,GOA:P41258,InterPro:IPR002313,InterPro:IPR004364,InterPro:IPR004365,InterPro:IPR006195,InterPro:IPR012340,InterPro:IPR018149,InterPro:IPR018150,NCBI_GP:CAL34551.1;Name=CAL34551.1;Note=Original (2000) note: Cj0401%2C lysS%2C lysyl-tRNA synthetase%2C len: 501 aa%3B 99.8%25 identical to SYK_CAMJE lysyl-tRNA synthetase (EC 6.1.1.6) (501 aa)%2C and highly similar to many e.g. SYK2_ECOLI lysyl-tRNA synthetase%2Cheat inducible (504 aa%2C fasta scores%3B )opt: 1526 z-score: 2137.2 E(): 0%2C 47.6%25 identity in 498 aa overlap. 58.8%25 identity to HP0182. Conatains PS00179 and PS00339 Aminoacyl-transfer RNA synthetases class-II signatures 1 and 2%2C and Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II%2C score 690.40%2C E-value 8.5e-204%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:1732205;gbkey=CDS;gene=lysS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0401;product=lysyl-tRNA synthetase;protein_id=CAL34551.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	365888	366124	.	+	.	ID=id-Cj0401;Note=HMMPfam hit to PF01336%2C OB-fold nucleic acid binding domain%2C score 5e-15;gbkey=misc_feature;gene=lysS;inference=protein motif:Pfam:PF01336;locus_tag=Cj0401
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	366170	367192	.	+	.	ID=id-Cj0401-2;Note=HMMPfam hit to PF00152%2C tRNA synthetases class II (D%2C K and N)%2C score 4.6e-205;gbkey=misc_feature;gene=lysS;inference=protein motif:Pfam:PF00152;locus_tag=Cj0401
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	366470	366523	.	+	.	ID=id-Cj0401-3;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=lysS;inference=protein motif:Prosite:PS00179;locus_tag=Cj0401
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	367109	367138	.	+	.	ID=id-Cj0401-4;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=lysS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0401
gi|15791399|ref|NC_002163.1|	EMBL	gene	367219	368463	.	+	.	ID=gene-Cj0402;Name=glyA;gbkey=Gene;gene=glyA;gene_biotype=protein_coding;locus_tag=Cj0402
gi|15791399|ref|NC_002163.1|	EMBL	CDS	367219	368463	.	+	0	ID=cds-CAL34552.1;Parent=gene-Cj0402;Dbxref=EnsemblGenomes-Gn:Cj0402,EnsemblGenomes-Tr:CAL34552,GOA:P24531,InterPro:IPR001085,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR019798,PDB:3N0L,NCBI_GP:CAL34552.1;Name=CAL34552.1;Note=Original (2000) note: Cj0402%2C glyA%2C serine hydroxymethyltransferase%2C len: 414 aa%3B 99.3%25 identical to GLYA_CAMJE serine hydroxymethyltransferase (EC 2.1.2.1) (414 aa)%2C and highly similar to many e.g. GLYA_ECOLI serine hydroxymethyltransferase (417 aa) fasta scores%3B opt: 1571 z-score: 2309.4 E(): 0%2C 55.7%25 identity in 411 aa overlap. 68.4%25 identity to HP0183. Contains PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site and Pfam match to entry PF00464 SHMT%2C Serine hydroxymethyltransferase%2C score 944.50%2C E-value 2.3e-283%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Putative not added to product function. Functional classification - Amino acid biosynthesis - Serine family%3B~PMID:2060796;gbkey=CDS;gene=glyA;inference=protein motif:Prosite:PS00096;locus_tag=Cj0402;product=serine hydroxymethyltransferase;protein_id=CAL34552.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	367225	368355	.	+	.	ID=id-Cj0402;Note=HMMPfam hit to PF00464%2C Serine hydroxymethyltransferase%2C score 1.9e-282;gbkey=misc_feature;gene=glyA;inference=protein motif:Pfam:PF00464;locus_tag=Cj0402
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	367864	367914	.	+	.	ID=id-Cj0402-2;Note=PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=glyA;inference=protein motif:Prosite:PS00096;locus_tag=Cj0402
gi|15791399|ref|NC_002163.1|	EMBL	gene	368460	369005	.	+	.	ID=gene-Cj0403;Name=Cj0403;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0403
gi|15791399|ref|NC_002163.1|	EMBL	CDS	368460	369005	.	+	0	ID=cds-CAL34553.1;Parent=gene-Cj0403;Dbxref=EnsemblGenomes-Gn:Cj0403,EnsemblGenomes-Tr:CAL34553,InterPro:IPR015061,UniProtKB/TrEMBL:Q0PBA7,NCBI_GP:CAL34553.1;Name=CAL34553.1;Note=Original (2000) note: Cj0403%2C unknown%2C len: 181 aa%3B 57.8%25 identity to HP0184%3B~Updated (2006) note: Literature search identified paper giving further clues to product function. Functional classification - Conserved hypothetical proteins%3B~PMID:12595250;gbkey=CDS;locus_tag=Cj0403;product=hypothetical protein Cj0403;protein_id=CAL34553.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	369019	369855	.	+	.	ID=gene-Cj0404;Name=Cj0404;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0404
gi|15791399|ref|NC_002163.1|	EMBL	CDS	369019	369855	.	+	0	ID=cds-CAL34554.1;Parent=gene-Cj0404;Dbxref=EnsemblGenomes-Gn:Cj0404,EnsemblGenomes-Tr:CAL34554,GOA:Q0PBA6,InterPro:IPR007730,UniProtKB/TrEMBL:Q0PBA6,NCBI_GP:CAL34554.1;Name=CAL34554.1;Note=Original (2000) note: Cj0404%2C probable transmembrane protein%2C len: 278 aa%3B no Hp match. Contains probable transmembrane domain around 40 aa%3B~Updated (2006) note: Literature search identified paper giving further clues to product function. Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:12595250;gbkey=CDS;locus_tag=Cj0404;product=putative transmembrane protein;protein_id=CAL34554.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	369091	369144	.	+	.	ID=id-Cj0404;Note=1 probable transmembrane helix predicted for Cj0404 by TMHMM2.0 at aa 25-42;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0404
gi|15791399|ref|NC_002163.1|	EMBL	gene	369852	370640	.	+	.	ID=gene-Cj0405;Name=aroE;gbkey=Gene;gene=aroE;gene_biotype=protein_coding;locus_tag=Cj0405
gi|15791399|ref|NC_002163.1|	EMBL	CDS	369852	370640	.	+	0	ID=cds-CAL34555.1;Parent=gene-Cj0405;Dbxref=EnsemblGenomes-Gn:Cj0405,EnsemblGenomes-Tr:CAL34555,GOA:Q0PBA5,InterPro:IPR006151,InterPro:IPR011342,InterPro:IPR013708,InterPro:IPR016040,InterPro:IPR022893,UniProtKB/TrEMBL:Q0PBA5,NCBI_GP:CAL34555.1;Name=CAL34555.1;Note=Original (2000) note: Cj0405%2C aroE%2C probable shikimate 5-dehydrogenase%2C len: 262 aa%3B similar to many e.g. AROE_ECOLI shikimate 5-dehydrogenase (EC 1.1.1.25) (272 aa)%2C fasta scores%3B opt: 255 z-score: 444.1 E(): 1.9e-17%2C 29.9%25 identity in 274 aa overlap. 41.2%25 identity to HP1249%3B~Updated (2006) note: Pfam domain PF01488 Shikimate / quinate 5-dehydrogenase family was identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Amino acid biosynthesis -Aromatic amino acid family%3B~PMID:3277621;gbkey=CDS;gene=aroE;inference=protein motif:Pfam:PF01488;locus_tag=Cj0405;product=shikimate 5-dehydrogenase;protein_id=CAL34555.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	369906	370583	.	+	.	ID=id-Cj0405;Note=HMMPfam hit to PF01488%2C Shikimate / quinate 5-dehydrogenase%2C score 8.1e-54;gbkey=misc_feature;gene=aroE;inference=protein motif:Pfam:PF01488;locus_tag=Cj0405
gi|15791399|ref|NC_002163.1|	EMBL	gene	370715	371614	.	-	.	ID=gene-Cj0406c;Name=Cj0406c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0406c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	370715	371614	.	-	0	ID=cds-CAL34556.1;Parent=gene-Cj0406c;Dbxref=EnsemblGenomes-Gn:Cj0406c,EnsemblGenomes-Tr:CAL34556,UniProtKB/TrEMBL:Q0PBA4,NCBI_GP:CAL34556.1;Name=CAL34556.1;Note=Original (2000) note: Cj0406c%2C probable lipoprotein%2C len: 299 aa%3B no Hp match. Contains N-terminal signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0406c;product=putative lipoprotein;protein_id=CAL34556.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	371534	371602	.	-	.	ID=id-Cj0406c;Note=1 probable transmembrane helix predicted for Cj0406c by TMHMM2.0 at aa 5-27;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0406c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	371564	371596	.	-	.	ID=id-Cj0406c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0406c
gi|15791399|ref|NC_002163.1|	EMBL	gene	371704	372519	.	+	.	ID=gene-Cj0407;Name=lgt;gbkey=Gene;gene=lgt;gene_biotype=protein_coding;locus_tag=Cj0407
gi|15791399|ref|NC_002163.1|	EMBL	CDS	371704	372519	.	+	0	ID=cds-CAL34557.1;Parent=gene-Cj0407;Dbxref=EnsemblGenomes-Gn:Cj0407,EnsemblGenomes-Tr:CAL34557,GOA:Q9PI98,InterPro:IPR001640,NCBI_GP:CAL34557.1;Name=CAL34557.1;Note=Original (2000) note: Cj0407%2C lgt%2C probable prolipoprotein diacylglyceryl transferase%2C len: 271 aa%3B similar to many e.g. LGT_ECOLI prolipoprotein diacylglyceryl transferase (EC 2.4.99.-) (291 aa)%2C fasta scores%3B opt: 182 z-score: 753.7 E(): 0%2C 32.0%25 identity in 281 aa overlap. 52.5%25 identity to HP0955. Contains PS01311 Prolipoprotein diacylglyceryl transferase signature%3B~Updated (2006) note: Pfam domain PF01790 Prolipoprotein diacylglyceryl transferase was identified within CDS. Seven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Synthesis and modification of macromolecules - Phospholipids%3B~PMID:8051048;gbkey=CDS;gene=lgt;inference=protein motif:TMHMM:2.0;locus_tag=Cj0407;product=prolipoprotein diacylglyceryl transferase;protein_id=CAL34557.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	371734	372504	.	+	.	ID=id-Cj0407;Note=HMMPfam hit to PF01790%2C Prolipoprotein diacylglyceryl transferase%2C score 4e-120;gbkey=misc_feature;gene=lgt;inference=protein motif:Pfam:PF01790;locus_tag=Cj0407
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	371770	371838	.	+	.	ID=id-Cj0407-2;Note=7 probable transmembrane helices predicted for Cj0407 by TMHMM2.0 at aa 23-45%2C 66-88%2C 103-125%2C 132-154%2C184-201%2C 206-225 and 240-262;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0407;part=1/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	371899	371967	.	+	.	ID=id-Cj0407-2;Note=7 probable transmembrane helices predicted for Cj0407 by TMHMM2.0 at aa 23-45%2C 66-88%2C 103-125%2C 132-154%2C184-201%2C 206-225 and 240-262;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0407;part=2/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372010	372078	.	+	.	ID=id-Cj0407-2;Note=7 probable transmembrane helices predicted for Cj0407 by TMHMM2.0 at aa 23-45%2C 66-88%2C 103-125%2C 132-154%2C184-201%2C 206-225 and 240-262;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0407;part=3/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372097	372165	.	+	.	ID=id-Cj0407-2;Note=7 probable transmembrane helices predicted for Cj0407 by TMHMM2.0 at aa 23-45%2C 66-88%2C 103-125%2C 132-154%2C184-201%2C 206-225 and 240-262;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0407;part=4/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372253	372306	.	+	.	ID=id-Cj0407-2;Note=7 probable transmembrane helices predicted for Cj0407 by TMHMM2.0 at aa 23-45%2C 66-88%2C 103-125%2C 132-154%2C184-201%2C 206-225 and 240-262;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0407;part=5/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372319	372378	.	+	.	ID=id-Cj0407-2;Note=7 probable transmembrane helices predicted for Cj0407 by TMHMM2.0 at aa 23-45%2C 66-88%2C 103-125%2C 132-154%2C184-201%2C 206-225 and 240-262;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0407;part=6/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372421	372489	.	+	.	ID=id-Cj0407-2;Note=7 probable transmembrane helices predicted for Cj0407 by TMHMM2.0 at aa 23-45%2C 66-88%2C 103-125%2C 132-154%2C184-201%2C 206-225 and 240-262;gbkey=misc_feature;gene=lgt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0407;part=7/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372154	372192	.	+	.	ID=id-Cj0407-3;Note=PS01311 Prolipoprotein diacylglyceryl transferase signature;gbkey=misc_feature;gene=lgt;inference=protein motif:Prosite:PS01311;locus_tag=Cj0407
gi|15791399|ref|NC_002163.1|	EMBL	gene	372589	373371	.	+	.	ID=gene-Cj0408;Name=frdC;gbkey=Gene;gene=frdC;gene_biotype=protein_coding;locus_tag=Cj0408
gi|15791399|ref|NC_002163.1|	EMBL	CDS	372589	373371	.	+	0	ID=cds-CAL34558.1;Parent=gene-Cj0408;Dbxref=EnsemblGenomes-Gn:Cj0408,EnsemblGenomes-Tr:CAL34558,GOA:Q0PBA2,InterPro:IPR000701,InterPro:IPR004224,UniProtKB/TrEMBL:Q0PBA2,NCBI_GP:CAL34558.1;Name=CAL34558.1;Note=Original (2000) note: Cj0408%2C frdC%2C probable fumarate reductase cytochrome B subunit%2C len: 260 aa%3B similar to FRDC_WOLSU fumarate reductase cytochrome B subunit (256 aa)%2C fasta scores%3B opt: 823 z-score: 1258.2 E(): 0%2C 53.6%25 identity in 235 aa overlap. 50.0%25 identity to HP0193%3B~Updated (2006) note: Pfam domain PF02967 Fumarate reductase respiratory complex was identified within CDS. Five probable transmembrane helices predicted by TMHMM2.0. Characterised within Wolinella succinogenes with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism -Tricarboxylic acid cycle%3B~PMID:9492313;gbkey=CDS;gene=frdC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0408;product=fumarate reductase cytochrome B subunit;protein_id=CAL34558.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372589	373314	.	+	.	ID=id-Cj0408;Note=HMMPfam hit to PF02967%2C Fumarate reductase respiratory complex%2C tr%2C score 8e-102;gbkey=misc_feature;gene=frdC;inference=protein motif:Pfam:PF02967;locus_tag=Cj0408
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372589	372600	.	+	.	ID=id-Cj0408-2;Note=PS00228 Tubulin-beta mRNA autoregulation signal;gbkey=misc_feature;gene=frdC;inference=protein motif:Prosite:PS00228;locus_tag=Cj0408
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372673	372741	.	+	.	ID=id-Cj0408-3;Note=5 probable transmembrane helices predicted for Cj0408 by TMHMM2.0 at aa 29-51%2C 73-95%2C 125-147%2C 167-189 and 213-235;gbkey=misc_feature;gene=frdC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0408;part=1/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372805	372873	.	+	.	ID=id-Cj0408-3;Note=5 probable transmembrane helices predicted for Cj0408 by TMHMM2.0 at aa 29-51%2C 73-95%2C 125-147%2C 167-189 and 213-235;gbkey=misc_feature;gene=frdC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0408;part=2/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372961	373029	.	+	.	ID=id-Cj0408-3;Note=5 probable transmembrane helices predicted for Cj0408 by TMHMM2.0 at aa 29-51%2C 73-95%2C 125-147%2C 167-189 and 213-235;gbkey=misc_feature;gene=frdC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0408;part=3/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	373087	373155	.	+	.	ID=id-Cj0408-3;Note=5 probable transmembrane helices predicted for Cj0408 by TMHMM2.0 at aa 29-51%2C 73-95%2C 125-147%2C 167-189 and 213-235;gbkey=misc_feature;gene=frdC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0408;part=4/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	373225	373293	.	+	.	ID=id-Cj0408-3;Note=5 probable transmembrane helices predicted for Cj0408 by TMHMM2.0 at aa 29-51%2C 73-95%2C 125-147%2C 167-189 and 213-235;gbkey=misc_feature;gene=frdC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0408;part=5/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	372808	372840	.	+	.	ID=id-Cj0408-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=frdC;inference=protein motif:Prosite:PS00013;locus_tag=Cj0408
gi|15791399|ref|NC_002163.1|	EMBL	gene	373355	375346	.	+	.	ID=gene-Cj0409;Name=frdA;gbkey=Gene;gene=frdA;gene_biotype=protein_coding;locus_tag=Cj0409
gi|15791399|ref|NC_002163.1|	EMBL	CDS	373355	375346	.	+	0	ID=cds-CAL34559.1;Parent=gene-Cj0409;Dbxref=EnsemblGenomes-Gn:Cj0409,EnsemblGenomes-Tr:CAL34559,GOA:Q0PBA1,InterPro:IPR003953,InterPro:IPR014006,InterPro:IPR015939,InterPro:IPR027477,UniProtKB/TrEMBL:Q0PBA1,NCBI_GP:CAL34559.1;Name=CAL34559.1;Note=Original (2000) note: Cj0409%2C frdA%2C probable fumarate reductase flavoprotein subunit%2C len: 663 aa%3B FRDA_WOLSU fumarate reductase flavoprotein subunit (EC 1.3.99.1) (656 aa)%2C fasta scores%3B opt: 3050 z-score: 3174.9 E(): 0%2C 68.2%25 identity in 660 aa overlap. 62.2%25 identity to HP0192. Contains Pfam match to entry PF00890 FAD_binding_2%2C FAD binding domain%2C score 535.80%2C E-value 2.9e-157%3B~Updated (2006) note: Pfam domain PF02910 Fumarate reductase/succinate dehydrogenase was identified within CDS. Characterised within Wolinella succinogenes with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism -Tricarboxylic acid cycle%3B~PMID:9492313;gbkey=CDS;gene=frdA;inference=protein motif:Pfam:PF02910;locus_tag=Cj0409;product=fumarate reductase flavoprotein subunit;protein_id=CAL34559.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	373742	374710	.	+	.	ID=id-Cj0409;Note=HMMPfam hit to PF00890%2C FAD binding domain%2C score 2e-160;gbkey=misc_feature;gene=frdA;inference=protein motif:Pfam:PF00890;locus_tag=Cj0409
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	374768	375160	.	+	.	ID=id-Cj0409-2;Note=HMMPfam hit to PF02910%2C Fumarate reductase/succinate dehydroge%2C score 6.4e-53;gbkey=misc_feature;gene=frdA;inference=protein motif:Pfam:PF02910;locus_tag=Cj0409
gi|15791399|ref|NC_002163.1|	EMBL	gene	375339	376064	.	+	.	ID=gene-Cj0410;Name=frdB;gbkey=Gene;gene=frdB;gene_biotype=protein_coding;locus_tag=Cj0410
gi|15791399|ref|NC_002163.1|	EMBL	CDS	375339	376064	.	+	0	ID=cds-CAL34560.1;Parent=gene-Cj0410;Dbxref=EnsemblGenomes-Gn:Cj0410,EnsemblGenomes-Tr:CAL34560,GOA:Q0PBA0,InterPro:IPR001041,InterPro:IPR004489,InterPro:IPR006058,InterPro:IPR009051,InterPro:IPR012675,InterPro:IPR017896,InterPro:IPR025192,UniProtKB/TrEMBL:Q0PBA0,NCBI_GP:CAL34560.1;Name=CAL34560.1;Note=Original (2000) note: Cj0410%2C frdB%2C probable fumarate reductase iron-sulfur protein%2C len: 723 aa%3B similar to FRDB_WOLSU fumarate reductase iron-sulfur protein (EC 1.3.99.1) (239 aa)%2C fasta scores%3B opt: 1211 z-score: 1762.6 E(): 0%2C 68.4%25 identity in 237 aa overlap. 65.8%25 identity to HP0191. Contains PS00197 2Fe-2S ferredoxins%2C iron-sulfur binding region signature and Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains.%2C score 41.20%2CE-value 1.1e-10%3B~Updated (2006) note: Pfam domain PF00111 2Fe-2S iron-sulfur cluster binding domain was identified within CDS. Characterised within Wolinella succinogenes with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism -Tricarboxylic acid cycle%3B~PMID:9492313;gbkey=CDS;gene=frdB;inference=protein motif:Prosite:PS00197;locus_tag=Cj0410;product=fumarate reductase iron-sulfur protein;protein_id=CAL34560.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	375420	375587	.	+	.	ID=id-Cj0410;Note=HMMPfam hit to PF00111%2C 2Fe-2S iron-sulfur cluster binding domain%2C score 0.0037;gbkey=misc_feature;gene=frdB;inference=protein motif:Pfam:PF00111;locus_tag=Cj0410
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	375507	375533	.	+	.	ID=id-Cj0410-2;Note=PS00197 2Fe-2S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=frdB;inference=protein motif:Prosite:PS00197;locus_tag=Cj0410
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	375768	375839	.	+	.	ID=id-Cj0410-3;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.0015;gbkey=misc_feature;gene=frdB;inference=protein motif:Pfam:PF00037;locus_tag=Cj0410
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	375948	375980	.	+	.	ID=id-Cj0410-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=frdB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0410
gi|15791399|ref|NC_002163.1|	EMBL	gene	376092	378278	.	+	.	ID=gene-Cj0411;Name=Cj0411;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0411
gi|15791399|ref|NC_002163.1|	EMBL	CDS	376092	378278	.	+	0	ID=cds-CAL34561.1;Parent=gene-Cj0411;Dbxref=EnsemblGenomes-Gn:Cj0411,EnsemblGenomes-Tr:CAL34561,GOA:Q0PB99,InterPro:IPR001401,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PB99,NCBI_GP:CAL34561.1;Name=CAL34561.1;Note=Original (2000) note: Cj0411%2C probable ATP/GTP binding protein%2C len: 728 aa%3B some similarity in C-term to YOR6_CALSR hypothetical protein (402 aa)%2C fasta scores%3B opt: 220 z-score: 284.9 E(): 1.4e-08%2C 25.2%25 identity in 425 aa overlap%2C and to C-term of YPBR_BACSU hypothetical protein (1193 aa)%2C fasta scores%3B opt: 173 z-score: 275.1 E(): 5e-08%2C 20.1%25 identity in 722 aa overlap. No Hp match. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF00350 Dynamin family protein was identified within CDS. Dynamin is a member of the G-protein superfamily clan. ATP/GTP binding proteins fall under this particular clan. Further support given to product function. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0411;product=putative ATP/GTP binding protein;protein_id=CAL34561.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	376578	377174	.	+	.	ID=id-Cj0411;Note=HMMPfam hit to PF01926%2C GTPase of unknown function%2Cscore 2e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF01926;locus_tag=Cj0411
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	376584	377171	.	+	.	ID=id-Cj0411-2;Note=HMMPfam hit to PF00350%2C Dynamin family%2C score 8.1e-52;gbkey=misc_feature;inference=protein motif:Pfam:PF00350;locus_tag=Cj0411
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	376596	376619	.	+	.	ID=id-Cj0411-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0411
gi|15791399|ref|NC_002163.1|	EMBL	gene	378268	380097	.	+	.	ID=gene-Cj0412;Name=Cj0412;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0412
gi|15791399|ref|NC_002163.1|	EMBL	CDS	378268	380097	.	+	0	ID=cds-CAL34562.1;Parent=gene-Cj0412;Dbxref=EnsemblGenomes-Gn:Cj0412,EnsemblGenomes-Tr:CAL34562,GOA:Q0PB98,InterPro:IPR001401,InterPro:IPR022812,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PB98,NCBI_GP:CAL34562.1;Name=CAL34562.1;Note=Original (2000) note: Cj0412%2C probable ATP/GTP binding protein%2C len: 609 aa%3B some similarity to YPBR_BACSU hypothetical protein (1193 aa)%2C fasta scores%3B opt: 172 z-score: 237.5 E(): 6.2e-06%2C 23.7%25 identity in 439 aa overlap. No Hp match. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF00350 Dynamin family protein was identified within CDS. Dynamin is a member of the G-protein superfamily clan. ATP/GTP binding proteins fall under this particular clan. Further support given to product function. Literature search identified paper giving further clues to product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0412;product=putative ATP/GTP binding protein;protein_id=CAL34562.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	378451	378924	.	+	.	ID=id-Cj0412;Note=HMMPfam hit to PF01926%2C GTPase of unknown function%2Cscore 1.5e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF01926;locus_tag=Cj0412
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	378457	378921	.	+	.	ID=id-Cj0412-2;Note=HMMPfam hit to PF00350%2C Dynamin family%2C score 6.6e-39;gbkey=misc_feature;inference=protein motif:Pfam:PF00350;locus_tag=Cj0412
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	378469	378492	.	+	.	ID=id-Cj0412-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0412
gi|15791399|ref|NC_002163.1|	EMBL	gene	380097	380801	.	+	.	ID=gene-Cj0413;Name=Cj0413;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0413
gi|15791399|ref|NC_002163.1|	EMBL	CDS	380097	380801	.	+	0	ID=cds-CAL34563.1;Parent=gene-Cj0413;Dbxref=EnsemblGenomes-Gn:Cj0413,EnsemblGenomes-Tr:CAL34563,InterPro:IPR006597,InterPro:IPR011990,UniProtKB/TrEMBL:Q0PB97,NCBI_GP:CAL34563.1;Name=CAL34563.1;Note=Original (2000) note: Cj0413%2C probable periplasmic protein%2C len: 234 aa%3B similar to several Hp proteins%3B HP0160%2C 30.3%25 identity%3B HP0211%2C 32.6%25 identity%3B HP1098 31.1%25 identity%3B HP0336 31.3%25 identity%3B HP0235 30.9%25 identity%3B HP0628 26.5%25 identity%3B and HP1117 26.9%25 identity. This is the only copy in C. jejuni%3B~Updated (2006) note: Pfam domain PF07719 Tetratricopeptide repeat was identified within CDS. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Pfam:PF07719;locus_tag=Cj0413;product=putative periplasmic protein;protein_id=CAL34563.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	380346	380447	.	+	.	ID=id-Cj0413;Note=HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 0.013;gbkey=misc_feature;inference=protein motif:Pfam:PF07719;locus_tag=Cj0413
gi|15791399|ref|NC_002163.1|	EMBL	gene	380937	381665	.	+	.	ID=gene-Cj0414;Name=Cj0414;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0414
gi|15791399|ref|NC_002163.1|	EMBL	CDS	380937	381665	.	+	0	ID=cds-CAL34564.1;Parent=gene-Cj0414;Dbxref=EnsemblGenomes-Gn:Cj0414,EnsemblGenomes-Tr:CAL34564,InterPro:IPR027056,UniProtKB/TrEMBL:Q0PB96,NCBI_GP:CAL34564.1;Name=CAL34564.1;Note=Original (2000) note: Cj0414%2C possible oxidoreductase subunit%2C len: 242 aa%3B some similarity to TR:O34213 (EMBL:U97665) Erwinia cypripedii gluconate dehydrogenase subunit III precursor (220 aa)%2C fasta scores%3B opt: 343 z-score: 502.3 E(): 1.1e-20%2C 32.6%25 identity in 193 aa overlap. No Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Literature search identified paper giving further clues to product function. Functional classification - Misc%3B~PMID:15231804;gbkey=CDS;locus_tag=Cj0414;product=putative oxidoreductase subunit;protein_id=CAL34564.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	380967	381035	.	+	.	ID=id-Cj0414;Note=1 probable transmembrane helix predicted for Cj0414 by TMHMM2.0 at aa 11-33;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0414
gi|15791399|ref|NC_002163.1|	EMBL	gene	381667	383388	.	+	.	ID=gene-Cj0415;Name=Cj0415;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0415
gi|15791399|ref|NC_002163.1|	EMBL	CDS	381667	383388	.	+	0	ID=cds-CAL34565.1;Parent=gene-Cj0415;Dbxref=EnsemblGenomes-Gn:Cj0415,EnsemblGenomes-Tr:CAL34565,GOA:Q0PB95,InterPro:IPR000172,InterPro:IPR007867,UniProtKB/TrEMBL:Q0PB95,NCBI_GP:CAL34565.1;Name=CAL34565.1;Note=Original (2000) note: Cj0415%2C possible oxidoreductase subunit%2C len: 573 aa%3B similar to e.g. TR:O34214 (EMBL:U97665) Erwinia cypripedii gluconate dehydrogenase subunit precursor (615 aa)%2C fasta scores%3B opt: 1025 z-score: 1674.4 E(): 0%2C 40.8%25 identity in 583 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00732 GMC (glucose-methanol-choline) oxidoreductase was identified within CDS when carrying out own Pfam search. This family is a member of the FAD/NAD(P)-binding Rossmann fold Superfamily clan. These proteins bind FAD as a cofactor. Product modified to more specific family member due to motif match. Literature search identified paper giving further related functional clues. No specific characterisaion with acceptable identity score has been carried out yet%2C so putative kept within product function. Literature search identified paper linking protein to glycoprotein (PMID:12186869). Functional classification -Misc%3B~PMID:15231804%2C PMID:12186869;gbkey=CDS;inference=protein motif:Pfam:PF00732;locus_tag=Cj0415;product=putative GMC oxidoreductase subunit;protein_id=CAL34565.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	383559	383657	.	+	.	ID=gene-Cj0416;Name=Cj0416;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0416
gi|15791399|ref|NC_002163.1|	EMBL	CDS	383559	383657	.	+	0	ID=cds-CAL34566.1;Parent=gene-Cj0416;Dbxref=EnsemblGenomes-Gn:Cj0416,EnsemblGenomes-Tr:CAL34566,UniProtKB/TrEMBL:Q0PB94,NCBI_GP:CAL34566.1;Name=CAL34566.1;Note=Original (2000) note: Cj0416%2C unknown%2C len: 32 aa%3B no Hp match%2C highly simlar to N-terminus of Cj0122 (88.2%25 identity in 34 aa overlap). Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0416;product=hypothetical protein Cj0416;protein_id=CAL34566.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	383677	383823	.	+	.	ID=gene-Cj0417;Name=Cj0417;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0417
gi|15791399|ref|NC_002163.1|	EMBL	CDS	383677	383823	.	+	0	ID=cds-CAL34567.1;Parent=gene-Cj0417;Dbxref=EnsemblGenomes-Gn:Cj0417,EnsemblGenomes-Tr:CAL34567,UniProtKB/TrEMBL:Q0PB93,NCBI_GP:CAL34567.1;Name=CAL34567.1;Note=Original (2000) note: Cj0417%2C unknown%2C len: 48 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0417;product=hypothetical protein Cj0417;protein_id=CAL34567.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	383947	384651	.	-	.	ID=gene-Cj0418c;Name=Cj0418c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0418c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	383947	384651	.	-	0	ID=cds-CAL34568.1;Parent=gene-Cj0418c;Dbxref=EnsemblGenomes-Gn:Cj0418c,EnsemblGenomes-Tr:CAL34568,InterPro:IPR021973,UniProtKB/TrEMBL:Q0PB92,NCBI_GP:CAL34568.1;Name=CAL34568.1;Note=Original (2000) note: Cj0418c%2C unknown%2C len: 234 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0418c;product=hypothetical protein Cj0418c;protein_id=CAL34568.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	384759	385121	.	+	.	ID=gene-Cj0419;Name=Cj0419;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0419
gi|15791399|ref|NC_002163.1|	EMBL	CDS	384759	385121	.	+	0	ID=cds-CAL34569.1;Parent=gene-Cj0419;Dbxref=EnsemblGenomes-Gn:Cj0419,EnsemblGenomes-Tr:CAL34569,GOA:Q0PB91,InterPro:IPR001310,InterPro:IPR011146,UniProtKB/TrEMBL:Q0PB91,NCBI_GP:CAL34569.1;Name=CAL34569.1;Note=Original (2000) note: Cj0419%2C unknown%2C len: 120 aa%3B no Hp match%3B~Updated (2006) note: Pfam domain PF01230 HIT (histidine triad) was identified within CDS by carrying out own Pfam search. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Literature search identified paper giving further information on HIT domains. Functional classification - Misc%3B~PMID:1472710%2C PMID:9164465;gbkey=CDS;inference=protein motif:Pfam:PF01230;locus_tag=Cj0419;product=putative histidine triad (HIT) family protein;protein_id=CAL34569.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	385195	385767	.	+	.	ID=gene-Cj0420;Name=Cj0420;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0420
gi|15791399|ref|NC_002163.1|	EMBL	CDS	385195	385767	.	+	0	ID=cds-CAL34570.1;Parent=gene-Cj0420;Dbxref=EnsemblGenomes-Gn:Cj0420,EnsemblGenomes-Tr:CAL34570,InterPro:IPR007372,UniProtKB/TrEMBL:Q0PB90,NCBI_GP:CAL34570.1;Name=CAL34570.1;Note=Original (2000) note: Cj0420%2C probable periplasmic protein%2C len: 190 aa%3B similar to hypothetical proteins e.g. YCEI_ECOLI (191 aa)%2C fasta scores%3B opt: 377 z-score: 504.2 E(): 8.7e-21%2C 37.4%25 identity in 195 aa overlap. 37.8%25 identity to HP1286. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF04264 YceI like family was identified within CDS. Product function was not altered since PF04264 is a base-induced periplasmic protein that has not been characterised. Literature search identified paper linking protein to be a glycoprotein. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:15231804;gbkey=CDS;inference=protein motif:Pfam:PF04264;locus_tag=Cj0420;product=putative periplasmic protein;protein_id=CAL34570.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	385255	385764	.	+	.	ID=id-Cj0420;Note=HMMPfam hit to PF04264%2C YceI like family%2C score 1e-77;gbkey=misc_feature;inference=protein motif:Pfam:PF04264;locus_tag=Cj0420
gi|15791399|ref|NC_002163.1|	EMBL	gene	385772	386728	.	-	.	ID=gene-Cj0421c;Name=Cj0421c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0421c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	385772	386728	.	-	0	ID=cds-CAL34571.1;Parent=gene-Cj0421c;Dbxref=EnsemblGenomes-Gn:Cj0421c,EnsemblGenomes-Tr:CAL34571,InterPro:IPR000160,UniProtKB/TrEMBL:Q0PB89,NCBI_GP:CAL34571.1;Name=CAL34571.1;Note=Original (2000) note: Cj0421c%2C probable integral membrane protein%2C len: 318 aa%3B no Hp match%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0421c;product=putative integral membrane protein;protein_id=CAL34571.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	386153	386212	.	-	.	ID=id-Cj0421c;Note=6 probable transmembrane helices predicted for Cj0421c by TMHMM2.0 at aa 2-24%2C 48-70%2C 82-99%2C 122-139%2C146-163 and 173-192;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0421c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	386240	386293	.	-	.	ID=id-Cj0421c;Note=6 probable transmembrane helices predicted for Cj0421c by TMHMM2.0 at aa 2-24%2C 48-70%2C 82-99%2C 122-139%2C146-163 and 173-192;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0421c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	386312	386365	.	-	.	ID=id-Cj0421c;Note=6 probable transmembrane helices predicted for Cj0421c by TMHMM2.0 at aa 2-24%2C 48-70%2C 82-99%2C 122-139%2C146-163 and 173-192;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0421c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	386432	386485	.	-	.	ID=id-Cj0421c;Note=6 probable transmembrane helices predicted for Cj0421c by TMHMM2.0 at aa 2-24%2C 48-70%2C 82-99%2C 122-139%2C146-163 and 173-192;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0421c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	386519	386587	.	-	.	ID=id-Cj0421c;Note=6 probable transmembrane helices predicted for Cj0421c by TMHMM2.0 at aa 2-24%2C 48-70%2C 82-99%2C 122-139%2C146-163 and 173-192;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0421c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	386657	386725	.	-	.	ID=id-Cj0421c;Note=6 probable transmembrane helices predicted for Cj0421c by TMHMM2.0 at aa 2-24%2C 48-70%2C 82-99%2C 122-139%2C146-163 and 173-192;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0421c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	gene	386790	386999	.	-	.	ID=gene-Cj0422c;Name=Cj0422c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0422c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	386790	386999	.	-	0	ID=cds-CAL34572.1;Parent=gene-Cj0422c;Dbxref=EnsemblGenomes-Gn:Cj0422c,EnsemblGenomes-Tr:CAL34572,UniProtKB/TrEMBL:Q0PB88,NCBI_GP:CAL34572.1;Name=CAL34572.1;Note=Original (2000) note: Cj0422c%2C unknown%2C len: 69 aa%3B no Hp match. Contains probable helix-turn-helix motif at aa 5-26 (Score 1410%2C +3.99 SD). Functional classification - Broad regulatory functions;gbkey=CDS;locus_tag=Cj0422c;product=putative H-T-H containing protein;protein_id=CAL34572.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	387168	387395	.	+	.	ID=gene-Cj0423;Name=Cj0423;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0423
gi|15791399|ref|NC_002163.1|	EMBL	CDS	387168	387395	.	+	0	ID=cds-CAL34573.1;Parent=gene-Cj0423;Dbxref=EnsemblGenomes-Gn:Cj0423,EnsemblGenomes-Tr:CAL34573,InterPro:IPR016410,UniProtKB/TrEMBL:Q0PB87,NCBI_GP:CAL34573.1;Name=CAL34573.1;Note=Original (2000) note: Cj0423%2C probable integral membrane protein%2C len: 75 aa%3B similar to immunity proteins of T4 and T2 phage e.g. IMM_BPT4 immunity protein (83 aa)%2Cfasta scores%3B opt: 174 z-score: 240.8 E(): 4e-06%2C 40.2%25 identity in 82 aa overlap. No Hp match%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0423;product=putative integral membrane protein;protein_id=CAL34573.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	387180	387248	.	+	.	ID=id-Cj0423;Note=2 probable transmembrane helices predicted for Cj0423 by TMHMM2.0 at aa 5-27 and 37-59;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0423;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	387276	387344	.	+	.	ID=id-Cj0423;Note=2 probable transmembrane helices predicted for Cj0423 by TMHMM2.0 at aa 5-27 and 37-59;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0423;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	387404	388036	.	+	.	ID=gene-Cj0424;Name=Cj0424;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0424
gi|15791399|ref|NC_002163.1|	EMBL	CDS	387404	388036	.	+	0	ID=cds-CAL34574.1;Parent=gene-Cj0424;Dbxref=EnsemblGenomes-Gn:Cj0424,EnsemblGenomes-Tr:CAL34574,InterPro:IPR011652,UniProtKB/TrEMBL:Q0PB86,NCBI_GP:CAL34574.1;Name=CAL34574.1;Note=Original (2000) note: Cj0424%2C probable acidic periplasmic protein%2C len: 210 aa%3B no Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF07661 MORN repeat variant was identified within CDS. The MORN (Membrane Occupation and Recognition Nexus) repeat is found in multiple copies in several proteins. The function of this motif is unknown. Literature search identified paper giving functional link to iron stimulation. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:15632442;gbkey=CDS;inference=protein motif:Pfam:PF07661;locus_tag=Cj0424;product=putative acidic periplasmic protein;protein_id=CAL34574.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	387425	387457	.	+	.	ID=id-Cj0424;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0424
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	387488	387553	.	+	.	ID=id-Cj0424-2;Note=HMMPfam hit to PF07661%2C MORN repeat variant%2C score 3.3;gbkey=misc_feature;inference=protein motif:Pfam:PF07661;locus_tag=Cj0424
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	387563	387628	.	+	.	ID=id-Cj0424-3;Note=HMMPfam hit to PF07661%2C MORN repeat variant%2C score 0.0044;gbkey=misc_feature;inference=protein motif:Pfam:PF07661;locus_tag=Cj0424
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	387635	387700	.	+	.	ID=id-Cj0424-4;Note=HMMPfam hit to PF07661%2C MORN repeat variant%2C score 0.0016;gbkey=misc_feature;inference=protein motif:Pfam:PF07661;locus_tag=Cj0424
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	387707	387772	.	+	.	ID=id-Cj0424-5;Note=HMMPfam hit to PF07661%2C MORN repeat variant%2C score 43;gbkey=misc_feature;inference=protein motif:Pfam:PF07661;locus_tag=Cj0424
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	387797	387862	.	+	.	ID=id-Cj0424-6;Note=HMMPfam hit to PF07661%2C MORN repeat variant%2C score 0.12;gbkey=misc_feature;inference=protein motif:Pfam:PF07661;locus_tag=Cj0424
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	387872	387937	.	+	.	ID=id-Cj0424-7;Note=HMMPfam hit to PF07661%2C MORN repeat variant%2C score 0.0083;gbkey=misc_feature;inference=protein motif:Pfam:PF07661;locus_tag=Cj0424
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	387944	388006	.	+	.	ID=id-Cj0424-8;Note=HMMPfam hit to PF07661%2C MORN repeat variant%2C score 4.1;gbkey=misc_feature;inference=protein motif:Pfam:PF07661;locus_tag=Cj0424
gi|15791399|ref|NC_002163.1|	EMBL	gene	388049	388465	.	+	.	ID=gene-Cj0425;Name=Cj0425;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0425
gi|15791399|ref|NC_002163.1|	EMBL	CDS	388049	388465	.	+	0	ID=cds-CAL34575.1;Parent=gene-Cj0425;Dbxref=EnsemblGenomes-Gn:Cj0425,EnsemblGenomes-Tr:CAL34575,UniProtKB/TrEMBL:Q0PB85,NCBI_GP:CAL34575.1;Name=CAL34575.1;Note=Original (2000) note: Cj0425%2C probable periplasmic protein%2C len: 138 aa%3B no Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Literature search identified paper giving functional link to iron stimulation. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:15632442;gbkey=CDS;locus_tag=Cj0425;product=putative periplasmic protein;protein_id=CAL34575.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	388595	390172	.	+	.	ID=gene-Cj0426;Name=Cj0426;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0426
gi|15791399|ref|NC_002163.1|	EMBL	CDS	388595	390172	.	+	0	ID=cds-CAL34576.1;Parent=gene-Cj0426;Dbxref=EnsemblGenomes-Gn:Cj0426,EnsemblGenomes-Tr:CAL34576,GOA:Q0PB84,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PB84,NCBI_GP:CAL34576.1;Name=CAL34576.1;Note=Original (2000) note: Cj0426%2C probable ABC transporter ATP-binding protein%2C len: 525 aa%3B simlar to many e.g. YBIT_ECOLI hypothetical ABC transporter ATP-binding protein (530 aa)%2C fasta scores%3B opt: 1461 z-score: 1750.6 E(): 0%2C 42.8%25 identity in 526 aa overlap. 60.5%25 identity to HP0853. Contains 2x PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%2C scores 115.00%2C E-value 1.4e-30%2C and 120.70%2C E-value 2.7e-32%3B~Updated (2006) note: Some characterisation within Escherichia coli with acceptable identity score. Putative added to product function as original designation was only hypothetical. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0426;product=putative ABC transporter ATP-binding protein;protein_id=CAL34576.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	388673	389275	.	+	.	ID=id-Cj0426;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 1.9e-33;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj0426
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	388694	388717	.	+	.	ID=id-Cj0426-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0426
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	389621	390115	.	+	.	ID=id-Cj0426-3;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 1.1e-33;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj0426
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	389642	389665	.	+	.	ID=id-Cj0426-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0426
gi|15791399|ref|NC_002163.1|	EMBL	gene	390162	390497	.	+	.	ID=gene-Cj0427;Name=Cj0427;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0427
gi|15791399|ref|NC_002163.1|	EMBL	CDS	390162	390497	.	+	0	ID=cds-CAL34577.1;Parent=gene-Cj0427;Dbxref=EnsemblGenomes-Gn:Cj0427,EnsemblGenomes-Tr:CAL34577,UniProtKB/TrEMBL:Q0PB83,NCBI_GP:CAL34577.1;Name=CAL34577.1;Note=Original (2000) note: Cj0427%2C unknown%2C len: 111 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0427;product=hypothetical protein Cj0427;protein_id=CAL34577.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	390572	390955	.	+	.	ID=gene-Cj0428;Name=Cj0428;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0428
gi|15791399|ref|NC_002163.1|	EMBL	CDS	390572	390955	.	+	0	ID=cds-CAL34578.1;Parent=gene-Cj0428;Dbxref=EnsemblGenomes-Gn:Cj0428,EnsemblGenomes-Tr:CAL34578,UniProtKB/TrEMBL:Q0PB82,NCBI_GP:CAL34578.1;Name=CAL34578.1;Note=Original (2000) note: Cj0428%2C unknown%2C len: 127 aa%3B no Hp match%3B~Updated (2006) note: Literature search identified papers linking product function to be involved with motility. Functional classification - Unknown%3B~PMID:15812042%2C PMID:14985343;gbkey=CDS;locus_tag=Cj0428;product=hypothetical protein Cj0428;protein_id=CAL34578.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	390999	391583	.	-	.	ID=gene-Cj0429c;Name=Cj0429c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0429c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	390999	391583	.	-	0	ID=cds-CAL34579.1;Parent=gene-Cj0429c;Dbxref=EnsemblGenomes-Gn:Cj0429c,EnsemblGenomes-Tr:CAL34579,InterPro:IPR001498,InterPro:IPR020568,InterPro:IPR023582,UniProtKB/TrEMBL:Q0PB81,NCBI_GP:CAL34579.1;Name=CAL34579.1;Note=Original (2000) note: Cj0429c%2C unknown%2C len: 194 aa%3B similar to hypothetical proteins e.g. YIGZ_ECOLI (205 aa)%2C fasta scores%3B opt: 241 z-score: 370.8 E(): 2.3e-13%2C40.2%25 identity in 112 aa overlap. 39.1%25 identity to HP1485 (misannotated as proline dipeptidase)%3B~Updated (2006) note: Pfam domain PF01205 Uncharacterized protein family (UPF0029) was identified within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01205;locus_tag=Cj0429c;product=conserved hypothetical protein Cj0429c;protein_id=CAL34579.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	391224	391544	.	-	.	ID=id-Cj0429c;Note=HMMPfam hit to PF01205%2C Uncharacterized protein family UPF0029%2C score 3.1e-47;gbkey=misc_feature;inference=protein motif:Pfam:PF01205;locus_tag=Cj0429c
gi|15791399|ref|NC_002163.1|	EMBL	gene	391711	392937	.	+	.	ID=gene-Cj0430;Name=Cj0430;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0430
gi|15791399|ref|NC_002163.1|	EMBL	CDS	391711	392937	.	+	0	ID=cds-CAL34580.1;Parent=gene-Cj0430;Dbxref=EnsemblGenomes-Gn:Cj0430,EnsemblGenomes-Tr:CAL34580,UniProtKB/TrEMBL:Q0PB80,NCBI_GP:CAL34580.1;Name=CAL34580.1;Note=Original (2000) note: Cj0430%2C probable integral membrane protein%2C len: 408 aa%3B 33.8%25 identity to HP1235%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Literature search identified paper linking product function to stress response. Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:16045618;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0430;product=putative integral membrane protein;protein_id=CAL34580.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	391735	391803	.	+	.	ID=id-Cj0430;Note=9 probable transmembrane helices predicted for Cj0430 by TMHMM2.0 at aa 9-31%2C 69-91%2C 104-137%2C 147-169%2C176-195%2C 205-227%2C 239-256%2C 260-277 and 298-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0430;part=1/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	391915	391983	.	+	.	ID=id-Cj0430;Note=9 probable transmembrane helices predicted for Cj0430 by TMHMM2.0 at aa 9-31%2C 69-91%2C 104-137%2C 147-169%2C176-195%2C 205-227%2C 239-256%2C 260-277 and 298-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0430;part=2/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	392020	392121	.	+	.	ID=id-Cj0430;Note=9 probable transmembrane helices predicted for Cj0430 by TMHMM2.0 at aa 9-31%2C 69-91%2C 104-137%2C 147-169%2C176-195%2C 205-227%2C 239-256%2C 260-277 and 298-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0430;part=3/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	392149	392217	.	+	.	ID=id-Cj0430;Note=9 probable transmembrane helices predicted for Cj0430 by TMHMM2.0 at aa 9-31%2C 69-91%2C 104-137%2C 147-169%2C176-195%2C 205-227%2C 239-256%2C 260-277 and 298-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0430;part=4/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	392236	392295	.	+	.	ID=id-Cj0430;Note=9 probable transmembrane helices predicted for Cj0430 by TMHMM2.0 at aa 9-31%2C 69-91%2C 104-137%2C 147-169%2C176-195%2C 205-227%2C 239-256%2C 260-277 and 298-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0430;part=5/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	392323	392391	.	+	.	ID=id-Cj0430;Note=9 probable transmembrane helices predicted for Cj0430 by TMHMM2.0 at aa 9-31%2C 69-91%2C 104-137%2C 147-169%2C176-195%2C 205-227%2C 239-256%2C 260-277 and 298-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0430;part=6/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	392425	392478	.	+	.	ID=id-Cj0430;Note=9 probable transmembrane helices predicted for Cj0430 by TMHMM2.0 at aa 9-31%2C 69-91%2C 104-137%2C 147-169%2C176-195%2C 205-227%2C 239-256%2C 260-277 and 298-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0430;part=7/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	392488	392541	.	+	.	ID=id-Cj0430;Note=9 probable transmembrane helices predicted for Cj0430 by TMHMM2.0 at aa 9-31%2C 69-91%2C 104-137%2C 147-169%2C176-195%2C 205-227%2C 239-256%2C 260-277 and 298-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0430;part=8/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	392602	392670	.	+	.	ID=id-Cj0430;Note=9 probable transmembrane helices predicted for Cj0430 by TMHMM2.0 at aa 9-31%2C 69-91%2C 104-137%2C 147-169%2C176-195%2C 205-227%2C 239-256%2C 260-277 and 298-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0430;part=9/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	392930	393544	.	+	.	ID=gene-Cj0431;Name=Cj0431;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0431
gi|15791399|ref|NC_002163.1|	EMBL	CDS	392930	393544	.	+	0	ID=cds-CAL34581.1;Parent=gene-Cj0431;Dbxref=EnsemblGenomes-Gn:Cj0431,EnsemblGenomes-Tr:CAL34581,UniProtKB/TrEMBL:Q0PB79,NCBI_GP:CAL34581.1;Name=CAL34581.1;Note=Original (2000) note: Cj0431%2C possible periplasmic ATP/GTP-binding protein%2C len: 204 aa%3B no Hp match%3B contains possible N-terminal signal sequence and PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0431;product=putative periplasmic ATP/GTP-binding protein;protein_id=CAL34581.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	392942	393010	.	+	.	ID=id-Cj0431;Note=1 probable transmembrane helix predicted for Cj0431 by TMHMM2.0 at aa 5-27;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0431
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	393227	393250	.	+	.	ID=id-Cj0431-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0431
gi|15791399|ref|NC_002163.1|	EMBL	rRNA	394130	395642	.	+	.	ID=rna-gi|15791399|ref|NC_002163.1|:394130..395642;gbkey=rRNA;product=16S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	394130	395642	.	+	.	ID=exon-gi|15791399|ref|NC_002163.1|:394130..395642-1;Parent=rna-gi|15791399|ref|NC_002163.1|:394130..395642;gbkey=rRNA;product=16S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	gene	395747	395822	.	+	.	ID=gene-tRNA-Ala-2;Name=tRNA-Ala;gbkey=Gene;gene=tRNA-Ala;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	395747	395822	.	+	.	ID=rna-tRNA-Ala-2;Parent=gene-tRNA-Ala-2;Note=tRNA Ala anticodon TGC%2C Cove score 92.14;gbkey=tRNA;gene=tRNA-Ala;product=tRNA-Ala
gi|15791399|ref|NC_002163.1|	EMBL	exon	395747	395822	.	+	.	ID=exon-tRNA-Ala-2-1;Parent=rna-tRNA-Ala-2;Note=tRNA Ala anticodon TGC%2C Cove score 92.14;gbkey=tRNA;gene=tRNA-Ala;product=tRNA-Ala
gi|15791399|ref|NC_002163.1|	EMBL	gene	395831	395907	.	+	.	ID=gene-tRNA-Ile-2;Name=tRNA-Ile;gbkey=Gene;gene=tRNA-Ile;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	395831	395907	.	+	.	ID=rna-tRNA-Ile-2;Parent=gene-tRNA-Ile-2;Note=tRNA Ile anticodon GAT%2C Cove score 93.24;gbkey=tRNA;gene=tRNA-Ile;product=tRNA-Ile
gi|15791399|ref|NC_002163.1|	EMBL	exon	395831	395907	.	+	.	ID=exon-tRNA-Ile-2-1;Parent=rna-tRNA-Ile-2;Note=tRNA Ile anticodon GAT%2C Cove score 93.24;gbkey=tRNA;gene=tRNA-Ile;product=tRNA-Ile
gi|15791399|ref|NC_002163.1|	EMBL	rRNA	396449	399360	.	+	.	ID=rna-gi|15791399|ref|NC_002163.1|:396449..399360;gbkey=rRNA;product=23S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	396449	399360	.	+	.	ID=exon-gi|15791399|ref|NC_002163.1|:396449..399360-1;Parent=rna-gi|15791399|ref|NC_002163.1|:396449..399360;gbkey=rRNA;product=23S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	rRNA	399644	399763	.	+	.	ID=rna-gi|15791399|ref|NC_002163.1|:399644..399763;gbkey=rRNA;product=5S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	399644	399763	.	+	.	ID=exon-gi|15791399|ref|NC_002163.1|:399644..399763-1;Parent=rna-gi|15791399|ref|NC_002163.1|:399644..399763;gbkey=rRNA;product=5S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	gene	399936	401144	.	-	.	ID=gene-Cj0432c;Name=murD;gbkey=Gene;gene=murD;gene_biotype=protein_coding;locus_tag=Cj0432c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	399936	401144	.	-	0	ID=cds-CAL34582.1;Parent=gene-Cj0432c;Dbxref=EnsemblGenomes-Gn:Cj0432c,EnsemblGenomes-Tr:CAL34582,GOA:Q9PI73,InterPro:IPR004101,InterPro:IPR005762,InterPro:IPR013221,NCBI_GP:CAL34582.1;Name=CAL34582.1;Note=Original (2000) note: Cj0432c%2C murD%2C probable UDP-N-acetylmuramoylalanine--D-glutamate ligase%2C len: 402 aa%3B similar to many e.g. MURD_BACSU UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9) (451 aa)%2C fasta scores%3B opt: 245 z-score: 510.4 E(): 3.9e-21%2C 29.3%25 identity in 382 aa overlap. 45.8%25 identity to HP0494. Contains PS01011 Folylpolyglutamate synthase signature 1%3B~Updated (2006) note: Pfam domains PF01225 Mur ligase family and PF02875 Mur ligase family%2C glutamate ligase domain was identified within CDS. Further support given to product function. Characterised within Bacillus subtilis and Escherichia coli with marginal identity scores. Putative not added to product function. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:9218784;gbkey=CDS;gene=murD;inference=protein motif:Prosite:PS01011;locus_tag=Cj0432c;product=UDP-N-acetylmuramoylalanine--D-glutamate ligase;protein_id=CAL34582.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	400119	400352	.	-	.	ID=id-Cj0432c;Note=HMMPfam hit to PF02875%2C Mur ligase family%2Cglutamate ligase doma%2C score 0.00084;gbkey=misc_feature;gene=murD;inference=protein motif:Pfam:PF02875;locus_tag=Cj0432c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	400386	401057	.	-	.	ID=id-Cj0432c-2;Note=HMMPfam hit to PF01225%2C Mur ligase family%2Ccatalytic domain%2C score 9.5e-09;gbkey=misc_feature;gene=murD;inference=protein motif:Pfam:PF01225;locus_tag=Cj0432c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	400797	400868	.	-	.	ID=id-Cj0432c-3;Note=PS01011 Folylpolyglutamate synthase signature 1;gbkey=misc_feature;gene=murD;inference=protein motif:Prosite:PS01011;locus_tag=Cj0432c
gi|15791399|ref|NC_002163.1|	EMBL	gene	401144	402205	.	-	.	ID=gene-Cj0433c;Name=mraY;gbkey=Gene;gene=mraY;gene_biotype=protein_coding;locus_tag=Cj0433c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	401144	402205	.	-	0	ID=cds-CAL34583.1;Parent=gene-Cj0433c;Dbxref=EnsemblGenomes-Gn:Cj0433c,EnsemblGenomes-Tr:CAL34583,GOA:Q9PI72,InterPro:IPR000715,InterPro:IPR003524,InterPro:IPR018480,NCBI_GP:CAL34583.1;Name=CAL34583.1;Note=Original (2000) note: Cj0433c%2C mraY%2C probable phospho-N-acetylmuramoyl-pentapeptide-transferase%2C len: 353 aa%3B similar to many e.g. MRAY_ECOLI phospho-N-acetylmuramoyl-pentapeptide-transferase (EC 2.7.8.13) (360 aa)%2C fasta scores%3B opt: 989 z-score: 1409.9 E(): 0%2C 42.5%25 identity in 348 aa overlap. 54.8%25 identity to HP0493. Contains Pfam match to entry PF00953 Glycos_transf_4%2C Glycosyl transferase%2C score 210.90%2CE-value 1.9e-59%3B~Updated (2006) note: Ten probable transmembrane helices predicted by TMHMM2.0 within CDS. Also Prosite motifs PS01347 MRAY_1%2CPhospho-N-acetylmuramoyl-pentapeptide transferase and PS01348 MRAY_2%2C Phospho-N-acetylmuramoyl-pentapeptide transferase were identified. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:1846850;gbkey=CDS;gene=mraY;inference=protein motif:TMHMM:2.0;locus_tag=Cj0433c;product=phospho-N-acetylmuramoyl-pentapeptide-transferase;protein_id=CAL34583.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	401156	401215	.	-	.	ID=id-Cj0433c;Note=10 probable transmembrane helices predicted for Cj0433c by TMHMM2.0 at aa 20-42%2C 63-85%2C 90-108%2C 129-147%2C162-184%2C 189-211%2C 226-248%2C 255-277%2C 282-304 and 331-350;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0;locus_tag=Cj0433c;part=1/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	401294	401362	.	-	.	ID=id-Cj0433c;Note=10 probable transmembrane helices predicted for Cj0433c by TMHMM2.0 at aa 20-42%2C 63-85%2C 90-108%2C 129-147%2C162-184%2C 189-211%2C 226-248%2C 255-277%2C 282-304 and 331-350;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0;locus_tag=Cj0433c;part=2/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	401375	401443	.	-	.	ID=id-Cj0433c;Note=10 probable transmembrane helices predicted for Cj0433c by TMHMM2.0 at aa 20-42%2C 63-85%2C 90-108%2C 129-147%2C162-184%2C 189-211%2C 226-248%2C 255-277%2C 282-304 and 331-350;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0;locus_tag=Cj0433c;part=3/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	401462	401530	.	-	.	ID=id-Cj0433c;Note=10 probable transmembrane helices predicted for Cj0433c by TMHMM2.0 at aa 20-42%2C 63-85%2C 90-108%2C 129-147%2C162-184%2C 189-211%2C 226-248%2C 255-277%2C 282-304 and 331-350;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0;locus_tag=Cj0433c;part=4/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	401573	401641	.	-	.	ID=id-Cj0433c;Note=10 probable transmembrane helices predicted for Cj0433c by TMHMM2.0 at aa 20-42%2C 63-85%2C 90-108%2C 129-147%2C162-184%2C 189-211%2C 226-248%2C 255-277%2C 282-304 and 331-350;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0;locus_tag=Cj0433c;part=5/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	401654	401722	.	-	.	ID=id-Cj0433c;Note=10 probable transmembrane helices predicted for Cj0433c by TMHMM2.0 at aa 20-42%2C 63-85%2C 90-108%2C 129-147%2C162-184%2C 189-211%2C 226-248%2C 255-277%2C 282-304 and 331-350;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0;locus_tag=Cj0433c;part=6/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	401765	401821	.	-	.	ID=id-Cj0433c;Note=10 probable transmembrane helices predicted for Cj0433c by TMHMM2.0 at aa 20-42%2C 63-85%2C 90-108%2C 129-147%2C162-184%2C 189-211%2C 226-248%2C 255-277%2C 282-304 and 331-350;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0;locus_tag=Cj0433c;part=7/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	401882	401938	.	-	.	ID=id-Cj0433c;Note=10 probable transmembrane helices predicted for Cj0433c by TMHMM2.0 at aa 20-42%2C 63-85%2C 90-108%2C 129-147%2C162-184%2C 189-211%2C 226-248%2C 255-277%2C 282-304 and 331-350;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0;locus_tag=Cj0433c;part=8/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	401951	402019	.	-	.	ID=id-Cj0433c;Note=10 probable transmembrane helices predicted for Cj0433c by TMHMM2.0 at aa 20-42%2C 63-85%2C 90-108%2C 129-147%2C162-184%2C 189-211%2C 226-248%2C 255-277%2C 282-304 and 331-350;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0;locus_tag=Cj0433c;part=9/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	402080	402148	.	-	.	ID=id-Cj0433c;Note=10 probable transmembrane helices predicted for Cj0433c by TMHMM2.0 at aa 20-42%2C 63-85%2C 90-108%2C 129-147%2C162-184%2C 189-211%2C 226-248%2C 255-277%2C 282-304 and 331-350;gbkey=misc_feature;gene=mraY;inference=protein motif:TMHMM:2.0;locus_tag=Cj0433c;part=10/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	401357	401932	.	-	.	ID=id-Cj0433c-2;Note=HMMPfam hit to PF00953%2C Glycosyl transferase%2C score 2.9e-62;gbkey=misc_feature;gene=mraY;inference=protein motif:Pfam:PF00953;locus_tag=Cj0433c
gi|15791399|ref|NC_002163.1|	EMBL	gene	402285	403763	.	+	.	ID=gene-Cj0434;Name=pgm;gbkey=Gene;gene=pgm;gene_biotype=protein_coding;locus_tag=Cj0434
gi|15791399|ref|NC_002163.1|	EMBL	CDS	402285	403763	.	+	0	ID=cds-CAL34584.1;Parent=gene-Cj0434;Dbxref=EnsemblGenomes-Gn:Cj0434,EnsemblGenomes-Tr:CAL34584,GOA:Q9PI71,InterPro:IPR005995,InterPro:IPR006124,InterPro:IPR011258,InterPro:IPR017849,InterPro:IPR017850,NCBI_GP:CAL34584.1;Name=CAL34584.1;Note=Original (2000) note: Cj0434%2C pgm%2C probable phosphoglycerate mutase%2C len: 492 aa%3B highly similar to many e.g. PMGI_BACSU 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1) (510 aa)%2C fasta scores%3B opt: 638 z-score: 1364.7 E(): 0%2C 42.6%25 identity in 502 aa overlap. 55.9%25 identity to HP0974%3B~Updated (2006) note: Pfam domain PF06415 BPG-independent PGAM N-terminus and also PF01676 Metalloenzyme superfamily was identified within CDS. PF06415 motif represents the N-terminal region of the 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (EC:5.4.2.1). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). PF01676 motif includes phosphopentomutase DEOB_ECO57 and 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase%2C GPMI_ECOLI. Product modified to more specific mutase due to motif results. Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Glycolysis%3B~PMID:10437801;gbkey=CDS;gene=pgm;inference=protein motif:Pfam:PF06415;locus_tag=Cj0434;product=2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase;protein_id=CAL34584.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	402285	403325	.	+	.	ID=id-Cj0434;Note=HMMPfam hit to PF06415%2C BPG-independent PGAM N-terminus (iPGM_N%2C score 1.4e-217;gbkey=misc_feature;gene=pgm;inference=protein motif:Pfam:PF06415;locus_tag=Cj0434
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	403353	403697	.	+	.	ID=id-Cj0434-2;Note=HMMPfam hit to PF01676%2C Metalloenzyme superfamily%2Cscore 4.8e-35;gbkey=misc_feature;gene=pgm;inference=protein motif:Pfam:PF01676;locus_tag=Cj0434
gi|15791399|ref|NC_002163.1|	EMBL	gene	403835	404578	.	+	.	ID=gene-Cj0435;Name=fabG;gbkey=Gene;gene=fabG;gene_biotype=protein_coding;locus_tag=Cj0435
gi|15791399|ref|NC_002163.1|	EMBL	CDS	403835	404578	.	+	0	ID=cds-CAL34585.1;Parent=gene-Cj0435;Dbxref=EnsemblGenomes-Gn:Cj0435,EnsemblGenomes-Tr:CAL34585,GOA:Q0PB75,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR011284,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q0PB75,NCBI_GP:CAL34585.1;Name=CAL34585.1;Note=Original (2000) note: Cj0435%2C fabG%2C probable 3-oxoacyl-[acyl-carrier protein] reductase%2C len: 247 aa%3B highly similar to many e.g. FABG_ECOLI 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100) (244 aa)%2C fasta scores%3B opt: 669 z-score: 963.1 E(): 0S%2C45.2%25 identity in 248 aa overlap. 69.2%25 identity to HP0561. Contains PS00061 Short-chain dehydrogenases/reductases family signature%2C Pfam match to entry PF00106 adh_short%2C Alcohol/other dehydrogenases%2Cshort chain type%2C score 208.00%2C E-value 1.4e-58 and Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%2C score 51.50%2C E-value 1.9e-11%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Fatty acid biosynthesis%3B~PMID:1556094;gbkey=CDS;gene=fabG;inference=protein motif:Prosite:PS00061;locus_tag=Cj0435;product=3-oxoacyl-[acyl-carrier protein] reductase;protein_id=CAL34585.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	403856	404569	.	+	.	ID=id-Cj0435;Note=HMMPfam hit to PF00106%2C short chain dehydrogenase%2Cscore 3.3e-73;gbkey=misc_feature;gene=fabG;inference=protein motif:Pfam:PF00106;locus_tag=Cj0435
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	404258	404344	.	+	.	ID=id-Cj0435-2;Note=PS00061 Short-chain dehydrogenases/reductases family signature;gbkey=misc_feature;gene=fabG;inference=protein motif:Prosite:PS00061;locus_tag=Cj0435
gi|15791399|ref|NC_002163.1|	EMBL	gene	404585	404995	.	+	.	ID=gene-Cj0436;Name=Cj0436;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0436
gi|15791399|ref|NC_002163.1|	EMBL	CDS	404585	404995	.	+	0	ID=cds-CAL34586.1;Parent=gene-Cj0436;Dbxref=EnsemblGenomes-Gn:Cj0436,EnsemblGenomes-Tr:CAL34586,GOA:Q0PB74,InterPro:IPR011576,InterPro:IPR012349,UniProtKB/TrEMBL:Q0PB74,NCBI_GP:CAL34586.1;Name=CAL34586.1;Note=Original (2000) note: Cj0436%2C unknown%2C len: 136 aa%3B no Hp match%3B~Updated (2006) note: Pfam domain PF01243 Pyridoxamine 5'-phosphate oxidase was identified within CDS. Product function modified to more specific family member based on motif match. Pyridoxamine 5'-phosphate oxidase (1.4.3.5) is a FMN flavoprotein involved in the de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate. It oxidizes pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P. No specific characterisation with acceptable identity scores has been carried out yet. Putative kept within product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Pyridoxine;gbkey=CDS;inference=protein motif:Pfam:PF01243;locus_tag=Cj0436;product=putative pyridoxamine 5'-phosphate oxidase;protein_id=CAL34586.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	404594	404848	.	+	.	ID=id-Cj0436;Note=HMMPfam hit to PF01243%2C Pyridoxamine 5'-phosphate oxidase%2C score 9.8e-09;gbkey=misc_feature;inference=protein motif:Pfam:PF01243;locus_tag=Cj0436
gi|15791399|ref|NC_002163.1|	EMBL	gene	405333	407168	.	+	.	ID=gene-Cj0437;Name=sdhA;gbkey=Gene;gene=sdhA;gene_biotype=protein_coding;locus_tag=Cj0437
gi|15791399|ref|NC_002163.1|	EMBL	CDS	405333	407168	.	+	0	ID=cds-CAL34587.1;Parent=gene-Cj0437;Dbxref=EnsemblGenomes-Gn:Cj0437,EnsemblGenomes-Tr:CAL34587,GOA:Q0PB73,InterPro:IPR003953,InterPro:IPR006311,InterPro:IPR014006,InterPro:IPR015939,InterPro:IPR019546,InterPro:IPR027477,UniProtKB/TrEMBL:Q0PB73,NCBI_GP:CAL34587.1;Name=CAL34587.1;Note=Original (2000) note: Cj0437%2C sdhA%2C probable succinate dehydrogenase flavoprotein subunit%2C len: 611 aa%3B similar to many e.g. DHSA_ECOLI succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) (588 aa)%2C fasta scores%3B opt: 1036 z-score: 1136.5 E(): 0%2C 37.3%25 identity in 569 aa overlap and to e.g. FRDA_WOLSU fumarate reductase flavoprotein subunit (656 aa)%2C fasta scores%3B opt: 862 z-score: 1211.2 E(): 0%2C 33.3%25 identity in 595 aa overlap. No Hp ortholog%2C but 32.3%25 identity to HP0192 fumarate reductase%2C flavoprotein subunit (frdA)%2C and 33.8%25 identity to C. jejuni frdA (Cj0409). Contains Pfam match to entry PF00890 FAD_binding_2%2C FAD binding domain%2C score 386.60%2CE-value 2.5e-112%3B~Updated (2006) note: Pfam domain PF02910 Fumarate reductase/succinate dehydrogenase identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Recent EC number update has changed fumarate designation to succinate. Putative not added to product function. Functional classification - Energy metabolism -Tricarboxylic acid cycle%3B~PMID:1556094%2C PMID:2987185;gbkey=CDS;gene=sdhA;inference=protein motif:Pfam:PF02910;locus_tag=Cj0437;product=succinate dehydrogenase flavoprotein subunit;protein_id=CAL34587.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	405771	406706	.	+	.	ID=id-Cj0437;Note=HMMPfam hit to PF00890%2C FAD binding domain%2C score 6.2e-115;gbkey=misc_feature;gene=sdhA;inference=protein motif:Pfam:PF00890;locus_tag=Cj0437
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	406785	407165	.	+	.	ID=id-Cj0437-2;Note=HMMPfam hit to PF02910%2C Fumarate reductase/succinate dehydroge%2C score 1.6e-35;gbkey=misc_feature;gene=sdhA;inference=protein motif:Pfam:PF02910;locus_tag=Cj0437
gi|15791399|ref|NC_002163.1|	EMBL	gene	407165	408130	.	+	.	ID=gene-Cj0438;Name=sdhB;gbkey=Gene;gene=sdhB;gene_biotype=protein_coding;locus_tag=Cj0438
gi|15791399|ref|NC_002163.1|	EMBL	CDS	407165	408130	.	+	0	ID=cds-CAL34588.1;Parent=gene-Cj0438;Dbxref=EnsemblGenomes-Gn:Cj0438,EnsemblGenomes-Tr:CAL34588,GOA:Q0PB72,InterPro:IPR001041,InterPro:IPR004489,InterPro:IPR006058,InterPro:IPR009051,InterPro:IPR012675,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR025192,UniProtKB/TrEMBL:Q0PB72,NCBI_GP:CAL34588.1;Name=CAL34588.1;Note=Original (2000) note: Cj0438%2C sdhB%2C possibleble succinate dehydrogenase iron-sulfur protein%2C len: 321 aa%3B similar to e.g. DHSB_MYCGR succinate dehydrogenase (ubiquinone) iron-sulfur protein (EC 1.3.5.1) (297 aa)%2Cfasta scores%3B opt: 352 z-score: 442.4 E(): 2.4e-17%2C 29.3%25 identity in 215 aa overlap. No Hp ortholog%2C but 28.1%25 identical to HP0191 fumarate reductase%2C iron-sulfur subunit (frdB). Contains PS00197 2Fe-2S ferredoxins%2Ciron-sulfur binding region signature%2C PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature%2C and Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains.%2C score 13.70%2CE-value 0.01%3B~Updated (2006) note: Pfam domain PF00111 2Fe-2S iron-sulfur cluster binding domain was identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Energy metabolism -Tricarboxylic acid cycle;gbkey=CDS;gene=sdhB;inference=protein motif:Prosite:PS00198;locus_tag=Cj0438;product=putative succinate dehydrogenase iron-sulfur protein;protein_id=CAL34588.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	407231	407395	.	+	.	ID=id-Cj0438;Note=HMMPfam hit to PF00111%2C 2Fe-2S iron-sulfur cluster binding domain%2C score 0.018;gbkey=misc_feature;gene=sdhB;inference=protein motif:Pfam:PF00111;locus_tag=Cj0438
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	407315	407341	.	+	.	ID=id-Cj0438-2;Note=PS00197 2Fe-2S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=sdhB;inference=protein motif:Prosite:PS00197;locus_tag=Cj0438
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	407774	407809	.	+	.	ID=id-Cj0438-3;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=sdhB;inference=protein motif:Prosite:PS00198;locus_tag=Cj0438
gi|15791399|ref|NC_002163.1|	EMBL	gene	408134	408991	.	+	.	ID=gene-Cj0439;Name=sdhC;gbkey=Gene;gene=sdhC;gene_biotype=protein_coding;locus_tag=Cj0439
gi|15791399|ref|NC_002163.1|	EMBL	CDS	408134	408991	.	+	0	ID=cds-CAL34589.1;Parent=gene-Cj0439;Dbxref=EnsemblGenomes-Gn:Cj0439,EnsemblGenomes-Tr:CAL34589,GOA:Q0PB71,InterPro:IPR004017,UniProtKB/TrEMBL:Q0PB71,NCBI_GP:CAL34589.1;Name=CAL34589.1;Note=Original (2000) note: Cj0439%2C sdhC%2C probable succinate dehydrogenase subunit C%2C len: 285 aa%3B similar to e.g. TR:P77945 (EMBL:Y09041) Sulfolobus acidocaldarius succinate dehydrogenase subunit C (EC 1.3.99.1) (290 aa)%2Cfasta scores%3B opt: 612 z-score: 739.6 E(): 0%2C 34.2%25 identity in 275 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains x2 PF02754 Cysteine-rich domain was identified within CDS. This domain is usually found in two copies per protein. It contains up to four conserved cysteines. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Energy metabolism -Tricarboxylic acid cycle;gbkey=CDS;gene=sdhC;inference=protein motif:Pfam:PF02754;locus_tag=Cj0439;product=putative succinate dehydrogenase subunit C;protein_id=CAL34589.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	408215	408394	.	+	.	ID=id-Cj0439;Note=HMMPfam hit to PF02754%2C Cysteine-rich domain%2C score 3.7e-06;gbkey=misc_feature;gene=sdhC;inference=protein motif:Pfam:PF02754;locus_tag=Cj0439
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	408659	408841	.	+	.	ID=id-Cj0439-2;Note=HMMPfam hit to PF02754%2C Cysteine-rich domain%2C score 6.4e-11;gbkey=misc_feature;gene=sdhC;inference=protein motif:Pfam:PF02754;locus_tag=Cj0439
gi|15791399|ref|NC_002163.1|	EMBL	gene	409015	409683	.	-	.	ID=gene-Cj0440c;Name=Cj0440c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0440c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	409015	409683	.	-	0	ID=cds-CAL34590.1;Parent=gene-Cj0440c;Dbxref=EnsemblGenomes-Gn:Cj0440c,EnsemblGenomes-Tr:CAL34590,GOA:Q0PB70,InterPro:IPR004305,InterPro:IPR016084,InterPro:IPR027574,UniProtKB/TrEMBL:Q0PB70,NCBI_GP:CAL34590.1;Name=CAL34590.1;Note=Original (2000) note: Cj0440c%2C probable transcriptional regulator%2C len: 222 aa%3B similar to many putative regulators and to TENA_BACSU transcriptional activator TENA (236 aa)%2C fasta scores%3B opt: 250 z-score: 275.4 E(): 4.8e-08%2C 28.8%25 identity in 215 aa overlap. 30.7%25 identity to HP1287%3B~Updated (2006) note: Pfam domain PF03070 TENA/THI-4 family was identified within CDS. Further support given to product function. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Broad regulatory functions;gbkey=CDS;inference=protein motif:Pfam:PF03070;locus_tag=Cj0440c;product=putative transcriptional regulator;protein_id=CAL34590.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	409030	409677	.	-	.	ID=id-Cj0440c;Note=HMMPfam hit to PF03070%2C TENA/THI-4 family%2C score 1.2e-52;gbkey=misc_feature;inference=protein motif:Pfam:PF03070;locus_tag=Cj0440c
gi|15791399|ref|NC_002163.1|	EMBL	gene	409793	410026	.	+	.	ID=gene-Cj0441;Name=acpP;gbkey=Gene;gene=acpP;gene_biotype=protein_coding;locus_tag=Cj0441
gi|15791399|ref|NC_002163.1|	EMBL	CDS	409793	410026	.	+	0	ID=cds-CAL34591.1;Parent=gene-Cj0441;Dbxref=EnsemblGenomes-Gn:Cj0441,EnsemblGenomes-Tr:CAL34591,GOA:Q9PI64,InterPro:IPR003231,InterPro:IPR006162,InterPro:IPR009081,NCBI_GP:CAL34591.1;Name=CAL34591.1;Note=Original (2000) note: Cj0441%2C acpP%2C probable acyl carrier protein%2C len: 77 aa%3B similar to many e.g. ACP_ECOLI acyl carrier protein (ACP) (77 aa)%2C fasta scores%3B opt: 232 z-score: 434.1 E(): 6.9e-17%2C 49.3%25 identity in 67 aa overlap. 63.2%25 identity to HP0559 and 54.9%25 identity to C-terminal half of HP0962. Contains PS00012 Phosphopantetheine attachment site and Pfam match to entry PF00550 pp-binding%2C Phosphopantetheine attachment site%2C score 53.80%2C E-value 2.9e-13%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Fatty acid biosynthesis%3B~PMID:1556094;gbkey=CDS;gene=acpP;inference=protein motif:Prosite:PS00012;locus_tag=Cj0441;product=acyl carrier protein;protein_id=CAL34591.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	409805	410008	.	+	.	ID=id-Cj0441;Note=HMMPfam hit to PF00550%2C Phosphopantetheine attachment site%2C score 3.2e-13;gbkey=misc_feature;gene=acpP;inference=protein motif:Pfam:PF00550;locus_tag=Cj0441
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	409883	409930	.	+	.	ID=id-Cj0441-2;Note=PS00012 Phosphopantetheine attachment site;gbkey=misc_feature;gene=acpP;inference=protein motif:Prosite:PS00012;locus_tag=Cj0441
gi|15791399|ref|NC_002163.1|	EMBL	gene	410053	411267	.	+	.	ID=gene-Cj0442;Name=fabF;gbkey=Gene;gene=fabF;gene_biotype=protein_coding;locus_tag=Cj0442
gi|15791399|ref|NC_002163.1|	EMBL	CDS	410053	411267	.	+	0	ID=cds-CAL34592.1;Parent=gene-Cj0442;Dbxref=EnsemblGenomes-Gn:Cj0442,EnsemblGenomes-Tr:CAL34592,GOA:Q0PB68,InterPro:IPR014030,InterPro:IPR014031,InterPro:IPR016038,InterPro:IPR016039,InterPro:IPR017568,UniProtKB/TrEMBL:Q0PB68,NCBI_GP:CAL34592.1;Name=CAL34592.1;Note=Original (2000) note: Cj0442%2C fabF%2C probable 3-oxoacyl-[acyl-carrier-protein] synthase%2C len: 404 aa%3B highly similar to many e.g. FABF_ECOLI 3-oxoacyl-[acyl-carrier-protein] synthase II (EC 2.3.1.41) (412 aa)%2C fasta scores%3B opt: 1380 z-score: 1676.1 E(): 0%2C52.0%25 identity in 410 aa overlap. 63.8%25 identity to HP0558. Contains Pfam match to entry PF00109 ketoacyl-synt%2C Beta-ketoacyl synthase%2C score 177.80%2CE-value 1.8e-49%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Fatty acid biosynthesis%3B~PMID:9013860;gbkey=CDS;gene=fabF;inference=protein motif:Pfam:PF00109;locus_tag=Cj0442;product=3-oxoacyl-[acyl-carrier-protein] synthase;protein_id=CAL34592.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	410056	410784	.	+	.	ID=id-Cj0442;Note=HMMPfam hit to PF00109%2C Beta-ketoacyl synthase%2CN-terminal do%2C score 1.1e-67;gbkey=misc_feature;gene=fabF;inference=protein motif:Pfam:PF00109;locus_tag=Cj0442
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	410806	411264	.	+	.	ID=id-Cj0442-2;Note=HMMPfam hit to PF02801%2C Beta-ketoacyl synthase%2CC-terminal do%2C score 8.4e-54;gbkey=misc_feature;gene=fabF;inference=protein motif:Pfam:PF02801;locus_tag=Cj0442
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	410818	410892	.	+	.	ID=id-Cj0442-3;Note=PS00107 Protein kinases ATP-binding region signature;gbkey=misc_feature;gene=fabF;inference=protein motif:Prosite:PS00107;locus_tag=Cj0442
gi|15791399|ref|NC_002163.1|	EMBL	gene	411269	412207	.	+	.	ID=gene-Cj0443;Name=accA;gbkey=Gene;gene=accA;gene_biotype=protein_coding;locus_tag=Cj0443
gi|15791399|ref|NC_002163.1|	EMBL	CDS	411269	412207	.	+	0	ID=cds-CAL34593.1;Parent=gene-Cj0443;Dbxref=EnsemblGenomes-Gn:Cj0443,EnsemblGenomes-Tr:CAL34593,GOA:Q9PI62,InterPro:IPR001095,InterPro:IPR011763,InterPro:IPR029045,NCBI_GP:CAL34593.1;Name=CAL34593.1;Note=Original (2000) note: Cj0443%2C accA%2C probable acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha%2C len: 312 aa%3B similar to many e.g. ACCA_ECOLI probable acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC 6.4.1.2) (318 aa)%2C fasta scores%3B opt: 977 z-score: 1341.2 E(): 0%2C 49.2%25 identity in 315 aa overlap. 62.2%25 identity to HP0557%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Fatty acid biosynthesis%3B~PMID:16325142;gbkey=CDS;gene=accA;locus_tag=Cj0443;product=acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha;protein_id=CAL34593.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	411275	411691	.	+	.	ID=id-Cj0443;Note=HMMPfam hit to PF03255%2C Acetyl co-enzyme A carboxylase carboxyltrans%2C score 3.3e-66;gbkey=misc_feature;gene=accA;inference=protein motif:Pfam:PF03255;locus_tag=Cj0443
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	412359	413473	.	+	.	ID=gene-Cj0444;Name=Cj0444;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0444;part=1/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	413477	414430	.	+	.	ID=gene-Cj0444;Name=Cj0444;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0444;part=2/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	412359	412910	.	+	0	ID=cds-Cj0444;Parent=gene-Cj0444;Note=Original (2000) note: Cj0444%2C probable tonB-denpendent outer membrane receptor pseudogene%2C len: 2072 bp%3B similar to parts of various tonB-denpendent outer membrane receptors e.g. IRGA_VIBCH iron-regulated outer membrane virulence protein (652 aa)%2C CIRA_ECOLI colicin I receptor precursor (663 aa)%2C and FEPA_ECOLI ferrienterobactin receptor precursor (746 aa). No Hp ortholog. Contains N-terminal signal sequence%2C PS01156 TonB-dependent receptor proteins signature 2 and Pfam match to entry PF00593 TonB_boxC%2C TonB dependant receptor C-terminal region%2C score 28.00%2C E-value 4.3e-05. There is at least one frameshift and one stop codon in this CDS%3B~Updated (2006) note: Pfam domain PF07715 TonB-dependent Receptor Plug Domain identified within CDS. Further support given to product function. Some characterisation work in various bacteria. However%2Cidentity scores were marginal. Thus%2C putative was added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other%3B~PMID:15632442;gbkey=CDS;inference=protein motif:Prosite:PS01156;locus_tag=Cj0444;product=pseudogene (putative TonB-denpendent outer membrane receptor);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	412907	413473	.	+	0	ID=cds-Cj0444;Parent=gene-Cj0444;Note=Original (2000) note: Cj0444%2C probable tonB-denpendent outer membrane receptor pseudogene%2C len: 2072 bp%3B similar to parts of various tonB-denpendent outer membrane receptors e.g. IRGA_VIBCH iron-regulated outer membrane virulence protein (652 aa)%2C CIRA_ECOLI colicin I receptor precursor (663 aa)%2C and FEPA_ECOLI ferrienterobactin receptor precursor (746 aa). No Hp ortholog. Contains N-terminal signal sequence%2C PS01156 TonB-dependent receptor proteins signature 2 and Pfam match to entry PF00593 TonB_boxC%2C TonB dependant receptor C-terminal region%2C score 28.00%2C E-value 4.3e-05. There is at least one frameshift and one stop codon in this CDS%3B~Updated (2006) note: Pfam domain PF07715 TonB-dependent Receptor Plug Domain identified within CDS. Further support given to product function. Some characterisation work in various bacteria. However%2Cidentity scores were marginal. Thus%2C putative was added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other%3B~PMID:15632442;gbkey=CDS;inference=protein motif:Prosite:PS01156;locus_tag=Cj0444;product=pseudogene (putative TonB-denpendent outer membrane receptor);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	413477	414430	.	+	0	ID=cds-Cj0444;Parent=gene-Cj0444;Note=Original (2000) note: Cj0444%2C probable tonB-denpendent outer membrane receptor pseudogene%2C len: 2072 bp%3B similar to parts of various tonB-denpendent outer membrane receptors e.g. IRGA_VIBCH iron-regulated outer membrane virulence protein (652 aa)%2C CIRA_ECOLI colicin I receptor precursor (663 aa)%2C and FEPA_ECOLI ferrienterobactin receptor precursor (746 aa). No Hp ortholog. Contains N-terminal signal sequence%2C PS01156 TonB-dependent receptor proteins signature 2 and Pfam match to entry PF00593 TonB_boxC%2C TonB dependant receptor C-terminal region%2C score 28.00%2C E-value 4.3e-05. There is at least one frameshift and one stop codon in this CDS%3B~Updated (2006) note: Pfam domain PF07715 TonB-dependent Receptor Plug Domain identified within CDS. Further support given to product function. Some characterisation work in various bacteria. However%2Cidentity scores were marginal. Thus%2C putative was added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other%3B~PMID:15632442;gbkey=CDS;inference=protein motif:Prosite:PS01156;locus_tag=Cj0444;product=pseudogene (putative TonB-denpendent outer membrane receptor);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	412473	412811	.	+	.	ID=id-Cj0444;Note=HMMPfam hit to PF07715%2C TonB-dependent Receptor Plug Domain%2C score 2e-27;gbkey=misc_feature;inference=protein motif:Pfam:PF07715;locus_tag=Cj0444
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	413606	414430	.	+	.	ID=id-Cj0444-2;Note=HMMPfam hit to PF00593%2C TonB dependent receptor%2Cscore 3.1e-33;gbkey=misc_feature;inference=protein motif:Pfam:PF00593;locus_tag=Cj0444
gi|15791399|ref|NC_002163.1|	EMBL	gene	414516	415112	.	+	.	ID=gene-Cj0447;Name=Cj0447;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0447
gi|15791399|ref|NC_002163.1|	EMBL	CDS	414516	415112	.	+	0	ID=cds-CAL34595.1;Parent=gene-Cj0447;Dbxref=EnsemblGenomes-Gn:Cj0447,EnsemblGenomes-Tr:CAL34595,GOA:Q0PB66,InterPro:IPR000086,InterPro:IPR004385,InterPro:IPR015797,UniProtKB/TrEMBL:Q0PB66,NCBI_GP:CAL34595.1;Name=CAL34595.1;Note=Original (2000) note: Cj0447%2C unknown%2C len: 198 aa%3B similar to a hypothetical protein from E. coli%3B YFFH_ECOLI (191 aa)%2C fasta scores%3B opt: 168 z-score: 344.6 E(): 6.7e-12%2C 31.1%25 identity in 122 aa overlap%3B and to part of a hypothetical protein from C. elegans TR:Q18745 (EMBL:Z70750) C50F4.11 (1092 aa)%2C fasta scores%3B opt: 133 z-score: 491.0 E(): 4.7e-20%2C 35.3%25 identity in 215 aa overlap. 45.7%25 identity to HP0507%3B~Updated (2006) note: Pfam domain PF00293 NUDIX was identified within CDS. The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family . The family can be divided into a number of subgroups%2C of which MutT anti-mutagenic activity represents only one type%3B most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose%2C GDP- mannose%2C TDP-glucose%2C NADH%2CUDP-sugars%2C dNTP and NTP). Product modified to more specific family member due to motif match. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF00293;locus_tag=Cj0447;product=putative NUDIX hydrolase family protein;protein_id=CAL34595.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	414627	415070	.	+	.	ID=id-Cj0447;Note=HMMPfam hit to PF00293%2C NUDIX domain%2C score 7.3e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00293;locus_tag=Cj0447
gi|15791399|ref|NC_002163.1|	EMBL	gene	415144	416241	.	-	.	ID=gene-Cj0448c;Name=Cj0448c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0448c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	415144	416241	.	-	0	ID=cds-CAL34596.1;Parent=gene-Cj0448c;Dbxref=EnsemblGenomes-Gn:Cj0448c,EnsemblGenomes-Tr:CAL34596,GOA:Q0PB65,InterPro:IPR004089,InterPro:IPR004090,InterPro:IPR025991,UniProtKB/TrEMBL:Q0PB65,NCBI_GP:CAL34596.1;Name=CAL34596.1;Note=Original (2000) note: Cj0448c%2C probable MCP-type signal transduction protein%2C len: 365 aa%3B similar to many proteins with MCP domains e.g. TR:Q56633 (EMBL:L25660) Vibrio cholerae acfB accessory colonization factor (626 aa)%2C fasta scores%3B opt: 364 z-score: 455.7 E(): 4.4e-18%2C29.9%25 identity in 278 aa overlap%2C and PILJ_PSEAE PILJ protein (682 aa)%2C fasta scores%3B opt: 314 z-score: 451.9 E(): 7.1e-18%2C 30.7%25 identity in 189 aa overlap. 31.9%25 identity to HP0599 (called hemolysin secretion protein precursor (hylB)%2C but previously sequenced as TR:P94847 H.pylori 48 kDa antigen (433 aa)%2C fasta scores%3B opt: 580 z-score: 833.7 E(): 0%2C 32.4%25 identity in 370 aa overlap). Contains Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2C score 122.40%2C E-value 1.7e-33%3B~Updated (2006) note: Prosite domain PS50111 CHEMOTAXIS_TRANSDUC_2%2C Bacterial chemotaxis sensory transducers domain profile identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Signal transduction;gbkey=CDS;inference=protein motif:Prosite:PS50111;locus_tag=Cj0448c;product=putative MCP-type signal transduction protein;protein_id=CAL34596.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	415426	416010	.	-	.	ID=id-Cj0448c;Note=HMMPfam hit to PF00015%2C Methyl-accepting chemotaxis protein (MCP) s%2C score 7.4e-12;gbkey=misc_feature;inference=protein motif:Pfam:PF00015;locus_tag=Cj0448c
gi|15791399|ref|NC_002163.1|	EMBL	gene	416251	416466	.	-	.	ID=gene-Cj0449c;Name=Cj0449c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0449c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	416251	416466	.	-	0	ID=cds-CAL34597.1;Parent=gene-Cj0449c;Dbxref=EnsemblGenomes-Gn:Cj0449c,EnsemblGenomes-Tr:CAL34597,InterPro:IPR007420,UniProtKB/TrEMBL:Q0PB64,NCBI_GP:CAL34597.1;Name=CAL34597.1;Note=Original (2000) note: Cj0449c%2C unknown%2C len: 71 aa%3B similar to E. coli hypothetical protein YDCH_ECOLI (55 aa)%2C fasta scores%3B opt: 112 z-score: 209.2 E(): 0.00023%2C42.6%25 identity in 47 aa overlap. 45.1%25 identity to HP1242%3B~Updated (2006) note: Pfam domain PF04325 Protein of unknown function (DUF465) was identified within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF04325;locus_tag=Cj0449c;product=conserved hypothetical protein Cj0449c;protein_id=CAL34597.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	416263	416412	.	-	.	ID=id-Cj0449c;Note=HMMPfam hit to PF04325%2C Protein of unknown function (DUF465)%2C score 9.2e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF04325;locus_tag=Cj0449c
gi|15791399|ref|NC_002163.1|	EMBL	gene	416651	416845	.	-	.	ID=gene-Cj0450c;Name=rpmB;gbkey=Gene;gene=rpmB;gene_biotype=protein_coding;locus_tag=Cj0450c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	416651	416845	.	-	0	ID=cds-CAL34598.1;Parent=gene-Cj0450c;Dbxref=EnsemblGenomes-Gn:Cj0450c,EnsemblGenomes-Tr:CAL34598,GOA:Q9PI58,InterPro:IPR001383,InterPro:IPR026569,NCBI_GP:CAL34598.1;Name=CAL34598.1;Note=Original (2000) note: Cj0450c%2C rpmB%2C 50S ribosomal protein L28%2C len: RL28_ECOLI 50S ribosomal protein L28 (77 aa)%2C fasta scores%3B opt: 191 z-score: 345.7 E(): 5.8e-12%2C49.2%25 identity in 61 aa overlap. 63.3%25 identity to HP0491. Contains Pfam match to entry PF00830 Ribosomal_L28%2CRibosomal L28 family%2C score 87.20%2C E-value 3.4e-22%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:332524;gbkey=CDS;gene=rpmB;inference=protein motif:Pfam:PF00830;locus_tag=Cj0450c;product=50S ribosomal protein L28;protein_id=CAL34598.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	416660	416839	.	-	.	ID=id-Cj0450c;Note=HMMPfam hit to PF00830%2C Ribosomal L28 family%2C score 1.3e-23;gbkey=misc_feature;gene=rpmB;inference=protein motif:Pfam:PF00830;locus_tag=Cj0450c
gi|15791399|ref|NC_002163.1|	EMBL	gene	416985	417632	.	+	.	ID=gene-Cj0451;Name=rep;gbkey=Gene;gene=rep;gene_biotype=protein_coding;locus_tag=Cj0451
gi|15791399|ref|NC_002163.1|	EMBL	CDS	416985	417632	.	+	0	ID=cds-CAL34599.1;Parent=gene-Cj0451;Dbxref=EnsemblGenomes-Gn:Cj0451,EnsemblGenomes-Tr:CAL34599,GOA:Q0PB62,InterPro:IPR000056,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR026019,UniProtKB/TrEMBL:Q0PB62,NCBI_GP:CAL34599.1;Name=CAL34599.1;Note=Original (2000) note: Cj0451%2C rep%2C probable ribulose-phosphate 3-epimerase%2C len: 215 aa%3B similar to many e.g. RPE_ECOLI ribulose-phosphate 3-epimerase (EC 5.1.3.1) (225 aa)%2C fasta scores%3B opt: 620 z-score: 1037.9 E(): 0%2C 43.5%25 identity in 214 aa overlap. 54.7%25 identity to HP1386. Contains PS01085 and PS01086 Ribulose-phosphate 3-epimerase family signature 1 and 2%2C and Pfam match to entry PF00834 Ribul_P_3_epim%2C Ribulose-phosphate 3 epimerase family%2C score 347.50%2C E-value 1.5e-100%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Central intermediary metabolism - General%3B~PMID:9729441;gbkey=CDS;gene=rep;inference=protein motif:Prosite:PS01086;locus_tag=Cj0451;product=ribulose-phosphate 3-epimerase;protein_id=CAL34599.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	416988	417590	.	+	.	ID=id-Cj0451;Note=HMMPfam hit to PF00834%2C Ribulose-phosphate 3 epimerase family%2C score 2.7e-102;gbkey=misc_feature;gene=rep;inference=protein motif:Pfam:PF00834;locus_tag=Cj0451
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	417072	417116	.	+	.	ID=id-Cj0451-2;Note=PS01085 Ribulose-phosphate 3-epimerase family signature 1;gbkey=misc_feature;gene=rep;inference=protein motif:Prosite:PS01085;locus_tag=Cj0451
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	417378	417446	.	+	.	ID=id-Cj0451-3;Note=PS01086 Ribulose-phosphate 3-epimerase family signature 2;gbkey=misc_feature;gene=rep;inference=protein motif:Prosite:PS01086;locus_tag=Cj0451
gi|15791399|ref|NC_002163.1|	EMBL	gene	417629	418390	.	+	.	ID=gene-Cj0452;Name=dnaQ;gbkey=Gene;gene=dnaQ;gene_biotype=protein_coding;locus_tag=Cj0452
gi|15791399|ref|NC_002163.1|	EMBL	CDS	417629	418390	.	+	0	ID=cds-CAL34600.1;Parent=gene-Cj0452;Dbxref=EnsemblGenomes-Gn:Cj0452,EnsemblGenomes-Tr:CAL34600,GOA:Q0PB61,InterPro:IPR006054,InterPro:IPR006055,InterPro:IPR012337,InterPro:IPR013520,UniProtKB/TrEMBL:Q0PB61,NCBI_GP:CAL34600.1;Name=CAL34600.1;Note=Original (2000) note: Cj0452%2C dnaQ%2C exonuclease%2Cpossibly dna polymerase III epsilon subunit%2C len: 253 aa%3B similar to part of e.g. DP3A_MYCPU DNA polymerase III%2Calpha chain (EC 2.7.7.7) (1435 aa)%2C fasta scores%3B opt: 220 z-score: 322.2 E(): 1.2e-10%2C 27.7%25 identity in 267 aa overlap%2C and DING_BACSU probable ATP-dependent helicase DING homolog (931 aa)%2C fasta scores%3B opt: 275 z-score: 312.6 E(): 4.1e-10%2C 35.3%25 identity in 170 aa overlap. Also some similarity to DP3E_ECOLI DNA polymerase III%2C epsilon chain (EC 2.7.7.7)%2C wublastn scores%3B E%3D 3.2e-05%2C 25%25 identity in 174 aa overlap. 41.5%25 identity to HP1387. Contains Pfam match to entry PF00929 Exonuclease%2CExonuclease%2C score 159.70%2C E-value 5.1e-44%3B~Updated (2006) note: Characterised within Escherichia coli with marginal identity score. The word 'possible' has been removed from product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:6359162%2C PMID:15090519;gbkey=CDS;gene=dnaQ;inference=protein motif:Pfam:PF00929;locus_tag=Cj0452;product=exonuclease%2C dna polymerase III epsilon subunit;protein_id=CAL34600.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	417842	418300	.	+	.	ID=id-Cj0452;Note=HMMPfam hit to PF00929%2C Exonuclease%2C score 1.1e-35;gbkey=misc_feature;gene=dnaQ;inference=protein motif:Pfam:PF00929;locus_tag=Cj0452
gi|15791399|ref|NC_002163.1|	EMBL	transcript	418412	418516	.	+	.	ID=rna-gi|15791399|ref|NC_002163.1|:418412..418516;Note=TPP riboswitch (THI element)%3B~Updated (2006) note: Running Rfam search revealed new non-coding RNA families within Campylobacter jejuni. Rfam RF00059%2C TPP riboswitch (THI element) was identified within CDS. Vitamin B(1) in its active form thiamin pyrophosphate (TPP) is an essential coenzyme that is synthesised by coupling of pyrimidine and thiazole moieties in bacteria. The previously detected thiamin-regulatory element%2C thi box (PMID:12376536) was extended%2C resulting in a new%2C highly conserved RNA secondary structure%2C the THI element. Analysis of operon structures identified a large number of new candidate thiamin-regulated genes%2C mostly transporters%2C in various prokaryotic organisms (PMID:1147090);gbkey=misc_RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	418412	418516	.	+	.	ID=exon-gi|15791399|ref|NC_002163.1|:418412..418516-1;Parent=rna-gi|15791399|ref|NC_002163.1|:418412..418516;Note=TPP riboswitch (THI element)%3B~Updated (2006) note: Running Rfam search revealed new non-coding RNA families within Campylobacter jejuni. Rfam RF00059%2C TPP riboswitch (THI element) was identified within CDS. Vitamin B(1) in its active form thiamin pyrophosphate (TPP) is an essential coenzyme that is synthesised by coupling of pyrimidine and thiazole moieties in bacteria. The previously detected thiamin-regulatory element%2C thi box (PMID:12376536) was extended%2C resulting in a new%2C highly conserved RNA secondary structure%2C the THI element. Analysis of operon structures identified a large number of new candidate thiamin-regulated genes%2C mostly transporters%2C in various prokaryotic organisms (PMID:1147090);gbkey=misc_RNA
gi|15791399|ref|NC_002163.1|	EMBL	gene	418573	419865	.	+	.	ID=gene-Cj0453;Name=thiC;gbkey=Gene;gene=thiC;gene_biotype=protein_coding;locus_tag=Cj0453
gi|15791399|ref|NC_002163.1|	EMBL	CDS	418573	419865	.	+	0	ID=cds-CAL34601.1;Parent=gene-Cj0453;Dbxref=EnsemblGenomes-Gn:Cj0453,EnsemblGenomes-Tr:CAL34601,GOA:Q9PI55,InterPro:IPR002817,NCBI_GP:CAL34601.1;Name=CAL34601.1;Note=Original (2000) note: Cj0453%2C thiC%2C probable thiamin biosynthesis protein%2C len: 430 aa%3B simlar to many e.g. THIC_ECOLI thiamin biosynthesis protein THIC (631 aa)%2C fasta scores%3B opt: 1116 z-score: 1641.2 E(): 0%2C 41.4%25 identity in 452 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01964 ThiC family was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Thiamine%3B~PMID:8432721;gbkey=CDS;gene=thiC;inference=protein motif:Pfam:PF01964;locus_tag=Cj0453;product=thiamin biosynthesis protein ThiC;protein_id=CAL34601.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	418579	419838	.	+	.	ID=id-Cj0453;Note=HMMPfam hit to PF01964%2C ThiC family%2C score 8.1e-216;gbkey=misc_feature;gene=thiC;inference=protein motif:Pfam:PF01964;locus_tag=Cj0453
gi|15791399|ref|NC_002163.1|	EMBL	gene	419857	420426	.	-	.	ID=gene-Cj0454c;Name=Cj0454c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0454c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	419857	420426	.	-	0	ID=cds-CAL34602.1;Parent=gene-Cj0454c;Dbxref=EnsemblGenomes-Gn:Cj0454c,EnsemblGenomes-Tr:CAL34602,UniProtKB/TrEMBL:Q0PB59,NCBI_GP:CAL34602.1;Name=CAL34602.1;Note=Original (2000) note: Cj0454c%2C possible membrane protein%2C len: 189 aa%3B no Hp match%3B~Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0 within CDS. Literature search identified paper linking product function to motility. Functional classification - Membranes%2Clipoproteins and porins%3B~PMID:15066034;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0454c;product=putative membrane protein;protein_id=CAL34602.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	420274	420342	.	-	.	ID=id-Cj0454c;Note=1 probable transmembrane helix predicted for Cj0454c by TMHMM2.0 at aa 29-51;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0454c
gi|15791399|ref|NC_002163.1|	EMBL	gene	420548	420892	.	-	.	ID=gene-Cj0455c;Name=Cj0455c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0455c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	420548	420892	.	-	0	ID=cds-CAL34603.1;Parent=gene-Cj0455c;Dbxref=EnsemblGenomes-Gn:Cj0455c,EnsemblGenomes-Tr:CAL34603,UniProtKB/TrEMBL:Q0PB58,NCBI_GP:CAL34603.1;Name=CAL34603.1;Note=Original (2000) note: Cj0455c%2C possible membrane protein%2C len: 114 aa%3B no Hp match%3B~Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0 within CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0455c;product=putative membrane protein;protein_id=CAL34603.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	420776	420835	.	-	.	ID=id-Cj0455c;Note=1 probable transmembrane helix predicted for Cj0455c by TMHMM2.0 at aa 20-39;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0455c
gi|15791399|ref|NC_002163.1|	EMBL	gene	420889	421848	.	-	.	ID=gene-Cj0456c;Name=Cj0456c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0456c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	420889	421848	.	-	0	ID=cds-CAL34604.1;Parent=gene-Cj0456c;Dbxref=EnsemblGenomes-Gn:Cj0456c,EnsemblGenomes-Tr:CAL34604,UniProtKB/TrEMBL:Q0PB57,NCBI_GP:CAL34604.1;Name=CAL34604.1;Note=Original (2000) note: Cj0456c%2C unknown%2C len: 319 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0456c;product=hypothetical protein Cj0456c;protein_id=CAL34604.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	421850	422479	.	-	.	ID=gene-Cj0457c;Name=Cj0457c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0457c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	421850	422479	.	-	0	ID=cds-CAL34605.1;Parent=gene-Cj0457c;Dbxref=EnsemblGenomes-Gn:Cj0457c,EnsemblGenomes-Tr:CAL34605,InterPro:IPR007172,UniProtKB/TrEMBL:Q0PB56,NCBI_GP:CAL34605.1;Name=CAL34605.1;Note=Original (2000) note: Cj0457c%2C probable lipoprotein%2C len: 209 aa%3B similar to hypothetical protein fromRICKETTSIA PROWAZEKII TR:E1342403 (EMBL:AJ235270) RP090 (218 aa)%2C fasta scores%3B opt: 372 z-score: 531.3 E(): 2.7e-22%2C 33.0%25 identity in 212 aa overlap. 35.9%25 identity in 153 aa overlap to HP0270. Contains N-terminal signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domain PF04028 Domain of unknown function (DUF374) identified within CDS. One probable transmembrane helices predicted by TMHMM2.0 within CDS. Further support given to product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0457c;product=putative lipoprotein;protein_id=CAL34605.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	422306	422365	.	-	.	ID=id-Cj0457c;Note=2 probable transmembrane helices predicted for Cj0457c by TMHMM2.0 at aa 7-24 and 39-58;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0457c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	422408	422461	.	-	.	ID=id-Cj0457c;Note=2 probable transmembrane helices predicted for Cj0457c by TMHMM2.0 at aa 7-24 and 39-58;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0457c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	422096	422332	.	-	.	ID=id-Cj0457c-2;Note=HMMPfam hit to PF04028%2C Domain of unknown function (DUF374)%2C score 1.7e-50;gbkey=misc_feature;inference=protein motif:Pfam:PF04028;locus_tag=Cj0457c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	422405	422437	.	-	.	ID=id-Cj0457c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0457c
gi|15791399|ref|NC_002163.1|	EMBL	gene	422463	423764	.	-	.	ID=gene-Cj0458c;Name=miaB;gbkey=Gene;gene=miaB;gene_biotype=protein_coding;locus_tag=Cj0458c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	422463	423764	.	-	0	ID=cds-CAL34606.1;Parent=gene-Cj0458c;Dbxref=EnsemblGenomes-Gn:Cj0458c,EnsemblGenomes-Tr:CAL34606,GOA:Q0PB55,InterPro:IPR002792,InterPro:IPR005839,InterPro:IPR006463,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013848,InterPro:IPR020612,InterPro:IPR023404,InterPro:IPR023970,NCBI_GP:CAL34606.1;Name=CAL34606.1;Note=Original (2000) note: Cj0458c%2C unknown%2C len: 433 aa%3B similar to many hypothetical proteins e.g. YLEA_ECOLI (474 aa)%2C fasta scores%3B opt: 974 z-score: 1539.3 E(): 0 37.5%25 identity in 440 aa overlap. 59.5%25 identity to HP0269. Also similar to Cj1006c (28.6%25 identity in 391 aa overlap) and Cj1454c (26.7%25 identity in 371 aa overlap). Contains PS01278 Uncharacterized protein family UPF0004 signature Pfam match to entry PF00919 UPF0004%2CUncharacterized protein family UPF0004%2C score 648.00%2CE-value 1.3e-203%3B~Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily identified within CDS. Prosite domains PS50926 TRAM%2C Deoxyribonuclease/rho motif-related TRAM%2CPS01278 UPF0004%2C Protein of unknown function and PS00133 CARBOXYPEPT_ZN_2%2C Peptidase M14%2C carboxypeptidase A also identified. Characterised within Salmonella typhimurium with acceptable identity score%2C however%2C partial sequence alingment was achieved. Product function modified to new family member. Putative kept within product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:10572129;gbkey=CDS;gene=miaB;inference=protein motif:Prosite:PS50926;locus_tag=Cj0458c;product=putative tRNA 2-methylthioadenosine synthase;protein_id=CAL34606.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	422466	422648	.	-	.	ID=id-Cj0458c;Note=HMMPfam hit to PF01938%2C TRAM domain%2C score 2.9e-10;gbkey=misc_feature;gene=miaB;inference=protein motif:Pfam:PF01938;locus_tag=Cj0458c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	422805	423332	.	-	.	ID=id-Cj0458c-2;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 3.8e-32;gbkey=misc_feature;gene=miaB;inference=protein motif:Pfam:PF04055;locus_tag=Cj0458c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	423249	423281	.	-	.	ID=id-Cj0458c-3;Note=PS00133 Zinc carboxypeptidases%2C zinc-binding region 2 signature;gbkey=misc_feature;gene=miaB;inference=protein motif:Prosite:PS00133;locus_tag=Cj0458c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	423270	423332	.	-	.	ID=id-Cj0458c-4;Note=PS01278 Uncharacterized protein family UPF0004 signature;gbkey=misc_feature;gene=miaB;inference=protein motif:Prosite:PS01278;locus_tag=Cj0458c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	423456	423752	.	-	.	ID=id-Cj0458c-5;Note=HMMPfam hit to PF00919%2C Uncharacterized protein family UPF0004%2C score 1.6e-40;gbkey=misc_feature;gene=miaB;inference=protein motif:Pfam:PF00919;locus_tag=Cj0458c
gi|15791399|ref|NC_002163.1|	EMBL	gene	423761	424027	.	-	.	ID=gene-Cj0459c;Name=Cj0459c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0459c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	423761	424027	.	-	0	ID=cds-CAL34607.1;Parent=gene-Cj0459c;Dbxref=EnsemblGenomes-Gn:Cj0459c,EnsemblGenomes-Tr:CAL34607,UniProtKB/TrEMBL:Q0PB54,NCBI_GP:CAL34607.1;Name=CAL34607.1;Note=Original (2000) note: Cj0459c%2C unknown%2C len: 88 aa%3B 32.5%25 identical to HP0268. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0459c;product=hypothetical protein Cj0459c;protein_id=CAL34607.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	424131	425219	.	+	.	ID=gene-Cj0460;Name=nusA;gbkey=Gene;gene=nusA;gene_biotype=protein_coding;locus_tag=Cj0460
gi|15791399|ref|NC_002163.1|	EMBL	CDS	424131	425219	.	+	0	ID=cds-CAL34608.1;Parent=gene-Cj0460;Dbxref=EnsemblGenomes-Gn:Cj0460,EnsemblGenomes-Tr:CAL34608,GOA:Q0PB53,InterPro:IPR003029,InterPro:IPR009019,InterPro:IPR010213,InterPro:IPR012340,InterPro:IPR013735,InterPro:IPR015946,InterPro:IPR022967,InterPro:IPR025249,InterPro:IPR028620,UniProtKB/TrEMBL:Q0PB53,NCBI_GP:CAL34608.1;Name=CAL34608.1;Note=Original (2000) note: Cj0460%2C nusA%2C probable transcription termination factor%2C len: 362 aa%3B similar to many e.g. NUSA_BACSU N utilization substance protein A homolog (371 aa)%2C fasta scores%3B opt: 555 z-score: 698.3 E(): 1.3e-31%2C 30.0%25 identity in 367 aa overlap. 45.4%25 identity to HP1514%3B~Updated (2006) note: Prosite PS50126 S1%2C RNA binding S1 was identified within CDS. S1 is a binding domain found in NusA (N utilisation substance protein A) protein. NusA binds to RNA polymerase alpha subunit and promotes termination at certain RNA hairpin structures. Characterised within Bacillus subtilis with marginal identity score. Putative not added to product function. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:8491709%2C PMID:8535155;gbkey=CDS;gene=nusA;inference=protein motif:Prosite:PS50126;locus_tag=Cj0460;product=transcription termination factor;protein_id=CAL34608.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	425235	426422	.	-	.	ID=gene-Cj0461c;Name=Cj0461c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0461c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	425235	426422	.	-	0	ID=cds-CAL34609.1;Parent=gene-Cj0461c;Dbxref=EnsemblGenomes-Gn:Cj0461c,EnsemblGenomes-Tr:CAL34609,GOA:Q0PB52,InterPro:IPR011701,InterPro:IPR016196,UniProtKB/TrEMBL:Q0PB52,NCBI_GP:CAL34609.1;Name=CAL34609.1;Note=Original (2000) note: Cj0461c%2C probable integral membrane protein%2C len: 395 aa%3B some similarity to a hypothetical protein from B. subtilis TR:O31400 (EMBL:AJ222587) YKUC (430 aa)%2C fasta scores%3B opt: 172 z-score: 369.7 E(): 2.7e-13%2C 23.8%25 identity in 407 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF07690 Major Facilitator Superfamily (MFS) and PF04332 Protein of unknown function (DUF475) were identified within CDS. Twelve probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;product=putative MFS (Major Facilitator Superfamily) transport protein;protein_id=CAL34609.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	425250	425309	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	425319	425387	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	425448	425516	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	425526	425579	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	425613	425681	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	425724	425792	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	425850	425918	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	425928	425996	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	426057	426116	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	426126	426194	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	426213	426281	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	426294	426362	.	-	.	ID=id-Cj0461c;Note=12 probable transmembrane helices predicted for Cj0461c by TMHMM2.0 at aa 21-43%2C 48-70%2C 77-99%2C 103-122%2C143-165%2C 169-191%2C 211-233%2C 248-270%2C 282-299%2C 303-325%2C346-368 and 372-391;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0461c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	425238	426257	.	-	.	ID=id-Cj0461c-2;Note=HMMPfam hit to PF04332%2C Protein of unknown function (DUF475)%2C score 3e-192;gbkey=misc_feature;inference=protein motif:Pfam:PF04332;locus_tag=Cj0461c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	425331	426377	.	-	.	ID=id-Cj0461c-3;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 1.2e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj0461c
gi|15791399|ref|NC_002163.1|	EMBL	gene	426496	427542	.	+	.	ID=gene-Cj0462;Name=Cj0462;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0462
gi|15791399|ref|NC_002163.1|	EMBL	CDS	426496	427542	.	+	0	ID=cds-CAL34610.1;Parent=gene-Cj0462;Dbxref=EnsemblGenomes-Gn:Cj0462,EnsemblGenomes-Tr:CAL34610,GOA:Q0PB51,InterPro:IPR000160,InterPro:IPR005244,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR020050,InterPro:IPR022431,UniProtKB/TrEMBL:Q0PB51,NCBI_GP:CAL34610.1;Name=CAL34610.1;Note=Original (2000) note: Cj0462%2C unknown%2C len: 348 aa%3B similar to many hypothetical proteins e.g. TR:O66979 (EMBL:AE000707) Aquifex aeolicus AQ_789 (361 aa)%2C fasta scores%3B opt: 1202 z-score: 1804.1 E(): 0%2C 51.4%25 identity in 348 aa overlap. 66.2%25 identity to HP0656. Also similar to Cj1368 (35.5%25 identity in 349 aa overlap)%3B~Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily identified within CDS. Radical SAM proteins catalyze diverse reactions%2C including unusual methylations%2C isomerization%2C sulphur insertion%2C ring formation%2C anaerobic oxidation and protein radical formation. Prosite PS50887 GGDEF domain identified within CDS. This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain%2C such as a phosphorylation receiver or oxygen sensing domain. Product modified to more specific family member due to motif match. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS50887;locus_tag=Cj0462;product=putative radical SAM domain protein;protein_id=CAL34610.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	426631	427155	.	+	.	ID=id-Cj0462;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 9.3e-25;gbkey=misc_feature;inference=protein motif:Pfam:PF04055;locus_tag=Cj0462
gi|15791399|ref|NC_002163.1|	EMBL	gene	427542	428762	.	+	.	ID=gene-Cj0463;Name=Cj0463;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0463
gi|15791399|ref|NC_002163.1|	EMBL	CDS	427542	428762	.	+	0	ID=cds-CAL34611.1;Parent=gene-Cj0463;Dbxref=EnsemblGenomes-Gn:Cj0463,EnsemblGenomes-Tr:CAL34611,GOA:Q0PB50,InterPro:IPR007863,InterPro:IPR011237,InterPro:IPR011249,UniProtKB/TrEMBL:Q0PB50,NCBI_GP:CAL34611.1;Name=CAL34611.1;Note=Original (2000) note: Cj0463%2C zinc protease-like protein%2C len: 406 aa%3B some similarity to members of the peptidase M16 (insulinase) family e.g. Y4WB_RHISN hypothetical zinc protease-like protein Y4WB (447 aa)%2Cfasta scores%3B opt: 375 z-score: 306.4 E(): 9.1e-10%2C 22.7%25 identity in 396 aa overlap. 39.3%25 identity to HP0657%3B~Updated (2006) note: Pfam domain PF05193 Peptidase M16 inactive domain identified within CDS. No specific characterisation has been carried out yet. Product function left unchanged. Functional classification -Degradation of macromolecules - Proteins%2C peptides and glycopeptides;gbkey=CDS;inference=protein motif:Pfam:PF05193;locus_tag=Cj0463;product=zinc protease-like protein;protein_id=CAL34611.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	428019	428555	.	+	.	ID=id-Cj0463;Note=HMMPfam hit to PF05193%2C Peptidase M16 inactive domain%2C score 1.5e-34;gbkey=misc_feature;inference=protein motif:Pfam:PF05193;locus_tag=Cj0463
gi|15791399|ref|NC_002163.1|	EMBL	gene	428752	430575	.	+	.	ID=gene-Cj0464;Name=recG;gbkey=Gene;gene=recG;gene_biotype=protein_coding;locus_tag=Cj0464
gi|15791399|ref|NC_002163.1|	EMBL	CDS	428752	430575	.	+	0	ID=cds-CAL34612.1;Parent=gene-Cj0464;Dbxref=EnsemblGenomes-Gn:Cj0464,EnsemblGenomes-Tr:CAL34612,GOA:Q0PB49,InterPro:IPR001650,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PB49,NCBI_GP:CAL34612.1;Name=CAL34612.1;Note=Original (2000) note: Cj0464%2C recG%2C probable ATP-dependent DNA helicase%2C len: 607 aa%3B similarto many e.g. RECG_ECOLI ATP-dependent DNA helicase RECG (EC 3.6.1.-) (693 aa)%2C fasta scores%3B opt: 491 z-score: 773.3 E(): 0%2C34.6%25 identity in 431 aa overlap. 42.9%25 identity to HP1523. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00271 helicase_C%2CHelicases conserved C-terminal domain%2C score 53.20%2CE-value 5.5e-12%3B~Updated (2006) note: Pfam domain PF04851 Type III restriction enzyme%2C res subunit and PF00270 DEAD/DEAH box helicase identified within CDS. Prosite PS50136 HELICASE%2CDEAD/DEAH box helicase identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:7774596;gbkey=CDS;gene=recG;inference=protein motif:Prosite:PS50136;locus_tag=Cj0464;product=ATP-dependent DNA helicase;protein_id=CAL34612.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	429421	429888	.	+	.	ID=id-Cj0464;Note=HMMPfam hit to PF04851%2C Type III restriction enzyme%2C res subunit%2C score 4.1e-06;gbkey=misc_feature;gene=recG;inference=protein motif:Pfam:PF04851;locus_tag=Cj0464
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	429427	429903	.	+	.	ID=id-Cj0464-2;Note=HMMPfam hit to PF00270%2C DEAD/DEAH box helicase%2Cscore 6.9e-25;gbkey=misc_feature;gene=recG;inference=protein motif:Pfam:PF00270;locus_tag=Cj0464
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	429508	429531	.	+	.	ID=id-Cj0464-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=recG;inference=protein motif:Prosite:PS00017;locus_tag=Cj0464
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	430117	430335	.	+	.	ID=id-Cj0464-4;Note=HMMPfam hit to PF00271%2C Helicase conserved C-terminal domain%2C score 2.2e-13;gbkey=misc_feature;gene=recG;inference=protein motif:Pfam:PF00271;locus_tag=Cj0464
gi|15791399|ref|NC_002163.1|	EMBL	gene	430572	430955	.	-	.	ID=gene-Cj0465c;Name=ctb;gbkey=Gene;gene=ctb;gene_biotype=protein_coding;locus_tag=Cj0465c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	430572	430955	.	-	0	ID=cds-CAL34613.1;Parent=gene-Cj0465c;Dbxref=EnsemblGenomes-Gn:Cj0465c,EnsemblGenomes-Tr:CAL34613,GOA:Q0PB48,InterPro:IPR001486,InterPro:IPR009050,InterPro:IPR012292,PDB:2IG3,NCBI_GP:CAL34613.1;Name=CAL34613.1;Note=Original (2000) note: Cj0465c%2C unknown%2C len: 127 aa%3B identical to C. jejuni hypothetical protein TR:O52917 (EMBL:CJAJ2417) clone 1g9 ORF1 (fragment) (74 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF01152 Bacterial-like globin identified within CDS. This family of heme binding proteins are found mainly in bacteria. Characterised within Campylobacter jejuni. Ctb protein is shown to be involved in moderating oxygen flux within Campylobacter jejuni. NssR (Nitrosative stress sensing Regulator - Cj0466) controls the expression of a nitrosative stress-responsive regulon in Campylobacter jejuni which includes ctb (Cj0465c) and cgb (Cj1586). Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:16681372%2C PMID:16339953%2C PMID:16045618%2CPMID:15292134;gbkey=CDS;gene=ctb;inference=protein motif:Pfam:PF01152;locus_tag=Cj0465c;product=group III truncated haemoglobin;protein_id=CAL34613.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	431050	431646	.	+	.	ID=gene-Cj0466;Name=nssR;gbkey=Gene;gene=nssR;gene_biotype=protein_coding;locus_tag=Cj0466
gi|15791399|ref|NC_002163.1|	EMBL	CDS	431050	431646	.	+	0	ID=cds-CAL34614.1;Parent=gene-Cj0466;Dbxref=EnsemblGenomes-Gn:Cj0466,EnsemblGenomes-Tr:CAL34614,GOA:Q0PB47,InterPro:IPR000595,InterPro:IPR011991,InterPro:IPR014710,InterPro:IPR018490,UniProtKB/TrEMBL:Q0PB47,NCBI_GP:CAL34614.1;Name=CAL34614.1;Note=Original (2000) note: Cj0466%2C probable transcriptional regulator%2C len: 198 aa%3B similar to members of the crp/fnr family e.g. CRP_SALTY catabolite gene activator (210 aa)%2C fasta scores%3B opt: 191 z-score: 236.7 E(): 6.9e-06%2C 24.1%25 identity in 195 aa overlap%2C and FNR_BACSU anaerobic regulatory protein (238 aa)%2C fasta scores%3B opt: 182 z-score: 215.5 E(): 0.0001%2C 23.0%25 identity in 209 aa overlap. No Hp match. Contains helix-turn-helix motif at aa 150-171 (Score 1452%2C +4.13 SD)%3B~Updated (2006) note: Pfam domain PF00027 Cyclic nucleotide-binding domain identified within CDS. Prosite PS50042 CNMP_BINDING_3%2C Cyclic nucleotide-binding identified within CDS. Characterised within Campylobacter jejuni. NssR (Nitrosative stress sensing Regulator) controls the expression of a nitrosative stress-responsive regulon in Campylobacter jejuni which includes ctb (Cj0465c) and cgb (Cj1586). Putative not added to product function. Functional classification - Broad regulatory functions%3B~PMID:16045618%2C PMID:15292134%2C PMID:16339953%2CPMID:16681372;gbkey=CDS;gene=nssR;inference=protein motif:Prosite:PS50042;locus_tag=Cj0466;product=transcriptional regulator;protein_id=CAL34614.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	431080	431361	.	+	.	ID=id-Cj0466;Note=HMMPfam hit to PF00027%2C Cyclic nucleotide-binding domain%2C score 2.2e-15;gbkey=misc_feature;gene=nssR;inference=protein motif:Pfam:PF00027;locus_tag=Cj0466
gi|15791399|ref|NC_002163.1|	EMBL	gene	431662	432363	.	+	.	ID=gene-Cj0467;Name=Cj0467;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0467
gi|15791399|ref|NC_002163.1|	EMBL	CDS	431662	432363	.	+	0	ID=cds-CAL34615.1;Parent=gene-Cj0467;Dbxref=EnsemblGenomes-Gn:Cj0467,EnsemblGenomes-Tr:CAL34615,GOA:Q0PB46,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q0PB46,NCBI_GP:CAL34615.1;Name=CAL34615.1;Note=Original (2000) note: Cj0467%2C probable amino-acid ABC transporter integral membrane protein%2C len: 233 aa%3B similar to many e.g. GLNP_ECOLI glutamine transport system permease protein (219 aa)%2C fasta scores%3B opt: 237 z-score: 468.8 E(): 8.1e-19%2C 32.6%25 identity in 233 aa overlap. 45.3%25 identity to HP1169. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign. and Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 50.10%2C E-value 4.9e-11%3B~Updated (2006) note: Literature search identified paper within Campylobacter jejuni linking Cj0467%2C Cj0468 and Cj0469 as putative cysteine transporters. Three probable transmembrane helices predicted by TMHMM2.0. Putative not added to product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:15948956;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0467;product=amino-acid ABC transporter integral membrane protein;protein_id=CAL34615.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	431704	431772	.	+	.	ID=id-Cj0467;Note=3 probable transmembrane helices predicted for Cj0467 by TMHMM2.0 at aa 15-37%2C 151-173 and 204-226;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0467;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	432112	432180	.	+	.	ID=id-Cj0467;Note=3 probable transmembrane helices predicted for Cj0467 by TMHMM2.0 at aa 15-37%2C 151-173 and 204-226;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0467;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	432271	432339	.	+	.	ID=id-Cj0467;Note=3 probable transmembrane helices predicted for Cj0467 by TMHMM2.0 at aa 15-37%2C 151-173 and 204-226;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0467;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	431710	432357	.	+	.	ID=id-Cj0467-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 1.8e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF00528;locus_tag=Cj0467
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	432040	432126	.	+	.	ID=id-Cj0467-3;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign;gbkey=misc_feature;inference=protein motif:Prosite:PS00402;locus_tag=Cj0467
gi|15791399|ref|NC_002163.1|	EMBL	gene	432356	433012	.	+	.	ID=gene-Cj0468;Name=Cj0468;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0468
gi|15791399|ref|NC_002163.1|	EMBL	CDS	432356	433012	.	+	0	ID=cds-CAL34616.1;Parent=gene-Cj0468;Dbxref=EnsemblGenomes-Gn:Cj0468,EnsemblGenomes-Tr:CAL34616,GOA:Q0PB45,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q0PB45,NCBI_GP:CAL34616.1;Name=CAL34616.1;Note=Original (2000) note: Cj0468%2C probable amino-acid ABC transporter integral membrane protein%2C len: 218 aa%3B similar to many e.g. GLTJ_ECOLI glutamate/aspartate transport system permease (246 aa)%2C fasta scores%3B opt: 194 z-score: 425.1 E(): 2.2e-16%2C 25.7%25 identity in 222 aa overlap. 49.3%25 identity to HP1170. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign. and Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%2C score 52.80%2C E-value 7.6e-12%3B~Updated (2006) note: Literature search identified paper within Campylobacter jejuni linking Cj0467%2C Cj0468 and Cj0469 as putative cysteine transporters. Five probable transmembrane helices predicted by TMHMM2.0. Putative not added to product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:15948956;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0468;product=amino-acid ABC transporter integral membrane protein;protein_id=CAL34616.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	432404	433003	.	+	.	ID=id-Cj0468;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 8.5e-13;gbkey=misc_feature;inference=protein motif:Pfam:PF00528;locus_tag=Cj0468
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	432413	432481	.	+	.	ID=id-Cj0468-2;Note=5 probable transmembrane helices predicted for Cj0468 by TMHMM2.0 at aa 20-42%2C 55-77%2C 87-109%2C 151-171 and 186-208;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0468;part=1/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	432518	432586	.	+	.	ID=id-Cj0468-2;Note=5 probable transmembrane helices predicted for Cj0468 by TMHMM2.0 at aa 20-42%2C 55-77%2C 87-109%2C 151-171 and 186-208;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0468;part=2/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	432614	432682	.	+	.	ID=id-Cj0468-2;Note=5 probable transmembrane helices predicted for Cj0468 by TMHMM2.0 at aa 20-42%2C 55-77%2C 87-109%2C 151-171 and 186-208;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0468;part=3/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	432806	432868	.	+	.	ID=id-Cj0468-2;Note=5 probable transmembrane helices predicted for Cj0468 by TMHMM2.0 at aa 20-42%2C 55-77%2C 87-109%2C 151-171 and 186-208;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0468;part=4/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	432911	432979	.	+	.	ID=id-Cj0468-2;Note=5 probable transmembrane helices predicted for Cj0468 by TMHMM2.0 at aa 20-42%2C 55-77%2C 87-109%2C 151-171 and 186-208;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0468;part=5/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	432683	432769	.	+	.	ID=id-Cj0468-3;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign;gbkey=misc_feature;inference=protein motif:Prosite:PS00402;locus_tag=Cj0468
gi|15791399|ref|NC_002163.1|	EMBL	gene	433014	433775	.	+	.	ID=gene-Cj0469;Name=Cj0469;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0469
gi|15791399|ref|NC_002163.1|	EMBL	CDS	433014	433775	.	+	0	ID=cds-CAL34617.1;Parent=gene-Cj0469;Dbxref=EnsemblGenomes-Gn:Cj0469,EnsemblGenomes-Tr:CAL34617,GOA:Q0PB44,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PB44,NCBI_GP:CAL34617.1;Name=CAL34617.1;Note=Original (2000) note: Cj0469%2C probable amino-acid ABC transporter ATP-binding protein%2C len: 2t53 aa%3B highly similar to many e.g. GLNQ_BACST glutamine transport ATP-binding protein (242 aa)%2C fasta scores%3B opt: 902 z-score: 1279.6 E(): 0%2C 55.4%25 identity in 242 aa overlap. 61.4%25 identity to HP1171. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%2C score 227.80%2C E-value 1.6e-64%3B~Updated (2006) note: Literature search identified paper within Campylobacter jejuni linking Cj0467%2C Cj0468 and Cj0469 as putative cysteine transporters. Putative not added to product function. Functional classification -Transport/binding proteins - Amino acids and amines%3B~PMID:15948956;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj0469;product=amino-acid ABC transporter ATP-binding protein;protein_id=CAL34617.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	433098	433655	.	+	.	ID=id-Cj0469;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 1.7e-65;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj0469
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	433119	433142	.	+	.	ID=id-Cj0469-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0469
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	433428	433472	.	+	.	ID=id-Cj0469-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj0469
gi|15791399|ref|NC_002163.1|	EMBL	gene	433867	433942	.	+	.	ID=gene-tRNA-Thr;Name=tRNA-Thr;gbkey=Gene;gene=tRNA-Thr;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	433867	433942	.	+	.	ID=rna-tRNA-Thr;Parent=gene-tRNA-Thr;Note=tRNA Thr anticodon TGT%2C Cove score 96.83;gbkey=tRNA;gene=tRNA-Thr;product=tRNA-Thr
gi|15791399|ref|NC_002163.1|	EMBL	exon	433867	433942	.	+	.	ID=exon-tRNA-Thr-1;Parent=rna-tRNA-Thr;Note=tRNA Thr anticodon TGT%2C Cove score 96.83;gbkey=tRNA;gene=tRNA-Thr;product=tRNA-Thr
gi|15791399|ref|NC_002163.1|	EMBL	gene	433992	434077	.	+	.	ID=gene-tRNA-Tyr;Name=tRNA-Tyr;gbkey=Gene;gene=tRNA-Tyr;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	433992	434077	.	+	.	ID=rna-tRNA-Tyr;Parent=gene-tRNA-Tyr;Note=tRNA Tyr anticodon GTA%2C Cove score 64.32;gbkey=tRNA;gene=tRNA-Tyr;product=tRNA-Tyr
gi|15791399|ref|NC_002163.1|	EMBL	exon	433992	434077	.	+	.	ID=exon-tRNA-Tyr-1;Parent=rna-tRNA-Tyr;Note=tRNA Tyr anticodon GTA%2C Cove score 64.32;gbkey=tRNA;gene=tRNA-Tyr;product=tRNA-Tyr
gi|15791399|ref|NC_002163.1|	EMBL	gene	434084	434160	.	+	.	ID=gene-tRNA-Gly;Name=tRNA-Gly;gbkey=Gene;gene=tRNA-Gly;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	434084	434160	.	+	.	ID=rna-tRNA-Gly;Parent=gene-tRNA-Gly;Note=tRNA Gly anticodon TCC%2C Cove score 96.94;gbkey=tRNA;gene=tRNA-Gly;product=tRNA-Gly
gi|15791399|ref|NC_002163.1|	EMBL	exon	434084	434160	.	+	.	ID=exon-tRNA-Gly-1;Parent=rna-tRNA-Gly;Note=tRNA Gly anticodon TCC%2C Cove score 96.94;gbkey=tRNA;gene=tRNA-Gly;product=tRNA-Gly
gi|15791399|ref|NC_002163.1|	EMBL	gene	434265	434339	.	+	.	ID=gene-tRNA-Thr-2;Name=tRNA-Thr;gbkey=Gene;gene=tRNA-Thr;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	434265	434339	.	+	.	ID=rna-tRNA-Thr-2;Parent=gene-tRNA-Thr-2;Note=tRNA Thr anticodon GGT%2C Cove score 83.71;gbkey=tRNA;gene=tRNA-Thr;product=tRNA-Thr
gi|15791399|ref|NC_002163.1|	EMBL	exon	434265	434339	.	+	.	ID=exon-tRNA-Thr-2-1;Parent=rna-tRNA-Thr-2;Note=tRNA Thr anticodon GGT%2C Cove score 83.71;gbkey=tRNA;gene=tRNA-Thr;product=tRNA-Thr
gi|15791399|ref|NC_002163.1|	EMBL	gene	434408	435607	.	+	.	ID=gene-Cj0470;Name=tuf;gbkey=Gene;gene=tuf;gene_biotype=protein_coding;locus_tag=Cj0470
gi|15791399|ref|NC_002163.1|	EMBL	CDS	434408	435607	.	+	0	ID=cds-CAL34618.1;Parent=gene-Cj0470;Dbxref=EnsemblGenomes-Gn:Cj0470,EnsemblGenomes-Tr:CAL34618,GOA:O69303,InterPro:IPR000795,InterPro:IPR004160,InterPro:IPR004161,InterPro:IPR004541,InterPro:IPR005225,InterPro:IPR009000,InterPro:IPR009001,InterPro:IPR027417,NCBI_GP:CAL34618.1;Name=CAL34618.1;Note=Original (2000) note: Cj0470%2C tuf%2C probable elongation factor TU%2C len: 399 aa%3B identical to TR:O69303 (EMBL:CJY17167) EF-TU protein (399 aa)%2C and highly similar to many e.g. EFTU_ECOLI elongation factor TU (EF-TU) (P-43) (393 aa)%2C fasta scores%3B opt: 1992 z-score: 2427.3 E(): 0%2C 73.3%25 identity in 397 aa overlap. 84.2%25 identity to HP1205. Contains 2x PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00301 GTP-binding elongation factors signature%2C and Pfam match to entry PF00009 GTP_EFTU%2CElongation factor Tu family (contains ATP/GTP binding P-loop)%2C score 545.30%2C E-value 4.2e-160%3B~Updated (2006) note: Pfam domain PF03143 Elongation factor Tu C-terminal domain and PF03144 Elongation factor Tu domain identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Protein translation and modification%3B~PMID:7011903%2C PMID:9918724;gbkey=CDS;gene=tuf;inference=protein motif:Prosite:PS00301;locus_tag=Cj0470;product=elongation factor TU;protein_id=CAL34618.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	434435	435034	.	+	.	ID=id-Cj0470;Note=HMMPfam hit to PF00009%2C Elongation factor Tu GTP binding domain%2C score 3.9e-98;gbkey=misc_feature;gene=tuf;inference=protein motif:Pfam:PF00009;locus_tag=Cj0470
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	434462	434485	.	+	.	ID=id-Cj0470-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=tuf;inference=protein motif:Prosite:PS00017;locus_tag=Cj0470
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	434558	434605	.	+	.	ID=id-Cj0470-3;Note=PS00301 GTP-binding elongation factors signature;gbkey=misc_feature;gene=tuf;inference=protein motif:Prosite:PS00301;locus_tag=Cj0470
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	435095	435304	.	+	.	ID=id-Cj0470-4;Note=HMMPfam hit to PF03144%2C Elongation factor Tu domain%2C score 3.6e-25;gbkey=misc_feature;gene=tuf;inference=protein motif:Pfam:PF03144;locus_tag=Cj0470
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	435317	435601	.	+	.	ID=id-Cj0470-5;Note=HMMPfam hit to PF03143%2C Elongation factor Tu C-terminal domain%2C score 1.4e-59;gbkey=misc_feature;gene=tuf;inference=protein motif:Pfam:PF03143;locus_tag=Cj0470
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	435548	435571	.	+	.	ID=id-Cj0470-6;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=tuf;inference=protein motif:Prosite:PS00017;locus_tag=Cj0470
gi|15791399|ref|NC_002163.1|	EMBL	gene	435660	435818	.	+	.	ID=gene-Cj0471;Name=rpmG;gbkey=Gene;gene=rpmG;gene_biotype=protein_coding;locus_tag=Cj0471
gi|15791399|ref|NC_002163.1|	EMBL	CDS	435660	435818	.	+	0	ID=cds-CAL34619.1;Parent=gene-Cj0471;Dbxref=EnsemblGenomes-Gn:Cj0471,EnsemblGenomes-Tr:CAL34619,GOA:Q9PI38,InterPro:IPR001705,InterPro:IPR011332,InterPro:IPR018264,NCBI_GP:CAL34619.1;Name=CAL34619.1;Note=Original (2000) note: Cj0471%2C rpmG%2C probable 50S ribosomal protein L33%2C len: 52 aa%3B highly similar to many e.g. RL33_BACST 50S ribosomal protein L33 (49 aa)%2C fasta scores%3B opt: 209 z-score: 388.8 E(): 2.3e-14%2C 59.2%25 identity in 49 aa overlap. 73.1%25 identity to HP1204. Contains PS00582 Ribosomal protein L33 signature and Pfam match to entry PF00471 L33%2C Ribosomal protein L33%2C score 79.10%2C E-value 9.3e-20%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:786732%2C PMID:16272117;gbkey=CDS;gene=rpmG;inference=protein motif:Prosite:PS00582;locus_tag=Cj0471;product=50S ribosomal protein L33;protein_id=CAL34619.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	435663	435806	.	+	.	ID=id-Cj0471;Note=HMMPfam hit to PF00471%2C Ribosomal protein L33%2Cscore 3.3e-21;gbkey=misc_feature;gene=rpmG;inference=protein motif:Pfam:PF00471;locus_tag=Cj0471
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	435708	435767	.	+	.	ID=id-Cj0471-2;Note=PS00582 Ribosomal protein L33 signature;gbkey=misc_feature;gene=rpmG;inference=protein motif:Prosite:PS00582;locus_tag=Cj0471
gi|15791399|ref|NC_002163.1|	EMBL	gene	435831	435906	.	+	.	ID=gene-tRNA-Trp;Name=tRNA-Trp;gbkey=Gene;gene=tRNA-Trp;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	435831	435906	.	+	.	ID=rna-tRNA-Trp;Parent=gene-tRNA-Trp;Note=tRNA Trp anticodon CCA%2C Cove score 74.26;gbkey=tRNA;gene=tRNA-Trp;product=tRNA-Trp
gi|15791399|ref|NC_002163.1|	EMBL	exon	435831	435906	.	+	.	ID=exon-tRNA-Trp-1;Parent=rna-tRNA-Trp;Note=tRNA Trp anticodon CCA%2C Cove score 74.26;gbkey=tRNA;gene=tRNA-Trp;product=tRNA-Trp
gi|15791399|ref|NC_002163.1|	EMBL	gene	435925	436104	.	+	.	ID=gene-Cj0472;Name=secE;gbkey=Gene;gene=secE;gene_biotype=protein_coding;locus_tag=Cj0472
gi|15791399|ref|NC_002163.1|	EMBL	CDS	435925	436104	.	+	0	ID=cds-CAL34620.1;Parent=gene-Cj0472;Dbxref=EnsemblGenomes-Gn:Cj0472,EnsemblGenomes-Tr:CAL34620,GOA:Q0PB41,InterPro:IPR001901,InterPro:IPR005807,InterPro:IPR022943,UniProtKB/TrEMBL:Q0PB41,NCBI_GP:CAL34620.1;Name=CAL34620.1;Note=Original (2000) note: Cj0472%2C secE%2C probable preprotein translocase SecE subunit%2C len: 59 aa%3B similar to many e.g. SECE_THEMA preprotein translocase SecE subunit (65 aa)%2C fasta scores%3B opt: 133 z-score: 288.0 E(): 9.5e-09%2C 34.5%25 identity in 58 aa overlap. and SECE_BACSU preprotein translocase SecE subunit (59 aa)%2Cfasta scores%3B opt: 96 z-score: 191.3 E(): 0.0023%2C 29.8%25 identity in 57 aa overlap. CDS present in Hp%2C but not predicted%3B 53%25 identity to positions c(1280048..1280227). Contains Pfam match to entry PF00584 SecE%2CSecE/Sec61-gamma subunits of protein translocation complex%2C score 39.50%2C E-value 7.7e-08%3B~Updated (2006) note: Characterised within Bacillus subtilis (and many others)%2C with marginal identity scores. Putative not added to product function. Functional classification - Protein and peptide secretion%3B~PMID:7968510;gbkey=CDS;gene=secE;inference=protein motif:Pfam:PF00584;locus_tag=Cj0472;product=preprotein translocase SecE subunit;protein_id=CAL34620.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	435931	436101	.	+	.	ID=id-Cj0472;Note=HMMPfam hit to PF00584%2C SecE/Sec61-gamma subunits of protein translo%2C score 4.9e-09;gbkey=misc_feature;gene=secE;inference=protein motif:Pfam:PF00584;locus_tag=Cj0472
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	436009	436077	.	+	.	ID=id-Cj0472-2;Note=1 probable transmembrane helix predicted for Cj0472 by TMHMM2.0 at aa 29-51;gbkey=misc_feature;gene=secE;inference=protein motif:TMHMM:2.0;locus_tag=Cj0472
gi|15791399|ref|NC_002163.1|	EMBL	gene	436114	436647	.	+	.	ID=gene-Cj0473;Name=nusG;gbkey=Gene;gene=nusG;gene_biotype=protein_coding;locus_tag=Cj0473
gi|15791399|ref|NC_002163.1|	EMBL	CDS	436114	436647	.	+	0	ID=cds-CAL34621.1;Parent=gene-Cj0473;Dbxref=EnsemblGenomes-Gn:Cj0473,EnsemblGenomes-Tr:CAL34621,GOA:Q9PI36,InterPro:IPR001062,InterPro:IPR005824,InterPro:IPR006645,InterPro:IPR008991,InterPro:IPR014722,InterPro:IPR015869,NCBI_GP:CAL34621.1;Name=CAL34621.1;Note=Original (2000) note: Cj0473%2C nusG%2C probable transcription antitermination protein%2C len: 177 aa%3B similar to many e.g. NUSG_ECOLI transcription antitermination protein NUSG (181 aa)%2C fasta scores%3B opt: 516 z-score: 868.1 E(): 0%2C 41.0%25 identity in 173 aa overlap. 69.9%25 identity to HP1203. Contains PS01014 Transcription termination factor nusG signature%3B~Updated (2006) note: Pfam domains PF02357 Transcription termination factor nusG and PF00467 KOW motif were identified within CDS. In addition%2C Prosite PS01331 THYMIDYLATE_KINASE%2C Thymidylate kinase was identified. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:7968510%2C PMID:8181706;gbkey=CDS;gene=nusG;inference=protein motif:Prosite:PS01331;locus_tag=Cj0473;product=transcription antitermination protein;protein_id=CAL34621.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	436120	436251	.	+	.	ID=id-Cj0473;Note=HMMPfam hit to PF02357%2C Transcription termination factor nusG%2C score 2e-14;gbkey=misc_feature;gene=nusG;inference=protein motif:Pfam:PF02357;locus_tag=Cj0473
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	436480	436593	.	+	.	ID=id-Cj0473-2;Note=HMMPfam hit to PF00467%2C KOW motif%2C score 2.4e-07;gbkey=misc_feature;gene=nusG;inference=protein motif:Pfam:PF00467;locus_tag=Cj0473
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	436588	436617	.	+	.	ID=id-Cj0473-3;Note=PS01014 Transcription termination factor nusG signature;gbkey=misc_feature;gene=nusG;inference=protein motif:Prosite:PS01014;locus_tag=Cj0473
gi|15791399|ref|NC_002163.1|	EMBL	gene	436673	437098	.	+	.	ID=gene-Cj0474;Name=rplK;gbkey=Gene;gene=rplK;gene_biotype=protein_coding;locus_tag=Cj0474
gi|15791399|ref|NC_002163.1|	EMBL	CDS	436673	437098	.	+	0	ID=cds-CAL34622.1;Parent=gene-Cj0474;Dbxref=EnsemblGenomes-Gn:Cj0474,EnsemblGenomes-Tr:CAL34622,GOA:Q9PI35,InterPro:IPR000911,InterPro:IPR006519,InterPro:IPR020783,InterPro:IPR020784,InterPro:IPR020785,NCBI_GP:CAL34622.1;Name=CAL34622.1;Note=Original (2000) note: Cj0474%2C rplK%2C 50S ribosomal protein L11%2C len: 141 aa%3B highly similar to many e.g. RL11_ECOLI 50S ribosomal protein L11 (141 aa)%2C fasta scores%3B opt: 560 z-score: 949.6 E(): 0%2C 61.7%25 identity in 141 aa overlap. 77.3%25 identity to HP1202. Contains PS00359 Ribosomal protein L11 signature and Pfam match to entry PF00298 L11%2C Ribosomal protein L11%2C score 244.90%2C E-value 1.1e-69%3B~Updated (2006) note: Pfam domain PF03946 Ribosomal protein L11 identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:7004866;gbkey=CDS;gene=rplK;inference=protein motif:Prosite:PS00359;locus_tag=Cj0474;product=50S ribosomal protein L11;protein_id=CAL34622.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	436694	436870	.	+	.	ID=id-Cj0474;Note=HMMPfam hit to PF03946%2C Ribosomal protein L11%2CN-terminal dom%2C score 1.4e-33;gbkey=misc_feature;gene=rplK;inference=protein motif:Pfam:PF03946;locus_tag=Cj0474
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	436883	437089	.	+	.	ID=id-Cj0474-2;Note=HMMPfam hit to PF00298%2C Ribosomal protein L11%2C RNA binding do%2C score 9.7e-27;gbkey=misc_feature;gene=rplK;inference=protein motif:Pfam:PF00298;locus_tag=Cj0474
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	437048	437095	.	+	.	ID=id-Cj0474-3;Note=PS00359 Ribosomal protein L11 signature;gbkey=misc_feature;gene=rplK;inference=protein motif:Prosite:PS00359;locus_tag=Cj0474
gi|15791399|ref|NC_002163.1|	EMBL	gene	437153	437854	.	+	.	ID=gene-Cj0475;Name=rplA;gbkey=Gene;gene=rplA;gene_biotype=protein_coding;locus_tag=Cj0475
gi|15791399|ref|NC_002163.1|	EMBL	CDS	437153	437854	.	+	0	ID=cds-CAL34623.1;Parent=gene-Cj0475;Dbxref=EnsemblGenomes-Gn:Cj0475,EnsemblGenomes-Tr:CAL34623,GOA:Q9PI34,InterPro:IPR002143,InterPro:IPR005878,InterPro:IPR016094,InterPro:IPR016095,InterPro:IPR023673,InterPro:IPR023674,InterPro:IPR028364,NCBI_GP:CAL34623.1;Name=CAL34623.1;Note=Original (2000) note: Cj0475%2C rplA%2C 50S ribosomal protein L1%2C len: 233 aa%3B RL1_ECOLI 50S ribosomal protein L1 (233 aa)%2C fasta scores%3B opt: 773 z-score: 1245.3 E(): 0%2C 50.4%25 identity in 224 aa overlap. 68.4%25 identity to HP1201. Contains PS01199 Ribosomal protein L1 signature and Pfam match to entry PF00687 L1%2C L1P family of ribosomal proteins%2C score 403.80%2C E-value 1.6e-117%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:365581%2C PMID:16272117;gbkey=CDS;gene=rplA;inference=protein motif:Prosite:PS01199;locus_tag=Cj0475;product=50S ribosomal protein L1;protein_id=CAL34623.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	437195	437815	.	+	.	ID=id-Cj0475;Note=HMMPfam hit to PF00687%2C Ribosomal protein L1p/L10e family%2C score 3.8e-119;gbkey=misc_feature;gene=rplA;inference=protein motif:Pfam:PF00687;locus_tag=Cj0475
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	437513	437569	.	+	.	ID=id-Cj0475-2;Note=PS01199 Ribosomal protein L1 signature;gbkey=misc_feature;gene=rplA;inference=protein motif:Prosite:PS01199;locus_tag=Cj0475
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	437883	437931	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:437883..437931;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	438006	438485	.	+	.	ID=gene-Cj0476;Name=rplJ;gbkey=Gene;gene=rplJ;gene_biotype=protein_coding;locus_tag=Cj0476
gi|15791399|ref|NC_002163.1|	EMBL	CDS	438006	438485	.	+	0	ID=cds-CAL34624.1;Parent=gene-Cj0476;Dbxref=EnsemblGenomes-Gn:Cj0476,EnsemblGenomes-Tr:CAL34624,GOA:Q9PI33,InterPro:IPR001790,InterPro:IPR002363,InterPro:IPR022973,NCBI_GP:CAL34624.1;Name=CAL34624.1;Note=Original (2000) note: Cj0476%2C rplJ%2C probable 50S ribosomal protein L10%2C len: 159 aa%3B similar to many%2C e.g. RL10_BACSU 50S ribosomal protein L10 (165 aa)%2C fasta scores%3B opt: 312 z-score: 558.7 E(): 8e-24%2C 35.8%25 identity in 159 aa overlap. 46.2%25 identity to HP1200. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C and Pfam match to entry PF00466 L10%2C Ribosomal protein L10%2C score 74.80%2C E-value 1.7e-18%3B~Updated (2006) note: Prosite domain PS01109 RIBOSOMAL_L10%2C Eubacterial ribosomal protein L10 identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:782920;gbkey=CDS;gene=rplJ;inference=protein motif:Prosite:PS01109;locus_tag=Cj0476;product=50S ribosomal protein L10;protein_id=CAL34624.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	438006	438293	.	+	.	ID=id-Cj0476;Note=HMMPfam hit to PF00466%2C Ribosomal protein L10%2Cscore 9.6e-20;gbkey=misc_feature;gene=rplJ;inference=protein motif:Pfam:PF00466;locus_tag=Cj0476
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	438186	438209	.	+	.	ID=id-Cj0476-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=rplJ;inference=protein motif:Prosite:PS00017;locus_tag=Cj0476
gi|15791399|ref|NC_002163.1|	EMBL	gene	438506	438883	.	+	.	ID=gene-Cj0477;Name=rplL;gbkey=Gene;gene=rplL;gene_biotype=protein_coding;locus_tag=Cj0477
gi|15791399|ref|NC_002163.1|	EMBL	CDS	438506	438883	.	+	0	ID=cds-CAL34625.1;Parent=gene-Cj0477;Dbxref=EnsemblGenomes-Gn:Cj0477,EnsemblGenomes-Tr:CAL34625,GOA:Q9PI32,InterPro:IPR000206,InterPro:IPR008932,InterPro:IPR013823,InterPro:IPR014719,NCBI_GP:CAL34625.1;Name=CAL34625.1;Note=Original (2000) note: Cj0477%2C rplL%2C probable 50S ribosomal protein L7/L12%2C len: 125 aa%3B similar to many e.g. RL7_ECOLI 50S ribosomal protein L7/L12 (L8) (120 aa)%2Cfasta scores%3B opt: 428 z-score: 623.7 E(): 1.9e-27%2C 58.1%25 identity in 124 aa overlap. 73.6%25 identity to HP1199. Contains Pfam match to entry PF00542 L12%2C Ribosomal protein L7/L12 C-terminal domain%2C score 135.90%2C E-value 7.1e-37%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:773698%2C PMID:9515737;gbkey=CDS;gene=rplL;inference=protein motif:Pfam:PF00542;locus_tag=Cj0477;product=50S ribosomal protein L7/L12;protein_id=CAL34625.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	438677	438880	.	+	.	ID=id-Cj0477;Note=HMMPfam hit to PF00542%2C Ribosomal protein L7/L12 C-terminal dom%2C score 2.3e-38;gbkey=misc_feature;gene=rplL;inference=protein motif:Pfam:PF00542;locus_tag=Cj0477
gi|15791399|ref|NC_002163.1|	EMBL	gene	438992	443128	.	+	.	ID=gene-Cj0478;Name=rpoB;gbkey=Gene;gene=rpoB;gene_biotype=protein_coding;locus_tag=Cj0478
gi|15791399|ref|NC_002163.1|	EMBL	CDS	438992	443128	.	+	0	ID=cds-CAL34626.1;Parent=gene-Cj0478;Dbxref=EnsemblGenomes-Gn:Cj0478,EnsemblGenomes-Tr:CAL34626,GOA:Q46124,InterPro:IPR007120,InterPro:IPR007121,InterPro:IPR007641,InterPro:IPR007642,InterPro:IPR007644,InterPro:IPR007645,InterPro:IPR010243,InterPro:IPR014724,InterPro:IPR015712,InterPro:IPR019462,NCBI_GP:CAL34626.1;Name=CAL34626.1;Note=Original (2000) note: Cj0478%2C rpoB%2C DNA-directed RNA polymerase beta chain. len: 1378 aa%3B almost identical%2Cin part%2C to RPOB_CAMJE (fragment) (694 aa)%3B 99.6%25 identity in 684 aa overlap%2C and highly similar to many e.g. RPOB_ECOLI DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (1342 aa)%2C fasta scores%3B opt: 2230 z-score: 4457.9 E(): 0%2C 48.1%25 identity in 1371 aa overlap. 68.5%25 identity to N-terminus of HP1198. Contains PS01166 RNA polymerases beta chain signature and Pfam match to entry PF00562 RNA_pol_B%2C RNA polymerase beta subunit%2C score 903.00%2C E-value 8.6e-268%3B~Updated (2006) note: Four additional Pfam domains have now been identified all encoding the same motif%3B RNA polymerase Rpb2%2C domain. Further support given to product function. Characterisation within Campylobacter jejuni. Putative not added to product function. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:7489896;gbkey=CDS;gene=rpoB;inference=protein motif:Prosite:PS01166;locus_tag=Cj0478;product=DNA-directed RNA polymerase beta chain;protein_id=CAL34626.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	439073	440563	.	+	.	ID=id-Cj0478;Note=HMMPfam hit to PF04563%2C RNA polymerase beta subunit%2C score 3e-05;gbkey=misc_feature;gene=rpoB;inference=protein motif:Pfam:PF04563;locus_tag=Cj0478
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	439454	440392	.	+	.	ID=id-Cj0478-2;Note=HMMPfam hit to PF04561%2C RNA polymerase Rpb2%2Cdomain%2C score 1.8e-11;gbkey=misc_feature;gene=rpoB;inference=protein motif:Pfam:PF04561;locus_tag=Cj0478
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	440564	440782	.	+	.	ID=id-Cj0478-3;Note=HMMPfam hit to PF04565%2C RNA polymerase Rpb2%2Cdomain%2C score 3.9e-44;gbkey=misc_feature;gene=rpoB;inference=protein motif:Pfam:PF04565;locus_tag=Cj0478
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	441179	442876	.	+	.	ID=id-Cj0478-4;Note=HMMPfam hit to PF00562%2C RNA polymerase Rpb2%2Cdomain%2C score 1.4e-148;gbkey=misc_feature;gene=rpoB;inference=protein motif:Pfam:PF00562;locus_tag=Cj0478
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	442265	442303	.	+	.	ID=id-Cj0478-5;Note=PS01166 RNA polymerases beta chain signature;gbkey=misc_feature;gene=rpoB;inference=protein motif:Prosite:PS01166;locus_tag=Cj0478
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	442880	443110	.	+	.	ID=id-Cj0478-6;Note=HMMPfam hit to PF04560%2C RNA polymerase Rpb2%2Cdomain%2C score 3.7e-46;gbkey=misc_feature;gene=rpoB;inference=protein motif:Pfam:PF04560;locus_tag=Cj0478
gi|15791399|ref|NC_002163.1|	EMBL	gene	443121	447674	.	+	.	ID=gene-Cj0479;Name=rpoC;gbkey=Gene;gene=rpoC;gene_biotype=protein_coding;locus_tag=Cj0479
gi|15791399|ref|NC_002163.1|	EMBL	CDS	443121	447674	.	+	0	ID=cds-CAL34627.1;Parent=gene-Cj0479;Dbxref=EnsemblGenomes-Gn:Cj0479,EnsemblGenomes-Tr:CAL34627,GOA:Q9PI30,InterPro:IPR000722,InterPro:IPR006592,InterPro:IPR007066,InterPro:IPR007080,InterPro:IPR007081,InterPro:IPR007083,InterPro:IPR012754,NCBI_GP:CAL34627.1;Name=CAL34627.1;Note=Original (2000) note: Cj0479%2C rpoC%2C DNA-directed RNA polymerase beta' chain%2C len: 1517 aa%3B highly similar to many e.g. RPOC_ECOLI DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (1407 aa)%2C fasta scores%3B opt: 1505 z-score: 5793.8 E(): 0%2C 46.1%25 identity in 1541 aa overlap. 69.7%25 identity to C-terminus of HP1198. Contains Pfam match to entry PF00623 RNA_pol_A%2C RNA polymerase alpha subunit%2C score 779.40%2C E-value 1.4e-230%3B~Updated (2006) note: A total of five Pfam domains have now been identified all encoding the same motif%3B RNA polymerase Rpb1 domain. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:6287430%2C PMID:6278450;gbkey=CDS;gene=rpoC;inference=protein motif:Pfam:PF00623;locus_tag=Cj0479;product=DNA-directed RNA polymerase beta' chain;protein_id=CAL34627.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	443163	444212	.	+	.	ID=id-Cj0479;Note=HMMPfam hit to PF04997%2C RNA polymerase Rpb1%2Cdomain%2C score 3.7e-127;gbkey=misc_feature;gene=rpoC;inference=protein motif:Pfam:PF04997;locus_tag=Cj0479
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	444216	444644	.	+	.	ID=id-Cj0479-2;Note=HMMPfam hit to PF00623%2C RNA polymerase Rpb1%2Cdomain%2C score 6.6e-84;gbkey=misc_feature;gene=rpoC;inference=protein motif:Pfam:PF00623;locus_tag=Cj0479
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	444651	445079	.	+	.	ID=id-Cj0479-3;Note=HMMPfam hit to PF04983%2C RNA polymerase Rpb1%2Cdomain%2C score 3.5e-44;gbkey=misc_feature;gene=rpoC;inference=protein motif:Pfam:PF04983;locus_tag=Cj0479
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	445152	445406	.	+	.	ID=id-Cj0479-4;Note=HMMPfam hit to PF05000%2C RNA polymerase Rpb1%2Cdomain%2C score 3.6e-33;gbkey=misc_feature;gene=rpoC;inference=protein motif:Pfam:PF05000;locus_tag=Cj0479
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	445410	447512	.	+	.	ID=id-Cj0479-5;Note=HMMPfam hit to PF04998%2C RNA polymerase Rpb1%2Cdomain%2C score 6.7e-68;gbkey=misc_feature;gene=rpoC;inference=protein motif:Pfam:PF04998;locus_tag=Cj0479
gi|15791399|ref|NC_002163.1|	EMBL	gene	447705	448466	.	-	.	ID=gene-Cj0480c;Name=Cj0480c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0480c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	447705	448466	.	-	0	ID=cds-CAL34628.1;Parent=gene-Cj0480c;Dbxref=EnsemblGenomes-Gn:Cj0480c,EnsemblGenomes-Tr:CAL34628,GOA:Q0PB33,InterPro:IPR005471,InterPro:IPR011991,InterPro:IPR014757,InterPro:IPR029016,UniProtKB/TrEMBL:Q0PB33,NCBI_GP:CAL34628.1;Name=CAL34628.1;Note=Original (2000) note: Cj0480c%2C probable transcriptional regulator%2C len: 253 aa%3B similar to many e.g. KDGR_ECOLI transcriptional regulator KDGR (263 aa)%2Cfasta scores%3B opt: 305 z-score: 319.1 E(): 1.8e-10%2C 24.1%25 identity in 212 aa overlap. No Hp match. Contains helix-turn-helix motif at aa 21-42 (Score 1424%2C +4.04 SD)%3B~Updated (2006) note: Pfam domain PF01614 Bacterial transcriptional regulator identified within CDS. This family of bacterial transcriptional regulators includes the glycerol operon regulatory protein and acetate operon repressor both of which are members of the iclR family. These proteins have a Helix-Turn-Helix motif at the N-terminus. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Broad regulatory functions;gbkey=CDS;inference=protein motif:Pfam:PF01614;locus_tag=Cj0480c;product=putative transcriptional regulator;protein_id=CAL34628.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	447744	448295	.	-	.	ID=id-Cj0480c;Note=HMMPfam hit to PF01614%2C Bacterial transcriptional regulator%2C score 8.6e-16;gbkey=misc_feature;inference=protein motif:Pfam:PF01614;locus_tag=Cj0480c
gi|15791399|ref|NC_002163.1|	EMBL	gene	448697	449605	.	+	.	ID=gene-Cj0481;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=Cj0481
gi|15791399|ref|NC_002163.1|	EMBL	CDS	448697	449605	.	+	0	ID=cds-CAL34629.1;Parent=gene-Cj0481;Dbxref=EnsemblGenomes-Gn:Cj0481,EnsemblGenomes-Tr:CAL34629,GOA:Q0PB32,InterPro:IPR002220,InterPro:IPR013785,InterPro:IPR020625,UniProtKB/TrEMBL:Q0PB32,NCBI_GP:CAL34629.1;Name=CAL34629.1;Note=Original (2000) note: Cj0481%2C probable lyase%2C len: 302 aa%3B similar to members of the DHDPS family%3B e.g. DAPA_BACSU dihydrodipicolinate synthase (290 aa)%2C fasta scores%3B opt: 444 z-score: 557.2 E(): 9.6e-24%2C 27.6%25 identity in 275 aa overlap%2C and NPL_HAEIN probable N-acetylneuraminate lyase subunit (293 aa)%2C fasta scores%3B opt: 358 z-score: 428.6 E(): 1.4e-16%2C 28.5%25 identity in 291 aa overlap. No Hp match. Also similar to C. jejuni dapA%2C Cj0806%3B 26.1%25 identity in 295 aa overlap. ContainsPfam match to entry PF00701 DHDPS%2CDihydrodipicolinate synthetase%2C score 70.30%2C E-value 4e-17%3B~Updated (2006) note: Based on similarity search results%2C product modified to more specific family member. Characterised within Bacillus subtilis and Eschereichia coli%2C however identity scores were marginal. Putative kept within product function. Functional classification - Misc%3B~PMID:8098035%2C PMID:P9047371;gbkey=CDS;gene=dapA;inference=protein motif:Pfam:PF00701;locus_tag=Cj0481;product=putative dihydrodipicolinate synthase;protein_id=CAL34629.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	448703	449569	.	+	.	ID=id-Cj0481;Note=HMMPfam hit to PF00701%2C Dihydrodipicolinate synthetase family%2C score 3.8e-30;gbkey=misc_feature;gene=dapA;inference=protein motif:Pfam:PF00701;locus_tag=Cj0481
gi|15791399|ref|NC_002163.1|	EMBL	gene	449602	449865	.	+	.	ID=gene-Cj0482;Name=uxaA';gbkey=Gene;gene=uxaA';gene_biotype=protein_coding;locus_tag=Cj0482
gi|15791399|ref|NC_002163.1|	EMBL	CDS	449602	449865	.	+	0	ID=cds-CAL34630.1;Parent=gene-Cj0482;Dbxref=EnsemblGenomes-Gn:Cj0482,EnsemblGenomes-Tr:CAL34630,GOA:Q0PB31,InterPro:IPR013974,UniProtKB/TrEMBL:Q0PB31,NCBI_GP:CAL34630.1;Name=CAL34630.1;Note=Original (2000) note: Cj0482%2C uxaA' possible altronate hydrolase N-terminus%2C len: 87 aa%3B similar to N-terminus of e.g. UXAA_ECOLI altronate hydrolase (495 aa)%2C fasta scores%3B opt: 199 z-score: 322.2 E(): 1.2e-10. 46.2%25 identity in 78 aa overlap. Simlarity continues in downstream ORF Cj0485. No Hp match. Note that B. subtilis paralog of uxaA%2C YCBI_BACSU%2C also has a separate N-terminus (YCBH_BACSU)%3B~Updated (2006) note: Pfam domain PF04292 D-galactarate dehydratase / Altronate hydrolase identified within CDS. Further support given to product function. Characterisation work carried out within Escherichia coli with acceptable identity score. C-terminus seems to be downstream Cj0483. Gene names for Cj0482 and Cj0483 are identical with a ' denoting two separate terminals for the same CDS. May well be a pseudogene. Putative kept within product function. Functional classification - Central intermediary metabolism - General%3B~PMID:3038546%2C PMID:10762278;gbkey=CDS;gene=uxaA';inference=protein motif:Pfam:PF04292;locus_tag=Cj0482;product=putative altronate hydrolase N-terminus;protein_id=CAL34630.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	449608	449847	.	+	.	ID=id-Cj0482;Note=HMMPfam hit to PF04292%2C D-galactarate dehydratase / Altronate hydrol%2C score 1.1e-47;gbkey=misc_feature;gene=uxaA';inference=protein motif:Pfam:PF04292;locus_tag=Cj0482
gi|15791399|ref|NC_002163.1|	EMBL	gene	449862	451034	.	+	.	ID=gene-Cj0483;Name=uxaA';gbkey=Gene;gene=uxaA';gene_biotype=protein_coding;locus_tag=Cj0483
gi|15791399|ref|NC_002163.1|	EMBL	CDS	449862	451034	.	+	0	ID=cds-CAL34631.1;Parent=gene-Cj0483;Dbxref=EnsemblGenomes-Gn:Cj0483,EnsemblGenomes-Tr:CAL34631,GOA:Q0PB30,InterPro:IPR007392,UniProtKB/TrEMBL:Q0PB30,NCBI_GP:CAL34631.1;Name=CAL34631.1;Note=Original (2000) note: Cj0483%2C uxaA' possible altronate hydrolase C-terminus%2C len: 390 aa%3B similar to C-terminus of e.g. UXAA_ECOLI altronate hydrolase (495 aa)%2C fasta scores%3B opt: 832 z-score: 1121.7 E(): 0%2C 36.1%25 identity in 391 aa overlap. Simlarity continues from upstream ORF Cj0482. No Hp match. Note that B. subtilis paralog of uxaA%2C YCBI_BACSU%2C also has a separate N-terminus (YCBH_BACSU)%3B~Updated (2006) note: Pfam domain PF04295 D-galactarate dehydratase / Altronate hydrolase identified within CDS. Further support given to product function. Characterisation work carried out within Escherichia coli with acceptable identity score. N-terminus seems to be downstream Cj0483. Gene names for Cj0482 and Cj0483 are identical with a ' denoting two separate terminals for the same CDS. May well be a pseudogene. Putative kept within product function. Functional classification - Central intermediary metabolism - General%3B~PMID:3038546%2C PMID:10762278;gbkey=CDS;gene=uxaA';inference=protein motif:Pfam:PF04295;locus_tag=Cj0483;product=putative altronate hydrolase C-terminus;protein_id=CAL34631.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	449862	451031	.	+	.	ID=id-Cj0483;Note=HMMPfam hit to PF04295%2C D-galactarate dehydratase / Altronate hydrol%2C score 3.8e-251;gbkey=misc_feature;gene=uxaA';inference=protein motif:Pfam:PF04295;locus_tag=Cj0483
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	450090	450122	.	+	.	ID=id-Cj0483-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=uxaA';inference=protein motif:Prosite:PS00013;locus_tag=Cj0483
gi|15791399|ref|NC_002163.1|	EMBL	gene	451046	452278	.	+	.	ID=gene-Cj0484;Name=Cj0484;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0484
gi|15791399|ref|NC_002163.1|	EMBL	CDS	451046	452278	.	+	0	ID=cds-CAL34632.1;Parent=gene-Cj0484;Dbxref=EnsemblGenomes-Gn:Cj0484,EnsemblGenomes-Tr:CAL34632,GOA:Q0PB29,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0PB29,NCBI_GP:CAL34632.1;Name=CAL34632.1;Note=Original (2000) note: Cj0484%2C probable transmembrane transport protein%2C len: 410 aa%3B similar to members of the phalate transporter family e.g. TR:Q44470 (EMBL:U25634) Agrobacterium vitis putative tartrate transporter (433 aa)%2C fasta scores%3B opt: 1004 z-score: 1322.2 E(): 0%2C 40.4%25 identity in 408 aa overlap%2C and PHT1_PSEPU phthalate transporter (451 aa)%2C fasta scores%3B opt: 663 z-score: 835.4 E(): 0%2C 29.8%25 identity in 413 aa overlap. No Hp ortholog%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily (MFS) identified within CDS. Eleven probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member due to motif match. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0484;product=putative MFS (Major Facilitator Superfamily) transport protein;protein_id=CAL34632.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	451103	451168	.	+	.	ID=id-Cj0484;Note=11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41%2C 56-78%2C 85-104%2C 114-136%2C145-167%2C 177-199%2C 242-264%2C 279-301%2C 308-330%2C 334-356 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0484;part=1/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	451211	451279	.	+	.	ID=id-Cj0484;Note=11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41%2C 56-78%2C 85-104%2C 114-136%2C145-167%2C 177-199%2C 242-264%2C 279-301%2C 308-330%2C 334-356 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0484;part=2/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	451298	451357	.	+	.	ID=id-Cj0484;Note=11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41%2C 56-78%2C 85-104%2C 114-136%2C145-167%2C 177-199%2C 242-264%2C 279-301%2C 308-330%2C 334-356 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0484;part=3/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	451385	451453	.	+	.	ID=id-Cj0484;Note=11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41%2C 56-78%2C 85-104%2C 114-136%2C145-167%2C 177-199%2C 242-264%2C 279-301%2C 308-330%2C 334-356 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0484;part=4/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	451478	451546	.	+	.	ID=id-Cj0484;Note=11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41%2C 56-78%2C 85-104%2C 114-136%2C145-167%2C 177-199%2C 242-264%2C 279-301%2C 308-330%2C 334-356 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0484;part=5/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	451574	451642	.	+	.	ID=id-Cj0484;Note=11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41%2C 56-78%2C 85-104%2C 114-136%2C145-167%2C 177-199%2C 242-264%2C 279-301%2C 308-330%2C 334-356 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0484;part=6/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	451769	451837	.	+	.	ID=id-Cj0484;Note=11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41%2C 56-78%2C 85-104%2C 114-136%2C145-167%2C 177-199%2C 242-264%2C 279-301%2C 308-330%2C 334-356 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0484;part=7/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	451880	451948	.	+	.	ID=id-Cj0484;Note=11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41%2C 56-78%2C 85-104%2C 114-136%2C145-167%2C 177-199%2C 242-264%2C 279-301%2C 308-330%2C 334-356 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0484;part=8/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	451967	452035	.	+	.	ID=id-Cj0484;Note=11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41%2C 56-78%2C 85-104%2C 114-136%2C145-167%2C 177-199%2C 242-264%2C 279-301%2C 308-330%2C 334-356 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0484;part=9/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	452045	452113	.	+	.	ID=id-Cj0484;Note=11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41%2C 56-78%2C 85-104%2C 114-136%2C145-167%2C 177-199%2C 242-264%2C 279-301%2C 308-330%2C 334-356 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0484;part=10/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	452138	452206	.	+	.	ID=id-Cj0484;Note=11 probable transmembrane helices predicted for Cj0484 by TMHMM2.0 at aa 20-41%2C 56-78%2C 85-104%2C 114-136%2C145-167%2C 177-199%2C 242-264%2C 279-301%2C 308-330%2C 334-356 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0484;part=11/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	451115	452224	.	+	.	ID=id-Cj0484-2;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 6.8e-47;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj0484
gi|15791399|ref|NC_002163.1|	EMBL	gene	452320	453108	.	+	.	ID=gene-Cj0485;Name=Cj0485;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0485
gi|15791399|ref|NC_002163.1|	EMBL	CDS	452320	453108	.	+	0	ID=cds-CAL34633.1;Parent=gene-Cj0485;Dbxref=EnsemblGenomes-Gn:Cj0485,EnsemblGenomes-Tr:CAL34633,GOA:Q0PB28,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:Q0PB28,NCBI_GP:CAL34633.1;Name=CAL34633.1;Note=Original (2000) note: Cj0485%2C probable oxidoreductase%2C len: 262 aa%3B similar to many e.g. FABG_AQUAE 3-oxoacyl-[acyl-carrier protein] reductase (248 aa)%2C fasta scores%3B opt: 384 z-score: 465.5 E(): 1.2e-18%2C34.3%25 identity in 254 aa overlap%2C and BA71_EUBSP 7-alpha-hydroxysteroid dehydrogenase (249 aa)%2C fasta scores%3B opt: 349 z-score: 421.2 E(): 3.6e-16%2C 32.3%25 identity in 254 aa overlap. No Hp ortholog. Also similar to C. jejuni fabG%2C Cj0435 (31.7%25 identity in 252 aa overlap). Contains Pfam matches to entry PF00106 adh_short%2C Alcohol/other dehydrogenases%2C short chain type%2Cscore 143.40%2C E-value 4e-39 and to entry PF00678 adh_short_C2%2C Short chain dehydrogenase /reductase C-terminus%2C score 31.00%2C E-value 2.7e-05%3B~Updated (2006) note: Characterisation work in more than one species with marginal identity scores. Putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Pfam:PF00678;locus_tag=Cj0485;product=putative oxidoreductase;protein_id=CAL34633.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	452347	453069	.	+	.	ID=id-Cj0485;Note=HMMPfam hit to PF00106%2C short chain dehydrogenase%2Cscore 2.8e-49;gbkey=misc_feature;inference=protein motif:Pfam:PF00106;locus_tag=Cj0485
gi|15791399|ref|NC_002163.1|	EMBL	gene	453119	454375	.	+	.	ID=gene-Cj0486;Name=Cj0486;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0486
gi|15791399|ref|NC_002163.1|	EMBL	CDS	453119	454375	.	+	0	ID=cds-CAL34634.1;Parent=gene-Cj0486;Dbxref=EnsemblGenomes-Gn:Cj0486,EnsemblGenomes-Tr:CAL34634,GOA:Q0PB27,InterPro:IPR005275,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0PB27,NCBI_GP:CAL34634.1;Name=CAL34634.1;Note=Original (2000) note: Cj0486%2C probable sugar transporter%2C len: 418 aa%3B simlar to members of the FHS family e.g. FUCP_ECOLI L-fucose permease (438 aa)%2C fasta scores%3B opt: 848 z-score: 1022.1 E(): 0%2C 37.2%25 identity in 390 aa overlap%2C and GLUP_BRUAB glucose/galactose transporter (412 aa)%2C fasta scores%3B opt: 456 z-score: 830.5 E(): 0%2C 33.4%25 identity in 410 aa overlap. 32.6%25 identity to HP1174%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Prosite PS50850 MFS%2C Major facilitator superfamily also identified along with twelve probable transmembrane helices predicted by TMHMM2.0. TIGRFAM motif TIGR00885 L-fucose permease was also identified. Fasta search gave high score to L-fucose-proton symporter (L-fucose permease). This permease mediates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell (symport system). It can also transport L-galactose and D-arabinose%2C but at reduced rates compared with L-fucose. Other sugar transporters also identified. Product function kept the same along with putative. Functional classification - Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:15919996%2C PMID:7783647%2C PMID:8052131;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0486;product=putative sugar transporter;protein_id=CAL34634.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	453143	453211	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=1/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	453254	453322	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=2/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	453341	453409	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=3/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	453422	453490	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=4/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	453548	453607	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=5/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	453665	453733	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=6/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	453824	453892	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=7/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	453935	453988	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=8/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	454025	454078	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=9/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	454091	454159	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=10/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	454193	454261	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=11/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	454271	454339	.	+	.	ID=id-Cj0486;Note=12 probable transmembrane helices predicted for Cj0486 by TMHMM2.0 at aa 9-31%2C 46-68%2C 75-97%2C 102-124%2C144-163%2C 183-205%2C 236-258%2C 273-290%2C 303-320%2C 325-347%2C359-381 and 385-407;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0486;part=12/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	453143	454267	.	+	.	ID=id-Cj0486-2;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 2.2e-30;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj0486
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	453422	453454	.	+	.	ID=id-Cj0486-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0486
gi|15791399|ref|NC_002163.1|	EMBL	gene	454359	455129	.	+	.	ID=gene-Cj0487;Name=Cj0487;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0487
gi|15791399|ref|NC_002163.1|	EMBL	CDS	454359	455129	.	+	0	ID=cds-CAL34635.1;Parent=gene-Cj0487;Dbxref=EnsemblGenomes-Gn:Cj0487,EnsemblGenomes-Tr:CAL34635,GOA:Q0PB26,InterPro:IPR006992,UniProtKB/TrEMBL:Q0PB26,NCBI_GP:CAL34635.1;Name=CAL34635.1;Note=Original (2000) note: Cj0487%2C unknown%2C len: 256 aa%3B some similarity to Y4MH_RHISN hypothetical protein Y4MH (297 aa)%2C fasta scores%3B opt: 98 z-score: 200.8 E(): 0.00069%2C 22.7%25 identity in 295 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF04909 Amidohydrolase identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Thus%2Cputative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF04909;locus_tag=Cj0487;product=putative amidohydrolase;protein_id=CAL34635.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	454371	455123	.	+	.	ID=id-Cj0487;Note=HMMPfam hit to PF04909%2C Amidohydrolase%2C score 3.4e-29;gbkey=misc_feature;inference=protein motif:Pfam:PF04909;locus_tag=Cj0487
gi|15791399|ref|NC_002163.1|	EMBL	gene	455130	455447	.	+	.	ID=gene-Cj0488;Name=Cj0488;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0488
gi|15791399|ref|NC_002163.1|	EMBL	CDS	455130	455447	.	+	0	ID=cds-CAL34636.1;Parent=gene-Cj0488;Dbxref=EnsemblGenomes-Gn:Cj0488,EnsemblGenomes-Tr:CAL34636,GOA:Q0PB25,InterPro:IPR008000,InterPro:IPR011008,UniProtKB/TrEMBL:Q0PB25,NCBI_GP:CAL34636.1;Name=CAL34636.1;Note=Original (2000) note: Cj0488%2C unknown%2C len: %3B similar to a hypothetical protein from B. subtilis TR:O05263 (EMBL:Z93938) YULD(104 aa)%2C fasta scores%3B opt: 183 z-score: 266.1 E(): 1.6e-07%2C 33.6%25 identity in 107 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF05336 Protein of unknown function (DUF718) identified within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF05336;locus_tag=Cj0488;product=conserved hypothetical protein Cj0488;protein_id=CAL34636.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	455133	455444	.	+	.	ID=id-Cj0488;Note=HMMPfam hit to PF05336%2C Protein of unknown function (DUF718)%2C score 3e-63;gbkey=misc_feature;inference=protein motif:Pfam:PF05336;locus_tag=Cj0488
gi|15791399|ref|NC_002163.1|	EMBL	gene	455461	455682	.	+	.	ID=gene-Cj0489;Name=ald';gbkey=Gene;gene=ald';gene_biotype=protein_coding;locus_tag=Cj0489
gi|15791399|ref|NC_002163.1|	EMBL	CDS	455461	455682	.	+	0	ID=cds-CAL34637.1;Parent=gene-Cj0489;Dbxref=EnsemblGenomes-Gn:Cj0489,EnsemblGenomes-Tr:CAL34637,GOA:Q0PB24,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,UniProtKB/TrEMBL:Q0PB24,NCBI_GP:CAL34637.1;Name=CAL34637.1;Note=Original (2000) note: Cj0489%2C ald'%2C aldehyde dehydrogenase N-terminus%2C len: 73 aa%3B highly similar to ALDA_ECOLI aldehyde dehydrogenase A (EC 1.2.1.22) (478 aa)%2C fasta scores%3B opt: 229 z-score: 319.3 E(): 1.7e-10%2C51.5%25 identity in 68 aa overlap. Similarity continues into downstream ORF Cj0490. No error in the sequence can be found. No Hp match%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Gene names for Cj0489 and Cj0490 are identical with a ' denoting two separate terminals for the same CDS. May well be a pseudogene. Putative kept within product function. Functional classification - Central intermediary metabolism - General%3B~PMID:3308886;gbkey=CDS;gene=ald';locus_tag=Cj0489;product=putative aldehyde dehydrogenase N-terminus;protein_id=CAL34637.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	455718	456899	.	+	.	ID=gene-Cj0490;Name=ald';gbkey=Gene;gene=ald';gene_biotype=protein_coding;locus_tag=Cj0490
gi|15791399|ref|NC_002163.1|	EMBL	CDS	455718	456899	.	+	0	ID=cds-CAL34638.1;Parent=gene-Cj0490;Dbxref=EnsemblGenomes-Gn:Cj0490,EnsemblGenomes-Tr:CAL34638,GOA:Q0PB23,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR029510,UniProtKB/TrEMBL:Q0PB23,NCBI_GP:CAL34638.1;Name=CAL34638.1;Note=Original (2000) note: Cj0490%2C ald'%2C aldehyde dehydrogenase C-terminus%2C len: 393 aa%3B highly similar to ALDA_ECOLI aldehyde dehydrogenase A (EC 1.2.1.22) (478 aa)%2C fasta scores%3B opt: 1653 z-score: 2398.4 E(): 0%2C 63.7%25 identity in 388 aa overlap. Similarity continues from upstream ORF Cj0489. No error in the sequence can be found. No Hp match. Contains PS00687 Aldehyde dehydrogenases glutamic acid active site and Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase%2C score 433.60%2C E-value 1.8e-126%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Gene names for Cj0489 and Cj0490 are identical with a ' denoting two separate terminals for the same CDS. May well be a pseudogene. Putative kept within product function. Functional classification - Central intermediary metabolism - General%3B~PMID:3308886;gbkey=CDS;gene=ald';inference=protein motif:Prosite:PS00687;locus_tag=Cj0490;product=putative aldehyde dehydrogenase C-terminus;protein_id=CAL34638.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	455721	456881	.	+	.	ID=id-Cj0490;Note=HMMPfam hit to PF00171%2C Aldehyde dehydrogenase family%2C score 9.2e-130;gbkey=misc_feature;gene=ald';inference=protein motif:Pfam:PF00171;locus_tag=Cj0490
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	455853	455921	.	+	.	ID=id-Cj0490-2;Note=1 probable transmembrane helix predicted for Cj0490 by TMHMM2.0 at aa 46-68;gbkey=misc_feature;gene=ald';inference=protein motif:TMHMM:2.0;locus_tag=Cj0490
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	456195	456218	.	+	.	ID=id-Cj0490-3;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site;gbkey=misc_feature;gene=ald';inference=protein motif:Prosite:PS00687;locus_tag=Cj0490
gi|15791399|ref|NC_002163.1|	EMBL	gene	457227	457613	.	+	.	ID=gene-Cj0491;Name=rpsL;gbkey=Gene;gene=rpsL;gene_biotype=protein_coding;locus_tag=Cj0491
gi|15791399|ref|NC_002163.1|	EMBL	CDS	457227	457613	.	+	0	ID=cds-CAL34639.1;Parent=gene-Cj0491;Dbxref=EnsemblGenomes-Gn:Cj0491,EnsemblGenomes-Tr:CAL34639,GOA:Q9PI18,InterPro:IPR005679,InterPro:IPR006032,InterPro:IPR012340,NCBI_GP:CAL34639.1;Name=CAL34639.1;Note=Original (2000) note: Cj0491%2C rpsL%2C 30S ribosomal protein S12%2C len: 128 aa%3B highly similar to many e.g. RS12_ECOLI 30S ribosomal protein S12(123 aa)%2C fasta scores%3B opt: 642 z-score: 1211.5 E(): 0%2C 76.2%25 identity in 122 aa overlap. 87.5%25 identity to HP1197. Contains PS00055 Ribosomal protein S12 signature and Pfam match to entry PF00164 S12%2C Ribosomal protein S12%2C score 259.60%2C E-value 4.3e-74%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:320034;gbkey=CDS;gene=rpsL;inference=protein motif:Prosite:PS00055;locus_tag=Cj0491;product=30S ribosomal protein S12;protein_id=CAL34639.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	457233	457595	.	+	.	ID=id-Cj0491;Note=HMMPfam hit to PF00164%2C Ribosomal protein S12%2Cscore 4.3e-73;gbkey=misc_feature;gene=rpsL;inference=protein motif:Pfam:PF00164;locus_tag=Cj0491
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	457353	457376	.	+	.	ID=id-Cj0491-2;Note=PS00055 Ribosomal protein S12 signature;gbkey=misc_feature;gene=rpsL;inference=protein motif:Prosite:PS00055;locus_tag=Cj0491
gi|15791399|ref|NC_002163.1|	EMBL	gene	457683	458153	.	+	.	ID=gene-Cj0492;Name=rpsG;gbkey=Gene;gene=rpsG;gene_biotype=protein_coding;locus_tag=Cj0492
gi|15791399|ref|NC_002163.1|	EMBL	CDS	457683	458153	.	+	0	ID=cds-CAL34640.1;Parent=gene-Cj0492;Dbxref=EnsemblGenomes-Gn:Cj0492,EnsemblGenomes-Tr:CAL34640,GOA:Q9PI17,InterPro:IPR000235,InterPro:IPR005717,InterPro:IPR020606,InterPro:IPR023798,NCBI_GP:CAL34640.1;Name=CAL34640.1;Note=Original (2000) note: Cj0492%2C rpsG%2C 30S ribosomal protein S7%2C len: 156 aa%3B highly similar to many e.g. RS7_ECOLI 30S ribosomal protein S7 (178 aa)%2C fasta scores%3B opt: 619 z-score: 1114.1 E(): 0%2C 58.1%25 identity in 155 aa overlap. 69.9%25 identity to HP1196. Contains PS00052 Ribosomal protein S7 signature and Pfam match to entry PF00177 S7%2C Ribosomal protein S7%2C score 285.50%2C E-value 6.5e-82%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:385062;gbkey=CDS;gene=rpsG;inference=protein motif:Prosite:PS00052;locus_tag=Cj0492;product=30S ribosomal protein S7;protein_id=CAL34640.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	457683	458129	.	+	.	ID=id-Cj0492;Note=HMMPfam hit to PF00177%2C Ribosomal protein S7p/S5e%2Cscore 4.1e-74;gbkey=misc_feature;gene=rpsG;inference=protein motif:Pfam:PF00177;locus_tag=Cj0492
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	457737	457817	.	+	.	ID=id-Cj0492-2;Note=PS00052 Ribosomal protein S7 signature;gbkey=misc_feature;gene=rpsG;inference=protein motif:Prosite:PS00052;locus_tag=Cj0492
gi|15791399|ref|NC_002163.1|	EMBL	gene	458166	460241	.	+	.	ID=gene-Cj0493;Name=fusA;gbkey=Gene;gene=fusA;gene_biotype=protein_coding;locus_tag=Cj0493
gi|15791399|ref|NC_002163.1|	EMBL	CDS	458166	460241	.	+	0	ID=cds-CAL34641.1;Parent=gene-Cj0493;Dbxref=EnsemblGenomes-Gn:Cj0493,EnsemblGenomes-Tr:CAL34641,GOA:Q9PI16,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR004540,InterPro:IPR005225,InterPro:IPR005517,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR027417,NCBI_GP:CAL34641.1;Name=CAL34641.1;Note=Original (2000) note: Cj0493%2C fusA%2C elongation factor G%2C len: 691 aa%3B highly similar to many e.g. EFG_ECOLI elongation factor G (EF-G) (703 aa)%2C fasta scores%3B opt: 2979 z-score: 3278.1 E(): 0%2C 65.1%25 identity in 702 aa overlap. 80.3%25 identity to HP1195. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00301 GTP-binding elongation factors signature and Pfam matches to entry PF00009 GTP_EFTU%2C Elongation factor Tu family (contains ATP/GTP binding P-loop)%2C score 704.00%2C E-value 6.9e-208%2C and to entry PF00679 EFG_C%2C Elongation factor G C-terminus%2C score 387.40%2C E-value 1.4e-112%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Literature search identified paper linking protein to glycoprotein (PMID:12186869). Functional classification - Protein translation and modification%3B~PMID:8282687%2C PMID:12186869;gbkey=CDS;gene=fusA;inference=protein motif:Prosite:PS00301;locus_tag=Cj0493;product=elongation factor G;protein_id=CAL34641.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	458187	459014	.	+	.	ID=id-Cj0493;Note=HMMPfam hit to PF00009%2C Elongation factor Tu GTP binding domain%2C score 5.8e-118;gbkey=misc_feature;gene=fusA;inference=protein motif:Pfam:PF00009;locus_tag=Cj0493
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	458214	458237	.	+	.	ID=id-Cj0493-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=fusA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0493
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	458316	458363	.	+	.	ID=id-Cj0493-3;Note=PS00301 GTP-binding elongation factors signature;gbkey=misc_feature;gene=fusA;inference=protein motif:Prosite:PS00301;locus_tag=Cj0493
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	459129	459332	.	+	.	ID=id-Cj0493-4;Note=HMMPfam hit to PF03144%2C Elongation factor Tu domain%2C score 1.2e-17;gbkey=misc_feature;gene=fusA;inference=protein motif:Pfam:PF03144;locus_tag=Cj0493
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	459594	459953	.	+	.	ID=id-Cj0493-5;Note=HMMPfam hit to PF03764%2C Elongation factor G%2C domain IV%2C score 1.6e-75;gbkey=misc_feature;gene=fusA;inference=protein motif:Pfam:PF03764;locus_tag=Cj0493
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	459957	460220	.	+	.	ID=id-Cj0493-6;Note=HMMPfam hit to PF00679%2C Elongation factor G C-terminus%2C score 1.1e-53;gbkey=misc_feature;gene=fusA;inference=protein motif:Pfam:PF00679;locus_tag=Cj0493
gi|15791399|ref|NC_002163.1|	EMBL	gene	460270	460346	.	+	.	ID=gene-tRNA-Arg;Name=tRNA-Arg;gbkey=Gene;gene=tRNA-Arg;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	460270	460346	.	+	.	ID=rna-tRNA-Arg;Parent=gene-tRNA-Arg;Note=tRNA Arg anticodon CCT%2C Cove score 69.48;gbkey=tRNA;gene=tRNA-Arg;product=tRNA-Arg
gi|15791399|ref|NC_002163.1|	EMBL	exon	460270	460346	.	+	.	ID=exon-tRNA-Arg-1;Parent=rna-tRNA-Arg;Note=tRNA Arg anticodon CCT%2C Cove score 69.48;gbkey=tRNA;gene=tRNA-Arg;product=tRNA-Arg
gi|15791399|ref|NC_002163.1|	EMBL	gene	460364	460513	.	+	.	ID=gene-Cj0494;Name=Cj0494;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0494
gi|15791399|ref|NC_002163.1|	EMBL	CDS	460364	460513	.	+	0	ID=cds-CAL34642.1;Parent=gene-Cj0494;Dbxref=EnsemblGenomes-Gn:Cj0494,EnsemblGenomes-Tr:CAL34642,UniProtKB/TrEMBL:Q0PB19,NCBI_GP:CAL34642.1;Name=CAL34642.1;Note=Original (2000) note: Cj0494%2C small hydrophobic protein%2C len: 49 aa%3B no Hp match%3B~Updated (2006) note: Product function modified to more specific family member based on SignalP 2.0 HMM results. Putative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;locus_tag=Cj0494;product=putative exporting protein;protein_id=CAL34642.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	460519	461220	.	+	.	ID=gene-Cj0495;Name=Cj0495;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0495
gi|15791399|ref|NC_002163.1|	EMBL	CDS	460519	461220	.	+	0	ID=cds-CAL34643.1;Parent=gene-Cj0495;Dbxref=EnsemblGenomes-Gn:Cj0495,EnsemblGenomes-Tr:CAL34643,GOA:Q0PB18,InterPro:IPR002052,InterPro:IPR007848,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PB18,NCBI_GP:CAL34643.1;Name=CAL34643.1;Note=Original (2000) note: Cj0495%2C unknown%2C len: 233 aa%3B some simillarity to hypothetical proteins e.g. YABB_BACSU (247 aa)%2C fasta scores%3B opt: 295 z-score: 352.0 E(): 2.6e-12%2C 23.9%25 identity in 230 aa overlap. 36.9%25 identity to HP1504. Contains PS00092 N-6 Adenine-specific DNA methylases signature%3B~Updated (2006) note: Pfam domain PF05175 methyltransferase small domain and PF08242 Methyltransferase domain identified within CDS. Members of this family are SAM dependent methyltransferases. Prosite domain PS50193 SAM_BIND%2C SAM (and some other nucleotide) binding motif also identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Misc%3B~PMID:9873033;gbkey=CDS;inference=protein motif:Prosite:PS50193;locus_tag=Cj0495;product=putative methyltransferase domain protein;protein_id=CAL34643.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	460822	460842	.	+	.	ID=id-Cj0495;Note=PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00092;locus_tag=Cj0495
gi|15791399|ref|NC_002163.1|	EMBL	gene	461210	461584	.	+	.	ID=gene-Cj0496;Name=Cj0496;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0496
gi|15791399|ref|NC_002163.1|	EMBL	CDS	461210	461584	.	+	0	ID=cds-CAL34644.1;Parent=gene-Cj0496;Dbxref=EnsemblGenomes-Gn:Cj0496,EnsemblGenomes-Tr:CAL34644,InterPro:IPR005358,UniProtKB/TrEMBL:Q0PB17,NCBI_GP:CAL34644.1;Name=CAL34644.1;Note=Original (2000) note: Cj0496%2C unknown%2C len: 124 aa%3B similar to hypothetical proteins e.g. TR:O59308 (EMBL:AB009522) Pyrococcus horikoshii PHAV002 (141 aa)%2Cfasta scores%3B opt: 154 z-score: 270.6 E(): 8.8e-08%2C30.1%25 identity in 113 aa overlap. 47.5%25 identity to HP0274%3B~Updated (2006) note: Pfam domain PF03692 Uncharacterised protein family (UPF0153) identified within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF03692;locus_tag=Cj0496;product=conserved hypothetical protein Cj0496;protein_id=CAL34644.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	461249	461575	.	+	.	ID=id-Cj0496;Note=HMMPfam hit to PF03692%2C Uncharacterised protein family (UPF0153)%2C score 1.4e-32;gbkey=misc_feature;inference=protein motif:Pfam:PF03692;locus_tag=Cj0496
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	461570	461581	.	+	.	ID=id-Cj0496-2;Note=PS00294 Prenyl group binding site (CAAX box);gbkey=misc_feature;inference=protein motif:Prosite:PS00294;locus_tag=Cj0496
gi|15791399|ref|NC_002163.1|	EMBL	gene	461557	462834	.	+	.	ID=gene-Cj0497;Name=Cj0497;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0497
gi|15791399|ref|NC_002163.1|	EMBL	CDS	461557	462834	.	+	0	ID=cds-CAL34645.1;Parent=gene-Cj0497;Dbxref=EnsemblGenomes-Gn:Cj0497,EnsemblGenomes-Tr:CAL34645,InterPro:IPR011990,UniProtKB/TrEMBL:Q0PB16,NCBI_GP:CAL34645.1;Name=CAL34645.1;Note=Original (2000) note: Cj0497%2C probable lipoprotein%2Clen: 425 aa%3B some similarity to hypothetical prteins e.g. TR:O67021 (EMBL:AE000710) Aquifex aeolicus AQ_854 (545 aa)%2C fasta scores%3B opt: 266 z-score: 326.7 E(): 6.7e-11%2C29.1%25 identity in 412 aa overlap. 26.7%25 identity to HP0275 (misannotated as ATP-dependent nuclease (addB)). Contains N-terminal signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0497;product=putative lipoprotein;protein_id=CAL34645.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	461569	461637	.	+	.	ID=id-Cj0497;Note=1 probable transmembrane helix predicted for Cj0497 by TMHMM2.0 at aa 5-27;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0497
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	461575	461607	.	+	.	ID=id-Cj0497-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0497
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	461965	462066	.	+	.	ID=id-Cj0497-3;Note=HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 2.3;gbkey=misc_feature;inference=protein motif:Pfam:PF07719;locus_tag=Cj0497
gi|15791399|ref|NC_002163.1|	EMBL	gene	462831	463607	.	+	.	ID=gene-Cj0498;Name=trpC;gbkey=Gene;gene=trpC;gene_biotype=protein_coding;locus_tag=Cj0498
gi|15791399|ref|NC_002163.1|	EMBL	CDS	462831	463607	.	+	0	ID=cds-CAL34646.1;Parent=gene-Cj0498;Dbxref=EnsemblGenomes-Gn:Cj0498,EnsemblGenomes-Tr:CAL34646,GOA:Q9PI11,InterPro:IPR001468,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR013798,NCBI_GP:CAL34646.1;Name=CAL34646.1;Note=Original (2000) note: Cj0498%2C trpC%2C probable indole-3-glycerol phosphate synthase%2C len: 258 aa%3B similar to many e.g. TRPC_PSEAE indole-3-glycerol phosphate synthase (EC 4.1.1.48) (278 aa)%2C fasta scores%3B opt: 603 z-score: 921.4 E(): 0%2C 40.8%25 identity in 260 aa overlap. 37.6%25 identity to N-terminus of HP1279. Contains PS00614 Indole-3-glycerol phosphate synthase signature and Pfam match to entry PF00218 IGPS%2C Indole-3-glycerol phosphate synthases%2C score 360.30%2C E-value 2.1e-104%3B~Updated (2006) note: Characterised within Pseudomonas aeruginosa with acceptable identity score. Putative not added to product function. Functional classification - Amino acid biosynthesis - Aromatic amino acid family%3B~PMID:2105306;gbkey=CDS;gene=trpC;inference=protein motif:Prosite:PS00614;locus_tag=Cj0498;product=indole-3-glycerol phosphate synthase;protein_id=CAL34646.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	462834	463601	.	+	.	ID=id-Cj0498;Note=HMMPfam hit to PF00218%2C Indole-3-glycerol phosphate synthase%2C score 2.7e-106;gbkey=misc_feature;gene=trpC;inference=protein motif:Pfam:PF00218;locus_tag=Cj0498
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	462987	463031	.	+	.	ID=id-Cj0498-2;Note=PS00614 Indole-3-glycerol phosphate synthase signature;gbkey=misc_feature;gene=trpC;inference=protein motif:Prosite:PS00614;locus_tag=Cj0498
gi|15791399|ref|NC_002163.1|	EMBL	gene	463617	464102	.	+	.	ID=gene-Cj0499;Name=Cj0499;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0499
gi|15791399|ref|NC_002163.1|	EMBL	CDS	463617	464102	.	+	0	ID=cds-CAL34647.1;Parent=gene-Cj0499;Dbxref=EnsemblGenomes-Gn:Cj0499,EnsemblGenomes-Tr:CAL34647,GOA:Q0PB14,InterPro:IPR001310,InterPro:IPR011146,UniProtKB/TrEMBL:Q0PB14,NCBI_GP:CAL34647.1;Name=CAL34647.1;Note=Original (2000) note: Cj0499%2C unknown%2C len: 161 aa%3B similar to many members of the HIT family e.g. HIT_BACSU HIT protein (145 aa)%2C fasta scores%3B opt: 176 z-score: 274.7 E(): 5.2e-08%2C 26.1%25 identity in 111 aa overlap. 42.6%25 identity to HP0741. Contains Pfam match to entry PF01230 HIT%2C HIT family%2C score 19.90%2C E-value 3.6e-06%3B~Updated (2006) note: Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF01230;locus_tag=Cj0499;product=putative histidine triad (HIT) family protein;protein_id=CAL34647.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	463674	464000	.	+	.	ID=id-Cj0499;Note=HMMPfam hit to PF01230%2C HIT domain%2C score 7.1e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF01230;locus_tag=Cj0499
gi|15791399|ref|NC_002163.1|	EMBL	gene	464092	465090	.	+	.	ID=gene-Cj0500;Name=Cj0500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0500
gi|15791399|ref|NC_002163.1|	EMBL	CDS	464092	465090	.	+	0	ID=cds-CAL34648.1;Parent=gene-Cj0500;Dbxref=EnsemblGenomes-Gn:Cj0500,EnsemblGenomes-Tr:CAL34648,GOA:Q0PB13,InterPro:IPR001763,InterPro:IPR017582,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PB13,NCBI_GP:CAL34648.1;Name=CAL34648.1;Note=Original (2000) note: Cj0500%2C probable ATP/GTP binding protein%2C len: 332 aa%3B similar to e.g. YBBB_ECOLI (364 aa)%2C fasta scores%3B opt: 348 z-score: 507.3 E(): 5.8e-21%2C 31.3%25 identity in 243 aa overlap. No Hp match. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Prosite domain PS50206 RHODANESE_3%2C Rhodanese domain profile also identified within CDS. Rhodanese%2C a sulphurtransferase involved in cyanide detoxification shares evolutionary relationship with a large family of proteins. This domain is found as a single copy in other proteins%2C including phosphatases and ubiquitin C-terminal hydrolases. Product modified to new function based on motif identification. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Prosite:PS50206;locus_tag=Cj0500;product=putative rhodanese-like domain protein;protein_id=CAL34648.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	464524	464547	.	+	.	ID=id-Cj0500;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0500
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	465376	466269	.	+	.	ID=gene-Cj0501;Name=Cj0501;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0501;part=1/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	466273	466393	.	+	.	ID=gene-Cj0501;Name=Cj0501;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0501;part=2/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	466395	466495	.	+	.	ID=gene-Cj0501;Name=Cj0501;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0501;part=3/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	466497	466598	.	+	.	ID=gene-Cj0501;Name=Cj0501;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0501;part=4/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	465376	465453	.	+	0	ID=cds-Cj0501;Parent=gene-Cj0501;Dbxref=PSEUDO:CAL34649.1;Note=Original (2000) note: Cj0501%2C probable ammonium transporter pseudogene%3B len: 1114 bp%3B similar to amny e.g. NRGA_BACSU probable ammonium transporter (404 aa).There is at least one frameshift and one stop codon in this pseudogene. No Hp match. Contains PS01219 Ammonium transporters signature and Pfam match to entry PF00909 Ammonium_transp%2C Ammonium Transporter Family%2C score 29.60%2CE-value 7.1e-12%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli and Bacillus subtilis with acceptable identity scores. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other%3B~PMID:12023896%2C PMID:10931328%2C PMID:15361618%2CPMID:14600241;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0501;product=pseudogene (ammonium transporter);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	465453	466124	.	+	0	ID=cds-Cj0501;Parent=gene-Cj0501;Dbxref=PSEUDO:CAL34649.1;Note=Original (2000) note: Cj0501%2C probable ammonium transporter pseudogene%3B len: 1114 bp%3B similar to amny e.g. NRGA_BACSU probable ammonium transporter (404 aa).There is at least one frameshift and one stop codon in this pseudogene. No Hp match. Contains PS01219 Ammonium transporters signature and Pfam match to entry PF00909 Ammonium_transp%2C Ammonium Transporter Family%2C score 29.60%2CE-value 7.1e-12%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli and Bacillus subtilis with acceptable identity scores. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other%3B~PMID:12023896%2C PMID:10931328%2C PMID:15361618%2CPMID:14600241;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0501;product=pseudogene (ammonium transporter);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	466123	466269	.	+	0	ID=cds-Cj0501;Parent=gene-Cj0501;Dbxref=PSEUDO:CAL34649.1;Note=Original (2000) note: Cj0501%2C probable ammonium transporter pseudogene%3B len: 1114 bp%3B similar to amny e.g. NRGA_BACSU probable ammonium transporter (404 aa).There is at least one frameshift and one stop codon in this pseudogene. No Hp match. Contains PS01219 Ammonium transporters signature and Pfam match to entry PF00909 Ammonium_transp%2C Ammonium Transporter Family%2C score 29.60%2CE-value 7.1e-12%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli and Bacillus subtilis with acceptable identity scores. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other%3B~PMID:12023896%2C PMID:10931328%2C PMID:15361618%2CPMID:14600241;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0501;product=pseudogene (ammonium transporter);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	466273	466393	.	+	0	ID=cds-Cj0501;Parent=gene-Cj0501;Dbxref=PSEUDO:CAL34649.1;Note=Original (2000) note: Cj0501%2C probable ammonium transporter pseudogene%3B len: 1114 bp%3B similar to amny e.g. NRGA_BACSU probable ammonium transporter (404 aa).There is at least one frameshift and one stop codon in this pseudogene. No Hp match. Contains PS01219 Ammonium transporters signature and Pfam match to entry PF00909 Ammonium_transp%2C Ammonium Transporter Family%2C score 29.60%2CE-value 7.1e-12%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli and Bacillus subtilis with acceptable identity scores. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other%3B~PMID:12023896%2C PMID:10931328%2C PMID:15361618%2CPMID:14600241;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0501;product=pseudogene (ammonium transporter);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	466395	466495	.	+	2	ID=cds-Cj0501;Parent=gene-Cj0501;Dbxref=PSEUDO:CAL34649.1;Note=Original (2000) note: Cj0501%2C probable ammonium transporter pseudogene%3B len: 1114 bp%3B similar to amny e.g. NRGA_BACSU probable ammonium transporter (404 aa).There is at least one frameshift and one stop codon in this pseudogene. No Hp match. Contains PS01219 Ammonium transporters signature and Pfam match to entry PF00909 Ammonium_transp%2C Ammonium Transporter Family%2C score 29.60%2CE-value 7.1e-12%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli and Bacillus subtilis with acceptable identity scores. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other%3B~PMID:12023896%2C PMID:10931328%2C PMID:15361618%2CPMID:14600241;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0501;product=pseudogene (ammonium transporter);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	466497	466598	.	+	0	ID=cds-Cj0501;Parent=gene-Cj0501;Dbxref=PSEUDO:CAL34649.1;Note=Original (2000) note: Cj0501%2C probable ammonium transporter pseudogene%3B len: 1114 bp%3B similar to amny e.g. NRGA_BACSU probable ammonium transporter (404 aa).There is at least one frameshift and one stop codon in this pseudogene. No Hp match. Contains PS01219 Ammonium transporters signature and Pfam match to entry PF00909 Ammonium_transp%2C Ammonium Transporter Family%2C score 29.60%2CE-value 7.1e-12%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli and Bacillus subtilis with acceptable identity scores. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Other%3B~PMID:12023896%2C PMID:10931328%2C PMID:15361618%2CPMID:14600241;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0501;product=pseudogene (ammonium transporter);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	465388	465453	.	+	.	ID=id-Cj0501;Note=9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27%2C 40-62%2C 94-116%2C 121-143%2C158-180%2C 193-212%2C 222-244%2C 274-296 and 355-377;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0501;part=1/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	465453	465455	.	+	.	ID=id-Cj0501;Note=9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27%2C 40-62%2C 94-116%2C 121-143%2C158-180%2C 193-212%2C 222-244%2C 274-296 and 355-377;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0501;part=2/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	465492	465560	.	+	.	ID=id-Cj0501;Note=9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27%2C 40-62%2C 94-116%2C 121-143%2C158-180%2C 193-212%2C 222-244%2C 274-296 and 355-377;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0501;part=3/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	465654	465722	.	+	.	ID=id-Cj0501;Note=9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27%2C 40-62%2C 94-116%2C 121-143%2C158-180%2C 193-212%2C 222-244%2C 274-296 and 355-377;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0501;part=4/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	465735	465803	.	+	.	ID=id-Cj0501;Note=9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27%2C 40-62%2C 94-116%2C 121-143%2C158-180%2C 193-212%2C 222-244%2C 274-296 and 355-377;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0501;part=5/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	465846	465914	.	+	.	ID=id-Cj0501;Note=9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27%2C 40-62%2C 94-116%2C 121-143%2C158-180%2C 193-212%2C 222-244%2C 274-296 and 355-377;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0501;part=6/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	465951	466010	.	+	.	ID=id-Cj0501;Note=9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27%2C 40-62%2C 94-116%2C 121-143%2C158-180%2C 193-212%2C 222-244%2C 274-296 and 355-377;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0501;part=7/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	466038	466106	.	+	.	ID=id-Cj0501;Note=9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27%2C 40-62%2C 94-116%2C 121-143%2C158-180%2C 193-212%2C 222-244%2C 274-296 and 355-377;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0501;part=8/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	466192	466260	.	+	.	ID=id-Cj0501;Note=9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27%2C 40-62%2C 94-116%2C 121-143%2C158-180%2C 193-212%2C 222-244%2C 274-296 and 355-377;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0501;part=9/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	466439	466495	.	+	.	ID=id-Cj0501;Note=9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27%2C 40-62%2C 94-116%2C 121-143%2C158-180%2C 193-212%2C 222-244%2C 274-296 and 355-377;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0501;part=10/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	466497	466508	.	+	.	ID=id-Cj0501;Note=9 probable transmembrane helices predicted for Cj0501 by TMHMM2.0 at aa 5-27%2C 40-62%2C 94-116%2C 121-143%2C158-180%2C 193-212%2C 222-244%2C 274-296 and 355-377;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0501;part=11/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	465394	465453	.	+	.	ID=id-Cj0501-2;Note=HMMPfam hit to PF00909%2C Ammonium Transporter Family%2C score 7.1e-121;gbkey=misc_feature;inference=protein motif:Pfam:PF00909;is_ordered=true;locus_tag=Cj0501;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	465453	466123	.	+	.	ID=id-Cj0501-2;Note=HMMPfam hit to PF00909%2C Ammonium Transporter Family%2C score 7.1e-121;gbkey=misc_feature;inference=protein motif:Pfam:PF00909;is_ordered=true;locus_tag=Cj0501;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	466124	466269	.	+	.	ID=id-Cj0501-2;Note=HMMPfam hit to PF00909%2C Ammonium Transporter Family%2C score 7.1e-121;gbkey=misc_feature;inference=protein motif:Pfam:PF00909;is_ordered=true;locus_tag=Cj0501;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	466273	466393	.	+	.	ID=id-Cj0501-2;Note=HMMPfam hit to PF00909%2C Ammonium Transporter Family%2C score 7.1e-121;gbkey=misc_feature;inference=protein motif:Pfam:PF00909;is_ordered=true;locus_tag=Cj0501;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	466395	466495	.	+	.	ID=id-Cj0501-2;Note=HMMPfam hit to PF00909%2C Ammonium Transporter Family%2C score 7.1e-121;gbkey=misc_feature;inference=protein motif:Pfam:PF00909;is_ordered=true;locus_tag=Cj0501;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	466497	466586	.	+	.	ID=id-Cj0501-2;Note=HMMPfam hit to PF00909%2C Ammonium Transporter Family%2C score 7.1e-121;gbkey=misc_feature;inference=protein motif:Pfam:PF00909;is_ordered=true;locus_tag=Cj0501;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	466660	467571	.	-	.	ID=gene-Cj0503c;Name=hemH;gbkey=Gene;gene=hemH;gene_biotype=protein_coding;locus_tag=Cj0503c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	466660	467571	.	-	0	ID=cds-CAL34650.1;Parent=gene-Cj0503c;Dbxref=EnsemblGenomes-Gn:Cj0503c,EnsemblGenomes-Tr:CAL34650,GOA:Q9PI08,InterPro:IPR001015,InterPro:IPR019772,NCBI_GP:CAL34650.1;Name=CAL34650.1;Note=Original (2000) note: Cj0503c%2C hemH%2C probable ferrochelatase%2C len: 303 aa%3B similar to e.g. HEMZ_SYNY3 probable ferrochelatase (EC 4.99.1.1) (387 aa)%2C fasta scores%3B opt: 299 z-score: 794.5 E(): 0%2C31.4%25 identity in 318 aa overlap%2C and to the eukaryotic ferrochelatases e.g. HEMZ_BOVIN ferrochelatase precursor (EC 4.99.1.1) (416 aa)%2C fasta scores%3B opt: 348 z-score: 683.2 E(): 9.2e-31%2C30.8%25 identity in 292 aa overlap. 40.2%25 identity to HP0376. Contains PS00534 Ferrochelatase signature and Pfam match to entry PF00762 Ferrochelatase%2C Ferrochelatase%2Cscore 257.40%2C E-value 1.9e-73%3B~Updated (2006) note: No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Heme%3B~PMID:8056770;gbkey=CDS;gene=hemH;inference=protein motif:Prosite:PS00534;locus_tag=Cj0503c;product=putative ferrochelatase;protein_id=CAL34650.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	466663	467562	.	-	.	ID=id-Cj0503c;Note=HMMPfam hit to PF00762%2C Ferrochelatase%2C score 3e-72;gbkey=misc_feature;gene=hemH;inference=protein motif:Pfam:PF00762;locus_tag=Cj0503c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	466978	467034	.	-	.	ID=id-Cj0503c-2;Note=PS00534 Ferrochelatase signature;gbkey=misc_feature;gene=hemH;inference=protein motif:Prosite:PS00534;locus_tag=Cj0503c
gi|15791399|ref|NC_002163.1|	EMBL	gene	467568	468434	.	-	.	ID=gene-Cj0504c;Name=Cj0504c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0504c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	467568	468434	.	-	0	ID=cds-CAL34651.1;Parent=gene-Cj0504c;Dbxref=EnsemblGenomes-Gn:Cj0504c,EnsemblGenomes-Tr:CAL34651,GOA:Q0PB11,InterPro:IPR000683,InterPro:IPR016040,UniProtKB/TrEMBL:Q0PB11,NCBI_GP:CAL34651.1;Name=CAL34651.1;Note=Original (2000) note: Cj0504c%2C unknown%2C len: 288 aa%3B similar to hypothetical proteins e.g. YISS_BACSU 342 aa)%2C fasta scores%3B opt: 224 z-score: 359.9 E(): 9.4e-13%2C28.1%25 identity in 192 aa overlap. 26.4%25 identity to HP0679%3B~Updated (2006) note: Pfam domain PF01408 Oxidoreductase family%2C NAD-binding Rossmann fold identified within CDS. Product function modified due to motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF01408;locus_tag=Cj0504c;product=putative oxidoreductase;protein_id=CAL34651.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	468090	468434	.	-	.	ID=id-Cj0504c;Note=HMMPfam hit to PF01408%2C Oxidoreductase family%2CNAD-binding Rossm%2C score 1.2e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF01408;locus_tag=Cj0504c
gi|15791399|ref|NC_002163.1|	EMBL	gene	468439	469512	.	-	.	ID=gene-Cj0505c;Name=Cj0505c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0505c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	468439	469512	.	-	0	ID=cds-CAL34652.1;Parent=gene-Cj0505c;Dbxref=EnsemblGenomes-Gn:Cj0505c,EnsemblGenomes-Tr:CAL34652,GOA:Q0PB10,InterPro:IPR000653,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0PB10,NCBI_GP:CAL34652.1;Name=CAL34652.1;Note=Updated (2006) note: Some characterisation work carried out within Bacillus stearothermophilus with acceptable identity score. Putative kept within product function%3B~Original (2000) note: Cj0505c%2C possible aminotransferase%2C len: 357 aa%3B similar to members of the degT family e.g. DEGT_BACST (372 aa)%2C fasta scores%3B opt: 857 z-score: 1253.3 E(): 0%2C 38.8%25 identity in 356 aa overlap. No Hp ortholog. Contains Pfam match to entry PF01041 DegT_DnrJ_EryC1%2C DegT/DnrJ/EryC1/StrS family%2Cscore 441.40%2C E-value 7.9e-129%3B~PMID:2104607;gbkey=CDS;inference=protein motif:Pfam:PF01041;locus_tag=Cj0505c;product=putative aminotransferase (degT family). Functional classification-Misc;protein_id=CAL34652.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	468445	469482	.	-	.	ID=id-Cj0505c;Note=HMMPfam hit to PF01041%2C DegT/DnrJ/EryC1/StrS aminotransferase%2C score 4.8e-130;gbkey=misc_feature;inference=protein motif:Pfam:PF01041;locus_tag=Cj0505c
gi|15791399|ref|NC_002163.1|	EMBL	gene	469627	472155	.	+	.	ID=gene-Cj0506;Name=alaS;gbkey=Gene;gene=alaS;gene_biotype=protein_coding;locus_tag=Cj0506
gi|15791399|ref|NC_002163.1|	EMBL	CDS	469627	472155	.	+	0	ID=cds-CAL34653.1;Parent=gene-Cj0506;Dbxref=EnsemblGenomes-Gn:Cj0506,EnsemblGenomes-Tr:CAL34653,GOA:Q9PI05,InterPro:IPR002318,InterPro:IPR003156,InterPro:IPR009000,InterPro:IPR012947,InterPro:IPR018162,InterPro:IPR018163,InterPro:IPR018164,InterPro:IPR018165,InterPro:IPR023033,NCBI_GP:CAL34653.1;Name=CAL34653.1;Note=Original (2000) note: Cj0506%2C alaS%2C alanyl-tRNA synthetase%2C len: 842 aa%3B similar to many e.g. SYA_ECOLI alanyl-tRNA synthetase (EC 6.1.1.7) (876 aa)%2C fasta scores%3B opt: 1793 z-score: 2324.1 E(): 0%2C 47.9%25 identity in 870 aa overlap. 58.9%25 identity to HP1241. Contains PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2%3B~Updated (2006) note: Pfam domains PF01411 tRNA synthetases class II (A) identified%2C PF07973 Threonyl and Alanyl tRNA synthetase second additional domain and PF02272 DHHA1 domain all within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:6256345;gbkey=CDS;gene=alaS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0506;product=alanyl-tRNA synthetase;protein_id=CAL34653.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	469630	471693	.	+	.	ID=id-Cj0506;Note=HMMPfam hit to PF01411%2C tRNA synthetases class II (A)%2C score 0;gbkey=misc_feature;gene=alaS;inference=protein motif:Pfam:PF01411;locus_tag=Cj0506
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	470290	470319	.	+	.	ID=id-Cj0506-2;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=alaS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0506
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	471928	472134	.	+	.	ID=id-Cj0506-3;Note=HMMPfam hit to PF02272%2C DHHA1 domain%2C score 1.6e-16;gbkey=misc_feature;gene=alaS;inference=protein motif:Pfam:PF02272;locus_tag=Cj0506
gi|15791399|ref|NC_002163.1|	EMBL	gene	472155	472706	.	+	.	ID=gene-Cj0507;Name=maf;gbkey=Gene;gene=maf;gene_biotype=protein_coding;locus_tag=Cj0507
gi|15791399|ref|NC_002163.1|	EMBL	CDS	472155	472706	.	+	0	ID=cds-CAL34654.1;Parent=gene-Cj0507;Dbxref=EnsemblGenomes-Gn:Cj0507,EnsemblGenomes-Tr:CAL34654,GOA:Q9PI04,InterPro:IPR003697,InterPro:IPR029001,NCBI_GP:CAL34654.1;Name=CAL34654.1;Note=Original (2000) note: Cj0507%2C maf%2C maf homolog%2Clen: 183 aa%3B similar to B. subtilis MAF_BACSU MAF protein (possibly involved in septum formation) (189 aa)%2C fasta scores%3B opt: 236 z-score: 428.7 E(): 1.4e-16%2C 28.4%25 identity in 183 aa overlap. 36.5%25 identity to HP1240%3B~Updated (2006) note: Pfam domains PF02545 Maf-like protein all within CDS. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Product function changed from MAF homolog to Maf-like protein. Functional classification - Cell division%3B~PMID:8387996;gbkey=CDS;gene=maf;inference=protein motif:Pfam:PF02545;locus_tag=Cj0507;product=Maf-like protein;protein_id=CAL34654.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	472155	472703	.	+	.	ID=id-Cj0507;Note=HMMPfam hit to PF02545%2C Maf-like protein%2C score 6e-22;gbkey=misc_feature;gene=maf;inference=protein motif:Pfam:PF02545;locus_tag=Cj0507
gi|15791399|ref|NC_002163.1|	EMBL	gene	472703	474634	.	+	.	ID=gene-Cj0508;Name=pbpA;gbkey=Gene;gene=pbpA;gene_biotype=protein_coding;locus_tag=Cj0508
gi|15791399|ref|NC_002163.1|	EMBL	CDS	472703	474634	.	+	0	ID=cds-CAL34655.1;Parent=gene-Cj0508;Dbxref=EnsemblGenomes-Gn:Cj0508,EnsemblGenomes-Tr:CAL34655,GOA:Q0PB07,InterPro:IPR001264,InterPro:IPR001460,InterPro:IPR011816,InterPro:IPR012338,InterPro:IPR023346,UniProtKB/TrEMBL:Q0PB07,NCBI_GP:CAL34655.1;Name=CAL34655.1;Note=Original (2000) note: Cj0508%2C pbpA%2C probable penicillin-binding protein%2C len: 643 aa%3B similar to many e.g. PBPB_ECOLI penicillin-binding protein 1B (PBP-1B) (844 aa)%2C fasta scores%3B opt: 774 z-score: 915.8 E(): 0%2C32.5%25 identity in 616 aa overlap. 48.0%25 identity to HP0597. Also similar to Cj0525c (22.9%25 identity in 407 aa overlap). Contains Pfam matches to entry PF00912 Transglycosyl%2C Transglycosylase%2C score 299.40%2C E-value 4.5e-86 and Pfam match to entry PF00905 Transpeptidase%2CPenicillin binding protein transpeptidase domain%2C score 103.80%2C E-value 3.3e-27%3B~Updated (2006) note: Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification -Murein sacculus and peptidoglycan%3B~PMID:11181392%2C PMID:9841666%2C PMID:8335642;gbkey=CDS;gene=pbpA;inference=protein motif:Pfam:PF00912;locus_tag=Cj0508;product=penicillin-binding protein;protein_id=CAL34655.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	472721	472789	.	+	.	ID=id-Cj0508;Note=1 probable transmembrane helix predicted for Cj0508 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;gene=pbpA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0508
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	472835	473341	.	+	.	ID=id-Cj0508-2;Note=HMMPfam hit to PF00912%2C Transglycosylase%2C score 2.2e-82;gbkey=misc_feature;gene=pbpA;inference=protein motif:Pfam:PF00912;locus_tag=Cj0508
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	473660	474478	.	+	.	ID=id-Cj0508-3;Note=HMMPfam hit to PF00905%2C Penicillin binding protein transpeptid%2C score 1.1e-33;gbkey=misc_feature;gene=pbpA;inference=protein motif:Pfam:PF00905;locus_tag=Cj0508
gi|15791399|ref|NC_002163.1|	EMBL	gene	474662	477235	.	-	.	ID=gene-Cj0509c;Name=clpB;gbkey=Gene;gene=clpB;gene_biotype=protein_coding;locus_tag=Cj0509c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	474662	477235	.	-	0	ID=cds-CAL34656.1;Parent=gene-Cj0509c;Dbxref=EnsemblGenomes-Gn:Cj0509c,EnsemblGenomes-Tr:CAL34656,GOA:Q9PI02,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004176,InterPro:IPR018368,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,InterPro:IPR028299,NCBI_GP:CAL34656.1;Name=CAL34656.1;Note=Original (2000) note: Cj0509c%2C clpB%2C ATP-dependent CLP protease ATP-binding subunit%2C len: 857 aa%3B 98.9%25 identical to C. jejuni TR:O69287 (EMBL:Y13333) and similar to many e.g. CLAA_LYCES ATP-dependent CLP protease ATP-binding subunit (926 aa)%2C fasta scores%3B opt: 1130 z-score: 2439.8 E(): 0%2C 45.0%25 identity in 845 aa overlap. 61.2%25 identity to HP0264. Also simlar to C. jejuni clpA (Cj1108)%3B 36.6%25 identity in 836 aa overlap. Contains 2x PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00870 and PS00871 Chaperonins clpA/B signatures 1 and 2%2C and Pfam match to entry PF00495 clpA_B%2C Chaperonins clpA/B%2C score 1257.60%2C E-value 0%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Putative not added to product function. Functional classification - Chaperones%2Cchaperonins%2C heat shock%3B~PMID:10196475;gbkey=CDS;gene=clpB;inference=protein motif:Prosite:PS00871;locus_tag=Cj0509c;product=ATP-dependent Clp protease ATP-binding subunit;protein_id=CAL34656.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	474785	475429	.	-	.	ID=id-Cj0509c;Note=HMMPfam hit to PF00004%2C ATPase family associated with various cellul%2C score 5.2e-05;gbkey=misc_feature;gene=clpB;inference=protein motif:Pfam:PF00004;locus_tag=Cj0509c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	474959	475441	.	-	.	ID=id-Cj0509c-2;Note=HMMPfam hit to PF07724%2C ATPase family associated with various cellul%2C score 3.2e-102;gbkey=misc_feature;gene=clpB;inference=protein motif:Pfam:PF07724;locus_tag=Cj0509c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	475280	475336	.	-	.	ID=id-Cj0509c-3;Note=PS00871 Chaperonins clpA/B signature 2;gbkey=misc_feature;gene=clpB;inference=protein motif:Prosite:PS00871;locus_tag=Cj0509c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	475391	475414	.	-	.	ID=id-Cj0509c-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=clpB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0509c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	476051	476632	.	-	.	ID=id-Cj0509c-5;Note=HMMPfam hit to PF00004%2C ATPase family associated with various cellul%2C score 7.4e-21;gbkey=misc_feature;gene=clpB;inference=protein motif:Pfam:PF00004;locus_tag=Cj0509c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	476318	476356	.	-	.	ID=id-Cj0509c-6;Note=PS00870 Chaperonins clpA/B signature 1;gbkey=misc_feature;gene=clpB;inference=protein motif:Prosite:PS00870;locus_tag=Cj0509c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	476594	476617	.	-	.	ID=id-Cj0509c-7;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=clpB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0509c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	476798	476947	.	-	.	ID=id-Cj0509c-8;Note=HMMPfam hit to PF02861%2C Clp amino terminal domain%2Cscore 0.0056;gbkey=misc_feature;gene=clpB;inference=protein motif:Pfam:PF02861;locus_tag=Cj0509c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	477023	477181	.	-	.	ID=id-Cj0509c-9;Note=HMMPfam hit to PF02861%2C Clp amino terminal domain%2Cscore 6.5e-11;gbkey=misc_feature;gene=clpB;inference=protein motif:Pfam:PF02861;locus_tag=Cj0509c
gi|15791399|ref|NC_002163.1|	EMBL	gene	477347	477637	.	-	.	ID=gene-Cj0510c;Name=Cj0510c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0510c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	477347	477637	.	-	0	ID=cds-CAL34657.1;Parent=gene-Cj0510c;Dbxref=EnsemblGenomes-Gn:Cj0510c,EnsemblGenomes-Tr:CAL34657,InterPro:IPR003735,UniProtKB/TrEMBL:Q0PB05,NCBI_GP:CAL34657.1;Name=CAL34657.1;Note=Original (2000) note: Cj0510c%2C unknown%2C len: 96 aa%3B similar to hypothetical proteins e.g. TR:O32222 (EMBL:Z99121) B. subtilis YVGZ protein (101 aa)%2C fasta scores%3B opt: 212 z-score: 338.9 E(): 1.4e-11%2C 40.0%25 identity in 95 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02583 Uncharacterised BCR%2C COG1937 identified within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02583;locus_tag=Cj0510c;product=conserved hypothetical protein Cj0510c;protein_id=CAL34657.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	477353	477535	.	-	.	ID=id-Cj0510c;Note=HMMPfam hit to PF02583%2C Uncharacterised BCR%2CCOG1937%2C score 2.1e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF02583;locus_tag=Cj0510c
gi|15791399|ref|NC_002163.1|	EMBL	gene	477755	479089	.	+	.	ID=gene-Cj0511;Name=Cj0511;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0511
gi|15791399|ref|NC_002163.1|	EMBL	CDS	477755	479089	.	+	0	ID=cds-CAL34658.1;Parent=gene-Cj0511;Dbxref=EnsemblGenomes-Gn:Cj0511,EnsemblGenomes-Tr:CAL34658,GOA:Q0PB04,InterPro:IPR001478,InterPro:IPR004447,InterPro:IPR005151,InterPro:IPR029045,UniProtKB/TrEMBL:Q0PB04,NCBI_GP:CAL34658.1;Name=CAL34658.1;Note=Original (2000) note: Cj0511%2C probable secreted protease%2C len: 444 aa%3B similar to many e.g. PRC_ECOLI tail-specific protease precursor (682 aa)%2C fasta scores%3B opt: 357 z-score: 500.2 E(): 1.4e-20%2C 29.9%25 identity in 388 aa overlap. 54.3%25 identity to HP1350. Contains possible N-terminal signal sequence and Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF).%2C score 52.00%2C E-value 1.3e-11%3B~Updated (2006) note: Pfam domain PF03572 Peptidase family S41 identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative kept within product function. Paper identified linking protein to glycoprotein (PMID:12186869). Functional classification - Protein translation and modification%3B~PMID:8576225%2C PMID:12186869;gbkey=CDS;inference=protein motif:Pfam:PF03572;locus_tag=Cj0511;product=putative secreted protease;protein_id=CAL34658.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	477788	477856	.	+	.	ID=id-Cj0511;Note=1 probable transmembrane helix predicted for Cj0511 by TMHMM2.0 at aa 12-34;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0511
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	478049	478285	.	+	.	ID=id-Cj0511-2;Note=HMMPfam hit to PF00595%2C PDZ domain (Also known as DHR or GLGF)%2C score 1.9e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00595;locus_tag=Cj0511
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	478376	478861	.	+	.	ID=id-Cj0511-3;Note=HMMPfam hit to PF03572%2C Peptidase family S41%2C score 7.9e-76;gbkey=misc_feature;inference=protein motif:Pfam:PF03572;locus_tag=Cj0511
gi|15791399|ref|NC_002163.1|	EMBL	gene	479091	479801	.	+	.	ID=gene-Cj0512;Name=purC;gbkey=Gene;gene=purC;gene_biotype=protein_coding;locus_tag=Cj0512
gi|15791399|ref|NC_002163.1|	EMBL	CDS	479091	479801	.	+	0	ID=cds-CAL34659.1;Parent=gene-Cj0512;Dbxref=EnsemblGenomes-Gn:Cj0512,EnsemblGenomes-Tr:CAL34659,GOA:Q9PHZ9,InterPro:IPR001636,InterPro:IPR013816,InterPro:IPR018236,InterPro:IPR028923,NCBI_GP:CAL34659.1;Name=CAL34659.1;Note=Original (2000) note: Cj0512%2C purC%2C probable phosphoribosylaminoimidazole-succinocarboxamide synthase%2Clen: 236 aa%3B highly similar to many e.g. PUR7_BACSU phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) (241 aa)%2C fasta scores%3B opt: 821 z-score: 1330.0 E(): 0%2C 53.0%25 identity in 234 aa overlap. No Hp match. Contains PS01057 SAICAR synthetase signature 1 and Pfam match to entry PF01259 SAICAR_synt%2C SAICAR synthetase%2C score 311.00%2C E-value 1.5e-89%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Purine ribonucleotide biosynthesis%3B~PMID:2495272%2C PMID:10071207;gbkey=CDS;gene=purC;inference=protein motif:Prosite:PS01057;locus_tag=Cj0512;product=phosphoribosylaminoimidazole-succinocarboxamide synthase;protein_id=CAL34659.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	479097	479795	.	+	.	ID=id-Cj0512;Note=HMMPfam hit to PF01259%2C SAICAR synthetase%2C score 1.6e-90;gbkey=misc_feature;gene=purC;inference=protein motif:Pfam:PF01259;locus_tag=Cj0512
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	479346	479390	.	+	.	ID=id-Cj0512-2;Note=PS01057 SAICAR synthetase signature 1;gbkey=misc_feature;gene=purC;inference=protein motif:Prosite:PS01057;locus_tag=Cj0512
gi|15791399|ref|NC_002163.1|	EMBL	gene	479810	480055	.	+	.	ID=gene-Cj0513;Name=purS;gbkey=Gene;gene=purS;gene_biotype=protein_coding;locus_tag=Cj0513
gi|15791399|ref|NC_002163.1|	EMBL	CDS	479810	480055	.	+	0	ID=cds-CAL34660.1;Parent=gene-Cj0513;Dbxref=EnsemblGenomes-Gn:Cj0513,EnsemblGenomes-Tr:CAL34660,InterPro:IPR003850,UniProtKB/TrEMBL:Q0PB02,NCBI_GP:CAL34660.1;Name=CAL34660.1;Note=Original (2000) note: Cj0513%2C unknown%2C len: 81 aa%3B similar to many e.g. YEXA_BACSU hypothetical 9.7 kd protein in PURC-PURL intergenic region (84 aa)%2C fasta scores%3B opt: 248 z-score: 331.6 E(): 3.6e-11%2C 48.1%25 identity in 79 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase identified within CDS. Product function modified to new function based on motif match. Characterisation work carried out within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification - Purine ribonucleotide biosynthesis%3B~PMID:15301532%2C PMID:10071207;gbkey=CDS;gene=purS;inference=protein motif:Pfam:PF02700;locus_tag=Cj0513;product=phosphoribosylformylglycinamidine (FGAM) synthase;protein_id=CAL34660.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	479810	480049	.	+	.	ID=id-Cj0513;Note=HMMPfam hit to PF02700%2CPhosphoribosylformylglycinamidine (FGAM) syn%2C score 1.3e-31;gbkey=misc_feature;gene=purS;inference=protein motif:Pfam:PF02700;locus_tag=Cj0513
gi|15791399|ref|NC_002163.1|	EMBL	gene	480057	480728	.	+	.	ID=gene-Cj0514;Name=purQ;gbkey=Gene;gene=purQ;gene_biotype=protein_coding;locus_tag=Cj0514
gi|15791399|ref|NC_002163.1|	EMBL	CDS	480057	480728	.	+	0	ID=cds-CAL34661.1;Parent=gene-Cj0514;Dbxref=EnsemblGenomes-Gn:Cj0514,EnsemblGenomes-Tr:CAL34661,GOA:Q9PHZ7,InterPro:IPR010075,InterPro:IPR017926,InterPro:IPR029062,NCBI_GP:CAL34661.1;Name=CAL34661.1;Note=Original (2000) note: Cj0514%2C purQ%2C probable phosphoribosylformylglycinamidine synthase I%2C len: 223 aa%3B PURQ_BACSU phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3) (227 aa)%2C fasta scores%3B opt: 701 z-score: 1168.8 E(): 0%2C 47.7%25 identity in 216 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF07685 CobB/CobQ-like glutamine amidotransferase domain and PF01965 DJ-1/PfpI family identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Purine ribonucleotide biosynthesis%3B~PMID:2495272%2C PMID:10784038%2C PMID:10071207;gbkey=CDS;gene=purQ;inference=protein motif:Pfam:PF07685;locus_tag=Cj0514;product=phosphoribosylformylglycinamidine synthase I;protein_id=CAL34661.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	480156	480647	.	+	.	ID=id-Cj0514;Note=HMMPfam hit to PF07685%2C CobB/CobQ-like glutamine amidotransferase do%2C score 0.002;gbkey=misc_feature;gene=purQ;inference=protein motif:Pfam:PF07685;locus_tag=Cj0514
gi|15791399|ref|NC_002163.1|	EMBL	gene	480700	481896	.	+	.	ID=gene-Cj0515;Name=Cj0515;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0515
gi|15791399|ref|NC_002163.1|	EMBL	CDS	480700	481896	.	+	0	ID=cds-CAL34662.1;Parent=gene-Cj0515;Dbxref=EnsemblGenomes-Gn:Cj0515,EnsemblGenomes-Tr:CAL34662,InterPro:IPR003646,UniProtKB/TrEMBL:Q0PB00,NCBI_GP:CAL34662.1;Name=CAL34662.1;Note=Original (2000) note: Cj0515%2C possible periplasmic protein%2C len: 398 aa%3B 27.2%25 identity to HP1349%3B~Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0 within CDS. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0515;product=putative periplasmic protein;protein_id=CAL34662.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	481630	481698	.	+	.	ID=id-Cj0515;Note=1 probable transmembrane helix predicted for Cj0515 by TMHMM2.0 at aa 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0515
gi|15791399|ref|NC_002163.1|	EMBL	gene	481877	482569	.	+	.	ID=gene-Cj0516;Name=plsC;gbkey=Gene;gene=plsC;gene_biotype=protein_coding;locus_tag=Cj0516
gi|15791399|ref|NC_002163.1|	EMBL	CDS	481877	482569	.	+	0	ID=cds-CAL34663.1;Parent=gene-Cj0516;Dbxref=EnsemblGenomes-Gn:Cj0516,EnsemblGenomes-Tr:CAL34663,GOA:Q0PAZ9,InterPro:IPR002123,InterPro:IPR004552,UniProtKB/TrEMBL:Q0PAZ9,NCBI_GP:CAL34663.1;Name=CAL34663.1;Note=Original (2000) note: Cj0516%2C plsC%2C possible 1-acyl-SN-glycerol-3-phosphate acyltransferase%2C len: 230 aa%3B similar to e.g. PLCB_HUMAN 1-acyl-SN-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) (278 aa)%2C fasta scores%3B opt: 227 z-score: 328.0 E(): 5.7e-11%2C 25.7%25 identity in 210 aa overlap. 38.4%25 identity to HP1348%3B~Updated (2006) note: Pfam domain PF01553 Acyltransferase along with Prosite domains PS50239 GLYCEROL_ACYLTRANS%2C Phospholipid/glycerol acyltransferase and PS00989 CLAT_ADAPTOR_S%2C Clathrin adaptor complex%2Csmall chain were all identified within CDS. Further support given to product function. No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification - Synthesis and modification of macromolecules - Phospholipids%3B~PMID:1557036;gbkey=CDS;gene=plsC;inference=protein motif:Prosite:PS50239;locus_tag=Cj0516;product=putative 1-acyl-SN-glycerol-3-phosphate acyltransferase;protein_id=CAL34663.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	481877	481909	.	+	.	ID=id-Cj0516;Note=PS00989 Clathrin adaptor complexes small chain signature;gbkey=misc_feature;gene=plsC;inference=protein motif:Prosite:PS00989;locus_tag=Cj0516
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	481904	481963	.	+	.	ID=id-Cj0516-2;Note=1 probable transmembrane helix predicted for Cj0516 by TMHMM2.0 at aa 10-29;gbkey=misc_feature;gene=plsC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0516
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	482033	482407	.	+	.	ID=id-Cj0516-3;Note=HMMPfam hit to PF01553%2C Acyltransferase%2C score 1.4e-22;gbkey=misc_feature;gene=plsC;inference=protein motif:Pfam:PF01553;locus_tag=Cj0516
gi|15791399|ref|NC_002163.1|	EMBL	gene	482563	482931	.	+	.	ID=gene-Cj0517;Name=crcB;gbkey=Gene;gene=crcB;gene_biotype=protein_coding;locus_tag=Cj0517
gi|15791399|ref|NC_002163.1|	EMBL	CDS	482563	482931	.	+	0	ID=cds-CAL34664.1;Parent=gene-Cj0517;Dbxref=EnsemblGenomes-Gn:Cj0517,EnsemblGenomes-Tr:CAL34664,GOA:Q9PHZ4,InterPro:IPR003691,NCBI_GP:CAL34664.1;Name=CAL34664.1;Note=Original (2000) note: Cj0517%2C crcB%2C probable integral membrane protein%2C len: 122 aa%3B similar to e.g. CRCB_ECOLI CRCB protein (127 aa)%2C fasta scores%3B opt: 245 z-score: 278.4 E(): 3.2e-08%2C 37.9%25 identity in 124 aa overlap. 33.9%25 identity to HP1225%3B~Updated (2006) note: Pfam domain PF02537 CrcB-like protein identified within CDS. Four probable transmembrane helices predicted by TMHMM2.0 within CDS. Further support given to product function. Functional classification -Membranes%2C lipoproteins and porins%3B~PMID:2904550;gbkey=CDS;gene=crcB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0517;product=CrcB protein homolog;protein_id=CAL34664.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	482575	482925	.	+	.	ID=id-Cj0517;Note=HMMPfam hit to PF02537%2C CrcB-like protein%2C score 4e-29;gbkey=misc_feature;gene=crcB;inference=protein motif:Pfam:PF02537;locus_tag=Cj0517
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	482575	482631	.	+	.	ID=id-Cj0517-2;Note=4 probable transmembrane helices predicted for Cj0517 by TMHMM2.0 at aa 5-23%2C 33-55%2C 62-84 and 99-121;gbkey=misc_feature;gene=crcB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0517;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	482659	482727	.	+	.	ID=id-Cj0517-2;Note=4 probable transmembrane helices predicted for Cj0517 by TMHMM2.0 at aa 5-23%2C 33-55%2C 62-84 and 99-121;gbkey=misc_feature;gene=crcB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0517;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	482746	482814	.	+	.	ID=id-Cj0517-2;Note=4 probable transmembrane helices predicted for Cj0517 by TMHMM2.0 at aa 5-23%2C 33-55%2C 62-84 and 99-121;gbkey=misc_feature;gene=crcB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0517;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	482857	482925	.	+	.	ID=id-Cj0517-2;Note=4 probable transmembrane helices predicted for Cj0517 by TMHMM2.0 at aa 5-23%2C 33-55%2C 62-84 and 99-121;gbkey=misc_feature;gene=crcB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0517;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	483003	484829	.	+	.	ID=gene-Cj0518;Name=htpG;gbkey=Gene;gene=htpG;gene_biotype=protein_coding;locus_tag=Cj0518
gi|15791399|ref|NC_002163.1|	EMBL	CDS	483003	484829	.	+	0	ID=cds-CAL34665.1;Parent=gene-Cj0518;Dbxref=EnsemblGenomes-Gn:Cj0518,EnsemblGenomes-Tr:CAL34665,GOA:Q9PHZ3,InterPro:IPR001404,InterPro:IPR003594,InterPro:IPR019805,InterPro:IPR020568,InterPro:IPR020575,NCBI_GP:CAL34665.1;Name=CAL34665.1;Note=Original (2000) note: Cj0518%2C htpG%2C probable hsp90 family heat shock protein%2C len: 608 aa%3B highly similar to many e.g. HTPG_ECOLI heat shock protein htpG (624 aa)%2Cfasta scores%3B opt: 1500 z-score: 1959.7 E(): 0%2C 44.1%25 identity in 621 aa overlap. 54.3%25 identity to HP0210. Contains PS00298 Heat shock hsp90 proteins family signature%2C and Pfam match to entry PF00183 HSP90%2C Heat shock hsp90 proteins%2C score 685.80%2C E-value 2.1e-202%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Chaperones%2C chaperonins%2C heat shock%3B~PMID:2647735;gbkey=CDS;gene=htpG;inference=protein motif:Prosite:PS00298;locus_tag=Cj0518;product=hsp90 family heat shock protein;protein_id=CAL34665.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	483057	483086	.	+	.	ID=id-Cj0518;Note=PS00298 Heat shock hsp90 proteins family signature;gbkey=misc_feature;gene=htpG;inference=protein motif:Prosite:PS00298;locus_tag=Cj0518
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	483063	483524	.	+	.	ID=id-Cj0518-2;Note=HMMPfam hit to PF02518%2C Histidine kinase-%2C DNA gyrase B-%2C and HSP90%2C score 6.5e-13;gbkey=misc_feature;gene=htpG;inference=protein motif:Pfam:PF02518;locus_tag=Cj0518
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	483525	484826	.	+	.	ID=id-Cj0518-3;Note=HMMPfam hit to PF00183%2C Hsp90 protein%2C score 2.7e-29;gbkey=misc_feature;gene=htpG;inference=protein motif:Pfam:PF00183;locus_tag=Cj0518
gi|15791399|ref|NC_002163.1|	EMBL	gene	484826	485143	.	+	.	ID=gene-Cj0519;Name=Cj0519;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0519
gi|15791399|ref|NC_002163.1|	EMBL	CDS	484826	485143	.	+	0	ID=cds-CAL34666.1;Parent=gene-Cj0519;Dbxref=EnsemblGenomes-Gn:Cj0519,EnsemblGenomes-Tr:CAL34666,InterPro:IPR001763,UniProtKB/TrEMBL:Q0PAZ6,NCBI_GP:CAL34666.1;Name=CAL34666.1;Note=Original (2000) note: Cj0519%2C unknown%2C len: 105 aa%3B similar to hypothetical proteins e.g. TR:E1342888 (EMBL:AJ235272) Rickettsia prowazekii RP600 (123 aa)%2Cfasta scores%3B opt: 151 z-score: 214.9 E(): 0.00011%2C 41.6%25 identity in 89 aa overlap. 34.3%25 identity to HP1223%3B~Updated (2006) note: Prosite domain PS50206 RHODANESE_3%2C Rhodanese domain profile also identified within CDS. Rhodanese%2C a sulphurtransferase involved in cyanide detoxification shares evolutionary relationship with a large family of proteins. This domain is found as a single copy in other proteins%2C including phosphatases and ubiquitin C-terminal hydrolases. Product modified to new function based on motif identification. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Prosite:PS50206;locus_tag=Cj0519;product=putative rhodanese-like domain protein;protein_id=CAL34666.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	485143	485577	.	+	.	ID=gene-Cj0520;Name=Cj0520;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0520
gi|15791399|ref|NC_002163.1|	EMBL	CDS	485143	485577	.	+	0	ID=cds-CAL34667.1;Parent=gene-Cj0520;Dbxref=EnsemblGenomes-Gn:Cj0520,EnsemblGenomes-Tr:CAL34667,UniProtKB/TrEMBL:Q0PAZ5,NCBI_GP:CAL34667.1;Name=CAL34667.1;Note=Original (2000) note: Cj0520%2C possible membrane protein%2C len: 144 aa%3B no Hp match. Contains one possible transmembrane domain at N-terminus. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj0520;product=putative membrane protein;protein_id=CAL34667.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	485146	485202	.	+	.	ID=id-Cj0520;Note=1 probable transmembrane helix predicted for Cj0520 by TMHMM2.0 at aa 2-20;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0520
gi|15791399|ref|NC_002163.1|	EMBL	gene	485698	486201	.	+	.	ID=gene-Cj0522;Name=Cj0522;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0522
gi|15791399|ref|NC_002163.1|	EMBL	CDS	485698	486201	.	+	0	ID=cds-CAL34668.1;Parent=gene-Cj0522;Dbxref=EnsemblGenomes-Gn:Cj0522,EnsemblGenomes-Tr:CAL34668,GOA:Q0PAZ4,InterPro:IPR003841,UniProtKB/TrEMBL:Q0PAZ4,NCBI_GP:CAL34668.1;Name=CAL34668.1;Note=Original (2000) note: Cj0522%2C possible membrane protein%2C len: 167 aa%3B no Hp match. May be fragment of pseudogene%3B~Updated (2006) note: Pfam domain PF02690 Na+/Pi-cotransporter identified within CDS. Three probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Transport/binding proteins - Cations;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0522;product=putative Na+/Pi cotransporter protein;protein_id=CAL34668.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	485704	486186	.	+	.	ID=id-Cj0522;Note=HMMPfam hit to PF02690%2C Na+/Pi-cotransporter%2C score 2.1e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF02690;locus_tag=Cj0522
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	485866	485934	.	+	.	ID=id-Cj0522-2;Note=3 probable transmembrane helices predicted for Cj0522 by TMHMM2.0 at aa 57-79%2C 89-111 and 118-140;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0522;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	485962	486030	.	+	.	ID=id-Cj0522-2;Note=3 probable transmembrane helices predicted for Cj0522 by TMHMM2.0 at aa 57-79%2C 89-111 and 118-140;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0522;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	486049	486117	.	+	.	ID=id-Cj0522-2;Note=3 probable transmembrane helices predicted for Cj0522 by TMHMM2.0 at aa 57-79%2C 89-111 and 118-140;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0522;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	486213	486488	.	+	.	ID=gene-Cj0523;Name=Cj0523;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0523
gi|15791399|ref|NC_002163.1|	EMBL	CDS	486213	486488	.	+	0	ID=cds-CAL34669.1;Parent=gene-Cj0523;Dbxref=EnsemblGenomes-Gn:Cj0523,EnsemblGenomes-Tr:CAL34669,GOA:Q0PAZ3,InterPro:IPR003841,UniProtKB/TrEMBL:Q0PAZ3,NCBI_GP:CAL34669.1;Name=CAL34669.1;Note=Original (2000) note: Cj0523%2C possible membrane protein%2C len: 91 aa%3B no Hp match. May be fragment of pseudogene%3B~Updated (2006) note: Three probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0523;product=putative membrane protein;protein_id=CAL34669.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	486225	486293	.	+	.	ID=id-Cj0523;Note=3 probable transmembrane helices predicted for Cj0523 by TMHMM2.0 at aa 5-27%2C 31-53 and 65-87;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0523;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	486303	486371	.	+	.	ID=id-Cj0523;Note=3 probable transmembrane helices predicted for Cj0523 by TMHMM2.0 at aa 5-27%2C 31-53 and 65-87;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0523;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	486405	486473	.	+	.	ID=id-Cj0523;Note=3 probable transmembrane helices predicted for Cj0523 by TMHMM2.0 at aa 5-27%2C 31-53 and 65-87;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0523;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	486642	487343	.	+	.	ID=gene-Cj0524;Name=Cj0524;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0524
gi|15791399|ref|NC_002163.1|	EMBL	CDS	486642	487343	.	+	0	ID=cds-CAL34670.1;Parent=gene-Cj0524;Dbxref=EnsemblGenomes-Gn:Cj0524,EnsemblGenomes-Tr:CAL34670,UniProtKB/TrEMBL:Q0PAZ2,NCBI_GP:CAL34670.1;Name=CAL34670.1;Note=Original (2000) note: Cj0524%2C unknown%2C len: 233 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins and cotransporter family proteins from other bacteria. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0524;product=hypothetical protein Cj0524;protein_id=CAL34670.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	487340	489148	.	-	.	ID=gene-Cj0525c;Name=pbpB;gbkey=Gene;gene=pbpB;gene_biotype=protein_coding;locus_tag=Cj0525c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	487340	489148	.	-	0	ID=cds-CAL34671.1;Parent=gene-Cj0525c;Dbxref=EnsemblGenomes-Gn:Cj0525c,EnsemblGenomes-Tr:CAL34671,GOA:Q0PAZ1,InterPro:IPR001460,InterPro:IPR005311,InterPro:IPR012338,UniProtKB/TrEMBL:Q0PAZ1,NCBI_GP:CAL34671.1;Name=CAL34671.1;Note=Original (2000) note: Cj0525c%2C pbpB%2C probable penicillin-binding protein%2C len: 602 aa%3B similar to many e.g. PBP2_NEIME penicillin-binding protein 2 (581 aa)%2Cfasta scores%3B opt: 184 z-score: 511.3 E(): 3.5e-21. 28.9%25 identity in 443 aa overlap. 35.8%25 identity to HP1556 (misannotated as cell division protein (ftsI)). Also similar to Cj0508 (22.6%25 identity in 407 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2CPfam match to entry PF00905 Transpeptidase%2C Penicillin binding protein transpeptidase domain%2C score 259.30%2CE-value 5.2e-74 and N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF03717 Penicillin-binding Protein dimerisation domain identified within CDS. Further support given to product function. Characterised in Bacillus subtilis with marginal identity score. Putative kept within product function. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:8244929%2C PMID:8289242;gbkey=CDS;gene=pbpB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0525c;product=putative penicillin-binding protein;protein_id=CAL34671.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	487406	488326	.	-	.	ID=id-Cj0525c;Note=HMMPfam hit to PF00905%2C Penicillin binding protein transpeptid%2C score 2e-66;gbkey=misc_feature;gene=pbpB;inference=protein motif:Pfam:PF00905;locus_tag=Cj0525c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	487589	487612	.	-	.	ID=id-Cj0525c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=pbpB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0525c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	488444	489010	.	-	.	ID=id-Cj0525c-3;Note=HMMPfam hit to PF03717%2C Penicillin-binding Protein dimerisatio%2C score 6.6e-30;gbkey=misc_feature;gene=pbpB;inference=protein motif:Pfam:PF03717;locus_tag=Cj0525c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	489047	489115	.	-	.	ID=id-Cj0525c-4;Note=1 probable transmembrane helix predicted for Cj0525c by TMHMM2.0 at aa 12-34;gbkey=misc_feature;gene=pbpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0525c
gi|15791399|ref|NC_002163.1|	EMBL	gene	489155	489451	.	-	.	ID=gene-Cj0526c;Name=fliE;gbkey=Gene;gene=fliE;gene_biotype=protein_coding;locus_tag=Cj0526c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	489155	489451	.	-	0	ID=cds-CAL34672.1;Parent=gene-Cj0526c;Dbxref=EnsemblGenomes-Gn:Cj0526c,EnsemblGenomes-Tr:CAL34672,GOA:Q9PHY8,InterPro:IPR001624,NCBI_GP:CAL34672.1;Name=CAL34672.1;Note=Original (2000) note: Cj0526c%2C fliE%2C probable flagellar hook-basal body complex protein%2C len: 98 aa%3B similar to e.g. FLIE_BACSU flagellar hook-basal body complex protein (106 aa)%2C fasta scores%3B opt: 182 z-score: 262.0 E(): 2.7e-07 34.0%25 identity in 97 aa overlap. 60.9%25 identity to HP1557%3B~Updated (2006) note: Pfam domain PF02049 Flagellar hook-basal body complex protein FliE identified within CDS. These genes form proteins that are thought be involved in bacterial flagellar assembly. FliE is said to form part of the hook-basal body complex of bacterial flagellar. The FlgB%2C FlgC and FlgG proteins are components of the proximal and distal rods%3B FliF forms the M-ring that anchors the rod assembly to the membrane. Characterised within Bacillus subtilis with marginal identity score. Putative was removed from product function. Functional classification - Surface structures%3B~PMID:1905667%2C PMID:1551848;gbkey=CDS;gene=fliE;inference=protein motif:Pfam:PF02049;locus_tag=Cj0526c;product=flagellar hook-basal body complex protein;protein_id=CAL34672.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	489158	489439	.	-	.	ID=id-Cj0526c;Note=HMMPfam hit to PF02049%2C Flagellar hook-basal body complex protein Fl%2C score 4.3e-22;gbkey=misc_feature;gene=fliE;inference=protein motif:Pfam:PF02049;locus_tag=Cj0526c
gi|15791399|ref|NC_002163.1|	EMBL	gene	489458	489952	.	-	.	ID=gene-Cj0527c;Name=flgC;gbkey=Gene;gene=flgC;gene_biotype=protein_coding;locus_tag=Cj0527c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	489458	489952	.	-	0	ID=cds-CAL34673.1;Parent=gene-Cj0527c;Dbxref=EnsemblGenomes-Gn:Cj0527c,EnsemblGenomes-Tr:CAL34673,GOA:Q0PAY9,InterPro:IPR001444,InterPro:IPR006299,InterPro:IPR010930,InterPro:IPR019776,UniProtKB/TrEMBL:Q0PAY9,NCBI_GP:CAL34673.1;Name=CAL34673.1;Note=Original (2000) note: Cj0527c%2C flgC%2C probable flagellar basal-body rod protein%2C len: 164 aa%3B similar to many e.g. FLGC_BACSU flagellar basal-body rod protein (150 aa)%2C fasta scores%3B opt: 259 z-score: 521.0 E(): 1e-21%2C39.5%25 identity in 167 aa overlap. 67.1%25 identity to HP1558. Contains PS00588 Flagella basal body rod proteins signature and Pfam match to entry PF00460 flg_bb_rod%2CFlagella basal body rod proteins score 34.50%2C E-value 3e-07%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Surface structures%3B~PMID:1905667;gbkey=CDS;gene=flgC;inference=protein motif:Prosite:PS00588;locus_tag=Cj0527c;product=flagellar basal-body rod protein;protein_id=CAL34673.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	489470	489586	.	-	.	ID=id-Cj0527c;Note=HMMPfam hit to PF06429%2C Domain of unknown function (DUF1078)%2C score 2.2e-06;gbkey=misc_feature;gene=flgC;inference=protein motif:Pfam:PF06429;locus_tag=Cj0527c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	489842	489934	.	-	.	ID=id-Cj0527c-2;Note=HMMPfam hit to PF00460%2C Flagella basal body rod protein%2C score 8.5e-07;gbkey=misc_feature;gene=flgC;inference=protein motif:Pfam:PF00460;locus_tag=Cj0527c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	489854	489916	.	-	.	ID=id-Cj0527c-3;Note=PS00588 Flagella basal body rod proteins signature;gbkey=misc_feature;gene=flgC;inference=protein motif:Prosite:PS00588;locus_tag=Cj0527c
gi|15791399|ref|NC_002163.1|	EMBL	gene	489962	490393	.	-	.	ID=gene-Cj0528c;Name=flgB;gbkey=Gene;gene=flgB;gene_biotype=protein_coding;locus_tag=Cj0528c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	489962	490393	.	-	0	ID=cds-CAL34674.1;Parent=gene-Cj0528c;Dbxref=EnsemblGenomes-Gn:Cj0528c,EnsemblGenomes-Tr:CAL34674,GOA:Q0PAY8,InterPro:IPR006300,UniProtKB/TrEMBL:Q0PAY8,NCBI_GP:CAL34674.1;Name=CAL34674.1;Note=Original (2000) note: Cj0528c%2C flgB%2C probable flagellar basal-body rod protein%2C len: 143 aa%3B similar to e.g. FLGB_BACSU flagellar basal-body rod protein (129 aa)%2Cfasta scores%3B opt: 107 z-score: 279.3 E(): 2.9e-08%2C 27.6%25 identity in 123 aa overlap. 43.0%25 identity to HP1559%3B~Updated (2006) note: Pfam domain PF00460 Flagella basal body rod protein identified within CDS by carrying out own Pfam search. Further support given to product function. These sequences represent FlgB%2C one of several components of bacterial flagella. FlgB is part of the basal body structure. Characterised within Bacillus subtilis with marginal identity scores. Putative was removed from product function. Functional classification -Surface structures%3B~PMID:1905667;gbkey=CDS;gene=flgB;inference=protein motif:Pfam:PF00460;locus_tag=Cj0528c;product=flagellar basal-body rod protein;protein_id=CAL34674.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	490474	491475	.	-	.	ID=gene-Cj0529c;Name=Cj0529c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0529c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	490474	491475	.	-	0	ID=cds-CAL34675.1;Parent=gene-Cj0529c;Dbxref=EnsemblGenomes-Gn:Cj0529c,EnsemblGenomes-Tr:CAL34675,GOA:Q0PAY7,InterPro:IPR003770,InterPro:IPR013087,UniProtKB/TrEMBL:Q0PAY7,NCBI_GP:CAL34675.1;Name=CAL34675.1;Note=Original (2000) note: Cj0529c%2C unknown%2C len: 333 aa%3B similar to hypothetical proteins e.g.YCEG_ECOLI hypothetical 38.2 kd protein in PABC-HOLB intergenic region (340 aa)%2C fasta scores%3B opt: 326 z-score: 408.1 E(): 1.9e-15%2C 31.3%25 identity in 252 aa overlap. 43.0%25 identity to HP0587 (misannotated as aminodeoxychorismate lyase (pabC))%3B~Updated (2006) note: Pfam domain PF02618 Aminodeoxychorismate lyase identified within CDS. Two probable transmembrane helices predicted by TMHMM2.0 within CDS. This family contains several aminodeoxychorismate lyase proteins. Aminodeoxychorismate lyase is a pyridoxal 5'-phosphate-dependent enzyme that converts 4-aminodeoxychorismate to pyruvate and p-aminobenzoate%2C a precursor of folic acid in bacteria (PMID:11011151). Product modified to more specific family member based on motif match. No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification -Misc%3B~PMID:11011151;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0529c;product=putative aminodeoxychorismate lyase family protein;protein_id=CAL34675.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	490477	491322	.	-	.	ID=id-Cj0529c;Note=HMMPfam hit to PF02618%2C Aminodeoxychorismate lyase%2Cscore 4.8e-109;gbkey=misc_feature;inference=protein motif:Pfam:PF02618;locus_tag=Cj0529c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	491347	491415	.	-	.	ID=id-Cj0529c-2;Note=1 probable transmembrane helix predicted for Cj0529c by TMHMM2.0 at aa 21-43;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0529c
gi|15791399|ref|NC_002163.1|	EMBL	gene	491390	493960	.	+	.	ID=gene-Cj0530;Name=Cj0530;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0530
gi|15791399|ref|NC_002163.1|	EMBL	CDS	491390	493960	.	+	0	ID=cds-CAL34676.1;Parent=gene-Cj0530;Dbxref=EnsemblGenomes-Gn:Cj0530,EnsemblGenomes-Tr:CAL34676,InterPro:IPR025263,UniProtKB/TrEMBL:Q0PAY6,NCBI_GP:CAL34676.1;Name=CAL34676.1;Note=Original (2000) note: Cj0530%2C probable periplasmic protein%2C len: 856 aa%3B 22.7%25 identity to HP0586. Contains N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0530;product=putative periplasmic protein;protein_id=CAL34676.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	491408	491476	.	+	.	ID=id-Cj0530;Note=1 probable transmembrane helix predicted for Cj0530 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0530
gi|15791399|ref|NC_002163.1|	EMBL	gene	494077	496281	.	+	.	ID=gene-Cj0531;Name=icd;gbkey=Gene;gene=icd;gene_biotype=protein_coding;locus_tag=Cj0531
gi|15791399|ref|NC_002163.1|	EMBL	CDS	494077	496281	.	+	0	ID=cds-CAL34677.1;Parent=gene-Cj0531;Dbxref=EnsemblGenomes-Gn:Cj0531,EnsemblGenomes-Tr:CAL34677,GOA:Q0PAY5,InterPro:IPR004436,InterPro:IPR024084,UniProtKB/TrEMBL:Q0PAY5,NCBI_GP:CAL34677.1;Name=CAL34677.1;Note=Original (2000) note: Cj0531%2C icd%2C probable isocitrate dehydrogenase%2C len: 734 aa%3B highly similar to e.g. IDH2_VIBA1 isocitrate dehydrogenase (NADP) 2 (EC 1.1.1.42) (741 aa)%2C fasta scores%3B opt: 2534 z-score: 3250.7 E(): 0%2C 53.3%25 identity in 733 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03971 Monomeric isocitrate dehydrogenase identified within CDS. Further support given to product function. Characterised within Vibrio sp. strain ABE-1 with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Tricarboxylic acid cycle%3B~PMID:8226630%2C PMID:14702320;gbkey=CDS;gene=icd;inference=protein motif:Pfam:PF03971;locus_tag=Cj0531;product=isocitrate dehydrogenase;protein_id=CAL34677.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	494080	496266	.	+	.	ID=id-Cj0531;Note=HMMPfam hit to PF03971%2C Monomeric isocitrate dehydrogenase%2C score 0;gbkey=misc_feature;gene=icd;inference=protein motif:Pfam:PF03971;locus_tag=Cj0531
gi|15791399|ref|NC_002163.1|	EMBL	gene	496278	497180	.	+	.	ID=gene-Cj0532;Name=mdh;gbkey=Gene;gene=mdh;gene_biotype=protein_coding;locus_tag=Cj0532
gi|15791399|ref|NC_002163.1|	EMBL	CDS	496278	497180	.	+	0	ID=cds-CAL34678.1;Parent=gene-Cj0532;Dbxref=EnsemblGenomes-Gn:Cj0532,EnsemblGenomes-Tr:CAL34678,GOA:Q9PHY2,InterPro:IPR001236,InterPro:IPR001557,InterPro:IPR015955,InterPro:IPR016040,InterPro:IPR022383,NCBI_GP:CAL34678.1;Name=CAL34678.1;Note=Original (2000) note: Cj0532%2C mdh%2C probable malate dehydrogenase%2C len: 300 aa%3B MDH_CHLTE malate dehydrogenase (EC 1.1.1.37) (310 aa)%2C fasta scores%3B opt: 652 z-score: 1151.6 E(): 0%2C 35.4%25 identity in 294 aa overlap. No Hp match. Also similar toCj1167 ldh (25.4%25 identity in 311 aa overlap). Contains Pfam match to entry PF00056 ldh%2CL-lactate dehydrogenases%2C score 153.00%2C E-value 1e-42%3B~Updated (2006) note: Pfam domain PF02866 lactate/malate dehydrogenase%2C alpha/beta C-terminal domain identified within CDS. Further support given to product function. Characterised within Chlorobium tepidum and Bacillus subtilis with acceptable identity scores. Putative not added to product function. Functional classification - Energy metabolism - Tricarboxylic acid cycle%3B~PMID:1735722%2C PMID:8550482%2C PMID:14702320;gbkey=CDS;gene=mdh;inference=protein motif:Pfam:PF02866;locus_tag=Cj0532;product=malate dehydrogenase;protein_id=CAL34678.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	496278	496700	.	+	.	ID=id-Cj0532;Note=HMMPfam hit to PF00056%2C lactate/malate dehydrogenase%2C NAD binding do%2C score 2.4e-28;gbkey=misc_feature;gene=mdh;inference=protein motif:Pfam:PF00056;locus_tag=Cj0532
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	496707	497174	.	+	.	ID=id-Cj0532-2;Note=HMMPfam hit to PF02866%2C lactate/malate dehydrogenase%2C alpha/beta C-t%2C score 4.6e-09;gbkey=misc_feature;gene=mdh;inference=protein motif:Pfam:PF02866;locus_tag=Cj0532
gi|15791399|ref|NC_002163.1|	EMBL	gene	497181	498344	.	+	.	ID=gene-Cj0533;Name=sucC;gbkey=Gene;gene=sucC;gene_biotype=protein_coding;locus_tag=Cj0533
gi|15791399|ref|NC_002163.1|	EMBL	CDS	497181	498344	.	+	0	ID=cds-CAL34679.1;Parent=gene-Cj0533;Dbxref=EnsemblGenomes-Gn:Cj0533,EnsemblGenomes-Tr:CAL34679,GOA:Q9PHY1,InterPro:IPR005809,InterPro:IPR005811,InterPro:IPR013650,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016102,InterPro:IPR017866,NCBI_GP:CAL34679.1;Name=CAL34679.1;Note=Original (2000) note: Cj0533%2C sucC%2C probable succinyl-coA synthetase beta chain%2C len: 387 aa%3B similar to e.g. SUCC_BACSU succinyl-coA synthetase beta chain (EC 6.2.1.5) (385 aa)%2C fasta scores%3B opt: 1362 z-score: 2032.3 E(): 0%2C 53.4%25 identity in 386 aa overlap. No Hp match. Contains Pfam match to entry PF00549 ligase-CoA%2CCoA-ligases%2C score 204.90%2C E-value 1.2e-57%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Tricarboxylic acid cycle%3B~PMID:2548486%2C PMID:14702320;gbkey=CDS;gene=sucC;inference=protein motif:Pfam:PF00549;locus_tag=Cj0533;product=succinyl-coA synthetase beta chain;protein_id=CAL34679.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	497265	497774	.	+	.	ID=id-Cj0533;Note=HMMPfam hit to PF02222%2C ATP-grasp domain%2C score 5e-19;gbkey=misc_feature;gene=sucC;inference=protein motif:Pfam:PF02222;locus_tag=Cj0533
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	497916	498329	.	+	.	ID=id-Cj0533-2;Note=HMMPfam hit to PF00549%2C CoA-ligase%2C score 1.4e-59;gbkey=misc_feature;gene=sucC;inference=protein motif:Pfam:PF00549;locus_tag=Cj0533
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	497949	498023	.	+	.	ID=id-Cj0533-3;Note=PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3;gbkey=misc_feature;gene=sucC;inference=protein motif:Prosite:PS01217;locus_tag=Cj0533
gi|15791399|ref|NC_002163.1|	EMBL	gene	498354	499223	.	+	.	ID=gene-Cj0534;Name=sucD;gbkey=Gene;gene=sucD;gene_biotype=protein_coding;locus_tag=Cj0534
gi|15791399|ref|NC_002163.1|	EMBL	CDS	498354	499223	.	+	0	ID=cds-CAL34680.1;Parent=gene-Cj0534;Dbxref=EnsemblGenomes-Gn:Cj0534,EnsemblGenomes-Tr:CAL34680,GOA:Q0PAY2,InterPro:IPR003781,InterPro:IPR005810,InterPro:IPR005811,InterPro:IPR016040,InterPro:IPR016102,InterPro:IPR017440,UniProtKB/TrEMBL:Q0PAY2,NCBI_GP:CAL34680.1;Name=CAL34680.1;Note=Original (2000) note: Cj0534%2C sucD%2C probable succinyl-coA synthetase alpha chain%2C len: 289 aa%3B highly similar to many e.g. SUCD_ECOLI succinyl-coA synthetase alpha chain (EC 6.2.1.5) (288 aa)%2C fasta scores%3B opt: 1101 z-score: 1532.0 E(): 0%2C 58.5%25 identity in 287 aa overlap. No Hp match. Contains PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1%2C PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site%2C and Pfam match to entry PF00549 ligase-CoA%2CCoA-ligases%2C score 142.30%2C E-value 8.6e-39%3B~Updated (2006) note: Pfam domain PF02629 CoA binding domain domain identified within CDS. Further support given to product function. Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Energy metabolism -Tricarboxylic acid cycle%3B~PMID:3543212%2C PMID:14702320;gbkey=CDS;gene=sucD;inference=protein motif:Prosite:PS01216;locus_tag=Cj0534;product=succinyl-coA synthetase alpha chain;protein_id=CAL34680.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	498363	498698	.	+	.	ID=id-Cj0534;Note=HMMPfam hit to PF02629%2C CoA binding domain%2C score 2.2e-59;gbkey=misc_feature;gene=sucD;inference=protein motif:Pfam:PF02629;locus_tag=Cj0534
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	498750	499175	.	+	.	ID=id-Cj0534-2;Note=HMMPfam hit to PF00549%2C CoA-ligase%2C score 2.3e-39;gbkey=misc_feature;gene=sucD;inference=protein motif:Pfam:PF00549;locus_tag=Cj0534
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	498807	498896	.	+	.	ID=id-Cj0534-3;Note=PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1;gbkey=misc_feature;gene=sucD;inference=protein motif:Prosite:PS01216;locus_tag=Cj0534
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	499059	499100	.	+	.	ID=id-Cj0534-4;Note=PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site;gbkey=misc_feature;gene=sucD;inference=protein motif:Prosite:PS00399;locus_tag=Cj0534
gi|15791399|ref|NC_002163.1|	EMBL	gene	499238	499549	.	+	.	ID=gene-Cj0535;Name=oorD;gbkey=Gene;gene=oorD;gene_biotype=protein_coding;locus_tag=Cj0535
gi|15791399|ref|NC_002163.1|	EMBL	CDS	499238	499549	.	+	0	ID=cds-CAL34681.1;Parent=gene-Cj0535;Dbxref=EnsemblGenomes-Gn:Cj0535,EnsemblGenomes-Tr:CAL34681,GOA:Q0PAY1,InterPro:IPR001450,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q0PAY1,NCBI_GP:CAL34681.1;Name=CAL34681.1;Note=Original (2000) note: Cj0535%2C oorD%2C probable OORD subunit of 2-oxoglutarate:acceptor oxidoreductase%2C len: 103 aa%3B similar to TR:O68227 (EMBL:AF021094) H. pylori OORD subunit of 2-oxoglutarate:acceptor oxidoreductase (113 aa)%2C fasta scores%3B opt: 436 z-score: 768.9 E(): 0%2C59.8%25 identity in 97 aa overlap. 59.8%25 identity to HP0588. Contains 2x PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature and Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains.%2C score 17.40%2C E-value 0.00091%3B~Updated (2006) note: Characterised within Helicobacter pylori with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:9495749%2C PMID:7608066%2C PMID:14702320;gbkey=CDS;gene=oorD;inference=protein motif:Prosite:PS00198;locus_tag=Cj0535;product=OORD subunit of 2-oxoglutarate:acceptor oxidoreductase;protein_id=CAL34681.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	499268	499339	.	+	.	ID=id-Cj0535;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 2.5e-05;gbkey=misc_feature;gene=oorD;inference=protein motif:Pfam:PF00037;locus_tag=Cj0535
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	499289	499324	.	+	.	ID=id-Cj0535-2;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=oorD;inference=protein motif:Prosite:PS00198;locus_tag=Cj0535
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	499379	499450	.	+	.	ID=id-Cj0535-3;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 5.8e-05;gbkey=misc_feature;gene=oorD;inference=protein motif:Pfam:PF00037;locus_tag=Cj0535
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	499400	499435	.	+	.	ID=id-Cj0535-4;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=oorD;inference=protein motif:Prosite:PS00198;locus_tag=Cj0535
gi|15791399|ref|NC_002163.1|	EMBL	gene	499558	500682	.	+	.	ID=gene-Cj0536;Name=oorA;gbkey=Gene;gene=oorA;gene_biotype=protein_coding;locus_tag=Cj0536
gi|15791399|ref|NC_002163.1|	EMBL	CDS	499558	500682	.	+	0	ID=cds-CAL34682.1;Parent=gene-Cj0536;Dbxref=EnsemblGenomes-Gn:Cj0536,EnsemblGenomes-Tr:CAL34682,GOA:Q0PAY0,InterPro:IPR002880,InterPro:IPR005476,InterPro:IPR009014,InterPro:IPR029061,UniProtKB/TrEMBL:Q0PAY0,NCBI_GP:CAL34682.1;Name=CAL34682.1;Note=Original (2000) note: Cj0536%2C oorA%2C probable OORA subunit of 2-oxoglutarate:acceptor oxidoreductase%2C len: 374 aa%3B similar to TR:O68228 (EMBL:AF021094) H. pylori OORA subunit of 2-oxoglutarate:acceptor oxidoreductase (371 aa)%2C fasta scores%3B opt: 1447 z-score: 2256.7 E(): 0%2C62.7%25 identity in 351 aa overlap. 63.2%25 identity to HP0589%3B~Updated (2006) note: Pfam domain PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase identified within CDS. Further support given to product function. Characterised within Helicobacter pylori with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:9495749%2C PMID:7608066%2C PMID:14702320;gbkey=CDS;gene=oorA;inference=protein motif:Pfam:PF01855;locus_tag=Cj0536;product=OORA subunit of 2-oxoglutarate:acceptor oxidoreductase;protein_id=CAL34682.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	499597	500304	.	+	.	ID=id-Cj0536;Note=HMMPfam hit to PF01855%2C Pyruvate flavodoxin/ferredoxin oxidoreductas%2C score 5e-93;gbkey=misc_feature;gene=oorA;inference=protein motif:Pfam:PF01855;locus_tag=Cj0536
gi|15791399|ref|NC_002163.1|	EMBL	gene	500683	501528	.	+	.	ID=gene-Cj0537;Name=oorB;gbkey=Gene;gene=oorB;gene_biotype=protein_coding;locus_tag=Cj0537
gi|15791399|ref|NC_002163.1|	EMBL	CDS	500683	501528	.	+	0	ID=cds-CAL34683.1;Parent=gene-Cj0537;Dbxref=EnsemblGenomes-Gn:Cj0537,EnsemblGenomes-Tr:CAL34683,GOA:Q0PAX9,InterPro:IPR011766,InterPro:IPR029061,UniProtKB/TrEMBL:Q0PAX9,NCBI_GP:CAL34683.1;Name=CAL34683.1;Note=Original (2000) note: Cj0537%2C oorB%2C probable OORB subunit of 2-oxoglutarate:acceptor oxidoreductase%2C len: 281 aa%3B similar to TR:O68229 (EMBL:AF021094) H. pylori OORB subunit of 2-oxoglutarate:acceptor oxidoreductase (274 aa)%2C fasta scores%3B opt: 1356 z-score: 2118.6 E(): 0%2C69.7%25 identity in 274 aa overlap. 72.9%25 identity to HP0590%3B~Updated (2006) note: Pfam domain PF02775 Thiamine pyrophosphate enzyme%2C C-terminal identified within CDS. Further support given to product function. Characterised within Helicobacter pylori with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:9495749%2C PMID:7608066%2C PMID:14702320;gbkey=CDS;gene=oorB;inference=protein motif:Pfam:PF02775;locus_tag=Cj0537;product=OORB subunit of 2-oxoglutarate:acceptor oxidoreductase;protein_id=CAL34683.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	500731	501297	.	+	.	ID=id-Cj0537;Note=HMMPfam hit to PF02775%2C Thiamine pyrophosphate enzyme%2C C-termina%2C score 3.8e-87;gbkey=misc_feature;gene=oorB;inference=protein motif:Pfam:PF02775;locus_tag=Cj0537
gi|15791399|ref|NC_002163.1|	EMBL	gene	501525	502082	.	+	.	ID=gene-Cj0538;Name=oorC;gbkey=Gene;gene=oorC;gene_biotype=protein_coding;locus_tag=Cj0538
gi|15791399|ref|NC_002163.1|	EMBL	CDS	501525	502082	.	+	0	ID=cds-CAL34684.1;Parent=gene-Cj0538;Dbxref=EnsemblGenomes-Gn:Cj0538,EnsemblGenomes-Tr:CAL34684,GOA:Q0PAX8,InterPro:IPR002869,InterPro:IPR019752,PDB:3G2E,UniProtKB/TrEMBL:Q0PAX8,NCBI_GP:CAL34684.1;Name=CAL34684.1;Note=Original (2000) note: Cj0538%2C oorC%2C probable OORC subunit of 2-oxoglutarate:acceptor oxidoreductase%2C len: 185 aa%3B similar to TR:O68230 (EMBL:AF021094) H. pylori OORC subunit of 2-oxoglutarate:acceptor oxidoreductase (184 aa)%2C fasta scores%3B opt: 714 z-score: 1191.4 E(): 0%2C59.7%25 identity in 181 aa overlap. 60.8%25 identity to HP0591%3B~Updated (2006) note: Pfam domain PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase identified within CDS. Further support given to product function. Characterised within Helicobacter pylori with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:9495749%2C PMID:7608066%2C PMID:14702320;gbkey=CDS;gene=oorC;inference=protein motif:Pfam:PF01558;locus_tag=Cj0538;product=OORC subunit of 2-oxoglutarate:acceptor oxidoreductase;protein_id=CAL34684.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	501555	502052	.	+	.	ID=id-Cj0538;Note=HMMPfam hit to PF01558%2C Pyruvate ferredoxin/flavodoxin oxidoreductas%2C score 3.8e-35;gbkey=misc_feature;gene=oorC;inference=protein motif:Pfam:PF01558;locus_tag=Cj0538
gi|15791399|ref|NC_002163.1|	EMBL	gene	502221	502484	.	+	.	ID=gene-Cj0539;Name=Cj0539;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0539
gi|15791399|ref|NC_002163.1|	EMBL	CDS	502221	502484	.	+	0	ID=cds-CAL34685.1;Parent=gene-Cj0539;Dbxref=EnsemblGenomes-Gn:Cj0539,EnsemblGenomes-Tr:CAL34685,InterPro:IPR018563,InterPro:IPR023126,PDB:4NPX,UniProtKB/TrEMBL:Q0PAX7,NCBI_GP:CAL34685.1;Name=CAL34685.1;Note=Original (2000) note: Cj0539%2C unknown%2C len: 87 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0539;product=hypothetical protein Cj0539;protein_id=CAL34685.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	502487	503023	.	+	.	ID=gene-Cj0540;Name=Cj0540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0540
gi|15791399|ref|NC_002163.1|	EMBL	CDS	502487	503023	.	+	0	ID=cds-CAL34686.1;Parent=gene-Cj0540;Dbxref=EnsemblGenomes-Gn:Cj0540,EnsemblGenomes-Tr:CAL34686,UniProtKB/TrEMBL:Q0PAX6,NCBI_GP:CAL34686.1;Name=CAL34686.1;Note=Original (2000) note: Cj0540%2C unknown%2C len: 178 aa%3B 30.6%25 identity in 72 aa overlap (N-terminus) to HP0241%3B~Updated (2006) note: Product function modified to more specific family member based on SignalP 2.0 HMM results. Putative kept within product function. Functional classification - Protein and peptide secretion;gbkey=CDS;locus_tag=Cj0540;product=putative exporting protein;protein_id=CAL34686.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	503037	503930	.	+	.	ID=gene-Cj0541;Name=Cj0541;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0541
gi|15791399|ref|NC_002163.1|	EMBL	CDS	503037	503930	.	+	0	ID=cds-CAL34687.1;Parent=gene-Cj0541;Dbxref=EnsemblGenomes-Gn:Cj0541,EnsemblGenomes-Tr:CAL34687,GOA:Q0PAX5,InterPro:IPR000092,InterPro:IPR008949,InterPro:IPR017446,UniProtKB/TrEMBL:Q0PAX5,NCBI_GP:CAL34687.1;Name=CAL34687.1;Note=Original (2000) note: Cj0541%2C probable polyprenyl synthetase%2C len: 297 aa%3B similar to many e.g. ISPB_ECOLI octaprenyl-diphosphate synthase (EC 2.5.1.-) (323 aa)%2Cfasta scores%3B opt: 514 z-score: 753.9 E(): 0%2C 35.2%25 identity in 281 aa overlap%2C IDSA_METTM bifunctional short chain isoprenyl diphosphate synthase (324 aa)%2C fasta scores%3B opt: 549 z-score: 676.0 E(): 2.3e-30%2C 36.5%25 identity in 277 aa overlap%2C and GGPP_SULAC geranylgeranyl pyrophosphate synthetase (330 aa)%2C fasta scores%3B opt: 330 z-score: 653.2 E(): 4.4e-29%2C 32.9%25 identity in 292 aa overlap. 44.6%25 identity to HP0240. Also similar to Cj1644 (27.6%25 identity in 268 aa overlap). Contains PS00723 and PS00444 Polyprenyl synthetases signatures 1 and 2%2C and Pfam match to entry PF00348 polyprenyl_synt%2C Polyprenyl synthetases%2C score 153.40%2C E-value 3.8e-42%3B~Updated (2006) note: Similarity to more than one characterised genus with acceptable identity scores. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Menaquinone and ubiquinine%3B~PMID:8037730;gbkey=CDS;inference=protein motif:Prosite:PS00723;locus_tag=Cj0541;product=polyprenyl synthetase;protein_id=CAL34687.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	503094	503825	.	+	.	ID=id-Cj0541;Note=HMMPfam hit to PF00348%2C Polyprenyl synthetase%2Cscore 1.4e-43;gbkey=misc_feature;inference=protein motif:Pfam:PF00348;locus_tag=Cj0541
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	503223	503267	.	+	.	ID=id-Cj0541-2;Note=PS00723 Polyprenyl synthetases signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00723;locus_tag=Cj0541
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	503577	503615	.	+	.	ID=id-Cj0541-3;Note=PS00444 Polyprenyl synthetases signature 2;gbkey=misc_feature;inference=protein motif:Prosite:PS00444;locus_tag=Cj0541
gi|15791399|ref|NC_002163.1|	EMBL	gene	503930	505228	.	+	.	ID=gene-Cj0542;Name=hemA;gbkey=Gene;gene=hemA;gene_biotype=protein_coding;locus_tag=Cj0542
gi|15791399|ref|NC_002163.1|	EMBL	CDS	503930	505228	.	+	0	ID=cds-CAL34688.1;Parent=gene-Cj0542;Dbxref=EnsemblGenomes-Gn:Cj0542,EnsemblGenomes-Tr:CAL34688,GOA:Q9PHX2,InterPro:IPR000343,InterPro:IPR006151,InterPro:IPR015895,InterPro:IPR015896,InterPro:IPR016040,InterPro:IPR018214,NCBI_GP:CAL34688.1;Name=CAL34688.1;Note=Original (2000) note: Cj0542%2C hemA%2C probable glutamyl-tRNA reductase%2C len: 432 aa%3B simlar to many e.g. HEM1_ECOLI glutamyl-tRNA reductase (EC 1.2.1.-) (418 aa)%2Cfasta scores%3B opt: 591 z-score: 745.1 E(): 0%2C 31.3%25 identity in 422 aa overlap. 42.1%25 identity to HP0239. Contains Pfam match to entry PF00745 GlutR%2CGlutaminyl-tRNA reductase%2C score 237.10%2C E-value 2.4e-67%3B~Updated (2006) note: Pfam domains PF05201 Glutamyl-tRNAGlu reductase%2C N-terminal and PF05200 Glutamyl-tRNAGlu reductase%2C NAD(P) binding were identified within CDS. Further support given to product function. EC number has also been updated. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Heme%3B~PMID:1569081;gbkey=CDS;gene=hemA;inference=protein motif:Pfam:PF05201;locus_tag=Cj0542;product=glutamyl-tRNA reductase;protein_id=CAL34688.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	503942	504394	.	+	.	ID=id-Cj0542;Note=HMMPfam hit to PF05201%2C Glutamyl-tRNAGlu reductase%2CN-terminal%2C score 4.3e-44;gbkey=misc_feature;gene=hemA;inference=protein motif:Pfam:PF05201;locus_tag=Cj0542
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	504404	504847	.	+	.	ID=id-Cj0542-2;Note=HMMPfam hit to PF05200%2C Glutamyl-tRNAGlu reductase%2CNAD(P) bin%2C score 2e-66;gbkey=misc_feature;gene=hemA;inference=protein motif:Pfam:PF05200;locus_tag=Cj0542
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	504857	505159	.	+	.	ID=id-Cj0542-3;Note=HMMPfam hit to PF00745%2C Glutamyl-tRNAGlu reductase%2Cdimerisati%2C score 2.9e-30;gbkey=misc_feature;gene=hemA;inference=protein motif:Pfam:PF00745;locus_tag=Cj0542
gi|15791399|ref|NC_002163.1|	EMBL	gene	505212	506921	.	+	.	ID=gene-Cj0543;Name=proS;gbkey=Gene;gene=proS;gene_biotype=protein_coding;locus_tag=Cj0543
gi|15791399|ref|NC_002163.1|	EMBL	CDS	505212	506921	.	+	0	ID=cds-CAL34689.1;Parent=gene-Cj0543;Dbxref=EnsemblGenomes-Gn:Cj0543,EnsemblGenomes-Tr:CAL34689,GOA:Q9PHX1,InterPro:IPR002314,InterPro:IPR002316,InterPro:IPR004154,InterPro:IPR004500,InterPro:IPR006195,InterPro:IPR007214,InterPro:IPR023717,NCBI_GP:CAL34689.1;Name=CAL34689.1;Note=Original (2000) note: Cj0543%2C proS%2C probable prolyl-tRNA synthetase%2C len: 369 aa%3B highly similar to many e.g. SYP_ECOLI prolyl-tRNA synthetase (EC 6.1.1.15) (572 aa)%2C fasta scores%3B opt: 1611 z-score: 1967.2 E(): 0%2C45.8%25 identity in 578 aa overlap. 53.4%25 identity to HP0238. Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1 and Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetases class II (Gly%2C His%2CPro and Ser)%2C score 27.10%2C E-value 2.7e-05%3B~Updated (2006) note: Pfam domains PF00587 tRNA synthetase class II core domain (G%2CH%2CP%2CS and T)%2C PF04073 YbaK / prolyl-tRNA synthetases associated domain and PF03129 Anticodon binding domain%2C were identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:1688424;gbkey=CDS;gene=proS;inference=protein motif:Prosite:PS00179;locus_tag=Cj0543;product=prolyl-tRNA synthetase;protein_id=CAL34689.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	505326	505790	.	+	.	ID=id-Cj0543;Note=HMMPfam hit to PF00587%2C tRNA synthetase class II core domain (%2C score 6.1e-53;gbkey=misc_feature;gene=proS;inference=protein motif:Pfam:PF00587;locus_tag=Cj0543
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	505629	505691	.	+	.	ID=id-Cj0543-2;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=proS;inference=protein motif:Prosite:PS00179;locus_tag=Cj0543
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	505971	506372	.	+	.	ID=id-Cj0543-3;Note=HMMPfam hit to PF04073%2C YbaK / prolyl-tRNA synthetases associa%2C score 4.8e-06;gbkey=misc_feature;gene=proS;inference=protein motif:Pfam:PF04073;locus_tag=Cj0543
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	506640	506912	.	+	.	ID=id-Cj0543-4;Note=HMMPfam hit to PF03129%2C Anticodon binding domain%2Cscore 7.4e-20;gbkey=misc_feature;gene=proS;inference=protein motif:Pfam:PF03129;locus_tag=Cj0543
gi|15791399|ref|NC_002163.1|	EMBL	gene	506918	507307	.	+	.	ID=gene-Cj0544;Name=Cj0544;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0544
gi|15791399|ref|NC_002163.1|	EMBL	CDS	506918	507307	.	+	0	ID=cds-CAL34690.1;Parent=gene-Cj0544;Dbxref=EnsemblGenomes-Gn:Cj0544,EnsemblGenomes-Tr:CAL34690,GOA:Q0PAX2,InterPro:IPR007313,UniProtKB/TrEMBL:Q0PAX2,NCBI_GP:CAL34690.1;Name=CAL34690.1;Note=Original (2000) note: Cj0544%2C probable integral membrane protein%2C len: 129 aa%3B no Hp match%3B~Updated (2006) note: Three probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0544;product=putative integral memnbrane protein;protein_id=CAL34690.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	506945	507001	.	+	.	ID=id-Cj0544;Note=3 probable transmembrane helices predicted for Cj0544 by TMHMM2.0 at aa 10-28%2C 30-49 and 69-100;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0544;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	507005	507064	.	+	.	ID=id-Cj0544;Note=3 probable transmembrane helices predicted for Cj0544 by TMHMM2.0 at aa 10-28%2C 30-49 and 69-100;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0544;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	507122	507217	.	+	.	ID=id-Cj0544;Note=3 probable transmembrane helices predicted for Cj0544 by TMHMM2.0 at aa 10-28%2C 30-49 and 69-100;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0544;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	507304	508227	.	+	.	ID=gene-Cj0545;Name=hemC;gbkey=Gene;gene=hemC;gene_biotype=protein_coding;locus_tag=Cj0545
gi|15791399|ref|NC_002163.1|	EMBL	CDS	507304	508227	.	+	0	ID=cds-CAL34691.1;Parent=gene-Cj0545;Dbxref=EnsemblGenomes-Gn:Cj0545,EnsemblGenomes-Tr:CAL34691,GOA:Q9PHW9,InterPro:IPR000860,InterPro:IPR022417,InterPro:IPR022418,InterPro:IPR022419,NCBI_GP:CAL34691.1;Name=CAL34691.1;Note=Original (2000) note: Cj0545%2C hemC%2C probable porphobilinogen deaminase%2C len: 307 aa%3B highly similar to many e.g. HEM3_ECOLI porphobilinogen deaminase (EC 4.3.1.8) (313 aa)%2C fasta scores%3B opt: 883 z-score: 1517.1 E(): 0%2C 49.0%25 identity in 300 aa overlap. 51.5%25 identity to HP0237. Contains PS00533 Porphobilinogen deaminase cofactor-binding site%3B~Updated (2006) note: Pfam domains PF01379 Porphobilinogen deaminase%2C dipyromethane cofactor binding domain and PF03900 Porphobilinogen deaminase%2C C-terminal domain were identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Heme%3B~PMID:1747120;gbkey=CDS;gene=hemC;inference=protein motif:Prosite:PS00533;locus_tag=Cj0545;product=porphobilinogen deaminase;protein_id=CAL34691.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	507307	507945	.	+	.	ID=id-Cj0545;Note=HMMPfam hit to PF01379%2C Porphobilinogen deaminase%2Cdipyrometh%2C score 5.7e-107;gbkey=misc_feature;gene=hemC;inference=protein motif:Pfam:PF01379;locus_tag=Cj0545
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	507967	508188	.	+	.	ID=id-Cj0545-2;Note=HMMPfam hit to PF03900%2C Porphobilinogen deaminase%2CC-terminal%2C score 7.3e-15;gbkey=misc_feature;gene=hemC;inference=protein motif:Pfam:PF03900;locus_tag=Cj0545
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	507985	508035	.	+	.	ID=id-Cj0545-3;Note=PS00533 Porphobilinogen deaminase cofactor-binding site;gbkey=misc_feature;gene=hemC;inference=protein motif:Prosite:PS00533;locus_tag=Cj0545
gi|15791399|ref|NC_002163.1|	EMBL	gene	508224	510026	.	+	.	ID=gene-Cj0546;Name=ubiD;gbkey=Gene;gene=ubiD;gene_biotype=protein_coding;locus_tag=Cj0546
gi|15791399|ref|NC_002163.1|	EMBL	CDS	508224	510026	.	+	0	ID=cds-CAL34692.1;Parent=gene-Cj0546;Dbxref=EnsemblGenomes-Gn:Cj0546,EnsemblGenomes-Tr:CAL34692,GOA:Q0PAX0,InterPro:IPR002830,InterPro:IPR012349,InterPro:IPR022390,UniProtKB/TrEMBL:Q0PAX0,NCBI_GP:CAL34692.1;Name=CAL34692.1;Note=Original (2000) note: Cj0546%2C unknown%2C len: 600 aa%3B similar to many hypothetical proteins e.g. YIGC_ECOLI (497 aa)%2C fasta scores%3B opt: 837 z-score: 852.4 E(): 0%2C 32.7%25 identity in 459 aa overlap. 51.6%25 identity to HP0396%3B~Updated (2006) note: Pfam domain PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase identified within CDS. Product modified to more specific family member due to motif match. Characterised within Escherichia coli with marginal identity scores. Sequence alignment was partial. Putative kept within product function. Functional classification - Misc%3B~PMID:782527%2C PMID:11029449;gbkey=CDS;gene=ubiD;inference=protein motif:Pfam:PF01977;locus_tag=Cj0546;product=putative 3-octaprenyl-4-hydroxybenzoate carboxy-lyase;protein_id=CAL34692.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	508236	509504	.	+	.	ID=id-Cj0546;Note=HMMPfam hit to PF01977%2C3-octaprenyl-4-hydroxybenzoate carboxy-lyase%2C score 4.7e-139;gbkey=misc_feature;gene=ubiD;inference=protein motif:Pfam:PF01977;locus_tag=Cj0546
gi|15791399|ref|NC_002163.1|	EMBL	gene	510184	510549	.	+	.	ID=gene-Cj0547;Name=flaG;gbkey=Gene;gene=flaG;gene_biotype=protein_coding;locus_tag=Cj0547
gi|15791399|ref|NC_002163.1|	EMBL	CDS	510184	510549	.	+	0	ID=cds-CAL34693.1;Parent=gene-Cj0547;Dbxref=EnsemblGenomes-Gn:Cj0547,EnsemblGenomes-Tr:CAL34693,InterPro:IPR005186,UniProtKB/TrEMBL:Q0PAW9,NCBI_GP:CAL34693.1;Name=CAL34693.1;Note=Original (2000) note: Cj0547%2C flaG%2C possible flagellar protein%2C len: 121 aa%3B some similarity to e.g. TR:O33420 (EMBL:L81176) Pseudomonas aeruginosa FLAG (128 aa)%2C fasta scores%3B opt: 169 z-score: 197.2 E(): 0.0011%2C31.4%25 identity in 102 aa overlap. 43.5%25 identity to HP0751%3B~Updated (2006) note: Pfam domain PF03646 FlaG protein was identified within CDS. Further support given to product function. The FlgB%2C FlgC and FlgG proteins are components of the proximal and distal rods%3B FliF forms the M-ring that anchors the rod assembly to the membrane. Characterised within Pseudomonas aeruginosa with marginal identity score. Using this extra information and also taking into account the appropriate motif match%2C putative was removed from the product function. Functional classification - Surface structures%3B~PMID:9488388%2C PMID:10559162%2C PMID:2646286;gbkey=CDS;gene=flaG;inference=protein motif:Pfam:PF03646;locus_tag=Cj0547;product=flagellar protein;protein_id=CAL34693.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	510220	510543	.	+	.	ID=id-Cj0547;Note=HMMPfam hit to PF03646%2C FlaG protein%2C score 4.7e-42;gbkey=misc_feature;gene=flaG;inference=protein motif:Pfam:PF03646;locus_tag=Cj0547
gi|15791399|ref|NC_002163.1|	EMBL	gene	510552	512480	.	+	.	ID=gene-Cj0548;Name=fliD;gbkey=Gene;gene=fliD;gene_biotype=protein_coding;locus_tag=Cj0548
gi|15791399|ref|NC_002163.1|	EMBL	CDS	510552	512480	.	+	0	ID=cds-CAL34694.1;Parent=gene-Cj0548;Dbxref=EnsemblGenomes-Gn:Cj0548,EnsemblGenomes-Tr:CAL34694,GOA:Q9PHW6,InterPro:IPR003481,InterPro:IPR010809,InterPro:IPR010810,NCBI_GP:CAL34694.1;Name=CAL34694.1;Note=Original (2000) note: Cj0548%2C fliD%2C probable flagellar hook-associated protein%2C len: 642 aa%3B similar to e.g. FLID_ECOLI flagellar hook-associated protein 2 (467 aa)%2C fasta scores%3B opt: 217 z-score: 274.0 E(): 5.8e-08%2C26.0%25 identity in 511 aa overlap. 25.5%25 identity to HP0752%3B~Updated (2006) note: Pfam domain PF02465 Flagellar hook-associated protein 2 C-terminus%2C PF07196 Flagellin hook IN motif and PF07195 Flagellar hook-associated protein 2 were all identified within CDS. Further support given to product function. Characterised within Helicobacter pylori with acceptable identity score. Putative not added to product function. Functional classification - Surface structures%3B~PMID:10559162;gbkey=CDS;gene=fliD;inference=protein motif:Pfam:PF07196;locus_tag=Cj0548;product=flagellar hook-associated protein;protein_id=CAL34694.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	510585	510890	.	+	.	ID=id-Cj0548;Note=HMMPfam hit to PF02465%2C Flagellar hook-associated protein%2C score 2.3e-33;gbkey=misc_feature;gene=fliD;inference=protein motif:Pfam:PF02465;locus_tag=Cj0548
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	510954	511127	.	+	.	ID=id-Cj0548-2;Note=HMMPfam hit to PF07196%2C Flagellin hook IN motif%2Cscore 2.1e-10;gbkey=misc_feature;gene=fliD;inference=protein motif:Pfam:PF07196;locus_tag=Cj0548
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	511317	512042	.	+	.	ID=id-Cj0548-3;Note=HMMPfam hit to PF07195%2C Flagellar hook-associated protein%2C score 4e-75;gbkey=misc_feature;gene=fliD;inference=protein motif:Pfam:PF07195;locus_tag=Cj0548
gi|15791399|ref|NC_002163.1|	EMBL	gene	512492	512878	.	+	.	ID=gene-Cj0549;Name=fliS;gbkey=Gene;gene=fliS;gene_biotype=protein_coding;locus_tag=Cj0549
gi|15791399|ref|NC_002163.1|	EMBL	CDS	512492	512878	.	+	0	ID=cds-CAL34695.1;Parent=gene-Cj0549;Dbxref=EnsemblGenomes-Gn:Cj0549,EnsemblGenomes-Tr:CAL34695,GOA:Q0PAW7,InterPro:IPR003713,UniProtKB/TrEMBL:Q0PAW7,NCBI_GP:CAL34695.1;Name=CAL34695.1;Note=Original (2000) note: Cj0549%2C fliS%2C probable flagellar protein%2C len: 128 aa%3B similar to e.g. FLIS_SALTY flagellar protein FLIS (135 aa)%2C fasta scores%3B opt: 190 z-score: 343.0 E(): 8.2e-12%2C 34.2%25 identity in 117 aa overlap. 60.5%25 identity to HP0753%3B~Updated (2006) note: Pfam domain PF02561 Flagellar protein FliS was identified within CDS. Further support given to product function. Characterised within Bacillus subtilis and others with marginal identity scores. Putative not added to product function. Functional classification - Surface structures%3B~PMID:8195064%2C PMID:1527488%2C PMID:10559162;gbkey=CDS;gene=fliS;inference=protein motif:Pfam:PF02561;locus_tag=Cj0549;product=flagellar protein;protein_id=CAL34695.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	512495	512863	.	+	.	ID=id-Cj0549;Note=HMMPfam hit to PF02561%2C Flagellar protein FliS%2Cscore 7.5e-35;gbkey=misc_feature;gene=fliS;inference=protein motif:Pfam:PF02561;locus_tag=Cj0549
gi|15791399|ref|NC_002163.1|	EMBL	gene	512859	513134	.	+	.	ID=gene-Cj0550;Name=Cj0550;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0550
gi|15791399|ref|NC_002163.1|	EMBL	CDS	512859	513134	.	+	0	ID=cds-CAL34696.1;Parent=gene-Cj0550;Dbxref=EnsemblGenomes-Gn:Cj0550,EnsemblGenomes-Tr:CAL34696,UniProtKB/TrEMBL:Q0PAW6,NCBI_GP:CAL34696.1;Name=CAL34696.1;Note=Original (2000) note: Cj0550%2C unknown%2C len: 91 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0550;product=hypothetical protein Cj0550;protein_id=CAL34696.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	513138	513451	.	-	.	ID=gene-rnpB;Name=rnpB;gbkey=Gene;gene=rnpB;gene_biotype=misc_RNA
gi|15791399|ref|NC_002163.1|	EMBL	transcript	513138	513451	.	-	.	ID=rna-rnpB;Parent=gene-rnpB;Note=Updated (2006) note: Rfam RF00010%2C Bacterial RNase P class A has now been identified within CDS. Further support given to product function%3B~rnpB%2C RNA component of RNase P%2C similar to many e.g. EMBL:BBRNASEP Z30953 B.burgdorferi (B31) RNase P RNA gene%2C wublastn score%3B E %3D 9.3e-14%2C 69%25 identity in 204 bp overlap and 74%25 identity in 71 bp overlap;gbkey=misc_RNA;gene=rnpB;product=RNA component of RNase P
gi|15791399|ref|NC_002163.1|	EMBL	exon	513138	513451	.	-	.	ID=exon-rnpB-1;Parent=rna-rnpB;Note=Updated (2006) note: Rfam RF00010%2C Bacterial RNase P class A has now been identified within CDS. Further support given to product function%3B~rnpB%2C RNA component of RNase P%2C similar to many e.g. EMBL:BBRNASEP Z30953 B.burgdorferi (B31) RNase P RNA gene%2C wublastn score%3B E %3D 9.3e-14%2C 69%25 identity in 204 bp overlap and 74%25 identity in 71 bp overlap;gbkey=misc_RNA;gene=rnpB;product=RNA component of RNase P
gi|15791399|ref|NC_002163.1|	EMBL	gene	513566	514135	.	+	.	ID=gene-Cj0551;Name=efp;gbkey=Gene;gene=efp;gene_biotype=protein_coding;locus_tag=Cj0551
gi|15791399|ref|NC_002163.1|	EMBL	CDS	513566	514135	.	+	0	ID=cds-CAL34697.1;Parent=gene-Cj0551;Dbxref=EnsemblGenomes-Gn:Cj0551,EnsemblGenomes-Tr:CAL34697,GOA:Q9PHW3,InterPro:IPR001059,InterPro:IPR008991,InterPro:IPR011768,InterPro:IPR012340,InterPro:IPR013185,InterPro:IPR014722,InterPro:IPR015365,InterPro:IPR020599,NCBI_GP:CAL34697.1;Name=CAL34697.1;Note=Original (2000) note: Cj0551%2C efp%2C probable elongation factor P%2C len: 189 aa%3B highly similar to many e.g. EFP_BACSU elongation factor P (EF-P) (185 aa)%2C fasta scores%3B opt: 586 z-score: 959.7 E(): 0%2C 45.9%25 identity in 183 aa overlap. 73.5%25 identity to HP0177. Contains Pfam match to entry PF01132 EFP%2C Elongation factor P (EF-P)%2Cscore 373.00%2C E-value 3e-108%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Protein translation and modification%3B~PMID:9195040;gbkey=CDS;gene=efp;inference=protein motif:Pfam:PF01132;locus_tag=Cj0551;product=elongation factor P;protein_id=CAL34697.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	513572	514126	.	+	.	ID=id-Cj0551;Note=HMMPfam hit to PF01132%2C Elongation factor P (EF-P)%2Cscore 1.7e-109;gbkey=misc_feature;gene=efp;inference=protein motif:Pfam:PF01132;locus_tag=Cj0551
gi|15791399|ref|NC_002163.1|	EMBL	gene	514295	514987	.	+	.	ID=gene-Cj0552;Name=Cj0552;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0552
gi|15791399|ref|NC_002163.1|	EMBL	CDS	514295	514987	.	+	0	ID=cds-CAL34698.1;Parent=gene-Cj0552;Dbxref=EnsemblGenomes-Gn:Cj0552,EnsemblGenomes-Tr:CAL34698,InterPro:IPR010374,UniProtKB/TrEMBL:Q0PAW4,NCBI_GP:CAL34698.1;Name=CAL34698.1;Note=Original (2000) note: Cj0552%2C unknown%2C len: 230 aa%3B no Hp match. Hydrophobic%3B~Updated (2006) note: Pfam domain PF06149 Protein of unknown function (DUF969) identified within CDS. This is a family of uncharacterised bacterial membrane proteins. Also identified were four probable transmembrane helices predicted by TMHMM2.0. Product function has been changed due to these results. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0552;product=putative membrane protein;protein_id=CAL34698.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	514295	514960	.	+	.	ID=id-Cj0552;Note=HMMPfam hit to PF06149%2C Protein of unknown function (DUF969)%2C score 3.4e-157;gbkey=misc_feature;inference=protein motif:Pfam:PF06149;locus_tag=Cj0552
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	514352	514420	.	+	.	ID=id-Cj0552-2;Note=4 probable transmembrane helices predicted for Cj0552 by TMHMM2.0 at aa 20-42%2C 52-71%2C 99-121 and 192-214;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0552;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	514448	514507	.	+	.	ID=id-Cj0552-2;Note=4 probable transmembrane helices predicted for Cj0552 by TMHMM2.0 at aa 20-42%2C 52-71%2C 99-121 and 192-214;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0552;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	514589	514657	.	+	.	ID=id-Cj0552-2;Note=4 probable transmembrane helices predicted for Cj0552 by TMHMM2.0 at aa 20-42%2C 52-71%2C 99-121 and 192-214;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0552;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	514868	514936	.	+	.	ID=id-Cj0552-2;Note=4 probable transmembrane helices predicted for Cj0552 by TMHMM2.0 at aa 20-42%2C 52-71%2C 99-121 and 192-214;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0552;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	514974	515927	.	+	.	ID=gene-Cj0553;Name=Cj0553;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0553
gi|15791399|ref|NC_002163.1|	EMBL	CDS	514974	515927	.	+	0	ID=cds-CAL34699.1;Parent=gene-Cj0553;Dbxref=EnsemblGenomes-Gn:Cj0553,EnsemblGenomes-Tr:CAL34699,InterPro:IPR009323,UniProtKB/TrEMBL:Q0PAW3,NCBI_GP:CAL34699.1;Name=CAL34699.1;Note=Original (2000) note: Cj0553%2C probable integral membrane protein%2C len: 317 aa%3B no Hp match%3B~Updated (2006) note: Pfam domain PF06166 Protein of unknown function (DUF979) identified within CDS. This family consists of several putative bacterial membrane proteins. The function of this family is unclear. Also identified were nine probable transmembrane helices predicted by TMHMM2.0. Further support for product function. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0553;product=putative integral membrane protein;protein_id=CAL34699.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	514983	515918	.	+	.	ID=id-Cj0553;Note=HMMPfam hit to PF06166%2C Protein of unknown function (DUF979)%2C score 4.2e-214;gbkey=misc_feature;inference=protein motif:Pfam:PF06166;locus_tag=Cj0553
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	514989	515048	.	+	.	ID=id-Cj0553-2;Note=9 probable transmembrane helices predicted for Cj0553 by TMHMM2.0 at aa 6-25%2C 46-68%2C 100-122%2C 129-151%2C166-188%2C 201-223%2C 228-245%2C 252-274 and 294-315;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0553;part=1/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	515109	515177	.	+	.	ID=id-Cj0553-2;Note=9 probable transmembrane helices predicted for Cj0553 by TMHMM2.0 at aa 6-25%2C 46-68%2C 100-122%2C 129-151%2C166-188%2C 201-223%2C 228-245%2C 252-274 and 294-315;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0553;part=2/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	515271	515339	.	+	.	ID=id-Cj0553-2;Note=9 probable transmembrane helices predicted for Cj0553 by TMHMM2.0 at aa 6-25%2C 46-68%2C 100-122%2C 129-151%2C166-188%2C 201-223%2C 228-245%2C 252-274 and 294-315;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0553;part=3/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	515358	515426	.	+	.	ID=id-Cj0553-2;Note=9 probable transmembrane helices predicted for Cj0553 by TMHMM2.0 at aa 6-25%2C 46-68%2C 100-122%2C 129-151%2C166-188%2C 201-223%2C 228-245%2C 252-274 and 294-315;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0553;part=4/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	515469	515537	.	+	.	ID=id-Cj0553-2;Note=9 probable transmembrane helices predicted for Cj0553 by TMHMM2.0 at aa 6-25%2C 46-68%2C 100-122%2C 129-151%2C166-188%2C 201-223%2C 228-245%2C 252-274 and 294-315;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0553;part=5/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	515574	515642	.	+	.	ID=id-Cj0553-2;Note=9 probable transmembrane helices predicted for Cj0553 by TMHMM2.0 at aa 6-25%2C 46-68%2C 100-122%2C 129-151%2C166-188%2C 201-223%2C 228-245%2C 252-274 and 294-315;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0553;part=6/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	515655	515708	.	+	.	ID=id-Cj0553-2;Note=9 probable transmembrane helices predicted for Cj0553 by TMHMM2.0 at aa 6-25%2C 46-68%2C 100-122%2C 129-151%2C166-188%2C 201-223%2C 228-245%2C 252-274 and 294-315;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0553;part=7/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	515727	515795	.	+	.	ID=id-Cj0553-2;Note=9 probable transmembrane helices predicted for Cj0553 by TMHMM2.0 at aa 6-25%2C 46-68%2C 100-122%2C 129-151%2C166-188%2C 201-223%2C 228-245%2C 252-274 and 294-315;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0553;part=8/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	515853	515918	.	+	.	ID=id-Cj0553-2;Note=9 probable transmembrane helices predicted for Cj0553 by TMHMM2.0 at aa 6-25%2C 46-68%2C 100-122%2C 129-151%2C166-188%2C 201-223%2C 228-245%2C 252-274 and 294-315;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0553;part=9/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	515121	515153	.	+	.	ID=id-Cj0553-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0553
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	515379	515411	.	+	.	ID=id-Cj0553-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0553
gi|15791399|ref|NC_002163.1|	EMBL	gene	515937	516941	.	+	.	ID=gene-Cj0554;Name=Cj0554;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0554
gi|15791399|ref|NC_002163.1|	EMBL	CDS	515937	516941	.	+	0	ID=cds-CAL34700.1;Parent=gene-Cj0554;Dbxref=EnsemblGenomes-Gn:Cj0554,EnsemblGenomes-Tr:CAL34700,InterPro:IPR021365,UniProtKB/TrEMBL:Q0PAW2,NCBI_GP:CAL34700.1;Name=CAL34700.1;Note=Original (2000) note: Cj0554%2C unknown%2C len: 334 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0554;product=hypothetical protein Cj0554;protein_id=CAL34700.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	517060	518352	.	+	.	ID=gene-Cj0555;Name=Cj0555;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0555
gi|15791399|ref|NC_002163.1|	EMBL	CDS	517060	518352	.	+	0	ID=cds-CAL34701.1;Parent=gene-Cj0555;Dbxref=EnsemblGenomes-Gn:Cj0555,EnsemblGenomes-Tr:CAL34701,InterPro:IPR009827,UniProtKB/TrEMBL:Q0PAW1,NCBI_GP:CAL34701.1;Name=CAL34701.1;Note=Original (2000) note: Cj0555%2C probable integral membrane protein%2C len: 430 aa%3B similar in N-terminus to an ORF within the Streptococcus pneumoniae cps3E and rpt pseudogene region TR:P72556 (EMBL:U66846) orf5 (197 aa)%2Cfasta scores%3B opt: 493 z-score: 726.3 E(): 3.7e-33%2C 47.4%25 identity in 152 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF07158 Dicarboxylate carrier protein MatC N-terminus identified within CDS. This family represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. MatC protein is an integral membrane protein that can function as a malonate carrier (PMID:9826185). Also identified were eleven probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member due to motif match. No specific characterisation has been carried out%2C so putative kept within product function. Functional classification - Carbohydrates%2C organic acids and alcohols%3B~PMID:9826185;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0555;product=putative dicarboxylate carrier protein MatC;protein_id=CAL34701.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	517060	517506	.	+	.	ID=id-Cj0555;Note=HMMPfam hit to PF07158%2C Dicarboxylate carrier protein MatC N-terminu%2C score 5e-36;gbkey=misc_feature;inference=protein motif:Pfam:PF07158;locus_tag=Cj0555
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	517063	517119	.	+	.	ID=id-Cj0555-2;Note=11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20%2C 24-41%2C 48-70%2C 94-116%2C137-159%2C 179-201%2C 222-244%2C 259-276%2C 281-303%2C 323-345 and 407-429;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0555;part=1/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	517129	517182	.	+	.	ID=id-Cj0555-2;Note=11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20%2C 24-41%2C 48-70%2C 94-116%2C137-159%2C 179-201%2C 222-244%2C 259-276%2C 281-303%2C 323-345 and 407-429;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0555;part=2/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	517201	517269	.	+	.	ID=id-Cj0555-2;Note=11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20%2C 24-41%2C 48-70%2C 94-116%2C137-159%2C 179-201%2C 222-244%2C 259-276%2C 281-303%2C 323-345 and 407-429;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0555;part=3/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	517339	517407	.	+	.	ID=id-Cj0555-2;Note=11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20%2C 24-41%2C 48-70%2C 94-116%2C137-159%2C 179-201%2C 222-244%2C 259-276%2C 281-303%2C 323-345 and 407-429;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0555;part=4/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	517468	517536	.	+	.	ID=id-Cj0555-2;Note=11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20%2C 24-41%2C 48-70%2C 94-116%2C137-159%2C 179-201%2C 222-244%2C 259-276%2C 281-303%2C 323-345 and 407-429;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0555;part=5/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	517594	517662	.	+	.	ID=id-Cj0555-2;Note=11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20%2C 24-41%2C 48-70%2C 94-116%2C137-159%2C 179-201%2C 222-244%2C 259-276%2C 281-303%2C 323-345 and 407-429;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0555;part=6/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	517723	517791	.	+	.	ID=id-Cj0555-2;Note=11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20%2C 24-41%2C 48-70%2C 94-116%2C137-159%2C 179-201%2C 222-244%2C 259-276%2C 281-303%2C 323-345 and 407-429;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0555;part=7/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	517834	517887	.	+	.	ID=id-Cj0555-2;Note=11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20%2C 24-41%2C 48-70%2C 94-116%2C137-159%2C 179-201%2C 222-244%2C 259-276%2C 281-303%2C 323-345 and 407-429;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0555;part=8/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	517900	517968	.	+	.	ID=id-Cj0555-2;Note=11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20%2C 24-41%2C 48-70%2C 94-116%2C137-159%2C 179-201%2C 222-244%2C 259-276%2C 281-303%2C 323-345 and 407-429;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0555;part=9/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	518026	518094	.	+	.	ID=id-Cj0555-2;Note=11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20%2C 24-41%2C 48-70%2C 94-116%2C137-159%2C 179-201%2C 222-244%2C 259-276%2C 281-303%2C 323-345 and 407-429;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0555;part=10/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	518278	518346	.	+	.	ID=id-Cj0555-2;Note=11 probable transmembrane helices predicted for Cj0555 by TMHMM2.0 at aa 2-20%2C 24-41%2C 48-70%2C 94-116%2C137-159%2C 179-201%2C 222-244%2C 259-276%2C 281-303%2C 323-345 and 407-429;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0555;part=11/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	518212	518244	.	+	.	ID=id-Cj0555-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0555
gi|15791399|ref|NC_002163.1|	EMBL	gene	518363	519160	.	+	.	ID=gene-Cj0556;Name=Cj0556;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0556
gi|15791399|ref|NC_002163.1|	EMBL	CDS	518363	519160	.	+	0	ID=cds-CAL34702.1;Parent=gene-Cj0556;Dbxref=EnsemblGenomes-Gn:Cj0556,EnsemblGenomes-Tr:CAL34702,GOA:Q0PAW0,InterPro:IPR006992,UniProtKB/TrEMBL:Q0PAW0,NCBI_GP:CAL34702.1;Name=CAL34702.1;Note=Original (2000) note: Cj0556%2C unknown%2C len: 265 aa%3B no Hp match%3B~Updated (2006) note: Pfam domain PF04909 Amidohydrolase identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF04909;locus_tag=Cj0556;product=putative amidohydrolase family protein;protein_id=CAL34702.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	518369	519157	.	+	.	ID=id-Cj0556;Note=HMMPfam hit to PF04909%2C Amidohydrolase%2C score 9.5e-37;gbkey=misc_feature;inference=protein motif:Pfam:PF04909;locus_tag=Cj0556
gi|15791399|ref|NC_002163.1|	EMBL	gene	519157	520242	.	-	.	ID=gene-Cj0557c;Name=Cj0557c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0557c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	519157	520242	.	-	0	ID=cds-CAL34703.1;Parent=gene-Cj0557c;Dbxref=EnsemblGenomes-Gn:Cj0557c,EnsemblGenomes-Tr:CAL34703,UniProtKB/TrEMBL:Q0PAV9,NCBI_GP:CAL34703.1;Name=CAL34703.1;Note=Original (2000) note: Cj0557c%2C probable integral membrane protein%2C len: 361 aa%3B similar in C terminus to hypothetical proteins from B. subtilis and E. coli: TR:O32225 (EMBL:O32225) YVAC (631 aa)%2C fasta scores%3B opt: 271 z-score: 562.0 E(): 5.2e-24%2C 29.9%25 identity in 187 aa overlap%2C and YHFK_ECOLI (696 aa)%2C fasta scores%3B opt: 182 z-score: 212.9 E(): 0.00015%2C 27.8%25 identity in 133 aa overlap. No Hp match%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Further support added to product function. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0557c;product=putative integral membrane protein;protein_id=CAL34703.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	519226	519294	.	-	.	ID=id-Cj0557c;Note=9 probable transmembrane helices predicted for Cj0557c by TMHMM2.0 at aa 23-45%2C 47-66%2C 86-108%2C 115-137%2C152-174%2C 187-209%2C 219-240%2C 283-302 and 317-339;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0557c;part=1/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	519337	519396	.	-	.	ID=id-Cj0557c;Note=9 probable transmembrane helices predicted for Cj0557c by TMHMM2.0 at aa 23-45%2C 47-66%2C 86-108%2C 115-137%2C152-174%2C 187-209%2C 219-240%2C 283-302 and 317-339;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0557c;part=2/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	519523	519588	.	-	.	ID=id-Cj0557c;Note=9 probable transmembrane helices predicted for Cj0557c by TMHMM2.0 at aa 23-45%2C 47-66%2C 86-108%2C 115-137%2C152-174%2C 187-209%2C 219-240%2C 283-302 and 317-339;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0557c;part=3/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	519616	519684	.	-	.	ID=id-Cj0557c;Note=9 probable transmembrane helices predicted for Cj0557c by TMHMM2.0 at aa 23-45%2C 47-66%2C 86-108%2C 115-137%2C152-174%2C 187-209%2C 219-240%2C 283-302 and 317-339;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0557c;part=4/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	519721	519789	.	-	.	ID=id-Cj0557c;Note=9 probable transmembrane helices predicted for Cj0557c by TMHMM2.0 at aa 23-45%2C 47-66%2C 86-108%2C 115-137%2C152-174%2C 187-209%2C 219-240%2C 283-302 and 317-339;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0557c;part=5/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	519832	519900	.	-	.	ID=id-Cj0557c;Note=9 probable transmembrane helices predicted for Cj0557c by TMHMM2.0 at aa 23-45%2C 47-66%2C 86-108%2C 115-137%2C152-174%2C 187-209%2C 219-240%2C 283-302 and 317-339;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0557c;part=6/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	519919	519987	.	-	.	ID=id-Cj0557c;Note=9 probable transmembrane helices predicted for Cj0557c by TMHMM2.0 at aa 23-45%2C 47-66%2C 86-108%2C 115-137%2C152-174%2C 187-209%2C 219-240%2C 283-302 and 317-339;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0557c;part=7/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	520045	520104	.	-	.	ID=id-Cj0557c;Note=9 probable transmembrane helices predicted for Cj0557c by TMHMM2.0 at aa 23-45%2C 47-66%2C 86-108%2C 115-137%2C152-174%2C 187-209%2C 219-240%2C 283-302 and 317-339;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0557c;part=8/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	520108	520176	.	-	.	ID=id-Cj0557c;Note=9 probable transmembrane helices predicted for Cj0557c by TMHMM2.0 at aa 23-45%2C 47-66%2C 86-108%2C 115-137%2C152-174%2C 187-209%2C 219-240%2C 283-302 and 317-339;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0557c;part=9/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	519847	519879	.	-	.	ID=id-Cj0557c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0557c
gi|15791399|ref|NC_002163.1|	EMBL	gene	520239	521471	.	-	.	ID=gene-Cj0558c;Name=proA;gbkey=Gene;gene=proA;gene_biotype=protein_coding;locus_tag=Cj0558c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	520239	521471	.	-	0	ID=cds-CAL34704.1;Parent=gene-Cj0558c;Dbxref=EnsemblGenomes-Gn:Cj0558c,EnsemblGenomes-Tr:CAL34704,GOA:P53000,InterPro:IPR000965,InterPro:IPR012134,InterPro:IPR015590,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR020593,NCBI_GP:CAL34704.1;Name=CAL34704.1;Note=Original (2000) note: Cj0558c%2C proA%2C gamma-glutamyl phosphate reductase%2C len: 410 aa%3B 98.8%25 identical to PROA_CAMJE gamma-glutamyl phosphate reductase (EC 1.2.1.41) (410 aa)%2C and similar to e.g. PROA_ECOLI (417 aa)%2C fasta scores%3B opt: 985 z-score: 1513.2 E(): 0%2C 38.6%25 identity in 407 aa overlap. No Hp match. Contains PS01223 Gamma-glutamyl phosphate reductase signature and Pfam match to entry PF00696 aakinase%2C Aspartate kinases%2CGlutamate kinases and Gamma glutamate phospho-reductases%2Cscore 219.50%2C E-value 5.1e-62%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Functional classification - Amino acid biosynthesis - Glutamate family%3B~PMID:8341262;gbkey=CDS;gene=proA;inference=protein motif:Prosite:PS01223;locus_tag=Cj0558c;product=gamma-glutamyl phosphate reductase;protein_id=CAL34704.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	520461	520526	.	-	.	ID=id-Cj0558c;Note=PS01223 Gamma-glutamyl phosphate reductase signature;gbkey=misc_feature;gene=proA;inference=protein motif:Prosite:PS01223;locus_tag=Cj0558c
gi|15791399|ref|NC_002163.1|	EMBL	gene	521542	522477	.	+	.	ID=gene-Cj0559;Name=Cj0559;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0559
gi|15791399|ref|NC_002163.1|	EMBL	CDS	521542	522477	.	+	0	ID=cds-CAL34705.1;Parent=gene-Cj0559;Dbxref=EnsemblGenomes-Gn:Cj0559,EnsemblGenomes-Tr:CAL34705,GOA:Q0PAV7,InterPro:IPR000103,InterPro:IPR001327,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:Q0PAV7,NCBI_GP:CAL34705.1;Name=CAL34705.1;Note=Original (2000) note: Cj0559%2C probable oxidoreductase%2C len: 311 aa%3B similar to members of the pyridine nucleotide-disulfide oxidoreductases class-II family e.g. R34K_CLOPA 34.2 KD protein in rubredoxin operon (308 aa)%2C fasta scores%3B opt: 217 z-score: 335.8 E(): 2.1e-11%2C 23.2%25 identity in 314 aa overlap%2C and TRXB_BACSU thioredoxin reductase (315 aa)%2C fasta scores%3B opt: 192 z-score: 279.9 E(): 2.7e-08%2C 25.9%25 identity in 313 aa overlap. 46.3%25 identity to HP1164. Contains possible N-terminal signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domain PF00070 Pyridine nucleotide-disulfide oxidoreductase identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0559;product=putative pyridine nucleotide-disulphide oxidoreductase;protein_id=CAL34705.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	521554	522423	.	+	.	ID=id-Cj0559;Note=HMMPfam hit to PF00070%2C Pyridine nucleotide-disulphide oxidoreducta%2C score 1.7e-25;gbkey=misc_feature;inference=protein motif:Pfam:PF00070;locus_tag=Cj0559
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	521563	521595	.	+	.	ID=id-Cj0559-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0559
gi|15791399|ref|NC_002163.1|	EMBL	gene	522658	523986	.	+	.	ID=gene-Cj0560;Name=Cj0560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0560
gi|15791399|ref|NC_002163.1|	EMBL	CDS	522658	523986	.	+	0	ID=cds-CAL34706.1;Parent=gene-Cj0560;Dbxref=EnsemblGenomes-Gn:Cj0560,EnsemblGenomes-Tr:CAL34706,GOA:Q0PAV6,InterPro:IPR002528,UniProtKB/TrEMBL:Q0PAV6,NCBI_GP:CAL34706.1;Name=CAL34706.1;Note=Original (2000) note: Cj0560%2C probable integral membrane protein%2C len: 442 aa%3B similar to many hypothetical proteins e.g. Y709_METJA MJ0709 (450 aa)%2Cfasta scores%3B opt: 402 z-score: 324.8 E(): 8.5e-11%2C 21.0%25 identity in 429 aa overlap. 26.3%25 identity to HP1184%3B~Updated (2006) note: Pfam domain PF01554 MatE identified within CDS. Prosite domain PS00589 PTS_HPR_SER%2CPhosphotransferase system%2C HPr serine phosphorylation site also identified. Twelve probable transmembrane helices predicted by TMHMM2.0. Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes%2C fluroquinolones%2Caminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria%2C archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions (which this one does). Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity scores has been carried out yet. Putative kept within product function. Literature search identified paper giving further clues to product function. Functional classification - Central intermediary metabolism -General%3B~PMID:16048946;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0560;product=putative MATE family transport protein;protein_id=CAL34706.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	522694	522759	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=1/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	522802	522870	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=2/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	522928	522996	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=3/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	523060	523128	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=4/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	523153	523221	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=5/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	523231	523299	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=6/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	523360	523428	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=7/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	523456	523524	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=8/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	523585	523653	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=9/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	523711	523779	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=10/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	523816	523884	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=11/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	523897	523956	.	+	.	ID=id-Cj0560;Note=12 probable transmembrane helices predicted for Cj0560 by TMHMM2.0 at aa 13-34%2C 49-71%2C 91-113%2C 135-157%2C166-188%2C 192-214%2C 235-257%2C 267-289%2C 310-332%2C 352-374%2C387-409 and 414-433;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0560;part=12/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	522715	523200	.	+	.	ID=id-Cj0560-2;Note=HMMPfam hit to PF01554%2C MatE%2C score 9.6e-25;gbkey=misc_feature;inference=protein motif:Pfam:PF01554;locus_tag=Cj0560
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	522937	522969	.	+	.	ID=id-Cj0560-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0560
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	523339	523386	.	+	.	ID=id-Cj0560-4;Note=PS00225 Crystallins beta and gamma 'Greek key' motif signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00225;locus_tag=Cj0560
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	523846	523878	.	+	.	ID=id-Cj0560-5;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0560
gi|15791399|ref|NC_002163.1|	EMBL	gene	524034	524963	.	-	.	ID=gene-Cj0561c;Name=Cj0561c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0561c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	524034	524963	.	-	0	ID=cds-CAL34707.1;Parent=gene-Cj0561c;Dbxref=EnsemblGenomes-Gn:Cj0561c,EnsemblGenomes-Tr:CAL34707,InterPro:IPR016896,UniProtKB/TrEMBL:Q0PAV5,NCBI_GP:CAL34707.1;Name=CAL34707.1;Note=Original (2000) note: Cj0561c%2C possible periplasmic protein%2C len: 309 aa%3B no Hp match%3B~Updated (2006) note: possible changed to putative. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0561c;product=putative periplasmic protein;protein_id=CAL34707.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	525117	526493	.	+	.	ID=gene-Cj0562;Name=dnaB;gbkey=Gene;gene=dnaB;gene_biotype=protein_coding;locus_tag=Cj0562
gi|15791399|ref|NC_002163.1|	EMBL	CDS	525117	526493	.	+	0	ID=cds-CAL34708.1;Parent=gene-Cj0562;Dbxref=EnsemblGenomes-Gn:Cj0562,EnsemblGenomes-Tr:CAL34708,GOA:Q0PAV4,InterPro:IPR003593,InterPro:IPR007692,InterPro:IPR007693,InterPro:IPR007694,InterPro:IPR016136,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAV4,NCBI_GP:CAL34708.1;Name=CAL34708.1;Note=Original (2000) note: Cj0562%2C dnaB%2C probable replicative DNA helicase%2C len: 458 aa%3B similar to many e.g. DNAB_ECOLI replicative DNA helicase (EC 3.6.1.-) (471 aa)%2C fasta scores%3B opt: 779 z-score: 1038.7 E(): 0%2C35.8%25 identity in 458 aa overlap. 38.1%25 identity to HP1362. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00772 DnaB%2C DnaB-like helicase%2C score 348.90%2C E-value 5.6e-101%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:6323420;gbkey=CDS;gene=dnaB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0562;product=replicative DNA helicase;protein_id=CAL34708.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	525123	525404	.	+	.	ID=id-Cj0562;Note=HMMPfam hit to PF00772%2C DnaB-like helicase N terminal domain%2C score 1.2e-24;gbkey=misc_feature;gene=dnaB;inference=protein motif:Pfam:PF00772;locus_tag=Cj0562
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	525615	526208	.	+	.	ID=id-Cj0562-2;Note=HMMPfam hit to PF03796%2C DnaB-like helicase C terminal domain%2C score 5.7e-117;gbkey=misc_feature;gene=dnaB;inference=protein motif:Pfam:PF03796;locus_tag=Cj0562
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	525699	525722	.	+	.	ID=id-Cj0562-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=dnaB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0562
gi|15791399|ref|NC_002163.1|	EMBL	gene	526556	527158	.	+	.	ID=gene-Cj0563;Name=Cj0563;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0563
gi|15791399|ref|NC_002163.1|	EMBL	CDS	526556	527158	.	+	0	ID=cds-CAL34709.1;Parent=gene-Cj0563;Dbxref=EnsemblGenomes-Gn:Cj0563,EnsemblGenomes-Tr:CAL34709,UniProtKB/TrEMBL:Q0PAV3,NCBI_GP:CAL34709.1;Name=CAL34709.1;Note=Original (2000) note: Cj0563%2C unknown%2C len: 200 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0563;product=hypothetical protein Cj0563;protein_id=CAL34709.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	527149	527355	.	+	.	ID=gene-Cj0564;Name=Cj0564;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0564
gi|15791399|ref|NC_002163.1|	EMBL	CDS	527149	527355	.	+	0	ID=cds-CAL34710.1;Parent=gene-Cj0564;Dbxref=EnsemblGenomes-Gn:Cj0564,EnsemblGenomes-Tr:CAL34710,UniProtKB/TrEMBL:Q0PAV2,NCBI_GP:CAL34710.1;Name=CAL34710.1;Note=Original (2000) note: Cj0564%2C probable integral membrane protein%2C len: 68 aa%3B no Hp match%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0564;product=putative integral membrane protein;protein_id=CAL34710.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	527167	527262	.	+	.	ID=id-Cj0564;Note=2 probable transmembrane helices predicted for Cj0564 by TMHMM2.0 at aa 7-38 and 43-65;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0564;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	527275	527343	.	+	.	ID=id-Cj0564;Note=2 probable transmembrane helices predicted for Cj0564 by TMHMM2.0 at aa 7-38 and 43-65;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0564;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	527378	527389	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:527378..527389;Note=G(12);gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	527436	528163	.	+	.	ID=gene-Cj0565;Name=Cj0565;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Cj0565;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	527436	527714	.	+	0	ID=cds-Cj0565;Parent=gene-Cj0565;Note=Original (2000) note: Cj0565%2C probable pseudogene%2Clen: 725 bp%3B similar to three consecutive genes in Hp%3B HP1587%2C HP1588 and HP1589%3B~Updated (2006) note: Pfam domain PF03667 Uncharacterised protein family (UPF0174) identified within CDS. Conserved introduced to product function as motif identified. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF03667;locus_tag=Cj0565;product=pseudogene (conserved hypothetical protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	527714	528163	.	+	0	ID=cds-Cj0565;Parent=gene-Cj0565;Note=Original (2000) note: Cj0565%2C probable pseudogene%2Clen: 725 bp%3B similar to three consecutive genes in Hp%3B HP1587%2C HP1588 and HP1589%3B~Updated (2006) note: Pfam domain PF03667 Uncharacterised protein family (UPF0174) identified within CDS. Conserved introduced to product function as motif identified. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF03667;locus_tag=Cj0565;product=pseudogene (conserved hypothetical protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	527541	527714	.	+	.	ID=id-Cj0565;Note=HMMPfam hit to PF03667%2C Uncharacterised protein family (UPF0174)%2C score 3.1e-51;gbkey=misc_feature;inference=protein motif:Pfam:PF03667;is_ordered=true;locus_tag=Cj0565;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	527714	528154	.	+	.	ID=id-Cj0565;Note=HMMPfam hit to PF03667%2C Uncharacterised protein family (UPF0174)%2C score 3.1e-51;gbkey=misc_feature;inference=protein motif:Pfam:PF03667;is_ordered=true;locus_tag=Cj0565;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	528182	529648	.	+	.	ID=gene-Cj0566;Name=Cj0566;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0566
gi|15791399|ref|NC_002163.1|	EMBL	CDS	528182	529648	.	+	0	ID=cds-CAL34712.1;Parent=gene-Cj0566;Dbxref=EnsemblGenomes-Gn:Cj0566,EnsemblGenomes-Tr:CAL34712,UniProtKB/TrEMBL:Q0PAV1,NCBI_GP:CAL34712.1;Name=CAL34712.1;Note=Original (2000) note: Cj0566%2C unknown%2C len: 488 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0566;product=hypothetical protein Cj0566;protein_id=CAL34712.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	529659	529772	.	+	.	ID=gene-Cj0567;Name=Cj0567;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0567
gi|15791399|ref|NC_002163.1|	EMBL	CDS	529659	529772	.	+	0	ID=cds-CAL34713.1;Parent=gene-Cj0567;Dbxref=EnsemblGenomes-Gn:Cj0567,EnsemblGenomes-Tr:CAL34713,UniProtKB/TrEMBL:Q0PAV0,NCBI_GP:CAL34713.1;Name=CAL34713.1;Note=Original (2000) note: Cj0567%2C unknown%2C len: 37 aa%3B no Hp match%3B~Updated (2006) note: Paper identified linking product function to iron transport or metabolism. Functional classification - Unknown%3B~PMID:15632442;gbkey=CDS;locus_tag=Cj0567;product=hypothetical protein Cj0567;protein_id=CAL34713.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	529974	530255	.	+	.	ID=gene-Cj0568;Name=Cj0568;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0568
gi|15791399|ref|NC_002163.1|	EMBL	CDS	529974	530255	.	+	0	ID=cds-CAL34714.1;Parent=gene-Cj0568;Dbxref=EnsemblGenomes-Gn:Cj0568,EnsemblGenomes-Tr:CAL34714,UniProtKB/TrEMBL:Q0PAU9,NCBI_GP:CAL34714.1;Name=CAL34714.1;Note=Original (2000) note: Cj0568%2C unknown%2C len: 93 aa%3B no Hp match%3B~Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0. Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0568;product=hypothetical protein Cj0568;protein_id=CAL34714.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	530061	530120	.	+	.	ID=id-Cj0568;Note=1 probable transmembrane helix predicted for Cj0568 by TMHMM2.0 at aa 30-49;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0568
gi|15791399|ref|NC_002163.1|	EMBL	gene	530261	531130	.	+	.	ID=gene-Cj0569;Name=Cj0569;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0569
gi|15791399|ref|NC_002163.1|	EMBL	CDS	530261	531130	.	+	0	ID=cds-CAL34715.1;Parent=gene-Cj0569;Dbxref=EnsemblGenomes-Gn:Cj0569,EnsemblGenomes-Tr:CAL34715,UniProtKB/TrEMBL:Q0PAU8,NCBI_GP:CAL34715.1;Name=CAL34715.1;Note=Original (2000) note: Cj0569%2C unknown%2C len: 289 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0569;product=hypothetical protein Cj0569;protein_id=CAL34715.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	531139	532206	.	+	.	ID=gene-Cj0570;Name=Cj0570;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0570
gi|15791399|ref|NC_002163.1|	EMBL	CDS	531139	532206	.	+	0	ID=cds-CAL34716.1;Parent=gene-Cj0570;Dbxref=EnsemblGenomes-Gn:Cj0570,EnsemblGenomes-Tr:CAL34716,UniProtKB/TrEMBL:Q0PAU7,NCBI_GP:CAL34716.1;Name=CAL34716.1;Note=Original (2000) note: Cj0570%2C probable ATP/GTP binding protein%2C len: 355 aa%3B 85.1%25 identity to HP0729. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0570;product=putative ATP/GTP binding protein;protein_id=CAL34716.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	531904	531927	.	+	.	ID=id-Cj0570;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0570
gi|15791399|ref|NC_002163.1|	EMBL	gene	532203	533075	.	+	.	ID=gene-Cj0571;Name=Cj0571;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0571
gi|15791399|ref|NC_002163.1|	EMBL	CDS	532203	533075	.	+	0	ID=cds-CAL34717.1;Parent=gene-Cj0571;Dbxref=EnsemblGenomes-Gn:Cj0571,EnsemblGenomes-Tr:CAL34717,InterPro:IPR011991,InterPro:IPR013196,InterPro:IPR026881,UniProtKB/TrEMBL:Q0PAU6,NCBI_GP:CAL34717.1;Name=CAL34717.1;Note=Original (2000) note: Cj0571%2C possible transcriptional regulator%3B len: 290 aa%3B similar in C-terminus to two hypothetical deoR family transcriptional regulators from E. coli%3B YFJR_ECOLI (233 aa)%2C fasta scores%3B opt: 279 z-score: 374.9 E(): 1.4e-13%2C 27.7%25 identity in 202 aa overlap%2C and YAFY_ECOLI (285 aa)%2C fasta scores%3B opt: 167 z-score: 203.3 E(): 0.0005%2C 40.4%25 identity in 57 aa overlap. No Hp match%2C Contains probable helix-turn-helix motif at aa 25-46 (Score 1541%2C +4.44 SD)%3B~Updated (2006) note: No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Literature search identified paper linking product function to be involved in the stringent and heat shock responses within gut colonization. Functional classification - Broad regulatory functions%3B~PMID:15731081;gbkey=CDS;locus_tag=Cj0571;product=putative transcriptional regulator;protein_id=CAL34717.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	533097	533172	.	-	.	ID=gene-tRNA-Met;Name=tRNA-Met;gbkey=Gene;gene=tRNA-Met;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	533097	533172	.	-	.	ID=rna-tRNA-Met;Parent=gene-tRNA-Met;Note=tRNA Met anticodon CAT%2C Cove score 88.22;gbkey=tRNA;gene=tRNA-Met;product=tRNA-Met
gi|15791399|ref|NC_002163.1|	EMBL	exon	533097	533172	.	-	.	ID=exon-tRNA-Met-1;Parent=rna-tRNA-Met;Note=tRNA Met anticodon CAT%2C Cove score 88.22;gbkey=tRNA;gene=tRNA-Met;product=tRNA-Met
gi|15791399|ref|NC_002163.1|	EMBL	gene	533206	533280	.	-	.	ID=gene-tRNA-Gln;Name=tRNA-Gln;gbkey=Gene;gene=tRNA-Gln;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	533206	533280	.	-	.	ID=rna-tRNA-Gln;Parent=gene-tRNA-Gln;Note=tRNA Gln anticodon TTG%2C Cove score 71.34;gbkey=tRNA;gene=tRNA-Gln;product=tRNA-Gln
gi|15791399|ref|NC_002163.1|	EMBL	exon	533206	533280	.	-	.	ID=exon-tRNA-Gln-1;Parent=rna-tRNA-Gln;Note=tRNA Gln anticodon TTG%2C Cove score 71.34;gbkey=tRNA;gene=tRNA-Gln;product=tRNA-Gln
gi|15791399|ref|NC_002163.1|	EMBL	gene	533373	534392	.	+	.	ID=gene-Cj0572;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=Cj0572
gi|15791399|ref|NC_002163.1|	EMBL	CDS	533373	534392	.	+	0	ID=cds-CAL34718.1;Parent=gene-Cj0572;Dbxref=EnsemblGenomes-Gn:Cj0572,EnsemblGenomes-Tr:CAL34718,GOA:Q9PHU4,InterPro:IPR000422,InterPro:IPR000926,InterPro:IPR016299,InterPro:IPR017945,NCBI_GP:CAL34718.1;Name=CAL34718.1;Note=Original (2000) note: Cj0572%2C ribA%2C probable GTP cyclohydrolase II / 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C len: 339 aa%3B similar to e.g. GCH2_BACSU GTP cyclohydrolase II (EC 3.5.4.25) / 3%2C4-dihydroxy-2-butanone 4-phosphate synthase (398 aa)%2C fasta scores%3B opt: 688 z-score: 1219.9 E(): 0%2C 38.2%25 identity in 369 aa overlap. 50.0%25 identity to HP0804. Contains Pfam match to entry PF00926 DHBP_synthase%2C 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%2C score 384.00%2C E-value 1.5e-111%3B~Updated (2006) note: Characterised within Helicobacter pylori and Bacillus subtilis with acceptable identity scores. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Riboflavin%3B~PMID:11024263%2C PMID:1597419%2C PMID:8320220;gbkey=CDS;gene=ribA;inference=protein motif:Pfam:PF00926;locus_tag=Cj0572;product=GTP cyclohydrolase II / 3%2C4-dihydroxy-2-butanone 4-phosphate synthase;protein_id=CAL34718.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	533373	533648	.	+	.	ID=id-Cj0572;Note=PS00430 TonB-dependent receptor proteins signature 1;gbkey=misc_feature;gene=ribA;inference=protein motif:Prosite:PS00430;locus_tag=Cj0572
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	533388	533972	.	+	.	ID=id-Cj0572-2;Note=HMMPfam hit to PF00926%2C 3%2C4-dihydroxy-2-butanone 4-phosphate sy%2C score 6.2e-114;gbkey=misc_feature;gene=ribA;inference=protein motif:Pfam:PF00926;locus_tag=Cj0572
gi|15791399|ref|NC_002163.1|	EMBL	gene	534404	534847	.	+	.	ID=gene-Cj0573;Name=Cj0573;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0573
gi|15791399|ref|NC_002163.1|	EMBL	CDS	534404	534847	.	+	0	ID=cds-CAL34719.1;Parent=gene-Cj0573;Dbxref=EnsemblGenomes-Gn:Cj0573,EnsemblGenomes-Tr:CAL34719,GOA:Q0PAU4,InterPro:IPR003789,InterPro:IPR019004,InterPro:IPR023168,UniProtKB/TrEMBL:Q0PAU4,NCBI_GP:CAL34719.1;Name=CAL34719.1;Note=Original (2000) note: Cj0573%2C unknown%2C len: 147 aa%3B similar to several hypothetical proteins e.g.YQEY_BACSU (148 aa)%2C fasta scores%3B opt: 265 z-score: 348.7 E(): 4e-12%2C 32.9%25 identity in 140 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02637 GatB/Yqey identified within CDS. This domain is found in GatB and proteins related to bacterial Yqey. Typically about 140 aa residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism. Product modified to more specific family member due to motif match. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF02637;locus_tag=Cj0573;product=putative GatB/Yqey family protein;protein_id=CAL34719.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	534419	534841	.	+	.	ID=id-Cj0573;Note=HMMPfam hit to PF02637%2C GatB/Yqey domain%2C score 2.7e-29;gbkey=misc_feature;inference=protein motif:Pfam:PF02637;locus_tag=Cj0573
gi|15791399|ref|NC_002163.1|	EMBL	gene	534865	536565	.	+	.	ID=gene-Cj0574;Name=ilvI;gbkey=Gene;gene=ilvI;gene_biotype=protein_coding;locus_tag=Cj0574
gi|15791399|ref|NC_002163.1|	EMBL	CDS	534865	536565	.	+	0	ID=cds-CAL34720.1;Parent=gene-Cj0574;Dbxref=EnsemblGenomes-Gn:Cj0574,EnsemblGenomes-Tr:CAL34720,GOA:Q0PAU3,InterPro:IPR011766,InterPro:IPR012000,InterPro:IPR012001,InterPro:IPR012846,InterPro:IPR029035,InterPro:IPR029061,UniProtKB/TrEMBL:Q0PAU3,NCBI_GP:CAL34720.1;Name=CAL34720.1;Note=Original (2000) note: Cj0574%2C ilvI%2C probable acetolactate synthase large subunit%2C len: 566 aa%3B highly similar to many e.g.ILVI_ECOLI acetolactate synthase isozyme III large subunit (EC 4.1.3.18) (574 aa)%2C fasta scores%3B opt: 1713 z-score: 2101.4 E(): 0%2C 46.5%25 identity in 572 aa overlap (also 43.4%25 identity to ILVB_ECOLI%2C and 42.0%25 identity to ILVG_ECOLI). No Hp match. Contains Pfam match to entry PF00205 TPP_enzymes%2C Thiamine pyrophosphate enzymes%2C score 769.00%2C E-value 6.9e-238%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. EC number updated. Functional classification - Amino acid biosynthesis -Branched chain family%3B~PMID:6308579;gbkey=CDS;gene=ilvI;inference=protein motif:Pfam:PF00205;locus_tag=Cj0574;product=acetolactate synthase large subunit;protein_id=CAL34720.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	534874	535386	.	+	.	ID=id-Cj0574;Note=HMMPfam hit to PF02776%2C Thiamine pyrophosphate enzyme%2C N-termina%2C score 2.2e-89;gbkey=misc_feature;gene=ilvI;inference=protein motif:Pfam:PF02776;locus_tag=Cj0574
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	535441	535911	.	+	.	ID=id-Cj0574-2;Note=HMMPfam hit to PF00205%2C Thiamine pyrophosphate enzyme%2C central d%2C score 2.4e-62;gbkey=misc_feature;gene=ilvI;inference=protein motif:Pfam:PF00205;locus_tag=Cj0574
gi|15791399|ref|NC_002163.1|	EMBL	gene	536562	537026	.	+	.	ID=gene-Cj0575;Name=ilvH;gbkey=Gene;gene=ilvH;gene_biotype=protein_coding;locus_tag=Cj0575
gi|15791399|ref|NC_002163.1|	EMBL	CDS	536562	537026	.	+	0	ID=cds-CAL34721.1;Parent=gene-Cj0575;Dbxref=EnsemblGenomes-Gn:Cj0575,EnsemblGenomes-Tr:CAL34721,GOA:Q0PAU2,InterPro:IPR002912,InterPro:IPR004789,InterPro:IPR019455,UniProtKB/TrEMBL:Q0PAU2,NCBI_GP:CAL34721.1;Name=CAL34721.1;Note=Original (2000) note: Cj0575%2C ilvH%2C probable acetolactate synthase small subunit%2C len 145 aa%3B similar to many e.g. ILVH_ECOLI acetolactate synthase isozyme III small subunit (EC 4.1.3.18) (163 aa)%2C fasta scores%3B opt: 341 z-score: 523.3 E(): 7.5e-22%2C 40.0%25 identity in 155 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01842 ACT domain identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. EC number updated. Functional classification -Amino acid biosynthesis - Branched chain family%3B~PMID:6308579;gbkey=CDS;gene=ilvH;inference=protein motif:Pfam:PF01842;locus_tag=Cj0575;product=acetolactate synthase small subunit;protein_id=CAL34721.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	536568	536789	.	+	.	ID=id-Cj0575;Note=HMMPfam hit to PF01842%2C ACT domain%2C score 1.2e-13;gbkey=misc_feature;gene=ilvH;inference=protein motif:Pfam:PF01842;locus_tag=Cj0575
gi|15791399|ref|NC_002163.1|	EMBL	gene	537023	537988	.	+	.	ID=gene-Cj0576;Name=lpxD;gbkey=Gene;gene=lpxD;gene_biotype=protein_coding;locus_tag=Cj0576
gi|15791399|ref|NC_002163.1|	EMBL	CDS	537023	537988	.	+	0	ID=cds-CAL34722.1;Parent=gene-Cj0576;Dbxref=EnsemblGenomes-Gn:Cj0576,EnsemblGenomes-Tr:CAL34722,GOA:Q9PHU0,InterPro:IPR001451,InterPro:IPR007691,InterPro:IPR011004,InterPro:IPR018357,InterPro:IPR020573,NCBI_GP:CAL34722.1;Name=CAL34722.1;Note=Original (2000) note: Cj0576%2C lpxD%2C probable UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase%2C len: 321 aa%3B similar to many e.g. LPXD_RICRI UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) (345 aa)%2C fasta scores%3B opt: 673 z-score: 927.1 E(): 0%2C 41.1%25 identity in 314 aa overlap. 42.0%25 identity to HP0196. Contains PS00101 Hexapeptide-repeat containing-transferases signature and 3x Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%3B~Updated (2006) note: Pfam domain PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:8366125%2C PMID:8125326;gbkey=CDS;gene=lpxD;inference=protein motif:Prosite:PS00101;locus_tag=Cj0576;product=UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;protein_id=CAL34722.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	537023	537304	.	+	.	ID=id-Cj0576;Note=HMMPfam hit to PF04613%2CUDP-3-O-[3-hydroxymyristoyl] glucosamine N-a%2C score 1e-36;gbkey=misc_feature;gene=lpxD;inference=protein motif:Pfam:PF04613;locus_tag=Cj0576
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	537320	537373	.	+	.	ID=id-Cj0576-2;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 76;gbkey=misc_feature;gene=lpxD;inference=protein motif:Pfam:PF00132;locus_tag=Cj0576
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	537374	537427	.	+	.	ID=id-Cj0576-3;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 0.0021;gbkey=misc_feature;gene=lpxD;inference=protein motif:Pfam:PF00132;locus_tag=Cj0576
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	537383	537469	.	+	.	ID=id-Cj0576-4;Note=PS00101 Hexapeptide-repeat containing-transferases signature;gbkey=misc_feature;gene=lpxD;inference=protein motif:Prosite:PS00101;locus_tag=Cj0576
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	537428	537481	.	+	.	ID=id-Cj0576-5;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 0.0029;gbkey=misc_feature;gene=lpxD;inference=protein motif:Pfam:PF00132;locus_tag=Cj0576
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	537482	537535	.	+	.	ID=id-Cj0576-6;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 0.12;gbkey=misc_feature;gene=lpxD;inference=protein motif:Pfam:PF00132;locus_tag=Cj0576
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	537596	537649	.	+	.	ID=id-Cj0576-7;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 17;gbkey=misc_feature;gene=lpxD;inference=protein motif:Pfam:PF00132;locus_tag=Cj0576
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	537662	537715	.	+	.	ID=id-Cj0576-8;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 7.4;gbkey=misc_feature;gene=lpxD;inference=protein motif:Pfam:PF00132;locus_tag=Cj0576
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	537716	537769	.	+	.	ID=id-Cj0576-9;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 4;gbkey=misc_feature;gene=lpxD;inference=protein motif:Pfam:PF00132;locus_tag=Cj0576
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	537788	537841	.	+	.	ID=id-Cj0576-10;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 93;gbkey=misc_feature;gene=lpxD;inference=protein motif:Pfam:PF00132;locus_tag=Cj0576
gi|15791399|ref|NC_002163.1|	EMBL	gene	537977	539005	.	-	.	ID=gene-Cj0577c;Name=queA;gbkey=Gene;gene=queA;gene_biotype=protein_coding;locus_tag=Cj0577c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	537977	539005	.	-	0	ID=cds-CAL34723.1;Parent=gene-Cj0577c;Dbxref=EnsemblGenomes-Gn:Cj0577c,EnsemblGenomes-Tr:CAL34723,GOA:Q9PHT9,InterPro:IPR003699,NCBI_GP:CAL34723.1;Name=CAL34723.1;Note=Original (2000) note: Cj0577c%2C queA%2C probable S-adenosylmethionine:tRNA ribosyltransferase-isomerase%2Clen: 342 aa%3B highly similar to many e.g. QUEA_ECOLI S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) (356 aa)%2C fasta scores%3B opt: 580 z-score: 1196.1 E(): 0%2C 40.4%25 identity in 349 aa overlap. 51.9%25 identity to HP1062%3B~Updated (2006) note: Pfam domain PF02547 Queuosine biosynthesis protein identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:8347586;gbkey=CDS;gene=queA;inference=protein motif:Pfam:PF02547;locus_tag=Cj0577c;product=S-adenosylmethionine:tRNA ribosyltransferase-isomerase;protein_id=CAL34723.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	538331	538993	.	-	.	ID=id-Cj0577c;Note=HMMPfam hit to PF02547%2C Queuosine biosynthesis protein%2C score 1e-85;gbkey=misc_feature;gene=queA;inference=protein motif:Pfam:PF02547;locus_tag=Cj0577c
gi|15791399|ref|NC_002163.1|	EMBL	gene	538998	539735	.	-	.	ID=gene-Cj0578c;Name=tatC;gbkey=Gene;gene=tatC;gene_biotype=protein_coding;locus_tag=Cj0578c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	538998	539735	.	-	0	ID=cds-CAL34724.1;Parent=gene-Cj0578c;Dbxref=EnsemblGenomes-Gn:Cj0578c,EnsemblGenomes-Tr:CAL34724,GOA:Q9PHT8,InterPro:IPR002033,InterPro:IPR019820,NCBI_GP:CAL34724.1;Name=CAL34724.1;Note=Original (2000) note: Cj0578c%2C mttB%2C probable sec-independant protein translocase%2C len: 245 aa%3B similar to e.g. TR:G3193219 (EMBL:AF067848) E. coli MTTB (258 aa)%2Cfasta scores%3B opt: 523 z-score: 804.5 E(): 0%2C36.2%25 identity in 246 aa overlap. 49.6%25 identity to HP1061. Contains Pfam match to entry PF00902 UPF0032%2C Integral membrane protein of unknown function%3B~Updated (2006) note: Pfam domain PF00902 Sec-independent protein translocase protein identified within CDS. This motif was previously annotated as UPF0032 with unknown function. This family of proteins are involved in a sec-independent translocation mechanism. They are involved in export of redox proteins with a twin arginine leader motif (S/T-R-R-X-F-L-K). The sec-independent pathway is termed TAT for twin-arginine translocation system. Transport proteins with bound cofactors that require folding prior to export are mainly moved. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Gene name has also been updated from mttB to tatC. Functional classification - Protein and peptide secretion%3B~PMID:9649434%2C PMID:10652088%2C PMID:11781311;gbkey=CDS;gene=tatC;inference=protein motif:Pfam:PF00902;locus_tag=Cj0578c;product=sec-independant protein translocase;protein_id=CAL34724.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	539085	539153	.	-	.	ID=id-Cj0578c;Note=5 probable transmembrane helices predicted for Cj0578c by TMHMM2.0 at aa 16-38%2C 71-93%2C 105-127%2C 160-182 and 195-217;gbkey=misc_feature;gene=tatC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0578c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	539190	539258	.	-	.	ID=id-Cj0578c;Note=5 probable transmembrane helices predicted for Cj0578c by TMHMM2.0 at aa 16-38%2C 71-93%2C 105-127%2C 160-182 and 195-217;gbkey=misc_feature;gene=tatC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0578c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	539355	539423	.	-	.	ID=id-Cj0578c;Note=5 probable transmembrane helices predicted for Cj0578c by TMHMM2.0 at aa 16-38%2C 71-93%2C 105-127%2C 160-182 and 195-217;gbkey=misc_feature;gene=tatC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0578c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	539457	539525	.	-	.	ID=id-Cj0578c;Note=5 probable transmembrane helices predicted for Cj0578c by TMHMM2.0 at aa 16-38%2C 71-93%2C 105-127%2C 160-182 and 195-217;gbkey=misc_feature;gene=tatC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0578c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	539622	539690	.	-	.	ID=id-Cj0578c;Note=5 probable transmembrane helices predicted for Cj0578c by TMHMM2.0 at aa 16-38%2C 71-93%2C 105-127%2C 160-182 and 195-217;gbkey=misc_feature;gene=tatC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0578c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	539079	539696	.	-	.	ID=id-Cj0578c-2;Note=HMMPfam hit to PF00902%2C Sec-independent protein translocase protein%2C score 1.1e-85;gbkey=misc_feature;gene=tatC;inference=protein motif:Pfam:PF00902;locus_tag=Cj0578c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	539376	539408	.	-	.	ID=id-Cj0578c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=tatC;inference=protein motif:Prosite:PS00013;locus_tag=Cj0578c
gi|15791399|ref|NC_002163.1|	EMBL	gene	539728	540144	.	-	.	ID=gene-Cj0579c;Name=tatB;gbkey=Gene;gene=tatB;gene_biotype=protein_coding;locus_tag=Cj0579c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	539728	540144	.	-	0	ID=cds-CAL34725.1;Parent=gene-Cj0579c;Dbxref=EnsemblGenomes-Gn:Cj0579c,EnsemblGenomes-Tr:CAL34725,GOA:Q9PHT7,InterPro:IPR003369,InterPro:IPR018448,NCBI_GP:CAL34725.1;Name=CAL34725.1;Note=Original (2000) note: Cj0579c%2C unknown%2C len: 138 aa%3B 36.0%25 identity to HP1060%3B~Updated (2006) note: Pfam domain PF02416 mttA/Hcf106 family protein identified within CDS. This family of proteins are involved in a sec-independent translocation mechanism. This family of proteins are involved in export of redox proteins with a twin arginine leader motif (S/T-R-R-X-F-L-K) . The sec-independent pathway is termed TAT for twin-arginine translocation system. Transport proteins with bound cofactors that require folding prior to export are mainly moved. Product modified to more specific family member due to motif match. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Protein and peptide secretion%3B~PMID:9649434%2C PMID:10652088%2C PMID:10593889%2CPMID:11279240;gbkey=CDS;gene=tatB;inference=protein motif:Pfam:PF02416;locus_tag=Cj0579c;product=sec-independant protein translocase;protein_id=CAL34725.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	539959	540144	.	-	.	ID=id-Cj0579c;Note=HMMPfam hit to PF02416%2C mttA/Hcf106 family%2C score 8.2e-05;gbkey=misc_feature;gene=tatB;inference=protein motif:Pfam:PF02416;locus_tag=Cj0579c
gi|15791399|ref|NC_002163.1|	EMBL	gene	540202	541269	.	-	.	ID=gene-Cj0580c;Name=hemN;gbkey=Gene;gene=hemN;gene_biotype=protein_coding;locus_tag=Cj0580c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	540202	541269	.	-	0	ID=cds-CAL34726.1;Parent=gene-Cj0580c;Dbxref=EnsemblGenomes-Gn:Cj0580c,EnsemblGenomes-Tr:CAL34726,GOA:Q0PAT7,InterPro:IPR004559,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR023404,UniProtKB/TrEMBL:Q0PAT7,NCBI_GP:CAL34726.1;Name=CAL34726.1;Note=Original (2000) note: Cj0580c%2C probable oxidoreductase%2C len: 355 aa%3B similar to hypothetical proteins%2C e.g. YGGW_ECOLI (378 aa)%2C fasta scores%3B opt: 495 z-score: 501.9 E(): 1.2e-20 33.5%25 identity in 322 aa overlap%2C and to coproporphyrinogen III oxidases e.g. HEMN_ECOLI oxygen-independent coproporphyrinogen III oxidases (457 aa)%2C fasta scores%3B opt: 333 z-score: 432.8 E(): 8.2e-17%2C 26.5%25 identity in 302 aa overlap. 43.3%25 identity to HP1226. Also similar to C. jejuni hemN%2CCj0992c (25.1%25 identity in 382 aa overlap)%3B~Updated (2006) note: Pfam domain PF06969 HemN C-terminal region protein and PF04055 Radical SAM superfamily identified within CDS. Members of this family are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX. Product modified to more specific family member based on motif matches. No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification - Misc%3B~PMID:10498703;gbkey=CDS;gene=hemN;inference=protein motif:Pfam:PF06969;locus_tag=Cj0580c;product=putative oxygen-independent coproporphyrinogen III oxidase;protein_id=CAL34726.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	540253	540540	.	-	.	ID=id-Cj0580c;Note=HMMPfam hit to PF06969%2C HemN C-terminal region%2Cscore 4.5e-09;gbkey=misc_feature;gene=hemN;inference=protein motif:Pfam:PF06969;locus_tag=Cj0580c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	540757	541260	.	-	.	ID=id-Cj0580c-2;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 3.4e-23;gbkey=misc_feature;gene=hemN;inference=protein motif:Pfam:PF04055;locus_tag=Cj0580c
gi|15791399|ref|NC_002163.1|	EMBL	gene	541371	541841	.	+	.	ID=gene-Cj0581;Name=nudH;gbkey=Gene;gene=nudH;gene_biotype=protein_coding;locus_tag=Cj0581
gi|15791399|ref|NC_002163.1|	EMBL	CDS	541371	541841	.	+	0	ID=cds-CAL34727.1;Parent=gene-Cj0581;Dbxref=EnsemblGenomes-Gn:Cj0581,EnsemblGenomes-Tr:CAL34727,GOA:Q9PHT5,InterPro:IPR000086,InterPro:IPR015797,InterPro:IPR020084,InterPro:IPR020476,InterPro:IPR022927,NCBI_GP:CAL34727.1;Name=CAL34727.1;Note=Original (2000) note: Cj0581%2C possible NTPase%2C len: 156 aa%3B similar to several proteins containing mutT domains e.g. YGDP_ECOLI hypothetical 20.8 kd protein (176 aa)%2C fasta scores%3B opt: 335 z-score: 522.7 E(): 8e-22%2C39.0%25 identity in 154 aa overlap%2C and INVA_BARBA invasion associated protein A (170 aa)%2C fasta scores%3B opt: 301 z-score: 406.6 E(): 2.4e-15%2C 32.5%25 identity in 160 aa overlap. 55.3%25 identity to HP1228. Contains PS00893 mutT domain signature and Pfam match to entry PF00293 mutT%2CBacterial mutT protein%3B~Updated (2006) note: Pfam domain PF00293 mutT%2CBacterial mutT protein has now been changed to NUDIX domain. Product modified to more specific family member due to motif match. Characterised within Escherichia coli with acceptable identity score%2C however%2C sequence alignment was only partial. Putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:11479323;gbkey=CDS;gene=nudH;inference=protein motif:Prosite:PS00893;locus_tag=Cj0581;product=putative NUDIX hydrolase family protein;protein_id=CAL34727.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	541389	541817	.	+	.	ID=id-Cj0581;Note=HMMPfam hit to PF00293%2C NUDIX domain%2C score 4.9e-17;gbkey=misc_feature;gene=nudH;inference=protein motif:Pfam:PF00293;locus_tag=Cj0581
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	541497	541556	.	+	.	ID=id-Cj0581-2;Note=PS00893 mutT domain signature;gbkey=misc_feature;gene=nudH;inference=protein motif:Prosite:PS00893;locus_tag=Cj0581
gi|15791399|ref|NC_002163.1|	EMBL	gene	541843	543045	.	+	.	ID=gene-Cj0582;Name=lysC;gbkey=Gene;gene=lysC;gene_biotype=protein_coding;locus_tag=Cj0582
gi|15791399|ref|NC_002163.1|	EMBL	CDS	541843	543045	.	+	0	ID=cds-CAL34728.1;Parent=gene-Cj0582;Dbxref=EnsemblGenomes-Gn:Cj0582,EnsemblGenomes-Tr:CAL34728,GOA:Q0PAT5,InterPro:IPR001048,InterPro:IPR001341,InterPro:IPR002912,InterPro:IPR005260,InterPro:IPR018042,InterPro:IPR027795,UniProtKB/TrEMBL:Q0PAT5,NCBI_GP:CAL34728.1;Name=CAL34728.1;Note=Original (2000) note: Cj0582%2C lysC%2C probable aspartokinase%2C alpha and beta subunits%2C len: 400 aa%3B highly simlar to many e.g. AKAB_CORGL aspartokinase alpha and beta subunits (EC 2.7.2.4) (421 aa)%2C fasta scores%3B opt: 1228 z-score: 1715.1 E(): 0%2C 48.9%25 identity in 405 aa overlap. 63.0%25 identity to HP1229. Contains PS00324 Aspartokinase signature and Pfam match to entry PF00696 aakinase%2C Aspartate kinases%2C Glutamate kinases and Gamma glutamate phospho-reductases%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Aspartate family%3B~PMID:2837491;gbkey=CDS;gene=lysC;inference=protein motif:Prosite:PS00324;locus_tag=Cj0582;product=aspartokinase%2C alpha and beta subunits;protein_id=CAL34728.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	541843	542529	.	+	.	ID=id-Cj0582;Note=HMMPfam hit to PF00696%2C Amino acid kinase family%2Cscore 3.7e-77;gbkey=misc_feature;gene=lysC;inference=protein motif:Pfam:PF00696;locus_tag=Cj0582
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	541852	541878	.	+	.	ID=id-Cj0582-2;Note=PS00324 Aspartokinase signature;gbkey=misc_feature;gene=lysC;inference=protein motif:Prosite:PS00324;locus_tag=Cj0582
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	541876	541905	.	+	.	ID=id-Cj0582-3;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=lysC;inference=protein motif:Prosite:PS00339;locus_tag=Cj0582
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	542623	542835	.	+	.	ID=id-Cj0582-4;Note=HMMPfam hit to PF01842%2C ACT domain%2C score 7.1e-09;gbkey=misc_feature;gene=lysC;inference=protein motif:Pfam:PF01842;locus_tag=Cj0582
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	542857	543042	.	+	.	ID=id-Cj0582-5;Note=HMMPfam hit to PF01842%2C ACT domain%2C score 2.5e-08;gbkey=misc_feature;gene=lysC;inference=protein motif:Pfam:PF01842;locus_tag=Cj0582
gi|15791399|ref|NC_002163.1|	EMBL	gene	543046	543582	.	+	.	ID=gene-Cj0583;Name=Cj0583;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0583
gi|15791399|ref|NC_002163.1|	EMBL	CDS	543046	543582	.	+	0	ID=cds-CAL34729.1;Parent=gene-Cj0583;Dbxref=EnsemblGenomes-Gn:Cj0583,EnsemblGenomes-Tr:CAL34729,InterPro:IPR021011,UniProtKB/TrEMBL:Q0PAT4,NCBI_GP:CAL34729.1;Name=CAL34729.1;Note=Original (2000) note: Cj0583%2C unknown%2C len: 178 aa%3B 30.8%25 identity to HP1230. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0583;product=hypothetical protein Cj0583;protein_id=CAL34729.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	543588	544187	.	+	.	ID=gene-Cj0584;Name=Cj0584;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0584
gi|15791399|ref|NC_002163.1|	EMBL	CDS	543588	544187	.	+	0	ID=cds-CAL34730.1;Parent=gene-Cj0584;Dbxref=EnsemblGenomes-Gn:Cj0584,EnsemblGenomes-Tr:CAL34730,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAT3,NCBI_GP:CAL34730.1;Name=CAL34730.1;Note=Original (2000) note: Cj0584%2C unknown%2C len: 199 aa%3B 36.3%25 identity to HP1231 (annotated as DNA polymerase III delta prime subunit (holB)). No significant similarity to other holB proteins. Functional classification - Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0584;product=hypothetical protein Cj0584;protein_id=CAL34730.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	544189	545331	.	+	.	ID=gene-Cj0585;Name=folP;gbkey=Gene;gene=folP;gene_biotype=protein_coding;locus_tag=Cj0585
gi|15791399|ref|NC_002163.1|	EMBL	CDS	544189	545331	.	+	0	ID=cds-CAL34731.1;Parent=gene-Cj0585;Dbxref=EnsemblGenomes-Gn:Cj0585,EnsemblGenomes-Tr:CAL34731,GOA:Q0PAT2,InterPro:IPR000489,InterPro:IPR006390,InterPro:IPR011005,InterPro:IPR016227,UniProtKB/TrEMBL:Q0PAT2,NCBI_GP:CAL34731.1;Name=CAL34731.1;Note=Original (2000) note: Cj0585%2C folP%2C probable dihydropteroate synthase%2C len: 380 aa%3B simliar in C-terminus to e.g. DHPS_ECOLI dihydropteroate synthase (EC 2.5.1.15) (282 aa)%2C fasta scores%3B opt: 508 z-score: 504.3 E(): 8.5e-21%2C 35.8%25 identity in 274 aa overlap. 41.6%25 identity to HP1232. Contains Pfam match to entry PF00809 DHPS%2C Dihydropteroate synthase%3B~Updated (2006) note: Pfam domain PF00809 DHPS%2CDihydropteroate synthase has now been changed to Pterin binding enzyme. Characterised within Campylobacter jejuni and Escherichia coli with acceptable identity score. Putative removed from product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Folic acid%3B~PMID:10471557%2C PMID:8244950;gbkey=CDS;gene=folP;inference=protein motif:Pfam:PF00809;locus_tag=Cj0585;product=dihydropteroate synthase;protein_id=CAL34731.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	544555	545181	.	+	.	ID=id-Cj0585;Note=HMMPfam hit to PF00809%2C Pterin binding enzyme%2Cscore 1.2e-79;gbkey=misc_feature;gene=folP;inference=protein motif:Pfam:PF00809;locus_tag=Cj0585
gi|15791399|ref|NC_002163.1|	EMBL	gene	545332	547275	.	+	.	ID=gene-Cj0586;Name=ligA;gbkey=Gene;gene=ligA;gene_biotype=protein_coding;locus_tag=Cj0586
gi|15791399|ref|NC_002163.1|	EMBL	CDS	545332	547275	.	+	0	ID=cds-CAL34732.1;Parent=gene-Cj0586;Dbxref=EnsemblGenomes-Gn:Cj0586,EnsemblGenomes-Tr:CAL34732,GOA:Q0PAT1,InterPro:IPR001357,InterPro:IPR001679,InterPro:IPR003583,InterPro:IPR004150,InterPro:IPR010994,InterPro:IPR012340,InterPro:IPR013839,InterPro:IPR013840,InterPro:IPR018239,NCBI_GP:CAL34732.1;Name=CAL34732.1;Note=Original (2000) note: Cj0586%2C ligA%2C probable DNA ligase%2C len: 647 aa%3B similar to many e.g. DNLJ_ECOLI DNA ligase (EC 6.5.1.2) (671 aa)%2C fasta scores%3B opt: 1038 z-score: 1904.3 E(): 0%2C 40.7%25 identity in 654 aa overlap. 47.8%25 identity to HP0615. Contains PS01056 NAD-dependent DNA ligase signature 2 and Pfam match to entry PF00533 BRCT%2C BRCA1 C Terminus (BRCT) domain%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:3018436;gbkey=CDS;gene=ligA;inference=protein motif:Prosite:PS01056;locus_tag=Cj0586;product=DNA ligase;protein_id=CAL34732.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	545335	546246	.	+	.	ID=id-Cj0586;Note=HMMPfam hit to PF01653%2C NAD-dependent DNA ligase adenylation%2C score 3.7e-121;gbkey=misc_feature;gene=ligA;inference=protein motif:Pfam:PF01653;locus_tag=Cj0586
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	546250	546498	.	+	.	ID=id-Cj0586-2;Note=HMMPfam hit to PF03120%2C NAD-dependent DNA ligase OB-fold doma%2C score 3.9e-41;gbkey=misc_feature;gene=ligA;inference=protein motif:Pfam:PF03120;locus_tag=Cj0586
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	546283	546330	.	+	.	ID=id-Cj0586-3;Note=PS01056 NAD-dependent DNA ligase signature 2;gbkey=misc_feature;gene=ligA;inference=protein motif:Prosite:PS01056;locus_tag=Cj0586
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	547039	547266	.	+	.	ID=id-Cj0586-4;Note=HMMPfam hit to PF00533%2C BRCA1 C Terminus (BRCT) domain%2C score 1e-15;gbkey=misc_feature;gene=ligA;inference=protein motif:Pfam:PF00533;locus_tag=Cj0586
gi|15791399|ref|NC_002163.1|	EMBL	gene	547256	548260	.	+	.	ID=gene-Cj0587;Name=Cj0587;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0587
gi|15791399|ref|NC_002163.1|	EMBL	CDS	547256	548260	.	+	0	ID=cds-CAL34733.1;Parent=gene-Cj0587;Dbxref=EnsemblGenomes-Gn:Cj0587,EnsemblGenomes-Tr:CAL34733,UniProtKB/TrEMBL:Q0PAT0,NCBI_GP:CAL34733.1;Name=CAL34733.1;Note=Original (2000) note: Cj0587%2C probable integral membrane protein%2C len: 334 aa%3B no Hp match%3B~Updated (2006) note: Eight probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0587;product=putative integral membrane protein;protein_id=CAL34733.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	547274	547327	.	+	.	ID=id-Cj0587;Note=8 probable transmembrane helices predicted for Cj0587 by TMHMM2.0 at aa 7-24%2C 28-50%2C 74-96%2C 101-123%2C135-157%2C 182-204%2C 211-233 and 237-255;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0587;part=1/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	547337	547405	.	+	.	ID=id-Cj0587;Note=8 probable transmembrane helices predicted for Cj0587 by TMHMM2.0 at aa 7-24%2C 28-50%2C 74-96%2C 101-123%2C135-157%2C 182-204%2C 211-233 and 237-255;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0587;part=2/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	547475	547543	.	+	.	ID=id-Cj0587;Note=8 probable transmembrane helices predicted for Cj0587 by TMHMM2.0 at aa 7-24%2C 28-50%2C 74-96%2C 101-123%2C135-157%2C 182-204%2C 211-233 and 237-255;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0587;part=3/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	547556	547624	.	+	.	ID=id-Cj0587;Note=8 probable transmembrane helices predicted for Cj0587 by TMHMM2.0 at aa 7-24%2C 28-50%2C 74-96%2C 101-123%2C135-157%2C 182-204%2C 211-233 and 237-255;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0587;part=4/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	547658	547726	.	+	.	ID=id-Cj0587;Note=8 probable transmembrane helices predicted for Cj0587 by TMHMM2.0 at aa 7-24%2C 28-50%2C 74-96%2C 101-123%2C135-157%2C 182-204%2C 211-233 and 237-255;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0587;part=5/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	547799	547867	.	+	.	ID=id-Cj0587;Note=8 probable transmembrane helices predicted for Cj0587 by TMHMM2.0 at aa 7-24%2C 28-50%2C 74-96%2C 101-123%2C135-157%2C 182-204%2C 211-233 and 237-255;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0587;part=6/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	547886	547954	.	+	.	ID=id-Cj0587;Note=8 probable transmembrane helices predicted for Cj0587 by TMHMM2.0 at aa 7-24%2C 28-50%2C 74-96%2C 101-123%2C135-157%2C 182-204%2C 211-233 and 237-255;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0587;part=7/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	547964	548020	.	+	.	ID=id-Cj0587;Note=8 probable transmembrane helices predicted for Cj0587 by TMHMM2.0 at aa 7-24%2C 28-50%2C 74-96%2C 101-123%2C135-157%2C 182-204%2C 211-233 and 237-255;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0587;part=8/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	548257	549018	.	+	.	ID=gene-Cj0588;Name=tlyA;gbkey=Gene;gene=tlyA;gene_biotype=protein_coding;locus_tag=Cj0588
gi|15791399|ref|NC_002163.1|	EMBL	CDS	548257	549018	.	+	0	ID=cds-CAL34734.1;Parent=gene-Cj0588;Dbxref=EnsemblGenomes-Gn:Cj0588,EnsemblGenomes-Tr:CAL34734,GOA:Q0PAS9,InterPro:IPR002877,InterPro:IPR002942,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PAS9,NCBI_GP:CAL34734.1;Name=CAL34734.1;Note=Original (2000) note: Cj0588%2C tlyA%2C possible haemolysin%2C len: 253 aa%3B similar to e.g. HLYA_TREHY hemolysin A from Treponema hyodysenteriae (Serpulina hyodysenteriae) (240 aa)%2C fasta scores%3B opt: 342 z-score: 596.3 E(): 6.4e-26%2C 33.7%25 identity in 261 aa overlap. 40.7%25 identity to HP1086%3B~Updated (2006) note: Pfam domain PF01479 S4 and PF01728 FtsJ-like methyltransferase domain have been identified within CDS. Further support given to product function. Characterisation work carried out within Treponema hyodysenteriae with marginal identity score. Putative kept within product function. Functional classification - Pathogenicity%3B~PMID:1730486;gbkey=CDS;gene=tlyA;inference=protein motif:Pfam:PF01728;locus_tag=Cj0588;product=putative haemolysin;protein_id=CAL34734.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	548257	548394	.	+	.	ID=id-Cj0588;Note=HMMPfam hit to PF01479%2C S4 domain%2C score 0.013;gbkey=misc_feature;gene=tlyA;inference=protein motif:Pfam:PF01479;locus_tag=Cj0588
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	548473	549012	.	+	.	ID=id-Cj0588-2;Note=HMMPfam hit to PF01728%2C FtsJ-like methyltransferase%2C score 3e-06;gbkey=misc_feature;gene=tlyA;inference=protein motif:Pfam:PF01728;locus_tag=Cj0588
gi|15791399|ref|NC_002163.1|	EMBL	gene	548984	549838	.	+	.	ID=gene-Cj0589;Name=ribF;gbkey=Gene;gene=ribF;gene_biotype=protein_coding;locus_tag=Cj0589
gi|15791399|ref|NC_002163.1|	EMBL	CDS	548984	549838	.	+	0	ID=cds-CAL34735.1;Parent=gene-Cj0589;Dbxref=EnsemblGenomes-Gn:Cj0589,EnsemblGenomes-Tr:CAL34735,GOA:Q0PAS8,InterPro:IPR002606,InterPro:IPR014729,InterPro:IPR015864,InterPro:IPR015865,InterPro:IPR023465,InterPro:IPR023468,UniProtKB/TrEMBL:Q0PAS8,NCBI_GP:CAL34735.1;Name=CAL34735.1;Note=Original (2000) note: Cj0589%2C ribF%2C possible riboflavin kinase/FMN adenylyltransferase%2C len: 284 aa%3B simlar to e.g. RIBF_CORAM riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2) (338 aa)%2C fasta scores%3B opt: 227 z-score: 535.1 E(): 1.6e-22%2C 25.5%25 identity in 310 aa overlap. 43.5%25 identity to HP1087%3B~Updated (2006) note: Pfam domain PF06574 Riboflavin kinase (Flavokinase) and PF01687 Riboflavin kinase / FAD synthetase have been identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Riboflavin;gbkey=CDS;gene=ribF;inference=protein motif:Pfam:PF06574;locus_tag=Cj0589;product=putative riboflavin kinase/FMN adenylyltransferase;protein_id=CAL34735.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	549017	549403	.	+	.	ID=id-Cj0589;Note=HMMPfam hit to PF06574%2C Riboflavin kinase (Flavokinase)%2C score 1.5e-10;gbkey=misc_feature;gene=ribF;inference=protein motif:Pfam:PF06574;locus_tag=Cj0589
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	549449	549820	.	+	.	ID=id-Cj0589-2;Note=HMMPfam hit to PF01687%2C Riboflavin kinase / FAD synthetase%2C score 1.2e-24;gbkey=misc_feature;gene=ribF;inference=protein motif:Pfam:PF01687;locus_tag=Cj0589
gi|15791399|ref|NC_002163.1|	EMBL	gene	549825	550535	.	+	.	ID=gene-Cj0590;Name=Cj0590;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0590
gi|15791399|ref|NC_002163.1|	EMBL	CDS	549825	550535	.	+	0	ID=cds-CAL34736.1;Parent=gene-Cj0590;Dbxref=EnsemblGenomes-Gn:Cj0590,EnsemblGenomes-Tr:CAL34736,GOA:Q0PAS7,InterPro:IPR005271,InterPro:IPR025714,InterPro:IPR029063,NCBI_GP:CAL34736.1;Name=CAL34736.1;Note=Original (2000) note: Cj0590%2C unknown%2C len: 236 aa%3B similar to hypothetical proteins e.g. YECO_ECOLI (247 aa)%2Cfasta scores%3B opt: 476 z-score: 737.5 E(): 0%2C 35.6%25 identity in 239 aa overlap. 45.3%25 identity to HP0388%3B~Updated (2006) note: Prosite domain PS50193 SAM_BIND%2C SAM (and some other nucleotide) binding motif identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS50193;locus_tag=Cj0590;product=putative SAM-dependent methyltransferase;protein_id=CAL34736.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	550525	550746	.	-	.	ID=gene-Cj0591c;Name=Cj0591c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0591c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	550525	550746	.	-	0	ID=cds-CAL34737.1;Parent=gene-Cj0591c;Dbxref=EnsemblGenomes-Gn:Cj0591c,EnsemblGenomes-Tr:CAL34737,UniProtKB/TrEMBL:Q0PAS6,NCBI_GP:CAL34737.1;Name=CAL34737.1;Note=Original (2000) note: Cj0591c%2C probable lipoprotein%2C len: 73 aa%3B no Hp match. Contains N-terminal signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Some similarity to upstream gene Cj0592c (39.7%25 identity in 63 aa overlap). Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0591c;product=putative lipoprotein;protein_id=CAL34737.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	550690	550722	.	-	.	ID=id-Cj0591c;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0591c
gi|15791399|ref|NC_002163.1|	EMBL	gene	550743	551177	.	-	.	ID=gene-Cj0592c;Name=Cj0592c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0592c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	550743	551177	.	-	0	ID=cds-CAL34738.1;Parent=gene-Cj0592c;Dbxref=EnsemblGenomes-Gn:Cj0592c,EnsemblGenomes-Tr:CAL34738,UniProtKB/TrEMBL:Q0PAS5,NCBI_GP:CAL34738.1;Name=CAL34738.1;Note=Original (2000) note: Cj0592c%2C probable periplasmic protein%2C len: 144 aa%3B no Hp match. Contains N-terminal signal sequence. Some similarity to downstream gene Cj0591c (39.7%25 identity in 63 aa overlap). Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0592c;product=putative periplasmic protein;protein_id=CAL34738.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	551235	551867	.	-	.	ID=gene-Cj0593c;Name=Cj0593c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0593c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	551235	551867	.	-	0	ID=cds-CAL34739.1;Parent=gene-Cj0593c;Dbxref=EnsemblGenomes-Gn:Cj0593c,EnsemblGenomes-Tr:CAL34739,GOA:Q9PHS3,InterPro:IPR005115,NCBI_GP:CAL34739.1;Name=CAL34739.1;Note=Original (2000) note: Cj0593c%2C probable integral membrane protein%2C len: 210 aa%3B similar to hypothetical proteins e.g. YICG_ECOLI (205 aa)%2C fasta scores%3B opt: 783 z-score: 1285.7 E(): 0%2C 57.4%25 identity in 204 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains x2 PF03458 UPF0126 domain was identified within CDS. This domain is found duplicated in bacterial membrane proteins of unknown function and contains three transmembrane helices. Also seven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0593c;product=putative integral membrane protein;protein_id=CAL34739.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	551283	551342	.	-	.	ID=id-Cj0593c;Note=7 probable transmembrane helices predicted for Cj0593c by TMHMM2.0 at aa 5-27%2C 34-56%2C 69-87%2C 92-114%2C119-141%2C 153-172 and 176-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0593c;part=1/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	551352	551411	.	-	.	ID=id-Cj0593c;Note=7 probable transmembrane helices predicted for Cj0593c by TMHMM2.0 at aa 5-27%2C 34-56%2C 69-87%2C 92-114%2C119-141%2C 153-172 and 176-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0593c;part=2/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	551445	551513	.	-	.	ID=id-Cj0593c;Note=7 probable transmembrane helices predicted for Cj0593c by TMHMM2.0 at aa 5-27%2C 34-56%2C 69-87%2C 92-114%2C119-141%2C 153-172 and 176-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0593c;part=3/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	551526	551594	.	-	.	ID=id-Cj0593c;Note=7 probable transmembrane helices predicted for Cj0593c by TMHMM2.0 at aa 5-27%2C 34-56%2C 69-87%2C 92-114%2C119-141%2C 153-172 and 176-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0593c;part=4/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	551607	551663	.	-	.	ID=id-Cj0593c;Note=7 probable transmembrane helices predicted for Cj0593c by TMHMM2.0 at aa 5-27%2C 34-56%2C 69-87%2C 92-114%2C119-141%2C 153-172 and 176-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0593c;part=5/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	551700	551768	.	-	.	ID=id-Cj0593c;Note=7 probable transmembrane helices predicted for Cj0593c by TMHMM2.0 at aa 5-27%2C 34-56%2C 69-87%2C 92-114%2C119-141%2C 153-172 and 176-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0593c;part=6/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	551787	551855	.	-	.	ID=id-Cj0593c;Note=7 probable transmembrane helices predicted for Cj0593c by TMHMM2.0 at aa 5-27%2C 34-56%2C 69-87%2C 92-114%2C119-141%2C 153-172 and 176-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0593c;part=7/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	551334	551588	.	-	.	ID=id-Cj0593c-2;Note=HMMPfam hit to PF03458%2C UPF0126 domain%2C score 2.4e-34;gbkey=misc_feature;inference=protein motif:Pfam:PF03458;locus_tag=Cj0593c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	551589	551846	.	-	.	ID=id-Cj0593c-3;Note=HMMPfam hit to PF03458%2C UPF0126 domain%2C score 6.7e-38;gbkey=misc_feature;inference=protein motif:Pfam:PF03458;locus_tag=Cj0593c
gi|15791399|ref|NC_002163.1|	EMBL	gene	551878	552528	.	-	.	ID=gene-Cj0594c;Name=Cj0594c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0594c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	551878	552528	.	-	0	ID=cds-CAL34740.1;Parent=gene-Cj0594c;Dbxref=EnsemblGenomes-Gn:Cj0594c,EnsemblGenomes-Tr:CAL34740,GOA:Q0PAS3,InterPro:IPR001604,InterPro:IPR020821,UniProtKB/TrEMBL:Q0PAS3,NCBI_GP:CAL34740.1;Name=CAL34740.1;Note=Original (2000) note: Cj0594c%2C probable periplasmic protein%2C len: 216 aa%3B no Hp match. Contains N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF01223 DNA/RNA non-specific endonuclease was identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity score has been carried out yet. Thus%2C putative kept within product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Pfam:PF01223;locus_tag=Cj0594c;product=putative DNA/RNA non-specific endonuclease;protein_id=CAL34740.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	551881	552411	.	-	.	ID=id-Cj0594c;Note=HMMPfam hit to PF01223%2C DNA/RNA non-specific endonuclease%2C score 5.7e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF01223;locus_tag=Cj0594c
gi|15791399|ref|NC_002163.1|	EMBL	gene	552525	553151	.	-	.	ID=gene-Cj0595c;Name=nth;gbkey=Gene;gene=nth;gene_biotype=protein_coding;locus_tag=Cj0595c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	552525	553151	.	-	0	ID=cds-CAL34741.1;Parent=gene-Cj0595c;Dbxref=EnsemblGenomes-Gn:Cj0595c,EnsemblGenomes-Tr:CAL34741,GOA:Q0PAS2,InterPro:IPR003265,InterPro:IPR003651,InterPro:IPR004035,InterPro:IPR005759,InterPro:IPR011257,InterPro:IPR023170,UniProtKB/TrEMBL:Q0PAS2,NCBI_GP:CAL34741.1;Name=CAL34741.1;Note=Original (2000) note: Cj0595c%2C nth%2C probable endonuclease III%2C len 208 aa%3B similar to many e.g. END3_ECOLI endonuclease III (EC 4.2.99.18) (211 aa)%2C fasta scores%3B opt: 488 z-score: 749.2 E(): 0%2C 39.7%25 identity in 204 aa overlap. 57.4%25 identity to HP0585. Contains PS00764 Endonuclease III iron-sulfur binding region signature and Pfam match to entry PF00730 Endonuclease_3%2C Endonuclease III%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:2669955;gbkey=CDS;gene=nth;inference=protein motif:Prosite:PS00764;locus_tag=Cj0595c;product=endonuclease III;protein_id=CAL34741.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	552552	552602	.	-	.	ID=id-Cj0595c;Note=PS00764 Endonuclease III iron-sulfur binding region signature;gbkey=misc_feature;gene=nth;inference=protein motif:Prosite:PS00764;locus_tag=Cj0595c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	552651	553058	.	-	.	ID=id-Cj0595c-2;Note=HMMPfam hit to PF00730%2C HhH-GPD superfamily base excision DNA repair%2C score 9.8e-20;gbkey=misc_feature;gene=nth;inference=protein motif:Pfam:PF00730;locus_tag=Cj0595c
gi|15791399|ref|NC_002163.1|	EMBL	gene	553232	554053	.	+	.	ID=gene-Cj0596;Name=peb4-cbf2;gbkey=Gene;gene=peb4-cbf2;gene_biotype=protein_coding;locus_tag=Cj0596
gi|15791399|ref|NC_002163.1|	EMBL	CDS	553232	554053	.	+	0	ID=cds-CAL34742.1;Parent=gene-Cj0596;Dbxref=EnsemblGenomes-Gn:Cj0596,EnsemblGenomes-Tr:CAL34742,GOA:Q0PAS1,InterPro:IPR000297,InterPro:IPR023058,PDB:3RFW,NCBI_GP:CAL34742.1;Name=CAL34742.1;Note=Original (2000) note: Cj0596%2C peb4-cbf2%2C major antigenic peptide PEB4-cell binding factor 2%2C len: 273 aa%3B identical to CBF2_CAMJE cell binding factor 2 precursor%2Cand TR:G451285 peb4%3Dmajor antigenic peptide (34 aa). Also similar to memebers of the PPIC-parvulin family of rotamases e.g. PRTM_LACPA protease maturation protein precursor (299 aa)%2C fasta scores%3B opt: 238 z-score: 303.5 E(): 1.3e-09%2C 31.3%25 identity in 240 aa overlap%2C and CYPD_ECOLI peptidyl-prolyl cis-trans isomerase D (623 aa)%2Cfasta scores%3B opt: 244 z-score: 293.9 E(): 4.5e-09%2C 27.1%25 identity in 221 aa overlap. 35.7%25 identity to HP0175. Contains PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature and Pfam match to entry PF00639 Rotamase%2C PPIC-type PPIASE domain%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:8525063;gbkey=CDS;gene=peb4-cbf2;inference=protein motif:Prosite:PS01096;locus_tag=Cj0596;product=major antigenic peptide PEB-cell binding factor;protein_id=CAL34742.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	553244	553312	.	+	.	ID=id-Cj0596;Note=1 probable transmembrane helix predicted for Cj0596 by TMHMM2.0 at aa 5-27;gbkey=misc_feature;gene=peb4-cbf2;inference=protein motif:TMHMM:2.0;locus_tag=Cj0596
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	553643	553915	.	+	.	ID=id-Cj0596-2;Note=HMMPfam hit to PF00639%2C PPIC-type PPIASE domain%2Cscore 2.7e-30;gbkey=misc_feature;gene=peb4-cbf2;inference=protein motif:Pfam:PF00639;locus_tag=Cj0596
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	553727	553792	.	+	.	ID=id-Cj0596-3;Note=PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature;gbkey=misc_feature;gene=peb4-cbf2;inference=protein motif:Prosite:PS01096;locus_tag=Cj0596
gi|15791399|ref|NC_002163.1|	EMBL	gene	554053	555117	.	+	.	ID=gene-Cj0597;Name=fba;gbkey=Gene;gene=fba;gene_biotype=protein_coding;locus_tag=Cj0597
gi|15791399|ref|NC_002163.1|	EMBL	CDS	554053	555117	.	+	0	ID=cds-CAL34743.1;Parent=gene-Cj0597;Dbxref=EnsemblGenomes-Gn:Cj0597,EnsemblGenomes-Tr:CAL34743,GOA:Q0PAS0,InterPro:IPR000771,InterPro:IPR006411,InterPro:IPR013785,PDB:3QM3,NCBI_GP:CAL34743.1;Name=CAL34743.1;Note=Original (2000) note: Cj0597%2C fba%2Cfructose-bisphosphate aldolase%2C len: 354 aa%3B identical to ALF_CAMJE fructose-bisphosphate aldolase (EC 4.1.2.13) (354 aa)%2C and highly similar to many e.g. ALF_ECOLI (358 aa)%2C fasta scores%3B opt: 1557 z-score: 1802.7 E(): 0%2C 64.5%25 identity in 355 aa overlap. 28.0%25 identity to HP0176. Contains PS00602 and PS00806 Fructose-bisphosphate aldolase class-II signatures 1 and 2%2C and Pfam match to entry PF01116 F_bP_aldolase%2C Fructose-bisphosphate aldolase class-II%2C score 719.30%2C E-value 1.8e-212%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Functional classification - Energy metabolism - Glycolysis%3B~PMID:8525063;gbkey=CDS;gene=fba;inference=protein motif:Prosite:PS00806;locus_tag=Cj0597;product=fructose-bisphosphate aldolase;protein_id=CAL34743.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	554092	555114	.	+	.	ID=id-Cj0597;Note=HMMPfam hit to PF01116%2C Fructose-bisphosphate aldolase class-II%2C score 9.3e-215;gbkey=misc_feature;gene=fba;inference=protein motif:Pfam:PF01116;locus_tag=Cj0597
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	554335	554370	.	+	.	ID=id-Cj0597-2;Note=PS00602 Fructose-bisphosphate aldolase class-II signature 1;gbkey=misc_feature;gene=fba;inference=protein motif:Prosite:PS00602;locus_tag=Cj0597
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	554548	554583	.	+	.	ID=id-Cj0597-3;Note=PS00806 Fructose-bisphosphate aldolase class-II signature 2;gbkey=misc_feature;gene=fba;inference=protein motif:Prosite:PS00806;locus_tag=Cj0597
gi|15791399|ref|NC_002163.1|	EMBL	gene	555212	556654	.	+	.	ID=gene-Cj0598;Name=Cj0598;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0598
gi|15791399|ref|NC_002163.1|	EMBL	CDS	555212	556654	.	+	0	ID=cds-CAL34744.1;Parent=gene-Cj0598;Dbxref=EnsemblGenomes-Gn:Cj0598,EnsemblGenomes-Tr:CAL34744,GOA:Q0PAR9,InterPro:IPR002898,UniProtKB/TrEMBL:Q0PAR9,NCBI_GP:CAL34744.1;Name=CAL34744.1;Note=Original (2000) note: Cj0598%2C probable membrane protein%2C len: 480 aa%3B no Hp match%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0598;product=putative membrane protein;protein_id=CAL34744.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	555272	555340	.	+	.	ID=id-Cj0598;Note=4 probable transmembrane helices predicted for Cj0598 by TMHMM2.0 at aa 21-43%2C 53-70%2C 129-151 and 173-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0598;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	555368	555421	.	+	.	ID=id-Cj0598;Note=4 probable transmembrane helices predicted for Cj0598 by TMHMM2.0 at aa 21-43%2C 53-70%2C 129-151 and 173-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0598;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	555596	555664	.	+	.	ID=id-Cj0598;Note=4 probable transmembrane helices predicted for Cj0598 by TMHMM2.0 at aa 21-43%2C 53-70%2C 129-151 and 173-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0598;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	555728	555796	.	+	.	ID=id-Cj0598;Note=4 probable transmembrane helices predicted for Cj0598 by TMHMM2.0 at aa 21-43%2C 53-70%2C 129-151 and 173-195;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0598;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	556651	557604	.	+	.	ID=gene-Cj0599;Name=Cj0599;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0599
gi|15791399|ref|NC_002163.1|	EMBL	CDS	556651	557604	.	+	0	ID=cds-CAL34745.1;Parent=gene-Cj0599;Dbxref=EnsemblGenomes-Gn:Cj0599,EnsemblGenomes-Tr:CAL34745,GOA:Q0PAR8,InterPro:IPR006665,UniProtKB/TrEMBL:Q0PAR8,NCBI_GP:CAL34745.1;Name=CAL34745.1;Note=Original (2000) note: Cj0599%2C probable periplasmic protein%2C len: 317 aa%3B no Hp match. Contains N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF00691 OmpA family protein was identified within CDS. Also%2C one probable transmembrane helix predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity scores has been carried out yet. Putative kept within product function. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0599;product=putative OmpA family membrane protein;protein_id=CAL34745.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	556687	556755	.	+	.	ID=id-Cj0599;Note=1 probable transmembrane helix predicted for Cj0599 by TMHMM2.0 at aa 13-35;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0599
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	557209	557532	.	+	.	ID=id-Cj0599-2;Note=HMMPfam hit to PF00691%2C OmpA family%2C score 2.1e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF00691;locus_tag=Cj0599
gi|15791399|ref|NC_002163.1|	EMBL	gene	557591	558466	.	+	.	ID=gene-Cj0600;Name=Cj0600;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0600
gi|15791399|ref|NC_002163.1|	EMBL	CDS	557591	558466	.	+	0	ID=cds-CAL34746.1;Parent=gene-Cj0600;Dbxref=EnsemblGenomes-Gn:Cj0600,EnsemblGenomes-Tr:CAL34746,InterPro:IPR001926,UniProtKB/TrEMBL:Q0PAR7,NCBI_GP:CAL34746.1;Name=CAL34746.1;Note=Original (2000) note: Cj0600%2C unknown%2C len: 291 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0600;product=hypothetical protein Cj0600;protein_id=CAL34746.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	558458	559801	.	-	.	ID=gene-Cj0601c;Name=Cj0601c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0601c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	558458	559801	.	-	0	ID=cds-CAL34747.1;Parent=gene-Cj0601c;Dbxref=EnsemblGenomes-Gn:Cj0601c,EnsemblGenomes-Tr:CAL34747,GOA:Q0PAR6,InterPro:IPR000175,UniProtKB/TrEMBL:Q0PAR6,NCBI_GP:CAL34747.1;Name=CAL34747.1;Note=Original (2000) note: Cj0601c%2C probable sodium-dependent transmembrane transport protein%2C len: 447 aa%3B similar to members of the sodium:neurotransmitter symporter family e.g. YG90_HAEIN hypothetical sodium-dependent transporter HI1690 (457 aa)%2C fasta scores%3B opt: 1380 z-score: 2645.2 E(): 0%2C 61.0%25 identity in 456 aa overlap%2C and NTSE_RAT sodium-dependent serotonin transporter (630 aa)%2C fasta scores%3B opt: 265 z-score: 744.2 E(): 0. 25.8%25 identity in 488 aa overlap. No Hp ortholog. Also similar to Cj0935c (32.4%25 identity in 451 aa overlap)%2C and Cj0934c (28.0%25 identity in 454 aa overlap). Contains PS00610 Sodium:neurotransmitter symporter family signature 1 and Pfam match to entry PF00209 SNF%2C Sodium:neurotransmitter symporter family%3B~Updated (2006) note: Eleven probable transmembrane helices predicted by TMHMM2.0. No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;product=putative sodium-dependent transmembrane transport protein;protein_id=CAL34747.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	558464	558532	.	-	.	ID=id-Cj0601c;Note=11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27%2C 37-59%2C 87-109%2C 135-157%2C168-190%2C 217-239%2C 252-274%2C 296-318%2C 339-361%2C 381-403 and 424-446;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;part=1/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	558593	558661	.	-	.	ID=id-Cj0601c;Note=11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27%2C 37-59%2C 87-109%2C 135-157%2C168-190%2C 217-239%2C 252-274%2C 296-318%2C 339-361%2C 381-403 and 424-446;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;part=2/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	558719	558787	.	-	.	ID=id-Cj0601c;Note=11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27%2C 37-59%2C 87-109%2C 135-157%2C168-190%2C 217-239%2C 252-274%2C 296-318%2C 339-361%2C 381-403 and 424-446;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;part=3/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	558848	558916	.	-	.	ID=id-Cj0601c;Note=11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27%2C 37-59%2C 87-109%2C 135-157%2C168-190%2C 217-239%2C 252-274%2C 296-318%2C 339-361%2C 381-403 and 424-446;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;part=4/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	558980	559048	.	-	.	ID=id-Cj0601c;Note=11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27%2C 37-59%2C 87-109%2C 135-157%2C168-190%2C 217-239%2C 252-274%2C 296-318%2C 339-361%2C 381-403 and 424-446;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;part=5/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	559085	559153	.	-	.	ID=id-Cj0601c;Note=11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27%2C 37-59%2C 87-109%2C 135-157%2C168-190%2C 217-239%2C 252-274%2C 296-318%2C 339-361%2C 381-403 and 424-446;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;part=6/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	559232	559300	.	-	.	ID=id-Cj0601c;Note=11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27%2C 37-59%2C 87-109%2C 135-157%2C168-190%2C 217-239%2C 252-274%2C 296-318%2C 339-361%2C 381-403 and 424-446;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;part=7/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	559331	559399	.	-	.	ID=id-Cj0601c;Note=11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27%2C 37-59%2C 87-109%2C 135-157%2C168-190%2C 217-239%2C 252-274%2C 296-318%2C 339-361%2C 381-403 and 424-446;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;part=8/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	559475	559543	.	-	.	ID=id-Cj0601c;Note=11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27%2C 37-59%2C 87-109%2C 135-157%2C168-190%2C 217-239%2C 252-274%2C 296-318%2C 339-361%2C 381-403 and 424-446;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;part=9/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	559625	559693	.	-	.	ID=id-Cj0601c;Note=11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27%2C 37-59%2C 87-109%2C 135-157%2C168-190%2C 217-239%2C 252-274%2C 296-318%2C 339-361%2C 381-403 and 424-446;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;part=10/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	559721	559789	.	-	.	ID=id-Cj0601c;Note=11 probable transmembrane helices predicted for Cj0601c by TMHMM2.0 at aa 5-27%2C 37-59%2C 87-109%2C 135-157%2C168-190%2C 217-239%2C 252-274%2C 296-318%2C 339-361%2C 381-403 and 424-446;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0601c;part=11/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	558533	559795	.	-	.	ID=id-Cj0601c-2;Note=HMMPfam hit to PF00209%2C Sodium:neurotransmitter symporter family%2C score 1.2e-14;gbkey=misc_feature;inference=protein motif:Pfam:PF00209;locus_tag=Cj0601c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	559679	559723	.	-	.	ID=id-Cj0601c-3;Note=PS00610 Sodium:neurotransmitter symporter family signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00610;locus_tag=Cj0601c
gi|15791399|ref|NC_002163.1|	EMBL	gene	559852	560520	.	-	.	ID=gene-Cj0602c;Name=Cj0602c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0602c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	559852	560520	.	-	0	ID=cds-CAL34748.1;Parent=gene-Cj0602c;Dbxref=EnsemblGenomes-Gn:Cj0602c,EnsemblGenomes-Tr:CAL34748,GOA:Q0PAR5,InterPro:IPR005302,InterPro:IPR011037,InterPro:IPR015808,UniProtKB/TrEMBL:Q0PAR5,NCBI_GP:CAL34748.1;Name=CAL34748.1;Note=Original (2000) note: Cj0602c%2C unknown%2C len: 222 aa%3B similar to hypothetical proteins e.g. YIIM_ECOLI (234 aa)%2C fasta scores%3B opt: 298 z-score: 406.4 E(): 2.4e-15%2C30.4%25 identity in 207 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF03475 3-alpha domain and PF03473 MOSC domain were identified within CDS. Product modified to more specific family member due to motif match. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF03475;locus_tag=Cj0602c;product=MOSC-domain containing protein;protein_id=CAL34748.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	559876	560031	.	-	.	ID=id-Cj0602c;Note=HMMPfam hit to PF03475%2C 3-alpha domain%2C score 2.7e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF03475;locus_tag=Cj0602c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	560050	560418	.	-	.	ID=id-Cj0602c-2;Note=HMMPfam hit to PF03473%2C MOSC domain%2C score 2.2e-44;gbkey=misc_feature;inference=protein motif:Pfam:PF03473;locus_tag=Cj0602c
gi|15791399|ref|NC_002163.1|	EMBL	gene	560517	562220	.	-	.	ID=gene-Cj0603c;Name=dsbD;gbkey=Gene;gene=dsbD;gene_biotype=protein_coding;locus_tag=Cj0603c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	560517	562220	.	-	0	ID=cds-CAL34749.1;Parent=gene-Cj0603c;Dbxref=EnsemblGenomes-Gn:Cj0603c,EnsemblGenomes-Tr:CAL34749,GOA:Q9PHR3,InterPro:IPR003834,InterPro:IPR012336,InterPro:IPR022910,InterPro:IPR028250,NCBI_GP:CAL34749.1;Name=CAL34749.1;Note=Original (2000) note: Cj0603c%2C dsbD%2C possible thiol:disulfide interchange protein%2C len: 567 aa%3B similar to e.g. DSBD_ECOLI thiol:disulfide interchange protein DSBD (488 aa)%2C fasta scores%3B opt: 795 z-score: 977.8 E(): 0%2C 31.5%25 identity in 496 aa overlap. 27.1%25 identity to HP0265%3B~Updated (2006) note: Pfam domain PF02683 Cytochrome C biogenesis protein transmembrane was identified within CDS. Also%2C Prosite domain PS50223 THIOREDOXIN_2%2CThioredoxin domain 2 identified along with eight probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. DsbA and DsbC periplasmic proteins are involved in disulphide bond formation. DsbD generates a reducing source in the periplasm%2C which is required for maintaining proper redox conditions. Characterised within Escherichia coli with marginal identity score. Putative kept within product function. Functional classification - Protein translation and modification%3B~PMID:7628442%2C PMID:11085993;gbkey=CDS;gene=dsbD;inference=protein motif:TMHMM:2.0;locus_tag=Cj0603c;product=putative thiol:disulphide interchange protein;protein_id=CAL34749.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	560910	560969	.	-	.	ID=id-Cj0603c;Note=8 probable transmembrane helices predicted for Cj0603c by TMHMM2.0 at aa 177-199%2C 211-233%2C 248-270%2C290-321%2C 331-353%2C 365-382%2C 386-405 and 418-437;gbkey=misc_feature;gene=dsbD;inference=protein motif:TMHMM:2.0;locus_tag=Cj0603c;part=1/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	561006	561065	.	-	.	ID=id-Cj0603c;Note=8 probable transmembrane helices predicted for Cj0603c by TMHMM2.0 at aa 177-199%2C 211-233%2C 248-270%2C290-321%2C 331-353%2C 365-382%2C 386-405 and 418-437;gbkey=misc_feature;gene=dsbD;inference=protein motif:TMHMM:2.0;locus_tag=Cj0603c;part=2/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	561075	561128	.	-	.	ID=id-Cj0603c;Note=8 probable transmembrane helices predicted for Cj0603c by TMHMM2.0 at aa 177-199%2C 211-233%2C 248-270%2C290-321%2C 331-353%2C 365-382%2C 386-405 and 418-437;gbkey=misc_feature;gene=dsbD;inference=protein motif:TMHMM:2.0;locus_tag=Cj0603c;part=3/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	561162	561230	.	-	.	ID=id-Cj0603c;Note=8 probable transmembrane helices predicted for Cj0603c by TMHMM2.0 at aa 177-199%2C 211-233%2C 248-270%2C290-321%2C 331-353%2C 365-382%2C 386-405 and 418-437;gbkey=misc_feature;gene=dsbD;inference=protein motif:TMHMM:2.0;locus_tag=Cj0603c;part=4/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	561258	561353	.	-	.	ID=id-Cj0603c;Note=8 probable transmembrane helices predicted for Cj0603c by TMHMM2.0 at aa 177-199%2C 211-233%2C 248-270%2C290-321%2C 331-353%2C 365-382%2C 386-405 and 418-437;gbkey=misc_feature;gene=dsbD;inference=protein motif:TMHMM:2.0;locus_tag=Cj0603c;part=5/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	561411	561479	.	-	.	ID=id-Cj0603c;Note=8 probable transmembrane helices predicted for Cj0603c by TMHMM2.0 at aa 177-199%2C 211-233%2C 248-270%2C290-321%2C 331-353%2C 365-382%2C 386-405 and 418-437;gbkey=misc_feature;gene=dsbD;inference=protein motif:TMHMM:2.0;locus_tag=Cj0603c;part=6/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	561522	561590	.	-	.	ID=id-Cj0603c;Note=8 probable transmembrane helices predicted for Cj0603c by TMHMM2.0 at aa 177-199%2C 211-233%2C 248-270%2C290-321%2C 331-353%2C 365-382%2C 386-405 and 418-437;gbkey=misc_feature;gene=dsbD;inference=protein motif:TMHMM:2.0;locus_tag=Cj0603c;part=7/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	561624	561692	.	-	.	ID=id-Cj0603c;Note=8 probable transmembrane helices predicted for Cj0603c by TMHMM2.0 at aa 177-199%2C 211-233%2C 248-270%2C290-321%2C 331-353%2C 365-382%2C 386-405 and 418-437;gbkey=misc_feature;gene=dsbD;inference=protein motif:TMHMM:2.0;locus_tag=Cj0603c;part=8/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	561084	561701	.	-	.	ID=id-Cj0603c-2;Note=HMMPfam hit to PF02683%2C Cytochrome C biogenesis protein transmembran%2C score 1.2e-07;gbkey=misc_feature;gene=dsbD;inference=protein motif:Pfam:PF02683;locus_tag=Cj0603c
gi|15791399|ref|NC_002163.1|	EMBL	gene	562315	563196	.	+	.	ID=gene-Cj0604;Name=Cj0604;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0604
gi|15791399|ref|NC_002163.1|	EMBL	CDS	562315	563196	.	+	0	ID=cds-CAL34750.1;Parent=gene-Cj0604;Dbxref=EnsemblGenomes-Gn:Cj0604,EnsemblGenomes-Tr:CAL34750,GOA:Q0PAR3,InterPro:IPR016898,InterPro:IPR022486,InterPro:IPR022488,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAR3,NCBI_GP:CAL34750.1;Name=CAL34750.1;Note=Original (2000) note: Cj0604%2C unknown%2C len: 293 aa%3B similar to hypothetical proteins e.g. TR:O05877 (EMBL:O05877) Mycobacterium tuberculosis Rv3232c (MTCY20B11.07c) (295 aa)%2C fasta scores%3B opt: 858 z-score: 1317.7 E(): 0%2C 52.0%25 identity in 227 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03976 Domain of unknown function (DUF344) was identified within CDS This Pfam has now been modified to Polyphosphate kinase 2. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Misc%3B~PMID:12486232;gbkey=CDS;inference=protein motif:Pfam:PF03976;locus_tag=Cj0604;product=putative polyphosphate kinase;protein_id=CAL34750.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	562387	563073	.	+	.	ID=id-Cj0604;Note=HMMPfam hit to PF03976%2C Domain of unknown function (DUF344)%2C score 3.4e-171;gbkey=misc_feature;inference=protein motif:Pfam:PF03976;locus_tag=Cj0604
gi|15791399|ref|NC_002163.1|	EMBL	gene	563205	564395	.	+	.	ID=gene-Cj0605;Name=Cj0605;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0605
gi|15791399|ref|NC_002163.1|	EMBL	CDS	563205	564395	.	+	0	ID=cds-CAL34751.1;Parent=gene-Cj0605;Dbxref=EnsemblGenomes-Gn:Cj0605,EnsemblGenomes-Tr:CAL34751,GOA:Q0PAR2,InterPro:IPR002933,InterPro:IPR011650,InterPro:IPR017439,UniProtKB/TrEMBL:Q0PAR2,NCBI_GP:CAL34751.1;Name=CAL34751.1;Note=Original (2000) note: Cj0605%2C probable amidohydrolase%2C len: 396 aa%3B similar to members of the AMA/HIPO/HYUC family of hydrolases (peptidase family M40) e.g. AMAA_BACST N-acyl-L-amino acid amidohydrolase (370 aa)%2C fasta scores%3B opt: 805 z-score: 1165.8 E(): 0%2C 41.4%25 identity in 307 aa overlap. Also similar to HIPO_CAMJE hippurate hydrolase (Cj0985c) (383 aa) (39.1%25 identity in 376 aa overlap). No Hp match. Contains PS00070 Aldehyde dehydrogenases cysteine active site%3B~Updated (2006) note: Pfam domain PF01546 Peptidase family M20/M25/M40 was identified within CDS. Further support given to product function. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS00070;locus_tag=Cj0605;product=putative amidohydrolase;protein_id=CAL34751.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	563436	564380	.	+	.	ID=id-Cj0605;Note=HMMPfam hit to PF01546%2C Peptidase family M20/M25/M40%2C score 1e-43;gbkey=misc_feature;inference=protein motif:Pfam:PF01546;locus_tag=Cj0605
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	563919	563954	.	+	.	ID=id-Cj0605-2;Note=PS00070 Aldehyde dehydrogenases cysteine active site;gbkey=misc_feature;inference=protein motif:Prosite:PS00070;locus_tag=Cj0605
gi|15791399|ref|NC_002163.1|	EMBL	gene	564474	565646	.	+	.	ID=gene-Cj0606;Name=Cj0606;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0606
gi|15791399|ref|NC_002163.1|	EMBL	CDS	564474	565646	.	+	0	ID=cds-CAL34752.1;Parent=gene-Cj0606;Dbxref=EnsemblGenomes-Gn:Cj0606,EnsemblGenomes-Tr:CAL34752,GOA:Q0PAR1,InterPro:IPR006143,UniProtKB/TrEMBL:Q0PAR1,NCBI_GP:CAL34752.1;Name=CAL34752.1;Note=Original (2000) note: Cj0606%2C probable periplasmic protein%2C len: 390 aa%3B similar to hypothetical proteins e.g. E. coli TR:P75830 (EMBL:AE000189) (380 aa)%2C fasta scores%3B opt: 522 z-score: 648.1 E(): 8.4e-29%2C 31.3%25 identity in 386 aa overlap. No Hp ortholog. Contains probable N-terminal signal sequence and poly-Serine tract from aa 211 to 225%3B~Updated (2006) note: Pfam domain PF00529 HlyD family secretion protein was identified within CDS. Literature search identified paper linking the putative three-gene operon Cj0606-0608) to a putative type-one secretion system. Each of the three CDSs show characteristics similar to the alpha-haemolysin secretion system of Escherichia coli (PMID:8137117). Product modified to more specific family member due to motif match. Some characterisation work carried out within Escherichia coli (marginal identity score) and designated as macrolide-specific ABC-type efflux transporter. Putative kept within product function. Functional classification - Protein and peptide secretion%3B~PMID:15554967%2C PMID:8137117%2C PMID:11544226;gbkey=CDS;inference=protein motif:Pfam:PF00529;locus_tag=Cj0606;product=putative secretion protein HlyD;protein_id=CAL34752.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	564486	564545	.	+	.	ID=id-Cj0606;Note=1 probable transmembrane helix predicted for Cj0606 by TMHMM2.0 at aa 5-24;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0606
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	564639	565418	.	+	.	ID=id-Cj0606-2;Note=HMMPfam hit to PF00529%2C HlyD family secretion protein%2C score 0.00033;gbkey=misc_feature;inference=protein motif:Pfam:PF00529;locus_tag=Cj0606
gi|15791399|ref|NC_002163.1|	EMBL	gene	565646	567571	.	+	.	ID=gene-Cj0607;Name=Cj0607;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0607
gi|15791399|ref|NC_002163.1|	EMBL	CDS	565646	567571	.	+	0	ID=cds-CAL34753.1;Parent=gene-Cj0607;Dbxref=EnsemblGenomes-Gn:Cj0607,EnsemblGenomes-Tr:CAL34753,GOA:Q0PAR0,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR003838,InterPro:IPR017871,InterPro:IPR017911,InterPro:IPR025857,InterPro:IPR027417,NCBI_GP:CAL34753.1;Name=CAL34753.1;Note=Original (2000) note: Cj0607%2C probable ABC-type transmembrane transport protein%2C len: 641 aa%3B similar to many predicted ABC transporters e.g. YBJZ_ECOLI (648 aa)%2Cfasta scores%3B opt: 1729 z-score: 1619.1 E(): 0%2C 44.3%25 identity in 632 aa overlap. No Hp ortholog. Contains 2x PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C Pfam match to entry PF00005 ABC_tran%2C ABC transporters%2C and two possible membrane-spanning regions%3B~Updated (2006) note: Literature search identified paper linking the three-gene operon (Cj0606-0608) to a putative type-one secretion system. Each of the three CDSs show characteristics similar to the alpha-haemolysin secretion system of E.coli (PMID:8137117). Some characterisation work carried out within Escherichia coli (marginal identity score) and designated as macrolide-specific ABC-type efflux transporter. Putative not added to product function. Functional classification -Transport/binding proteins - Other%3B~PMID:15554967%2C PMID:8137117%2C PMID:11544226;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj0607;product=ABC-type transmembrane transport protein;protein_id=CAL34753.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	565724	566281	.	+	.	ID=id-Cj0607;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 3.9e-54;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj0607
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	565745	565768	.	+	.	ID=id-Cj0607-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0607
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	566057	566101	.	+	.	ID=id-Cj0607-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj0607
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	566438	566506	.	+	.	ID=id-Cj0607-4;Note=4 probable transmembrane helices predicted for Cj0607 by TMHMM2.0 at aa 265-287%2C 516-538%2C 567-589 and 602-624;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0607;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	567191	567259	.	+	.	ID=id-Cj0607-4;Note=4 probable transmembrane helices predicted for Cj0607 by TMHMM2.0 at aa 265-287%2C 516-538%2C 567-589 and 602-624;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0607;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	567344	567412	.	+	.	ID=id-Cj0607-4;Note=4 probable transmembrane helices predicted for Cj0607 by TMHMM2.0 at aa 265-287%2C 516-538%2C 567-589 and 602-624;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0607;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	567449	567517	.	+	.	ID=id-Cj0607-4;Note=4 probable transmembrane helices predicted for Cj0607 by TMHMM2.0 at aa 265-287%2C 516-538%2C 567-589 and 602-624;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0607;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	566582	566605	.	+	.	ID=id-Cj0607-5;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0607
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	567029	567547	.	+	.	ID=id-Cj0607-6;Note=HMMPfam hit to PF02687%2C Predicted permease%2C score 2.4e-46;gbkey=misc_feature;inference=protein motif:Pfam:PF02687;locus_tag=Cj0607
gi|15791399|ref|NC_002163.1|	EMBL	gene	567573	568943	.	+	.	ID=gene-Cj0608;Name=Cj0608;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0608
gi|15791399|ref|NC_002163.1|	EMBL	CDS	567573	568943	.	+	0	ID=cds-CAL34754.1;Parent=gene-Cj0608;Dbxref=EnsemblGenomes-Gn:Cj0608,EnsemblGenomes-Tr:CAL34754,GOA:Q0PAQ9,InterPro:IPR003423,UniProtKB/TrEMBL:Q0PAQ9,NCBI_GP:CAL34754.1;Name=CAL34754.1;Note=Original (2000) note: Cj0608%2C possible outer membrane protein%2C len: 456 aa%3B similar to hypothetical proteins e.g. YE62_HAEIN HI1462 (454 aa)%2C fasta scores%3B opt: 711 z-score: 933.7 E(): 0%2C 29.8%25 identity in 450 aa overlap%2C and weakly to outer membrene proteins e.g. TR:Q51006 (EMBL:X95635) Neisseria gonorrhoeae MTRE gene (fragment) (467 aa)%2C fasta scores%3B opt: 289 z-score: 325.5 E(): 8.3e-11%2C 22.8%25 identity in 465 aa overlap. No Hp match. Also similar to Cj0365c (28.6%25 identity in 455 aa overlap). Contains N-terminal signal sequence%2C PS00013 Prokaryotic membrane lipoprotein lipid attachment site and PS00217 Sugar transport proteins signature 2%3B~Updated (2006) note: Pfam domain PF02321 Outer membrane efflux protein was identified within CDS. Product modified to more specific family member due to motif match. Literature search identified paper linking the three-gene operon (Cj0606-0608) to a putative type-one secretion system. Each of the three CDSs show characteristics similar to the alpha-haemolysin secretion system of E.coli (PMID:8137117). Putative kept within product function. Functional classification -Transport/binding proteins - Other%3B~PMID:15554967%2C PMID:8137117%2C PMID:11544226;gbkey=CDS;inference=protein motif:Prosite:PS00217;locus_tag=Cj0608;product=putative outer membrane efflux protein;protein_id=CAL34754.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	567588	567620	.	+	.	ID=id-Cj0608;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0608
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	567723	568274	.	+	.	ID=id-Cj0608-2;Note=HMMPfam hit to PF02321%2C Outer membrane efflux protein%2C score 1.2e-12;gbkey=misc_feature;inference=protein motif:Pfam:PF02321;locus_tag=Cj0608
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	568359	568901	.	+	.	ID=id-Cj0608-3;Note=HMMPfam hit to PF02321%2C Outer membrane efflux protein%2C score 7.5e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF02321;locus_tag=Cj0608
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	568470	568547	.	+	.	ID=id-Cj0608-4;Note=PS00217 Sugar transport proteins signature 2;gbkey=misc_feature;inference=protein motif:Prosite:PS00217;locus_tag=Cj0608
gi|15791399|ref|NC_002163.1|	EMBL	gene	568946	570124	.	-	.	ID=gene-Cj0609c;Name=Cj0609c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0609c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	568946	570124	.	-	0	ID=cds-CAL34755.1;Parent=gene-Cj0609c;Dbxref=EnsemblGenomes-Gn:Cj0609c,EnsemblGenomes-Tr:CAL34755,GOA:Q0PAQ8,InterPro:IPR013831,UniProtKB/TrEMBL:Q0PAQ8,NCBI_GP:CAL34755.1;Name=CAL34755.1;Note=Original (2000) note: Cj0609c%2C possible periplasmic protein%2C len: 392 aa%3B no Hp match. Contains possible N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0609c;product=possible periplasmic protein;protein_id=CAL34755.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	570111	571121	.	-	.	ID=gene-Cj0610c;Name=Cj0610c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0610c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	570111	571121	.	-	0	ID=cds-CAL34756.1;Parent=gene-Cj0610c;Dbxref=EnsemblGenomes-Gn:Cj0610c,EnsemblGenomes-Tr:CAL34756,GOA:Q0PAQ7,InterPro:IPR013831,UniProtKB/TrEMBL:Q0PAQ7,NCBI_GP:CAL34756.1;Name=CAL34756.1;Note=Original (2000) note: Cj0610c%2C probable periplasmic protein%2C len: 336 aa%3B no Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF04311 Protein of unknown function (DUF459) was identified within CDS. Product function kept the same. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Pfam:PF04311;locus_tag=Cj0610c;product=putative periplasmic protein;protein_id=CAL34756.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	570132	571049	.	-	.	ID=id-Cj0610c;Note=HMMPfam hit to PF04311%2C Protein of unknown function (DUF459)%2C score 1.7e-184;gbkey=misc_feature;inference=protein motif:Pfam:PF04311;locus_tag=Cj0610c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	571035	571103	.	-	.	ID=id-Cj0610c-2;Note=1 probable transmembrane helix predicted for Cj0610c by TMHMM2.0 at aa 7-29;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0610c
gi|15791399|ref|NC_002163.1|	EMBL	gene	571122	572498	.	-	.	ID=gene-Cj0611c;Name=Cj0611c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0611c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	571122	572498	.	-	0	ID=cds-CAL34757.1;Parent=gene-Cj0611c;Dbxref=EnsemblGenomes-Gn:Cj0611c,EnsemblGenomes-Tr:CAL34757,GOA:Q0PAQ6,InterPro:IPR004299,InterPro:IPR024194,InterPro:IPR028362,UniProtKB/TrEMBL:Q0PAQ6,NCBI_GP:CAL34757.1;Name=CAL34757.1;Note=Original (2000) note: Cj0611c%2C probable transmembrane transport protein%2C len: 458 aa%3B similar to e.g. TR:Q51392 (EMBL:U50202) Pseudomonas aeruginosa ALGI (520 aa)%2C fasta scores%3B opt: 729 z-score: 779.3 E(): 0%2C32.5%25 identity in 428 aa overlap%2C and DLTB_BACSU DLTB protein (395 aa)%2C fasta scores%3B opt: 431 z-score: 482.4 E(): 1.4e-19%2C 29.6%25 identity in 361 aa overlap. 32.9%25 identity to HP0855%3B~Updated (2006) note: Pfam domain PF03062 MBOAT family identified within CDS. Also%2C 11 probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity scores identified yet. Putative kept within product function. Functional classification - Misc%3B~PMID:8636017%2C PMID:11208804;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;product=putative acyltransferase family protein;protein_id=CAL34757.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	571167	571235	.	-	.	ID=id-Cj0611c;Note=11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22%2C 32-66%2C 73-95%2C 110-132%2C144-163%2C 183-205%2C 236-258%2C 319-341%2C 348-370%2C 396-415 and 422-444;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;part=1/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	571254	571313	.	-	.	ID=id-Cj0611c;Note=11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22%2C 32-66%2C 73-95%2C 110-132%2C144-163%2C 183-205%2C 236-258%2C 319-341%2C 348-370%2C 396-415 and 422-444;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;part=2/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	571389	571457	.	-	.	ID=id-Cj0611c;Note=11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22%2C 32-66%2C 73-95%2C 110-132%2C144-163%2C 183-205%2C 236-258%2C 319-341%2C 348-370%2C 396-415 and 422-444;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;part=3/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	571476	571544	.	-	.	ID=id-Cj0611c;Note=11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22%2C 32-66%2C 73-95%2C 110-132%2C144-163%2C 183-205%2C 236-258%2C 319-341%2C 348-370%2C 396-415 and 422-444;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;part=4/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	571725	571793	.	-	.	ID=id-Cj0611c;Note=11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22%2C 32-66%2C 73-95%2C 110-132%2C144-163%2C 183-205%2C 236-258%2C 319-341%2C 348-370%2C 396-415 and 422-444;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;part=5/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	571884	571952	.	-	.	ID=id-Cj0611c;Note=11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22%2C 32-66%2C 73-95%2C 110-132%2C144-163%2C 183-205%2C 236-258%2C 319-341%2C 348-370%2C 396-415 and 422-444;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;part=6/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	572010	572069	.	-	.	ID=id-Cj0611c;Note=11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22%2C 32-66%2C 73-95%2C 110-132%2C144-163%2C 183-205%2C 236-258%2C 319-341%2C 348-370%2C 396-415 and 422-444;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;part=7/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	572103	572171	.	-	.	ID=id-Cj0611c;Note=11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22%2C 32-66%2C 73-95%2C 110-132%2C144-163%2C 183-205%2C 236-258%2C 319-341%2C 348-370%2C 396-415 and 422-444;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;part=8/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	572214	572282	.	-	.	ID=id-Cj0611c;Note=11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22%2C 32-66%2C 73-95%2C 110-132%2C144-163%2C 183-205%2C 236-258%2C 319-341%2C 348-370%2C 396-415 and 422-444;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;part=9/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	572301	572405	.	-	.	ID=id-Cj0611c;Note=11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22%2C 32-66%2C 73-95%2C 110-132%2C144-163%2C 183-205%2C 236-258%2C 319-341%2C 348-370%2C 396-415 and 422-444;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;part=10/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	572433	572486	.	-	.	ID=id-Cj0611c;Note=11 probable transmembrane helices predicted for Cj0611c by TMHMM2.0 at aa 5-22%2C 32-66%2C 73-95%2C 110-132%2C144-163%2C 183-205%2C 236-258%2C 319-341%2C 348-370%2C 396-415 and 422-444;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0611c;part=11/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	571377	572195	.	-	.	ID=id-Cj0611c-2;Note=HMMPfam hit to PF03062%2C MBOAT family%2C score 4.1e-80;gbkey=misc_feature;inference=protein motif:Pfam:PF03062;locus_tag=Cj0611c
gi|15791399|ref|NC_002163.1|	EMBL	gene	572541	573044	.	-	.	ID=gene-Cj0612c;Name=cft;gbkey=Gene;gene=cft;gene_biotype=protein_coding;locus_tag=Cj0612c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	572541	573044	.	-	0	ID=cds-CAL34758.1;Parent=gene-Cj0612c;Dbxref=EnsemblGenomes-Gn:Cj0612c,EnsemblGenomes-Tr:CAL34758,GOA:Q46106,InterPro:IPR001519,InterPro:IPR008331,InterPro:IPR009040,InterPro:IPR009078,InterPro:IPR012347,PDB:1KRQ,NCBI_GP:CAL34758.1;Name=CAL34758.1;Note=Original (2000) note: Cj0612c%2C cft%2C probable ferritin%2C len: 167 aa%3B identical to TR:Q46106 (EMBL:D64082)%2C and similar to many e.g. FTN_ECOLI ferritin (165 aa)%2C fasta scores%3B opt: 535 z-score: 957.6 E(): 0%2C47.2%25 identity in 161 aa overlap. 63.9%25 identity to HP0653. Contains Pfam match to entry PF00210 ferritin%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Functional classification -Transport/binding proteins - Cations%3B~PMID:8809765;gbkey=CDS;gene=cft;inference=protein motif:Pfam:PF00210;locus_tag=Cj0612c;product=ferritin;protein_id=CAL34758.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	572613	573026	.	-	.	ID=id-Cj0612c;Note=HMMPfam hit to PF00210%2C Ferritin-like domain%2C score 6.7e-50;gbkey=misc_feature;gene=cft;inference=protein motif:Pfam:PF00210;locus_tag=Cj0612c
gi|15791399|ref|NC_002163.1|	EMBL	gene	573224	574219	.	+	.	ID=gene-Cj0613;Name=pstS;gbkey=Gene;gene=pstS;gene_biotype=protein_coding;locus_tag=Cj0613
gi|15791399|ref|NC_002163.1|	EMBL	CDS	573224	574219	.	+	0	ID=cds-CAL34759.1;Parent=gene-Cj0613;Dbxref=EnsemblGenomes-Gn:Cj0613,EnsemblGenomes-Tr:CAL34759,InterPro:IPR024370,UniProtKB/TrEMBL:Q0PAQ4,NCBI_GP:CAL34759.1;Name=CAL34759.1;Note=Original (2000) note: Cj0613%2C pstS%2C possible periplasmic phosphate binding protein%2C len: 167 aa%3B similar to e.g. SPHX_SYNP7 SPHX protein precursor (337 aa)%2C fasta scores%3B opt: 346 z-score: 602.6 E(): 2.9e-26%2C33.2%25 identity in 301 aa overlap. No Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Characterised within Escherichia coli%2C however%2C identity score was unnacceptable. Putative kept within product function. Functional classification - Transport/binding proteins -Anions%3B~PMID:2651888%2C PMID:7741855;gbkey=CDS;gene=pstS;locus_tag=Cj0613;product=putative periplasmic phosphate binding protein;protein_id=CAL34759.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	574229	575143	.	+	.	ID=gene-Cj0614;Name=pstC;gbkey=Gene;gene=pstC;gene_biotype=protein_coding;locus_tag=Cj0614
gi|15791399|ref|NC_002163.1|	EMBL	CDS	574229	575143	.	+	0	ID=cds-CAL34760.1;Parent=gene-Cj0614;Dbxref=EnsemblGenomes-Gn:Cj0614,EnsemblGenomes-Tr:CAL34760,GOA:Q0PAQ3,InterPro:IPR000515,InterPro:IPR011864,UniProtKB/TrEMBL:Q0PAQ3,NCBI_GP:CAL34760.1;Name=CAL34760.1;Note=Original (2000) note: Cj0614%2C pstC%2C probable phosphate transport system permease protein%2C len: 304 aa%3B similar to e.g. PSTC_ECOLI phosphate transport system permease protein (319 aa)%2C fasta scores%3B opt: 289 z-score: 590.3 E(): 1.4e-25%2C 28.9%25 identity in 305 aa overlap. No Hp ortholog. Also similar to downstream gene Cj0615 (30.7%25 identity in 254 aa overlap). Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Characterised within Pseudomonas putida and Escherichia coli%2C however%2C identity scores were unnacceptable. Putative kept within product function. Functional classification - Transport/binding proteins - Anions%3B~PMID:16232467%2C PMID:2646285;gbkey=CDS;gene=pstC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0614;product=putative phosphate transport system permease protein;protein_id=CAL34760.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	574253	574321	.	+	.	ID=id-Cj0614;Note=6 probable transmembrane helices predicted for Cj0614 by TMHMM2.0 at aa 9-31%2C 83-105%2C 118-140%2C 155-174%2C199-221 and 273-295;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0614;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	574475	574543	.	+	.	ID=id-Cj0614;Note=6 probable transmembrane helices predicted for Cj0614 by TMHMM2.0 at aa 9-31%2C 83-105%2C 118-140%2C 155-174%2C199-221 and 273-295;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0614;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	574580	574648	.	+	.	ID=id-Cj0614;Note=6 probable transmembrane helices predicted for Cj0614 by TMHMM2.0 at aa 9-31%2C 83-105%2C 118-140%2C 155-174%2C199-221 and 273-295;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0614;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	574691	574750	.	+	.	ID=id-Cj0614;Note=6 probable transmembrane helices predicted for Cj0614 by TMHMM2.0 at aa 9-31%2C 83-105%2C 118-140%2C 155-174%2C199-221 and 273-295;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0614;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	574823	574891	.	+	.	ID=id-Cj0614;Note=6 probable transmembrane helices predicted for Cj0614 by TMHMM2.0 at aa 9-31%2C 83-105%2C 118-140%2C 155-174%2C199-221 and 273-295;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0614;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	575045	575113	.	+	.	ID=id-Cj0614;Note=6 probable transmembrane helices predicted for Cj0614 by TMHMM2.0 at aa 9-31%2C 83-105%2C 118-140%2C 155-174%2C199-221 and 273-295;gbkey=misc_feature;gene=pstC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0614;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	574451	575128	.	+	.	ID=id-Cj0614-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 3.6e-16;gbkey=misc_feature;gene=pstC;inference=protein motif:Pfam:PF00528;locus_tag=Cj0614
gi|15791399|ref|NC_002163.1|	EMBL	gene	575140	576228	.	+	.	ID=gene-Cj0615;Name=pstA;gbkey=Gene;gene=pstA;gene_biotype=protein_coding;locus_tag=Cj0615
gi|15791399|ref|NC_002163.1|	EMBL	CDS	575140	576228	.	+	0	ID=cds-CAL34761.1;Parent=gene-Cj0615;Dbxref=EnsemblGenomes-Gn:Cj0615,EnsemblGenomes-Tr:CAL34761,GOA:Q0PAQ2,InterPro:IPR000515,InterPro:IPR005672,InterPro:IPR024573,UniProtKB/TrEMBL:Q0PAQ2,NCBI_GP:CAL34761.1;Name=CAL34761.1;Note=Original (2000) note: Cj0615%2C pstA%2C probable phosphate transport system permease protein%2C len: 362 aa%3B similar to e.g. PSTA_ECOLI phosphate transport system permease protein (296 aa)%2C fasta scores%3B opt: 346 z-score: 447.5 E(): 1.3e-17%2C 29.2%25 identity in 226 aa overlap. No Hp ortholog. Also similar to upstream gene Cj0614 (30.7%25 identity in 254 aa overlap). Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Characterised within Escherichia coli%2C however%2C identity scores were unnacceptable. Putative kept within product function. Functional classification - Transport/binding proteins -Anions%3B~PMID:2993631%2C PMID:2896188;gbkey=CDS;gene=pstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0615;product=putative phosphate transport system permease protein;protein_id=CAL34761.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	575200	575268	.	+	.	ID=id-Cj0615;Note=6 probable transmembrane helices predicted for Cj0615 by TMHMM2.0 at aa 21-43%2C 146-168%2C 188-210%2C 215-237%2C263-285 and 331-353;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0615;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	575575	575643	.	+	.	ID=id-Cj0615;Note=6 probable transmembrane helices predicted for Cj0615 by TMHMM2.0 at aa 21-43%2C 146-168%2C 188-210%2C 215-237%2C263-285 and 331-353;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0615;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	575701	575769	.	+	.	ID=id-Cj0615;Note=6 probable transmembrane helices predicted for Cj0615 by TMHMM2.0 at aa 21-43%2C 146-168%2C 188-210%2C 215-237%2C263-285 and 331-353;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0615;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	575782	575850	.	+	.	ID=id-Cj0615;Note=6 probable transmembrane helices predicted for Cj0615 by TMHMM2.0 at aa 21-43%2C 146-168%2C 188-210%2C 215-237%2C263-285 and 331-353;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0615;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	575926	575994	.	+	.	ID=id-Cj0615;Note=6 probable transmembrane helices predicted for Cj0615 by TMHMM2.0 at aa 21-43%2C 146-168%2C 188-210%2C 215-237%2C263-285 and 331-353;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0615;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	576130	576198	.	+	.	ID=id-Cj0615;Note=6 probable transmembrane helices predicted for Cj0615 by TMHMM2.0 at aa 21-43%2C 146-168%2C 188-210%2C 215-237%2C263-285 and 331-353;gbkey=misc_feature;gene=pstA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0615;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	575566	576213	.	+	.	ID=id-Cj0615-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 1.9e-17;gbkey=misc_feature;gene=pstA;inference=protein motif:Pfam:PF00528;locus_tag=Cj0615
gi|15791399|ref|NC_002163.1|	EMBL	gene	576225	576965	.	+	.	ID=gene-Cj0616;Name=pstB;gbkey=Gene;gene=pstB;gene_biotype=protein_coding;locus_tag=Cj0616
gi|15791399|ref|NC_002163.1|	EMBL	CDS	576225	576965	.	+	0	ID=cds-CAL34762.1;Parent=gene-Cj0616;Dbxref=EnsemblGenomes-Gn:Cj0616,EnsemblGenomes-Tr:CAL34762,GOA:Q9PHQ1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005670,InterPro:IPR015850,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL34762.1;Name=CAL34762.1;Note=Original (2000) note: Cj0616%2C pstB%2C probable phosphate transport ATP-binding protein%2C len: 246 aa%3B highly similar to many e.g. PSTB_ECOLI phosphate transport ATP-binding protein (257 aa)%2C fasta scores%3B opt: 788 z-score: 929.3 E(): 0. 49.0%25 identity in 247 aa overlap. No Hp ortholog. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative removed from product function. Functional classification -Transport/binding proteins - Anions%3B~PMID:2993631%2C PMID:8682808;gbkey=CDS;gene=pstB;inference=protein motif:Prosite:PS00211;locus_tag=Cj0616;product=phosphate transport ATP-binding protein;protein_id=CAL34762.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	576306	576875	.	+	.	ID=id-Cj0616;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 3.2e-51;gbkey=misc_feature;gene=pstB;inference=protein motif:Pfam:PF00005;locus_tag=Cj0616
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	576327	576350	.	+	.	ID=id-Cj0616-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=pstB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0616
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	576651	576695	.	+	.	ID=id-Cj0616-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=pstB;inference=protein motif:Prosite:PS00211;locus_tag=Cj0616
gi|15791399|ref|NC_002163.1|	EMBL	gene	577027	577638	.	+	.	ID=gene-Cj0617;Name=Cj0617;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0617
gi|15791399|ref|NC_002163.1|	EMBL	CDS	577027	577638	.	+	0	ID=cds-CAL34763.1;Parent=gene-Cj0617;Dbxref=EnsemblGenomes-Gn:Cj0617,EnsemblGenomes-Tr:CAL34763,InterPro:IPR022605,UniProtKB/TrEMBL:Q0PAQ0,NCBI_GP:CAL34763.1;Name=CAL34763.1;Note=Original (2000) note: Cj0617%2C unknown%2C len: 203 aa%3B no Hp match. A member of the 617 family of C.j. proteins containing homopolymeric tracts%3B similar to N-terminus of Cj1305c (38.9%25 identity in 180 aa overlap)%2C Cj1306c (39.2%25 identity in 181 aa overlap)%2C Cj1310c (37.4%25 identity in 182 aa overlap) and Cj1342c (49.7%25 identity in 191 aa overlap). The similarities continue in the downstream ORF Cj0618%2C suggesting that these two ORFs may encode a single protein%2C but are frameshifted w.r.t. each other. There is a poly-G tract at the site of the possible frameshift (577586..577594) and all of the similar genes contain variable poly-G tracts at this position. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0617;product=hypothetical protein Cj0617 (617 family);protein_id=CAL34763.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	577586	577594	.	+	.	ID=id-Cj0617;Note=G(9);gbkey=repeat_region;locus_tag=Cj0617
gi|15791399|ref|NC_002163.1|	EMBL	gene	577608	578255	.	+	.	ID=gene-Cj0618;Name=Cj0618;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0618
gi|15791399|ref|NC_002163.1|	EMBL	CDS	577608	578255	.	+	0	ID=cds-CAL34764.1;Parent=gene-Cj0618;Dbxref=EnsemblGenomes-Gn:Cj0618,EnsemblGenomes-Tr:CAL34764,InterPro:IPR022605,InterPro:IPR029058,UniProtKB/TrEMBL:Q0PAP9,NCBI_GP:CAL34764.1;Name=CAL34764.1;Note=Original (2000) note: Cj0618%2C unknown%2C len: 215 aa%3B no Hp match. A member of the 617 family of C.j. proteins containing homopolymeric tracts%3B similar to C-terminus of Cj1305c (36.7%25 identity in 221 aa overlap)%2C Cj1306c (39.1%25 identity in 220 aa overlap)%2C Cj1310c (33.6%25 identity in 220 aa overlap) and Cj1342c (43.4%25 identity in 221 aa overlap). The similarities continue from the upstream ORF Cj0617%2C suggesting that these two ORFs may encode a single protein%2C but are frameshifted w.r.t. each other. There is a poly-G tract at thesite of the possible frameshift (577586..577594) and all of the similar genes contain variable poly-G tracts at this position%3B~Updated (2006) note: Literature search identified paper giving functional link to motility. Functional classification - Unknown%3B~PMID:15066034;gbkey=CDS;locus_tag=Cj0618;product=hypothetical protein Cj0618 (617 family);protein_id=CAL34764.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	578345	579661	.	+	.	ID=gene-Cj0619;Name=Cj0619;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0619
gi|15791399|ref|NC_002163.1|	EMBL	CDS	578345	579661	.	+	0	ID=cds-CAL34765.1;Parent=gene-Cj0619;Dbxref=EnsemblGenomes-Gn:Cj0619,EnsemblGenomes-Tr:CAL34765,GOA:Q0PAP8,InterPro:IPR002528,UniProtKB/TrEMBL:Q0PAP8,NCBI_GP:CAL34765.1;Name=CAL34765.1;Note=Original (2000) note: Cj0619%2C probable integral membrane protein%2C len: 438 aa%3B similar to hypothetical proteins e.g. TR:O07940 B. subtilis YISQ (455 aa)%2C fasta scores%3B opt: 880 z-score: 1364.9 E(): 0%2C 32.1%25 identity in 446 aa overlap%2C and YEEO_ECOLI (547 aa)%2C fasta scores%3B opt: 164 z-score: 529.6 E(): 3.3e-22%2C 22.7%25 identity in 437 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01554 MatE was identified within CDS. This family of protein function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes%2C fluroquinolones%2Caminoglycosides and other structurally diverse antibodies and drugs. MatE proteins are found in bacteria%2C archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions (which this putative CDS has). Product modified to more specific family member due to motif match. Literature search identified paper giving further support. Functional classification -Membranes%2C lipoproteins and porins%3B~PMID:16048946;gbkey=CDS;inference=protein motif:Pfam:PF01554;locus_tag=Cj0619;product=putative MATE family transport protein;protein_id=CAL34765.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	578381	578449	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=1/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	578492	578551	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=2/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	578609	578677	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=3/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	578720	578788	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=4/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	578807	578875	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=5/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	578903	578971	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=6/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	579029	579097	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=7/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	579140	579208	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=8/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	579269	579328	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=9/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	579371	579439	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=10/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	579473	579541	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=11/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	579551	579610	.	+	.	ID=id-Cj0619;Note=12 probable transmembrane helices predicted for Cj0619 by TMHMM2.0 at aa 13-35%2C 50-69%2C 89-111%2C 126-148%2C155-177%2C 187-209%2C 229-251%2C 266-288%2C 309-328%2C 343-365%2C377-399 and 403-422;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0619;part=12/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	578384	578866	.	+	.	ID=id-Cj0619-2;Note=HMMPfam hit to PF01554%2C MatE%2C score 3.7e-19;gbkey=misc_feature;inference=protein motif:Pfam:PF01554;locus_tag=Cj0619
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	578507	578539	.	+	.	ID=id-Cj0619-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0619
gi|15791399|ref|NC_002163.1|	EMBL	gene	579637	580284	.	+	.	ID=gene-Cj0620;Name=Cj0620;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0620
gi|15791399|ref|NC_002163.1|	EMBL	CDS	579637	580284	.	+	0	ID=cds-CAL34766.1;Parent=gene-Cj0620;Dbxref=EnsemblGenomes-Gn:Cj0620,EnsemblGenomes-Tr:CAL34766,InterPro:IPR002725,UniProtKB/TrEMBL:Q0PAP7,NCBI_GP:CAL34766.1;Name=CAL34766.1;Note=Original (2000) note: Cj0620%2C unknown%2C len: 215 aa%3B some simlarity to TR:O58443 (EMBL:AB009490) Pyrococcus horikoshii PHCF016 (230 aa)%2C fasta scores%3B opt: 229 z-score: 237.3 E(): 6.4e-06%2C 26.9%25 identity in 197 aa overlap. 33.7%25 identity to HP0806%2C 25.0%25 identity to HP1401%3B~Updated (2006) note: Pfam domain PF01863 Protein of unknown function DUF45 identified within CDS. This motif has no known function. Members are found in some archaebacteria%2C as well as Helicobacter pylori (Epsilon Proteobacteria). The proteins are 190-240 amino acids long%2C with the C terminus being the most conserved region%2Ccontaining three conserved histidines. This motif is similar to that found in Zinc proteases%2C suggesting a possible role as a protease. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01863;locus_tag=Cj0620;product=conserved hypothetical protein Cj0620;protein_id=CAL34766.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	579682	580281	.	+	.	ID=id-Cj0620;Note=HMMPfam hit to PF01863%2C Protein of unknown function DUF45%2C score 1.1e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF01863;locus_tag=Cj0620
gi|15791399|ref|NC_002163.1|	EMBL	gene	580326	581846	.	+	.	ID=gene-Cj0621;Name=Cj0621;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0621
gi|15791399|ref|NC_002163.1|	EMBL	CDS	580326	581846	.	+	0	ID=cds-CAL34767.1;Parent=gene-Cj0621;Dbxref=EnsemblGenomes-Gn:Cj0621,EnsemblGenomes-Tr:CAL34767,UniProtKB/TrEMBL:Q0PAP6,NCBI_GP:CAL34767.1;Name=CAL34767.1;Note=Original (2000) note: Cj0621%2C unknown%2C len: 506 aa%3B similar to TR:E1186594 (EMBL:AJ003049) hypothetical protein HYDE from Wolinella succinogenes (546 aa)%2C fasta scores%3B opt: 207 z-score: 285.3 E(): 1.3e-08%2C 25.8%25 identity in 551 aa overlap. 23.2%25 identity to HP0635%3B~Updated (2006) note: Literature search identified paper linking product function to hydE-like protein. Functional classification - Conserved hypothetical proteins%3B~PMID:10533287;gbkey=CDS;locus_tag=Cj0621;product=hypothetical protein Cj0621;protein_id=CAL34767.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	581827	584016	.	+	.	ID=gene-Cj0622;Name=hypF;gbkey=Gene;gene=hypF;gene_biotype=protein_coding;locus_tag=Cj0622
gi|15791399|ref|NC_002163.1|	EMBL	CDS	581827	584016	.	+	0	ID=cds-CAL34768.1;Parent=gene-Cj0622;Dbxref=EnsemblGenomes-Gn:Cj0622,EnsemblGenomes-Tr:CAL34768,GOA:Q0PAP5,InterPro:IPR001792,InterPro:IPR004421,InterPro:IPR006070,InterPro:IPR011125,InterPro:IPR017945,InterPro:IPR017968,UniProtKB/TrEMBL:Q0PAP5,NCBI_GP:CAL34768.1;Name=CAL34768.1;Note=Original (2000) note: Cj0622%2C hypF%2C probable transcriptional regulatory protein%2C len: 729 aa%3B similar to many e.g. HYPF_ECOLI transcriptional regulatory protein HYPF (750 aa)%2C fasta scores%3B opt: 1166 z-score: 1359.5 E(): 0%2C 34.1%25 identity in 747 aa overlap. 35.0%25 identity to HP0048. Contains PS00150 Acylphosphatase signature 1 and Pfam match to entry PF01300 Sua5_yciO_yrdC%2CSUA5/yciO/yrdC family%3B~Updated (2006) note: Pfam domain PF07503 HypF finger was identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Product function updated with new EC number. Putative not added to product function. Functional classification - Energy metabolism -Respiration%3B~PMID:15504408%2C PMID:1849603;gbkey=CDS;gene=hypF;inference=protein motif:Prosite:PS00150;locus_tag=Cj0622;product=carbamoyltransferase;protein_id=CAL34768.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	581845	582093	.	+	.	ID=id-Cj0622;Note=HMMPfam hit to PF00708%2C Acylphosphatase%2C score 2.2e-07;gbkey=misc_feature;gene=hypF;inference=protein motif:Pfam:PF00708;locus_tag=Cj0622
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	581854	581886	.	+	.	ID=id-Cj0622-2;Note=PS00150 Acylphosphatase signature 1;gbkey=misc_feature;gene=hypF;inference=protein motif:Prosite:PS00150;locus_tag=Cj0622
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	582145	582249	.	+	.	ID=id-Cj0622-3;Note=HMMPfam hit to PF07503%2C HypF finger%2C score 2e-16;gbkey=misc_feature;gene=hypF;inference=protein motif:Pfam:PF07503;locus_tag=Cj0622
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	582295	582393	.	+	.	ID=id-Cj0622-4;Note=HMMPfam hit to PF07503%2C HypF finger%2C score 3.2e-16;gbkey=misc_feature;gene=hypF;inference=protein motif:Pfam:PF07503;locus_tag=Cj0622
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	582448	582969	.	+	.	ID=id-Cj0622-5;Note=HMMPfam hit to PF01300%2C yrdC domain%2C score 6.5e-52;gbkey=misc_feature;gene=hypF;inference=protein motif:Pfam:PF01300;locus_tag=Cj0622
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	583099	583305	.	+	.	ID=id-Cj0622-6;Note=HMMPfam hit to PF00814%2C Glycoprotease family%2C score 2.3e-18;gbkey=misc_feature;gene=hypF;inference=protein motif:Pfam:PF00814;locus_tag=Cj0622
gi|15791399|ref|NC_002163.1|	EMBL	gene	584094	584837	.	+	.	ID=gene-Cj0623;Name=hypB;gbkey=Gene;gene=hypB;gene_biotype=protein_coding;locus_tag=Cj0623
gi|15791399|ref|NC_002163.1|	EMBL	CDS	584094	584837	.	+	0	ID=cds-CAL34769.1;Parent=gene-Cj0623;Dbxref=EnsemblGenomes-Gn:Cj0623,EnsemblGenomes-Tr:CAL34769,GOA:Q0PAP4,InterPro:IPR003495,InterPro:IPR004392,InterPro:IPR012202,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAP4,NCBI_GP:CAL34769.1;Name=CAL34769.1;Note=Original (2000) note: Cj0623%2C hypB%2C probable hydrogenase isoenzymes formation protein%2C len: 247 aa%3B similar to many e.g. HYPB_ECOLI hydrogenase isoenzymes formation protein (290 aa)%2C fasta scores%3B opt: 691 z-score: 1142.3 E(): 0%2C 46.1%25 identity in 230 aa overlap. 44.2%25 identity to HP0900. Contains PS00028 Zinc finger%2CC2H2 type%2C domain%3B~Updated (2006) note: Pfam domain PF02492 CobW/HypB/UreG%2C nucleotide-binding domain was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism -Respiration%3B~PMID:7601092%2C PMID:1849603;gbkey=CDS;gene=hypB;inference=protein motif:Prosite:PS00028;locus_tag=Cj0623;product=hydrogenase isoenzymes formation protein;protein_id=CAL34769.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	584097	584162	.	+	.	ID=id-Cj0623;Note=PS00028 Zinc finger%2C C2H2 type%2C domain;gbkey=misc_feature;gene=hypB;inference=protein motif:Prosite:PS00028;locus_tag=Cj0623
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	584274	584765	.	+	.	ID=id-Cj0623-2;Note=HMMPfam hit to PF02492%2C CobW/HypB/UreG%2Cnucleotide-binding domain%2C score 4e-67;gbkey=misc_feature;gene=hypB;inference=protein motif:Pfam:PF02492;locus_tag=Cj0623
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	584427	584459	.	+	.	ID=id-Cj0623-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=hypB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0623
gi|15791399|ref|NC_002163.1|	EMBL	gene	584837	585118	.	+	.	ID=gene-Cj0624;Name=hypC;gbkey=Gene;gene=hypC;gene_biotype=protein_coding;locus_tag=Cj0624
gi|15791399|ref|NC_002163.1|	EMBL	CDS	584837	585118	.	+	0	ID=cds-CAL34770.1;Parent=gene-Cj0624;Dbxref=EnsemblGenomes-Gn:Cj0624,EnsemblGenomes-Tr:CAL34770,InterPro:IPR001109,UniProtKB/TrEMBL:Q0PAP3,NCBI_GP:CAL34770.1;Name=CAL34770.1;Note=Original (2000) note: Cj0624%2C hypC%2C probable hydrogenase isoenzymes formation protein%2C len: 93 aa%3B similar to many e.g. HYPC_ECOLI hydrogenase isoenzymes formation protein (90 aa)%2C fasta scores%3B opt: 145 z-score: 173.2 E(): 0.024%2C 35.9%25 identity in 78 aa overlap. 53.3%25 identity to HP0899%3B~Updated (2006) note: Pfam domain PF01455 HupF/HypC family protein was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Energy metabolism - Respiration%3B~PMID:8021226%2C PMID:1849603;gbkey=CDS;gene=hypC;inference=protein motif:Pfam:PF01455;locus_tag=Cj0624;product=hydrogenase isoenzymes formation protein;protein_id=CAL34770.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	584837	585058	.	+	.	ID=id-Cj0624;Note=HMMPfam hit to PF01455%2C HupF/HypC family%2C score 2e-26;gbkey=misc_feature;gene=hypC;inference=protein motif:Pfam:PF01455;locus_tag=Cj0624
gi|15791399|ref|NC_002163.1|	EMBL	gene	585102	586193	.	+	.	ID=gene-Cj0625;Name=hypD;gbkey=Gene;gene=hypD;gene_biotype=protein_coding;locus_tag=Cj0625
gi|15791399|ref|NC_002163.1|	EMBL	CDS	585102	586193	.	+	0	ID=cds-CAL34771.1;Parent=gene-Cj0625;Dbxref=EnsemblGenomes-Gn:Cj0625,EnsemblGenomes-Tr:CAL34771,GOA:Q0PAP2,InterPro:IPR002780,UniProtKB/TrEMBL:Q0PAP2,NCBI_GP:CAL34771.1;Name=CAL34771.1;Note=Original (2000) note: Cj0625%2C hypD%2C probable hydrogenase isoenzymes formation protein%2C len: 363 aa%3B similar to many e.g. HYPD_ECOLI hydrogenase isoenzymes formation protein (373 aa)%2C fasta scores%3B opt: 1097 z-score: 1671.2 E(): 0%2C 41.3%25 identity in 368 aa overlap. 58.5%25 identity to HP0898%3B~Updated (2006) note: Pfam domain PF01924 Hydrogenase formation hypA family protein was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism -Respiration%3B~PMID:1849603;gbkey=CDS;gene=hypD;inference=protein motif:Pfam:PF01924;locus_tag=Cj0625;product=hydrogenase isoenzymes formation protein;protein_id=CAL34771.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	585126	586184	.	+	.	ID=id-Cj0625;Note=HMMPfam hit to PF01924%2C Hydrogenase formation hypA family%2C score 8.6e-204;gbkey=misc_feature;gene=hypD;inference=protein motif:Pfam:PF01924;locus_tag=Cj0625
gi|15791399|ref|NC_002163.1|	EMBL	gene	586190	587164	.	+	.	ID=gene-Cj0626;Name=hypE;gbkey=Gene;gene=hypE;gene_biotype=protein_coding;locus_tag=Cj0626
gi|15791399|ref|NC_002163.1|	EMBL	CDS	586190	587164	.	+	0	ID=cds-CAL34772.1;Parent=gene-Cj0626;Dbxref=EnsemblGenomes-Gn:Cj0626,EnsemblGenomes-Tr:CAL34772,GOA:Q0PAP1,InterPro:IPR000728,InterPro:IPR010918,InterPro:IPR011854,InterPro:IPR016188,UniProtKB/TrEMBL:Q0PAP1,NCBI_GP:CAL34772.1;Name=CAL34772.1;Note=Original (2000) note: Cj0626%2C hypE%2C probable hydrogenase isoenzymes formation protein%2C len: 324 aa%3B similar to many e.g. HYPE_ECOLI hydrogenase isoenzymes formation protein (322 aa)%2C fasta scores%3B opt: 705 z-score: 923.2 E(): 0%2C 40.4%25 identity in 327 aa overlap. 46.8%25 identity to HP0047. Contains Pfam match to entry PF00586 AIRS%2C AIR synthase related proteins%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Energy metabolism - Respiration%3B~PMID:1849603;gbkey=CDS;gene=hypE;inference=protein motif:Pfam:PF00586;locus_tag=Cj0626;product=hydrogenase isoenzymes formation protein;protein_id=CAL34772.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	586190	586630	.	+	.	ID=id-Cj0626;Note=HMMPfam hit to PF00586%2C AIR synthase related protein%2C N-terminal dom%2C score 7.3e-21;gbkey=misc_feature;gene=hypE;inference=protein motif:Pfam:PF00586;locus_tag=Cj0626
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	586649	587098	.	+	.	ID=id-Cj0626-2;Note=HMMPfam hit to PF02769%2C AIR synthase related protein%2C C-terminal dom%2C score 3.7e-36;gbkey=misc_feature;gene=hypE;inference=protein motif:Pfam:PF02769;locus_tag=Cj0626
gi|15791399|ref|NC_002163.1|	EMBL	gene	587164	587508	.	+	.	ID=gene-Cj0627;Name=hypA;gbkey=Gene;gene=hypA;gene_biotype=protein_coding;locus_tag=Cj0627
gi|15791399|ref|NC_002163.1|	EMBL	CDS	587164	587508	.	+	0	ID=cds-CAL34773.1;Parent=gene-Cj0627;Dbxref=EnsemblGenomes-Gn:Cj0627,EnsemblGenomes-Tr:CAL34773,GOA:Q9PHP0,InterPro:IPR000688,InterPro:IPR020538,NCBI_GP:CAL34773.1;Name=CAL34773.1;Note=Original (2000) note: Cj0627%2C hypA%2C probable hydrogenase isoenzymes formation protein%2C len: 114 aa%3B similar to e.g. HYPA_AZOVI hydrogenase expression/formation protein (113 aa)%2C fasta scores%3B opt: 228 z-score: 397.9 E(): 7.2e-15%2C 32.4%25 identity in 111 aa overlap. 39.7%25 identity to HP0869. Contains Pfam match to entry PF01155 HypA%2C Hydrogenase expression/synthesis hypA family%3B~Updated (2006) note: Characterised within Azotobacter vinelandii and Escherichia coli with marginal identity scores. Putative not added to product function. Functional classification - Energy metabolism -Respiration%3B~PMID:1849603%2C PMID:1610901;gbkey=CDS;gene=hypA;inference=protein motif:Pfam:PF01155;locus_tag=Cj0627;product=hydrogenase expression/formation protein;protein_id=CAL34773.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	587164	587505	.	+	.	ID=id-Cj0627;Note=HMMPfam hit to PF01155%2C Hydrogenase expression/synthesis hypA family%2C score 3.3e-50;gbkey=misc_feature;gene=hypA;inference=protein motif:Pfam:PF01155;locus_tag=Cj0627
gi|15791399|ref|NC_002163.1|	EMBL	gene	587868	588371	.	+	.	ID=gene-Cj0628;Name=Cj0628;gbkey=Gene;gene_biotype=protein_coding;is_ordered=true;locus_tag=Cj0628;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	588373	591303	.	+	.	ID=gene-Cj0628;Name=Cj0628;gbkey=Gene;gene_biotype=protein_coding;is_ordered=true;locus_tag=Cj0628;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	CDS	587868	588371	.	+	0	ID=cds-CAL34774.1;Parent=gene-Cj0628;Dbxref=EnsemblGenomes-Gn:Cj0628,EnsemblGenomes-Tr:CAL34774,InterPro:IPR005546,UniProtKB/TrEMBL:Q0PAN9,NCBI_GP:CAL34774.1;Name=CAL34774.1;Note=Original (2000) note: Cj0628%2C probable lipoprotein%2Clen: 171 aa%3B no Hp match. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. There is a variable poly-T tract at the C-terminus T(4-5). T5 causes the ORF to stop here%2C T4 allows translation into the downstream ORF Cj0629. Similar to Cj1677 (42.4%25 identity in 172 aa overlap). Cj1677 has a non-variable poly-T tract in an quivalent position%2C which could allow translation into Cj1678 (highly similar to Cj0629)%3B~Original (2000) note: Cj0629%2C possible lipoprotein%2Clen: 978 aa%3B no Hp match. Contains a variable poly-T tract at the N-terminus T(4-5). T5 causes the ORF to start here%2CT4 allows translation from the upstream ORF Cj0628 (which contains a signal sequence and lipid attachment site). Highly similar to Cj1678 (90.7%25 identity in 901 aa overlap). Cj1678 has a non-variable poly-T tract in an quivalent position%2C which could allow translation from Cj1677 (similar to Cj0628)%3B~Updated (2006) note: Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj0628 and Cj0629 as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0628;product=putative lipoprotein;protein_id=CAL34774.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	588373	591303	.	+	0	ID=cds-CAL34774.1;Parent=gene-Cj0628;Dbxref=EnsemblGenomes-Gn:Cj0628,EnsemblGenomes-Tr:CAL34774,InterPro:IPR005546,UniProtKB/TrEMBL:Q0PAN9,NCBI_GP:CAL34774.1;Name=CAL34774.1;Note=Original (2000) note: Cj0628%2C probable lipoprotein%2Clen: 171 aa%3B no Hp match. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. There is a variable poly-T tract at the C-terminus T(4-5). T5 causes the ORF to stop here%2C T4 allows translation into the downstream ORF Cj0629. Similar to Cj1677 (42.4%25 identity in 172 aa overlap). Cj1677 has a non-variable poly-T tract in an quivalent position%2C which could allow translation into Cj1678 (highly similar to Cj0629)%3B~Original (2000) note: Cj0629%2C possible lipoprotein%2Clen: 978 aa%3B no Hp match. Contains a variable poly-T tract at the N-terminus T(4-5). T5 causes the ORF to start here%2CT4 allows translation from the upstream ORF Cj0628 (which contains a signal sequence and lipid attachment site). Highly similar to Cj1678 (90.7%25 identity in 901 aa overlap). Cj1678 has a non-variable poly-T tract in an quivalent position%2C which could allow translation from Cj1677 (similar to Cj0628)%3B~Updated (2006) note: Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj0628 and Cj0629 as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0628;product=putative lipoprotein;protein_id=CAL34774.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	587946	587978	.	+	.	ID=id-Cj0628;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0628
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	590479	591276	.	+	.	ID=id-Cj0628-2;Note=HMMPfam hit to PF03797%2C Autotransporter beta-domain%2C score 5.9e-38;gbkey=misc_feature;inference=protein motif:Pfam:PF03797;locus_tag=Cj0628
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	588369	588378	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:588369..588378;Note=G(10);gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	588981	591400	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:588981..591400;Note=repeat 2: identical to 1598048..1600468;gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	gene	591537	592502	.	-	.	ID=gene-Cj0630c;Name=holA;gbkey=Gene;gene=holA;gene_biotype=protein_coding;locus_tag=Cj0630c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	591537	592502	.	-	0	ID=cds-CAL34775.1;Parent=gene-Cj0630c;Dbxref=EnsemblGenomes-Gn:Cj0630c,EnsemblGenomes-Tr:CAL34775,GOA:Q0PAN8,InterPro:IPR010372,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAN8,NCBI_GP:CAL34775.1;Name=CAL34775.1;Note=Original (2000) note: Cj0630c%2C unknown%2C len: 321 aa%3B 26.6%25 identity to HP1247%3B~Updated (2006) note: Pfam domain PF06144 DNA polymerase III%2C delta subunit identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation has been carried out. Putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:11432857;gbkey=CDS;gene=holA;inference=protein motif:Pfam:PF06144;locus_tag=Cj0630c;product=putative DNA polymerase III%2C delta subunit;protein_id=CAL34775.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	591576	592448	.	-	.	ID=id-Cj0630c;Note=HMMPfam hit to PF06144%2C DNA polymerase III%2C delta subunit%2C score 0.0012;gbkey=misc_feature;gene=holA;inference=protein motif:Pfam:PF06144;locus_tag=Cj0630c
gi|15791399|ref|NC_002163.1|	EMBL	gene	592495	594429	.	-	.	ID=gene-Cj0631c;Name=Cj0631c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0631c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	592495	594429	.	-	0	ID=cds-CAL34776.1;Parent=gene-Cj0631c;Dbxref=EnsemblGenomes-Gn:Cj0631c,EnsemblGenomes-Tr:CAL34776,InterPro:IPR012340,InterPro:IPR022966,UniProtKB/TrEMBL:Q0PAN7,NCBI_GP:CAL34776.1;Name=CAL34776.1;Note=Original (2000) note: Cj0631c%2C possible ribonuclease%2C len: 644 aa%3B similar to members of the ribonuclease II (RNB) family%2C e.g. VACB_ECOLI VACB protein (813 aa)%2C fasta scores%3B opt: 503 z-score: 829.1 E(): 0%2C31.0%25 identity in 580 aa overlap. 35.1%25 identity to HP1248. Contains PS01175 Ribonuclease II family signature%2Cand Pfam match to entry PF00773 RNB%2C RNB-like proteins%3B~Updated (2006) note: Some characterisation within Escherichia coli%2C however%2C identity scores were marginal. Putative kept within product function. Functional classification - Degradation of macromolecules%3B~PMID:9603904;gbkey=CDS;inference=protein motif:Prosite:PS01175;locus_tag=Cj0631c;product=putative ribonuclease;protein_id=CAL34776.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	592870	592944	.	-	.	ID=id-Cj0631c;Note=PS01175 Ribonuclease II family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01175;locus_tag=Cj0631c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	592957	594024	.	-	.	ID=id-Cj0631c-2;Note=HMMPfam hit to PF00773%2C RNB-like protein%2C score 1.9e-59;gbkey=misc_feature;inference=protein motif:Pfam:PF00773;locus_tag=Cj0631c
gi|15791399|ref|NC_002163.1|	EMBL	gene	594548	595570	.	+	.	ID=gene-Cj0632;Name=ilvC;gbkey=Gene;gene=ilvC;gene_biotype=protein_coding;locus_tag=Cj0632
gi|15791399|ref|NC_002163.1|	EMBL	CDS	594548	595570	.	+	0	ID=cds-CAL34777.1;Parent=gene-Cj0632;Dbxref=EnsemblGenomes-Gn:Cj0632,EnsemblGenomes-Tr:CAL34777,GOA:Q9PHN5,InterPro:IPR000506,InterPro:IPR008927,InterPro:IPR013023,InterPro:IPR013116,InterPro:IPR013328,NCBI_GP:CAL34777.1;Name=CAL34777.1;Note=Original (2000) note: Cj0632%2C ilvC%2C probable ketol-acid reductoisomerase%2C len: 340 aa%3B similar to many e.g. ILVC_LACLA ketol-acid reductoisomerase (EC 1.1.1.86) (344 aa)%2C fasta scores%3B opt: 1275 z-score: 2051.2 E(): 0%2C60.5%25 identity in 319 aa overlap%2C and ILVC_ECOLI ketol-acid reductoisomerase (EC 1.1.1.86) (490 aa)%2C fasta scores%3B opt: 571 z-score: 742.6 E(): 0%2C 33.0%25 identity in 330 aa overlap. 52.6%25 identity to HP0330%3B~Updated (2006) note: Pfam domain PF01450 cetohydroxy acid isomeroreductase%2C catalytic domain identified within CDS. Further support given to product function. Characterised within more than one genus with acceptable identity scores. Putative not added to product function. Functional classification - Amino acid biosynthesis - Branched chain family%3B~PMID:3003115;gbkey=CDS;gene=ilvC;inference=protein motif:Pfam:PF01450;locus_tag=Cj0632;product=ketol-acid reductoisomerase;protein_id=CAL34777.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	595100	595537	.	+	.	ID=id-Cj0632;Note=HMMPfam hit to PF01450%2C Acetohydroxy acid isomeroreductase%2C catalyti%2C score 2e-84;gbkey=misc_feature;gene=ilvC;inference=protein motif:Pfam:PF01450;locus_tag=Cj0632
gi|15791399|ref|NC_002163.1|	EMBL	gene	595574	596656	.	+	.	ID=gene-Cj0633;Name=Cj0633;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0633
gi|15791399|ref|NC_002163.1|	EMBL	CDS	595574	596656	.	+	0	ID=cds-CAL34778.1;Parent=gene-Cj0633;Dbxref=EnsemblGenomes-Gn:Cj0633,EnsemblGenomes-Tr:CAL34778,GOA:Q0PAN5,InterPro:IPR002509,InterPro:IPR006837,InterPro:IPR011330,UniProtKB/TrEMBL:Q0PAN5,NCBI_GP:CAL34778.1;Name=CAL34778.1;Note=Original (2000) note: Cj0633%2C probable periplasmic protein%2C len: 360 aa%3B similar in C-terminus to hypothetical proteins e.g. TR:O51711 (EMBL:AE001176) Borrelia burgdorferi BB0770 (293 aa)%2C fasta scores%3B opt: 425 z-score: 553.2 E(): 1.6e-23%2C 36.3%25 identity in 237 aa overlap. No Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF04748 Divergent polysaccharide deacetylase identified within CDS. No specific characterisation has been carried out yet. Product function unchanged. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Pfam:PF04748;locus_tag=Cj0633;product=putative periplasmic protein;protein_id=CAL34778.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	595607	595666	.	+	.	ID=id-Cj0633;Note=1 probable transmembrane helix predicted for Cj0633 by TMHMM2.0 at aa 12-31;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0633
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	596024	596650	.	+	.	ID=id-Cj0633-2;Note=HMMPfam hit to PF04748%2C Divergent polysaccharide deacetylase%2C score 1.4e-112;gbkey=misc_feature;inference=protein motif:Pfam:PF04748;locus_tag=Cj0633
gi|15791399|ref|NC_002163.1|	EMBL	gene	596646	597419	.	+	.	ID=gene-Cj0634;Name=dprA;gbkey=Gene;gene=dprA;gene_biotype=protein_coding;locus_tag=Cj0634
gi|15791399|ref|NC_002163.1|	EMBL	CDS	596646	597419	.	+	0	ID=cds-CAL34779.1;Parent=gene-Cj0634;Dbxref=EnsemblGenomes-Gn:Cj0634,EnsemblGenomes-Tr:CAL34779,GOA:Q0PAN4,InterPro:IPR003488,UniProtKB/TrEMBL:Q0PAN4,NCBI_GP:CAL34779.1;Name=CAL34779.1;Note=Original (2000) note: Cj0634%2C unknown%2C len: 257 aa%3B similar%2C in part%2C to members of the SMF family e.g. SMF_HAEIN SMF protein (DNA processing chain A) (373 aa)%2Cfasta scores%3B opt: 329 z-score: 487.6 E(): 7.2e-20%2C 31.5%25 identity in 213 aa overlap. 48.8%25 identity to HP0333%3B~Updated (2006) note: Pfam domain PF02481 SMF family identified within CDS. Further support given to product function. Literature search identified Campylobacter jejuni characterising paper. Product modified to more specific family member. Functional classification - DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:16194595;gbkey=CDS;gene=dprA;inference=protein motif:Pfam:PF02481;locus_tag=Cj0634;product=DNA processing protein A;protein_id=CAL34779.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	596649	597236	.	+	.	ID=id-Cj0634;Note=HMMPfam hit to PF02481%2C SMF family%2C score 2e-53;gbkey=misc_feature;gene=dprA;inference=protein motif:Pfam:PF02481;locus_tag=Cj0634
gi|15791399|ref|NC_002163.1|	EMBL	gene	597416	597799	.	+	.	ID=gene-Cj0635;Name=Cj0635;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0635
gi|15791399|ref|NC_002163.1|	EMBL	CDS	597416	597799	.	+	0	ID=cds-CAL34780.1;Parent=gene-Cj0635;Dbxref=EnsemblGenomes-Gn:Cj0635,EnsemblGenomes-Tr:CAL34780,GOA:Q9PHN2,InterPro:IPR005227,InterPro:IPR006641,InterPro:IPR012337,NCBI_GP:CAL34780.1;Name=CAL34780.1;Note=Original (2000) note: Cj0635%2C unknown%2C len: 127 aa%3B similar to hypothetical proteins e.g. YQGF_ECOLI (138 aa)%2Cfasta scores%3B opt: 154 z-score: 261.0 E(): 3e-07%2C 32.8%25 identity in 131 aa overlap. 44.1%25 identity to HP0334%3B~Updated (2006) note: Marginal identity score with partially characterised Escherichia coli. Product modified to new function. Putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:10982859%2C PMID:12153044;gbkey=CDS;locus_tag=Cj0635;product=putative holliday junction resolvase;protein_id=CAL34780.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	597416	597796	.	+	.	ID=id-Cj0635;Note=HMMPfam hit to PF03652%2C Uncharacterised protein family (UPF0081)%2C score 1e-52;gbkey=misc_feature;inference=protein motif:Pfam:PF03652;locus_tag=Cj0635
gi|15791399|ref|NC_002163.1|	EMBL	gene	597828	598667	.	+	.	ID=gene-Cj0636;Name=Cj0636;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0636
gi|15791399|ref|NC_002163.1|	EMBL	CDS	597828	598667	.	+	0	ID=cds-CAL34781.1;Parent=gene-Cj0636;Dbxref=EnsemblGenomes-Gn:Cj0636,EnsemblGenomes-Tr:CAL34781,InterPro:IPR001678,InterPro:IPR023267,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PAN2,NCBI_GP:CAL34781.1;Name=CAL34781.1;Note=Original (2000) note: Cj0636%2C unknown%2C len: 279 aa%3B similar to members of the NOL1/NOP2/sun family e.g. Y026_METJA MJ0026 (274 aa)%2C fasta scores%3B opt: 422 z-score: 688.4 E(): 4.8e-31%2C 33.9%25 identity in 280 aa overlap. No Hp match. Contains Pfam match to entry PF01189 Nol1_Nop2_Sun%2C NOL1/NOP2/sun family. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01189;locus_tag=Cj0636;product=NOL1/NOP2/sun family protein;protein_id=CAL34781.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	597837	598655	.	+	.	ID=id-Cj0636;Note=HMMPfam hit to PF01189%2C NOL1/NOP2/sun family%2C score 2.4e-30;gbkey=misc_feature;inference=protein motif:Pfam:PF01189;locus_tag=Cj0636
gi|15791399|ref|NC_002163.1|	EMBL	gene	598843	599340	.	-	.	ID=gene-Cj0637c;Name=mrsA;gbkey=Gene;gene=mrsA;gene_biotype=protein_coding;locus_tag=Cj0637c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	598843	599340	.	-	0	ID=cds-CAL34782.1;Parent=gene-Cj0637c;Dbxref=EnsemblGenomes-Gn:Cj0637c,EnsemblGenomes-Tr:CAL34782,GOA:Q9PHN0,InterPro:IPR002569,InterPro:IPR028427,NCBI_GP:CAL34782.1;Name=CAL34782.1;Note=Original (2000) note: Cj0637c%2C mrsA%2C probable peptide methionine sulfoxide reductase%2C len: 165 aa%3B highly similar to many e.g. PMSR_STRPN peptide methionine sulfoxide reductase (312 aa)%2C fasta scores%3B opt: 413 z-score: 690.6 E(): 3.6e-31%2C 39.5%25 identity in 152 aa overlap. 43.3%25 identity to HP0224. May be necessary for the production and maintenance of functional adhesins on the cell surface. See Proc. Natl. Acad. Sci. U.S.A. 93:7985-7990(1996)%3B~Updated (2006) note: Pfam domain PF01625 Peptide methionine sulfoxide reductase identified within CDS. Further support given to product function. Characterised within Escherichia coli%2C however%2C marginal identity score was obtained. Putative kept within product function. Functional classification - Pathogenicity%3B~PMID:1386361%2C PMID:10964927;gbkey=CDS;gene=mrsA;inference=protein motif:Pfam:PF01625;locus_tag=Cj0637c;product=putative peptide methionine sulfoxide reductase;protein_id=CAL34782.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	598873	599337	.	-	.	ID=id-Cj0637c;Note=HMMPfam hit to PF01625%2C Peptide methionine sulfoxide reductase%2C score 2.4e-66;gbkey=misc_feature;gene=mrsA;inference=protein motif:Pfam:PF01625;locus_tag=Cj0637c
gi|15791399|ref|NC_002163.1|	EMBL	gene	599381	599899	.	-	.	ID=gene-Cj0638c;Name=ppa;gbkey=Gene;gene=ppa;gene_biotype=protein_coding;locus_tag=Cj0638c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	599381	599899	.	-	0	ID=cds-CAL34783.1;Parent=gene-Cj0638c;Dbxref=EnsemblGenomes-Gn:Cj0638c,EnsemblGenomes-Tr:CAL34783,GOA:Q9PHM9,InterPro:IPR008162,NCBI_GP:CAL34783.1;Name=CAL34783.1;Note=Original (2000) note: Cj0638c%2C ppa%2C probable inorganic pyrophosphatase%2C len: 172 aa%3B highly similar to many e.g. IPYR_ECOLI inorganic pyrophosphatase (EC 3.6.1.1) (175 aa)%2C fasta scores%3B opt: 564 z-score: 990.9 E(): 0%2C 54.0%25 identity in 161 aa overlap. 59.3%25 identity to HP0620. Contains PS00387 Inorganic pyrophosphatase signature and Pfam match to entry PF00719 Pyrophosphatase%2CInorganic pyrophosphatase%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Literature search identified paper linking protein to glycoprotein (PMID:12186869). Functional classification - Central intermediary metabolism - General%3B~PMID:12186869%2C PMID:2848015%2C PMID:9201917;gbkey=CDS;gene=ppa;inference=protein motif:Prosite:PS00387;locus_tag=Cj0638c;product=inorganic pyrophosphatase;protein_id=CAL34783.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	599384	599854	.	-	.	ID=id-Cj0638c;Note=HMMPfam hit to PF00719%2C Inorganic pyrophosphatase%2Cscore 2.4e-53;gbkey=misc_feature;gene=ppa;inference=protein motif:Pfam:PF00719;locus_tag=Cj0638c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	599690	599710	.	-	.	ID=id-Cj0638c-2;Note=PS00387 Inorganic pyrophosphatase signature;gbkey=misc_feature;gene=ppa;inference=protein motif:Prosite:PS00387;locus_tag=Cj0638c
gi|15791399|ref|NC_002163.1|	EMBL	gene	599909	600487	.	-	.	ID=gene-Cj0639c;Name=adk;gbkey=Gene;gene=adk;gene_biotype=protein_coding;locus_tag=Cj0639c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	599909	600487	.	-	0	ID=cds-CAL34784.1;Parent=gene-Cj0639c;Dbxref=EnsemblGenomes-Gn:Cj0639c,EnsemblGenomes-Tr:CAL34784,GOA:Q9PHM8,InterPro:IPR000850,InterPro:IPR027417,NCBI_GP:CAL34784.1;Name=CAL34784.1;Note=Original (2000) note: Cj0639c%2C adk%2C possible adenylate kinase%2C len: 192 aa%3B similar to many e.g. KAD_PRUAR adenylate kinase (EC 2.7.4.3) (231 aa)%2C fasta scores%3B opt: 324 z-score: 432.2 E(): 8.9e-17%2C 33.9%25 identity in 183 aa overlap. 62.4%25 identity to HP0618. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2CPS00113 Adenylate kinase signature and Pfam match to entry PF00406 adenylatekinase%2C Adenylate kinase%3B~Updated (2006) note: Characterised within Escherichia coli and Bacillus subtilis with marginal identity scores. Appropriate motifs present. Putative not added to product function. Functional classification -Central intermediary metabolism - General%3B~PMID:2997739%2C PMID:15100224;gbkey=CDS;gene=adk;inference=protein motif:Prosite:PS00113;locus_tag=Cj0639c;product=adenylate kinase;protein_id=CAL34784.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	599993	600469	.	-	.	ID=id-Cj0639c;Note=HMMPfam hit to PF00406%2C Adenylate kinase%2C score 2.4e-40;gbkey=misc_feature;gene=adk;inference=protein motif:Pfam:PF00406;locus_tag=Cj0639c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	600203	600238	.	-	.	ID=id-Cj0639c-2;Note=PS00113 Adenylate kinase signature;gbkey=misc_feature;gene=adk;inference=protein motif:Prosite:PS00113;locus_tag=Cj0639c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	600440	600463	.	-	.	ID=id-Cj0639c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=adk;inference=protein motif:Prosite:PS00017;locus_tag=Cj0639c
gi|15791399|ref|NC_002163.1|	EMBL	gene	600484	602235	.	-	.	ID=gene-Cj0640c;Name=aspS;gbkey=Gene;gene=aspS;gene_biotype=protein_coding;locus_tag=Cj0640c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	600484	602235	.	-	0	ID=cds-CAL34785.1;Parent=gene-Cj0640c;Dbxref=EnsemblGenomes-Gn:Cj0640c,EnsemblGenomes-Tr:CAL34785,GOA:Q9PHM7,InterPro:IPR002312,InterPro:IPR004115,InterPro:IPR004364,InterPro:IPR004365,InterPro:IPR004524,InterPro:IPR006195,InterPro:IPR012340,InterPro:IPR018150,InterPro:IPR029351,NCBI_GP:CAL34785.1;Name=CAL34785.1;Note=Original (2000) note: Cj0640c%2C aspS%2C probable aspartyl-tRNA synthetase%2C len: 583 aa%3B highly simlar to many e.g. SYD_ECOLI aspartyl-tRNA synthetase (EC 6.1.1.12) (590 aa)%2C fasta scores%3B opt: 1951 z-score: 2706.1 E(): 0%2C51.6%25 identity in 589 aa overlap. 64.1%25 identity to HP0617. Contains PS00179 and PS00339 Aminoacyl-transfer RNA synthetases class-II signatures 1 and 2%2C and Pfam match to entry PF00152 tRNA-synt_2%2C tRNA synthetases class II%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:2129559;gbkey=CDS;gene=aspS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0640c;product=aspartyl-tRNA synthetase;protein_id=CAL34785.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	600574	601881	.	-	.	ID=id-Cj0640c;Note=HMMPfam hit to PF00152%2C tRNA synthetases class II (D%2C K and N)%2C score 1.8e-24;gbkey=misc_feature;gene=aspS;inference=protein motif:Pfam:PF00152;locus_tag=Cj0640c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	600628	600657	.	-	.	ID=id-Cj0640c-2;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=aspS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0640c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	601021	601311	.	-	.	ID=id-Cj0640c-3;Note=HMMPfam hit to PF02938%2C GAD domain%2C score 1.9e-31;gbkey=misc_feature;gene=aspS;inference=protein motif:Pfam:PF02938;locus_tag=Cj0640c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	601531	601584	.	-	.	ID=id-Cj0640c-4;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=aspS;inference=protein motif:Prosite:PS00179;locus_tag=Cj0640c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	601927	602184	.	-	.	ID=id-Cj0640c-5;Note=HMMPfam hit to PF01336%2C OB-fold nucleic acid binding domain%2C score 3.7e-26;gbkey=misc_feature;gene=aspS;inference=protein motif:Pfam:PF01336;locus_tag=Cj0640c
gi|15791399|ref|NC_002163.1|	EMBL	gene	602326	603186	.	+	.	ID=gene-Cj0641;Name=Cj0641;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0641
gi|15791399|ref|NC_002163.1|	EMBL	CDS	602326	603186	.	+	0	ID=cds-CAL34786.1;Parent=gene-Cj0641;Dbxref=EnsemblGenomes-Gn:Cj0641,EnsemblGenomes-Tr:CAL34786,GOA:Q9PHM6,InterPro:IPR002504,InterPro:IPR016064,InterPro:IPR017437,InterPro:IPR017438,NCBI_GP:CAL34786.1;Name=CAL34786.1;Note=Original (2000) note: Cj0641%2C unknown%2C len: 286 aa%3B similar to hypothetical proteins e.g. YFJB_ECOLI (292 aa)%2Cfasta scores%3B opt: 451 z-score: 649.8 E(): 6.7e-29%2C 31.9%25 identity in 288 aa overlap. 37.2%25 identity to HP1394%3B~Updated (2006) note: Pfam domain PF01513 ATP-NAD kinase identified within CDS. Partially characterised within Escherichia coli with marginal identity score. Motif identification gives further support to new product function. Functional classification - Central intermediary metabolism - General;gbkey=CDS;inference=protein motif:Pfam:PF01513;locus_tag=Cj0641;product=putative inorganic polyphosphate/ATP-NAD kinase;protein_id=CAL34786.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	602359	603135	.	+	.	ID=id-Cj0641;Note=HMMPfam hit to PF01513%2C ATP-NAD kinase%2C score 4.4e-54;gbkey=misc_feature;inference=protein motif:Pfam:PF01513;locus_tag=Cj0641
gi|15791399|ref|NC_002163.1|	EMBL	gene	603186	604709	.	+	.	ID=gene-Cj0642;Name=recN;gbkey=Gene;gene=recN;gene_biotype=protein_coding;locus_tag=Cj0642
gi|15791399|ref|NC_002163.1|	EMBL	CDS	603186	604709	.	+	0	ID=cds-CAL34787.1;Parent=gene-Cj0642;Dbxref=EnsemblGenomes-Gn:Cj0642,EnsemblGenomes-Tr:CAL34787,GOA:Q9PHM5,InterPro:IPR004604,InterPro:IPR027417,NCBI_GP:CAL34787.1;Name=CAL34787.1;Note=Original (2000) note: Cj0642%2C recN%2C possible DNA repair protein%2C len: 507 aa%3B some similarity to e.g. RECN_BACSU DNA repair protein RECN (576 aa)%2C fasta scores%3B opt: 272 z-score: 353.1 E(): 2.3e-12%2C 24.5%25 identity in 559 aa overlap. 36.1%25 identity to HP1393. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Characterised within Bacillus subtilis%2C however%2C identity score was unnacceptable. Putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:9044256;gbkey=CDS;gene=recN;inference=protein motif:Prosite:PS00017;locus_tag=Cj0642;product=putative DNA repair protein;protein_id=CAL34787.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	603270	603293	.	+	.	ID=id-Cj0642;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=recN;inference=protein motif:Prosite:PS00017;locus_tag=Cj0642
gi|15791399|ref|NC_002163.1|	EMBL	gene	604815	606059	.	+	.	ID=gene-Cj0643;Name=cbrR;gbkey=Gene;gene=cbrR;gene_biotype=protein_coding;locus_tag=Cj0643
gi|15791399|ref|NC_002163.1|	EMBL	CDS	604815	606059	.	+	0	ID=cds-CAL34788.1;Parent=gene-Cj0643;Dbxref=EnsemblGenomes-Gn:Cj0643,EnsemblGenomes-Tr:CAL34788,GOA:Q0PAM5,InterPro:IPR000160,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR029787,UniProtKB/TrEMBL:Q0PAM5,NCBI_GP:CAL34788.1;Name=CAL34788.1;Note=Original (2000) note: Cj0643%2C probable two-component response regulator%2C len: 414 aa%3B similar to e.g. TR:P97018 (EMBL:U67070) Aeromonas jandaei response regulator protein RRPX (415 aa)%2C fasta scores%3B opt: 597 z-score: 530.0 E(): 3.2e-22%2C 25.8%25 identity in 414 aa overlap%2C andTR:Q46020 (EMBL:L42554) Caulobacter crescentus response regulator PLED (454 aa)%2C fasta scores%3B opt: 286 z-score: 309.9 E(): 5.8e-10%2C 22.0%25 identity in 451 aa overlap. No Hp ortholog. Contains 2x Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain and Pfam match to entry PF00990 DUF9%2C Domain of unknown function%3B~Updated (2006) note: Pfam domain PF00990 has now been annotated as GGDEF domain that often happens to be linked to a regulatory domain. Further support given to product function. Literature search identified paper characterising Cj0643 and confirming it as a two-component response regulator and is designated as CbrR (Campylobacter bile resistance Regulator) protein. Functional classification - Signal transduction%3B~PMID:15901688;gbkey=CDS;gene=cbrR;inference=protein motif:Pfam:PF00990;locus_tag=Cj0643;product=two-component response regulator;protein_id=CAL34788.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	604821	605171	.	+	.	ID=id-Cj0643;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 3.7e-05;gbkey=misc_feature;gene=cbrR;inference=protein motif:Pfam:PF00072;locus_tag=Cj0643
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	605181	605546	.	+	.	ID=id-Cj0643-2;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 4.3e-07;gbkey=misc_feature;gene=cbrR;inference=protein motif:Pfam:PF00072;locus_tag=Cj0643
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	605559	606041	.	+	.	ID=id-Cj0643-3;Note=HMMPfam hit to PF00990%2C GGDEF domain%2C score 1.3e-23;gbkey=misc_feature;gene=cbrR;inference=protein motif:Pfam:PF00990;locus_tag=Cj0643
gi|15791399|ref|NC_002163.1|	EMBL	gene	606050	606865	.	+	.	ID=gene-Cj0644;Name=Cj0644;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0644
gi|15791399|ref|NC_002163.1|	EMBL	CDS	606050	606865	.	+	0	ID=cds-CAL34789.1;Parent=gene-Cj0644;Dbxref=EnsemblGenomes-Gn:Cj0644,EnsemblGenomes-Tr:CAL34789,GOA:Q0PAM4,InterPro:IPR001130,InterPro:IPR015991,InterPro:IPR018228,UniProtKB/TrEMBL:Q0PAM4,NCBI_GP:CAL34789.1;Name=CAL34789.1;Note=Original (2000) note: Cj0644%2C unknown%2C len: 271 aa%3B similar to hypothetical proteins e.g. YABD_BACSU (255 aa)%2Cfasta scores%3B opt: 614 z-score: 1024.7 E(): 0%2C 38.6%25 identity in 259 aa overlap. 49.2%25 identity to HP1573. Contains PS01137 Uncharacterized protein family UPF0006 signature 1 and Pfam match to entry PF01026 UPF0006%2CUncharacterized protein family%3B~Updated (2006) note: Pfam domain PF01026 TatD related DNase and Prosite domain PS01137 TATD_1%2CTatD-related deoxyribonuclease were identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS01137;locus_tag=Cj0644;product=putative TatD-related deoxyribonuclease protein;protein_id=CAL34789.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	606080	606853	.	+	.	ID=id-Cj0644;Note=HMMPfam hit to PF01026%2C TatD related DNase%2C score 1.2e-106;gbkey=misc_feature;inference=protein motif:Pfam:PF01026;locus_tag=Cj0644
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	606086	606112	.	+	.	ID=id-Cj0644-2;Note=PS01137 Uncharacterized protein family UPF0006 signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS01137;locus_tag=Cj0644
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	606581	606628	.	+	.	ID=id-Cj0644-3;Note=PS00225 Crystallins beta and gamma 'Greek key' motif signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00225;locus_tag=Cj0644
gi|15791399|ref|NC_002163.1|	EMBL	gene	606865	607983	.	+	.	ID=gene-Cj0645;Name=Cj0645;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0645
gi|15791399|ref|NC_002163.1|	EMBL	CDS	606865	607983	.	+	0	ID=cds-CAL34790.1;Parent=gene-Cj0645;Dbxref=EnsemblGenomes-Gn:Cj0645,EnsemblGenomes-Tr:CAL34790,GOA:Q0PAM3,InterPro:IPR008258,InterPro:IPR018392,InterPro:IPR023346,UniProtKB/TrEMBL:Q0PAM3,NCBI_GP:CAL34790.1;Name=CAL34790.1;Note=Original (2000) note: Cj0645%2C possible secreted transglycosylase%2C len: 372 aa%3B similar to members of the SLT family e.g. MLTD_ECOLI membrane-bound lytic murein transglycosylase D precursor (EC 3.2.1.-) (452 aa)%2C fasta scores%3B opt: 425 z-score: 431.3 E(): 1e-16%2C 28.4%25 identity in 348 aa overlap. 37.5%25 identity to HP1572. Contains N-terminal signal sequence%3B~Updated (2006) note: Pfam domains PF01464 Transglycosylase SLT domain PF01476 LysM domain were identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score and only partial alignment. Putative kept within product function. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:10843862;gbkey=CDS;inference=protein motif:Pfam:PF01476;locus_tag=Cj0645;product=putative secreted transglycosylase;protein_id=CAL34790.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	607081	607428	.	+	.	ID=id-Cj0645;Note=HMMPfam hit to PF01464%2C Transglycosylase SLT domain%2C score 1.5e-28;gbkey=misc_feature;inference=protein motif:Pfam:PF01464;locus_tag=Cj0645
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	607798	607926	.	+	.	ID=id-Cj0645-2;Note=HMMPfam hit to PF01476%2C LysM domain%2C score 1.7e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF01476;locus_tag=Cj0645
gi|15791399|ref|NC_002163.1|	EMBL	gene	607943	608770	.	+	.	ID=gene-Cj0646;Name=Cj0646;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0646
gi|15791399|ref|NC_002163.1|	EMBL	CDS	607943	608770	.	+	0	ID=cds-CAL34791.1;Parent=gene-Cj0646;Dbxref=EnsemblGenomes-Gn:Cj0646,EnsemblGenomes-Tr:CAL34791,GOA:Q9PHM1,InterPro:IPR007730,InterPro:IPR009009,InterPro:IPR012997,InterPro:IPR014733,NCBI_GP:CAL34791.1;Name=CAL34791.1;Note=Original (2000) note: Cj0646%2C probable lipoprotein%2Clen: 275 aa%3B similar to e.g. RLPA_ECOLI rare lipoprotein A precursor (362 aa)%2C fasta scores%3B opt: 251 z-score: 431.7 E(): 9.4e-17%2C 33.6%25 identity in 131 aa overlap. 50.2%25 identity to HP1571. Contains N-terminal signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domain PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel was identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0646;product=putative lipoprotein;protein_id=CAL34791.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	607961	608029	.	+	.	ID=id-Cj0646;Note=1 probable transmembrane helix predicted for Cj0646 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0646
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	607979	608011	.	+	.	ID=id-Cj0646-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0646
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	608171	608443	.	+	.	ID=id-Cj0646-3;Note=HMMPfam hit to PF03330%2C Rare lipoprotein A (RlpA)-like double-psi be%2C score 1.9e-44;gbkey=misc_feature;inference=protein motif:Pfam:PF03330;locus_tag=Cj0646
gi|15791399|ref|NC_002163.1|	EMBL	gene	608776	609264	.	+	.	ID=gene-Cj0647;Name=Cj0647;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0647
gi|15791399|ref|NC_002163.1|	EMBL	CDS	608776	609264	.	+	0	ID=cds-CAL34792.1;Parent=gene-Cj0647;Dbxref=EnsemblGenomes-Gn:Cj0647,EnsemblGenomes-Tr:CAL34792,GOA:Q0PAM1,InterPro:IPR006549,InterPro:IPR010023,InterPro:IPR023214,UniProtKB/TrEMBL:Q0PAM1,NCBI_GP:CAL34792.1;Name=CAL34792.1;Note=Original (2000) note: Cj0647%2C unknown%2C len: 162 aa%3B similar to hypothetical proteins e.g. YRBI_ECOLI (188 aa)%2C fasta scores%3B opt: 322 z-score: 399.6 E(): 5.8e-15%2C40.0%25 identity in 155 aa overlap. 40.9%25 identity to HP1570%3B~Updated (2006) note: Pfam domain PF08282 haloacid dehalogenase-like hydrolase was identified by running own search within CDS. Product modified to more specific family member due to motif match. No specific characterisation carried out yet. Putative kept within product function. Some similarity to recently characterised Escherichia coli 3-deoxy-d-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45)%2C KdsC%2C however%2C alignment was only partial. Functional classification - Misc%3B~PMID:12639950;gbkey=CDS;inference=protein motif:Pfam:PF08282;locus_tag=Cj0647;product=putative HAD-superfamily hydrolase;protein_id=CAL34792.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	609255	609770	.	+	.	ID=gene-Cj0648;Name=Cj0648;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0648
gi|15791399|ref|NC_002163.1|	EMBL	CDS	609255	609770	.	+	0	ID=cds-CAL34793.1;Parent=gene-Cj0648;Dbxref=EnsemblGenomes-Gn:Cj0648,EnsemblGenomes-Tr:CAL34793,UniProtKB/TrEMBL:Q0PAM0,NCBI_GP:CAL34793.1;Name=CAL34793.1;Note=Original (2000) note: Cj0648%2C unknwn%2C len: 171 aa%3B no Hp match%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Also%2C one N-terminal signal peptide predicted by SignalP 2.0 HMM. Product function modified to more specific family member. Putative kept within product function. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0648;product=putative membrane protein;protein_id=CAL34793.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	609267	609320	.	+	.	ID=id-Cj0648;Note=1 probable transmembrane helix predicted for Cj0648 by TMHMM2.0 at aa 5-22;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0648
gi|15791399|ref|NC_002163.1|	EMBL	gene	609752	610213	.	+	.	ID=gene-Cj0649;Name=Cj0649;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0649
gi|15791399|ref|NC_002163.1|	EMBL	CDS	609752	610213	.	+	0	ID=cds-CAL34794.1;Parent=gene-Cj0649;Dbxref=EnsemblGenomes-Gn:Cj0649,EnsemblGenomes-Tr:CAL34794,InterPro:IPR005653,UniProtKB/TrEMBL:Q0PAL9,NCBI_GP:CAL34794.1;Name=CAL34794.1;Note=Original (2000) note: Cj0649%2C unknown%2C len: 153 aa%3B 31.6%25 identity to HP1568%3B~Updated (2006) note: Pfam domain PF03968 OstA-like protein was identified within CDS. Product modified to more specific family member due to Pfam match. No specific characterisation has been carried out. Putative kept within product function. Functional classification -Conserved hypothetical proteins%3B~PMID:7811102;gbkey=CDS;inference=protein motif:Pfam:PF03968;locus_tag=Cj0649;product=putative OstA family protein;protein_id=CAL34794.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	609764	610210	.	+	.	ID=id-Cj0649;Note=HMMPfam hit to PF03968%2C OstA-like protein%2C score 5.1e-61;gbkey=misc_feature;inference=protein motif:Pfam:PF03968;locus_tag=Cj0649
gi|15791399|ref|NC_002163.1|	EMBL	gene	610210	610806	.	+	.	ID=gene-Cj0650;Name=Cj0650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0650
gi|15791399|ref|NC_002163.1|	EMBL	CDS	610210	610806	.	+	0	ID=cds-CAL34795.1;Parent=gene-Cj0650;Dbxref=EnsemblGenomes-Gn:Cj0650,EnsemblGenomes-Tr:CAL34795,GOA:Q9PHL7,InterPro:IPR005225,InterPro:IPR006073,InterPro:IPR019987,InterPro:IPR027417,NCBI_GP:CAL34795.1;Name=CAL34795.1;Note=Original (2000) note: Cj0650%2C putative ATP/GTP binding protein%2C len: 198 aa%3B similar to members of the UPF0009 family of hypothetical ATP/GTP binding proteins e.g. YIHA_ECOLI hypothetical GTP-binding protein (210 aa)%2Cfasta scores%3B opt: 322 z-score: 561.3 E(): 5.7e-24%2C 38.7%25 identity in 173 aa overlap. 49.5%25 identity to HP1567. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF01926 GTPase of unknown function was identified within CDS. Further support given to product function. No specific characterisation has been carried out. Putative kept within product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0650;product=putative ATP/GTP binding protein;protein_id=CAL34795.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	610276	610671	.	+	.	ID=id-Cj0650;Note=HMMPfam hit to PF01926%2C GTPase of unknown function%2Cscore 2.6e-26;gbkey=misc_feature;inference=protein motif:Pfam:PF01926;locus_tag=Cj0650
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	610294	610317	.	+	.	ID=id-Cj0650-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0650
gi|15791399|ref|NC_002163.1|	EMBL	gene	610803	611297	.	+	.	ID=gene-Cj0651;Name=Cj0651;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0651
gi|15791399|ref|NC_002163.1|	EMBL	CDS	610803	611297	.	+	0	ID=cds-CAL34796.1;Parent=gene-Cj0651;Dbxref=EnsemblGenomes-Gn:Cj0651,EnsemblGenomes-Tr:CAL34796,UniProtKB/TrEMBL:Q0PAL7,NCBI_GP:CAL34796.1;Name=CAL34796.1;Note=Original (2000) note: Cj0651%2C possible integral membrane protein%2C len: 164 aa%3B no Hp match%3B~Updated (2006) note: Five probable transmembrane helices predicted by TMHMM2.0 identified within CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0651;product=putative integral membrane protein;protein_id=CAL34796.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	610836	610889	.	+	.	ID=id-Cj0651;Note=5 probable transmembrane helices predicted for Cj0651 by TMHMM2.0 at aa 12-29%2C 33-52%2C 65-96%2C 111-133 and 140-159;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0651;part=1/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	610899	610958	.	+	.	ID=id-Cj0651;Note=5 probable transmembrane helices predicted for Cj0651 by TMHMM2.0 at aa 12-29%2C 33-52%2C 65-96%2C 111-133 and 140-159;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0651;part=2/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	610995	611090	.	+	.	ID=id-Cj0651;Note=5 probable transmembrane helices predicted for Cj0651 by TMHMM2.0 at aa 12-29%2C 33-52%2C 65-96%2C 111-133 and 140-159;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0651;part=3/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	611133	611201	.	+	.	ID=id-Cj0651;Note=5 probable transmembrane helices predicted for Cj0651 by TMHMM2.0 at aa 12-29%2C 33-52%2C 65-96%2C 111-133 and 140-159;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0651;part=4/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	611220	611279	.	+	.	ID=id-Cj0651;Note=5 probable transmembrane helices predicted for Cj0651 by TMHMM2.0 at aa 12-29%2C 33-52%2C 65-96%2C 111-133 and 140-159;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0651;part=5/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	611298	613103	.	+	.	ID=gene-Cj0652;Name=pbpC;gbkey=Gene;gene=pbpC;gene_biotype=protein_coding;locus_tag=Cj0652
gi|15791399|ref|NC_002163.1|	EMBL	CDS	611298	613103	.	+	0	ID=cds-CAL34797.1;Parent=gene-Cj0652;Dbxref=EnsemblGenomes-Gn:Cj0652,EnsemblGenomes-Tr:CAL34797,GOA:Q0PAL6,InterPro:IPR001460,InterPro:IPR005311,InterPro:IPR012338,InterPro:IPR017790,UniProtKB/TrEMBL:Q0PAL6,NCBI_GP:CAL34797.1;Name=CAL34797.1;Note=Original (2000) note: Cj0652%2C pbpC%2C probable penicillin-binding protein%2C len: 601 aa%3B similar to many e.g. PBP2_ECOLI penicillin-binding protein 2 (PBP-2) (633 aa)%2C fasta scores%3B opt: 954 z-score: 1474.4 E(): 0%2C 32.7%25 identity in 609 aa overlap. 43.5%25 identity to HP1565. Contains Pfam match to entry PF00905 Transpeptidase%2CPenicillin binding protein transpeptidase domain%3B~Updated (2006) note: Pfam domain PF03717 Penicillin-binding Protein dimerisation domain was identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:9045804;gbkey=CDS;gene=pbpC;inference=protein motif:Pfam:PF03717;locus_tag=Cj0652;product=penicillin-binding protein;protein_id=CAL34797.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	611310	611369	.	+	.	ID=id-Cj0652;Note=1 probable transmembrane helix predicted for Cj0652 by TMHMM2.0 at aa 5-24;gbkey=misc_feature;gene=pbpC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0652
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	611430	611966	.	+	.	ID=id-Cj0652-2;Note=HMMPfam hit to PF03717%2C Penicillin-binding Protein dimerisatio%2C score 1.9e-53;gbkey=misc_feature;gene=pbpC;inference=protein motif:Pfam:PF03717;locus_tag=Cj0652
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	612054	613085	.	+	.	ID=id-Cj0652-3;Note=HMMPfam hit to PF00905%2C Penicillin binding protein transpeptid%2C score 1.5e-64;gbkey=misc_feature;gene=pbpC;inference=protein motif:Pfam:PF00905;locus_tag=Cj0652
gi|15791399|ref|NC_002163.1|	EMBL	gene	613224	615014	.	-	.	ID=gene-Cj0653c;Name=Cj0653c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0653c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	613224	615014	.	-	0	ID=cds-CAL34798.1;Parent=gene-Cj0653c;Dbxref=EnsemblGenomes-Gn:Cj0653c,EnsemblGenomes-Tr:CAL34798,GOA:Q0PAL5,InterPro:IPR000587,InterPro:IPR000994,InterPro:IPR028980,InterPro:IPR029149,UniProtKB/TrEMBL:Q0PAL5,NCBI_GP:CAL34798.1;Name=CAL34798.1;Note=Original (2000) note: Cj0653c%2C probable aminopeptidase%2C len: 596 aa%3B similar to e.g. TR:O54975 (EMBL:AF038591) rattus norvegicus cytoplasmic aminopeptidase P (623 aa)%2C fasta scores%3B opt: 763 z-score: 1470.5 E(): 0%2C 36.8%25 identity in 612 aa overlap%2C and TR:O51094 (EMBL:AE001119) Borrelia burgdorferi putative peptidase BB0067 (592 aa)%2C fasta scores%3B opt: 1234 z-score: 1316.7 E(): 0%2C 41.1%25 identity in 609 aa overlap. 25.8%25 identity to HP1037. Contains Pfam match to entry PF00557 pep_M24%2C metallopeptidase family M24%3B~Updated (2006) note: No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification -Degradation of macromolecules - Proteins%2C peptides and glycopeptides;gbkey=CDS;inference=protein motif:Pfam:PF00557;locus_tag=Cj0653c;product=putative aminopeptidase;protein_id=CAL34798.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	613434	614093	.	-	.	ID=id-Cj0653c;Note=HMMPfam hit to PF00557%2C metallopeptidase family M24%2C score 3.5e-09;gbkey=misc_feature;inference=protein motif:Pfam:PF00557;locus_tag=Cj0653c
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	615014	616485	.	-	.	ID=gene-Cj0654c;Name=Cj0654c;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Cj0654c;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	616267	616485	.	-	0	ID=cds-Cj0654c;Parent=gene-Cj0654c;Note=Original (2000) note: Cj0654c%2C probable transmembrane transport protein pseudogene%2C len: 1433 bp%3B similar to members of the PTR2 family of transporters. No apparent Hp ortholog. Contains PS01023 PTR2 family proton/oligopeptide symporters signature 2%3B~Updated (2006) note: Pfam domain PF00854 POT family identified within CDS. Also%2C twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Thus%2Cputative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;product=pseudogene (putative transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	616022	616267	.	-	0	ID=cds-Cj0654c;Parent=gene-Cj0654c;Note=Original (2000) note: Cj0654c%2C probable transmembrane transport protein pseudogene%2C len: 1433 bp%3B similar to members of the PTR2 family of transporters. No apparent Hp ortholog. Contains PS01023 PTR2 family proton/oligopeptide symporters signature 2%3B~Updated (2006) note: Pfam domain PF00854 POT family identified within CDS. Also%2C twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Thus%2Cputative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;product=pseudogene (putative transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	615768	616022	.	-	0	ID=cds-Cj0654c;Parent=gene-Cj0654c;Note=Original (2000) note: Cj0654c%2C probable transmembrane transport protein pseudogene%2C len: 1433 bp%3B similar to members of the PTR2 family of transporters. No apparent Hp ortholog. Contains PS01023 PTR2 family proton/oligopeptide symporters signature 2%3B~Updated (2006) note: Pfam domain PF00854 POT family identified within CDS. Also%2C twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Thus%2Cputative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;product=pseudogene (putative transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	615511	615774	.	-	0	ID=cds-Cj0654c;Parent=gene-Cj0654c;Note=Original (2000) note: Cj0654c%2C probable transmembrane transport protein pseudogene%2C len: 1433 bp%3B similar to members of the PTR2 family of transporters. No apparent Hp ortholog. Contains PS01023 PTR2 family proton/oligopeptide symporters signature 2%3B~Updated (2006) note: Pfam domain PF00854 POT family identified within CDS. Also%2C twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Thus%2Cputative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;product=pseudogene (putative transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	615014	615511	.	-	0	ID=cds-Cj0654c;Parent=gene-Cj0654c;Note=Original (2000) note: Cj0654c%2C probable transmembrane transport protein pseudogene%2C len: 1433 bp%3B similar to members of the PTR2 family of transporters. No apparent Hp ortholog. Contains PS01023 PTR2 family proton/oligopeptide symporters signature 2%3B~Updated (2006) note: Pfam domain PF00854 POT family identified within CDS. Also%2C twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Thus%2Cputative added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;product=pseudogene (putative transmembrane transport protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	615062	615130	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=1/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	615158	615217	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=2/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	615254	615322	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=3/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	615380	615448	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=4/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	615607	615666	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=5/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	615694	615750	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=6/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	615777	615845	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=7/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	615924	615992	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=8/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	616011	616022	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=9/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	616022	616078	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=10/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	616121	616189	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=11/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	616202	616261	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=12/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	616288	616356	.	-	.	ID=id-Cj0654c;Note=12 probable transmembrane helices predicted for Cj0654c by TMHMM2.0 at aa 44-66%2C 76-95%2C 100-122%2C 137-159%2C166-188%2C 215-237%2C 249-267%2C 277-296%2C 350-372%2C 392-414%2C427-446 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0654c;part=13/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	615179	615511	.	-	.	ID=id-Cj0654c-2;Note=HMMPfam hit to PF00854%2C POT family%2C score 8e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00854;locus_tag=Cj0654c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	615511	615774	.	-	.	ID=id-Cj0654c-2;Note=HMMPfam hit to PF00854%2C POT family%2C score 8e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00854;locus_tag=Cj0654c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	615768	616022	.	-	.	ID=id-Cj0654c-2;Note=HMMPfam hit to PF00854%2C POT family%2C score 8e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00854;locus_tag=Cj0654c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	616022	616267	.	-	.	ID=id-Cj0654c-2;Note=HMMPfam hit to PF00854%2C POT family%2C score 8e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00854;locus_tag=Cj0654c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	616267	616269	.	-	.	ID=id-Cj0654c-2;Note=HMMPfam hit to PF00854%2C POT family%2C score 8e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00854;locus_tag=Cj0654c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	gene	616572	617120	.	-	.	ID=gene-Cj0659c;Name=Cj0659c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0659c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	616572	617120	.	-	0	ID=cds-CAL34800.1;Parent=gene-Cj0659c;Dbxref=EnsemblGenomes-Gn:Cj0659c,EnsemblGenomes-Tr:CAL34800,InterPro:IPR014717,UniProtKB/TrEMBL:Q0PAL4,NCBI_GP:CAL34800.1;Name=CAL34800.1;Note=Original (2000) note: Cj0659c%2C possible periplasmic protein%2C len: 182 aa%3B no Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0 identified within CDS. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0659c;product=putative periplasmic protein;protein_id=CAL34800.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	617004	617072	.	-	.	ID=id-Cj0659c;Note=1 probable transmembrane helix predicted for Cj0659c by TMHMM2.0 at aa 17-39;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0659c
gi|15791399|ref|NC_002163.1|	EMBL	gene	617113	618219	.	-	.	ID=gene-Cj0660c;Name=Cj0660c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0660c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	617113	618219	.	-	0	ID=cds-CAL34801.1;Parent=gene-Cj0660c;Dbxref=EnsemblGenomes-Gn:Cj0660c,EnsemblGenomes-Tr:CAL34801,GOA:Q0PAL3,UniProtKB/TrEMBL:Q0PAL3,NCBI_GP:CAL34801.1;Name=CAL34801.1;Note=Original (2000) note: Cj0660c%2C possible transmembrane protein%2C len: 368 aa%3B no Hp match. Contains a possible transmembrane domain around aa 220%3B~Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0 identified within CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0660c;product=putative transmembrane protein;protein_id=CAL34801.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	617533	617601	.	-	.	ID=id-Cj0660c;Note=1 probable transmembrane helix predicted for Cj0660c by TMHMM2.0 at aa 207-229;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0660c
gi|15791399|ref|NC_002163.1|	EMBL	gene	618206	619081	.	-	.	ID=gene-Cj0661c;Name=era;gbkey=Gene;gene=era;gene_biotype=protein_coding;locus_tag=Cj0661c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	618206	619081	.	-	0	ID=cds-CAL34802.1;Parent=gene-Cj0661c;Dbxref=EnsemblGenomes-Gn:Cj0661c,EnsemblGenomes-Tr:CAL34802,GOA:Q9PHL1,InterPro:IPR004044,InterPro:IPR005225,InterPro:IPR005662,InterPro:IPR006073,InterPro:IPR009019,InterPro:IPR015946,InterPro:IPR027417,NCBI_GP:CAL34802.1;Name=CAL34802.1;Note=Original (2000) note: Cj0661c%2C era%2C GTP-binding protein ERA homolog%2C len: 291 aa%3B similar to many e.g. ERA_BACSU GTP-binding protein ERA homolog (301 aa)%2C fasta scores%3B opt: 540 z-score: 562.4 E(): 4.9e-24%2C 35.0%25 identity in 280 aa overlap. 43.1%25 identity to HP0517. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domains PF07650 KH domain and PF01926 GTPase of unknown function were identified within CDS. Further support given to product function. Functional classification - Misc%3B~PMID:12399511;gbkey=CDS;gene=era;inference=protein motif:Prosite:PS00017;locus_tag=Cj0661c;product=GTP-binding protein Era homolog;protein_id=CAL34802.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	618218	618412	.	-	.	ID=id-Cj0661c;Note=HMMPfam hit to PF07650%2C KH domain%2C score 1.1e-22;gbkey=misc_feature;gene=era;inference=protein motif:Pfam:PF07650;locus_tag=Cj0661c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	618725	619072	.	-	.	ID=id-Cj0661c-2;Note=HMMPfam hit to PF01926%2C GTPase of unknown function%2Cscore 1.5e-31;gbkey=misc_feature;gene=era;inference=protein motif:Pfam:PF01926;locus_tag=Cj0661c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	619031	619054	.	-	.	ID=id-Cj0661c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=era;inference=protein motif:Prosite:PS00017;locus_tag=Cj0661c
gi|15791399|ref|NC_002163.1|	EMBL	gene	619078	620397	.	-	.	ID=gene-Cj0662c;Name=hslU;gbkey=Gene;gene=hslU;gene_biotype=protein_coding;locus_tag=Cj0662c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	619078	620397	.	-	0	ID=cds-CAL34803.1;Parent=gene-Cj0662c;Dbxref=EnsemblGenomes-Gn:Cj0662c,EnsemblGenomes-Tr:CAL34803,GOA:Q9PHL0,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004491,InterPro:IPR019489,InterPro:IPR027417,NCBI_GP:CAL34803.1;Name=CAL34803.1;Note=Original (2000) note: Cj0662c%2C hslU%2C probable heat shock protein%2C len: 439 aa%3B highly similar to many e.g. HSLU_ECOLI heat shock protein HSLU (443 aa)%2C fasta scores%3B opt: 1373 z-score: 1683.1 E(): 0%2C 48.6%25 identity in 442 aa overlap. 62.3%25 identity to HP0516. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domains PF00004%2C PF0772 and PF07728 all ATPase family associated with various cellular activities (AAA) were identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative removed from product function. Characterisation work has been updated. Thus%2C product function also updated. Functional classification - Chaperones%2Cchaperonins%2C heat shock%3B~PMID:10693812%2C PMID:9722513;gbkey=CDS;gene=hslU;inference=protein motif:Prosite:PS00017;locus_tag=Cj0662c;product=ATP-dependent Hsl protease ATP-binding subunit;protein_id=CAL34803.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	619243	620247	.	-	.	ID=id-Cj0662c;Note=HMMPfam hit to PF00004%2C ATPase family associated with various cellul%2C score 1.5e-12;gbkey=misc_feature;gene=hslU;inference=protein motif:Pfam:PF00004;locus_tag=Cj0662c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	619423	620256	.	-	.	ID=id-Cj0662c-2;Note=HMMPfam hit to PF07724%2C ATPase family associated with various cellul%2C score 4.8e-44;gbkey=misc_feature;gene=hslU;inference=protein motif:Pfam:PF07724;locus_tag=Cj0662c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	620209	620232	.	-	.	ID=id-Cj0662c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=hslU;inference=protein motif:Prosite:PS00017;locus_tag=Cj0662c
gi|15791399|ref|NC_002163.1|	EMBL	gene	620394	620936	.	-	.	ID=gene-Cj0663c;Name=hslV;gbkey=Gene;gene=hslV;gene_biotype=protein_coding;locus_tag=Cj0663c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	620394	620936	.	-	0	ID=cds-CAL34804.1;Parent=gene-Cj0663c;Dbxref=EnsemblGenomes-Gn:Cj0663c,EnsemblGenomes-Tr:CAL34804,GOA:Q9PHK9,InterPro:IPR001353,InterPro:IPR022281,InterPro:IPR023333,InterPro:IPR029055,NCBI_GP:CAL34804.1;Name=CAL34804.1;Note=Original (2000) note: Cj0663c%2C hslV%2C probable heat shock protein%2C len: 180 aa%3B highly similar to many e.g. HSLV_ECOLI heat shock protein HSLV (EC 3.4.99.-) (175 aa)%2Cfasta scores%3B opt: 582 z-score: 794.3 E(): 0%2C 53.7%25 identity in 164 aa overlap. 67.6%25 identity HP0515%3B~Updated (2006) note: Pfam domain PF00227 Proteasome A-type and B-type was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative removed from product function. Characterisation work has been updated. Thus%2C product function also updated. Functional classification - Chaperones%2C chaperonins%2C heat shock%3B~PMID:10693812%2C PMID:9177170;gbkey=CDS;gene=hslV;inference=protein motif:Pfam:PF00227;locus_tag=Cj0663c;product=ATP-dependent protease HslV;protein_id=CAL34804.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	620409	620936	.	-	.	ID=id-Cj0663c;Note=HMMPfam hit to PF00227%2C Proteasome A-type and B-type%2C score 1.2e-44;gbkey=misc_feature;gene=hslV;inference=protein motif:Pfam:PF00227;locus_tag=Cj0663c
gi|15791399|ref|NC_002163.1|	EMBL	gene	620936	621379	.	-	.	ID=gene-Cj0664c;Name=rplI;gbkey=Gene;gene=rplI;gene_biotype=protein_coding;locus_tag=Cj0664c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	620936	621379	.	-	0	ID=cds-CAL34805.1;Parent=gene-Cj0664c;Dbxref=EnsemblGenomes-Gn:Cj0664c,EnsemblGenomes-Tr:CAL34805,GOA:Q9PHK8,InterPro:IPR000244,InterPro:IPR009027,InterPro:IPR020069,InterPro:IPR020070,InterPro:IPR020594,NCBI_GP:CAL34805.1;Name=CAL34805.1;Note=Original (2000) note: Cj0664c%2C rplI%2C 50S ribosomal protein L9%2C len: 147 aa%3B highly similar to many e.g. RL9_BACSU 50S ribosomal protein L9 (149 aa)%2C fasta scores%3B opt: 353 z-score: 545.5 E(): 4.3e-23%2C 39.9%25 identity in 148 aa overlap. 55.0%25 identity to HP0514. Contains PS00651 Ribosomal protein L9 signature and Pfam match to entry PF01281 Ribosomal_L9%2C Ribosomal protein L9%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:10756104;gbkey=CDS;gene=rplI;inference=protein motif:Prosite:PS00651;locus_tag=Cj0664c;product=50S ribosomal protein L9;protein_id=CAL34805.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	620939	621196	.	-	.	ID=id-Cj0664c;Note=HMMPfam hit to PF03948%2C Ribosomal protein L9%2CC-terminal domai%2C score 3.7e-20;gbkey=misc_feature;gene=rplI;inference=protein motif:Pfam:PF03948;locus_tag=Cj0664c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	621212	621379	.	-	.	ID=id-Cj0664c-2;Note=HMMPfam hit to PF01281%2C Ribosomal protein L9%2CN-terminal domai%2C score 2.9e-21;gbkey=misc_feature;gene=rplI;inference=protein motif:Pfam:PF01281;locus_tag=Cj0664c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	621260	621343	.	-	.	ID=id-Cj0664c-3;Note=PS00651 Ribosomal protein L9 signature;gbkey=misc_feature;gene=rplI;inference=protein motif:Prosite:PS00651;locus_tag=Cj0664c
gi|15791399|ref|NC_002163.1|	EMBL	gene	621392	622612	.	-	.	ID=gene-Cj0665c;Name=argG;gbkey=Gene;gene=argG;gene_biotype=protein_coding;locus_tag=Cj0665c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	621392	622612	.	-	0	ID=cds-CAL34806.1;Parent=gene-Cj0665c;Dbxref=EnsemblGenomes-Gn:Cj0665c,EnsemblGenomes-Tr:CAL34806,GOA:Q9PHK7,InterPro:IPR001518,InterPro:IPR014729,InterPro:IPR018223,InterPro:IPR023434,InterPro:IPR024074,PDB:4NZP,NCBI_GP:CAL34806.1;Name=CAL34806.1;Note=Original (2000) note: Cj0665c%2C argG%2C probable argininosuccinate synthase%2C len: 406 aa%3B highly similar to many e.g. ASSY_RAT argininosuccinate synthase (EC 6.3.4.5) (412 aa)%2C fasta scores%3B opt: 1191 z-score: 1564.9 E(): 0%2C48.0%25 identity in 398 aa overlap%2C and ASSY_METJA (395 aa)%2Cfasta scores%3B opt: 1080 z-score: 1260.3 E(): 0%2C 45.8%25 identity in 391 aa overlap. No Hp match. Contains PS00564 and PS00565 Argininosuccinate synthase signatures 1 and 2%2Cand Pfam match to entry PF00764 Arginosuc_synth%2CArginosuccinate synthase%3B~Updated (2006) note: Some characterisation work within Escherichia coli and Rattus norvegicus (Rat). Appropriate motifs present. Putative not added to product function. Functional classification - Amino acid biosynthesis - Glutamate family%3B~PMID:2123815%2C PMID:3174461;gbkey=CDS;gene=argG;inference=protein motif:Prosite:PS00565;locus_tag=Cj0665c;product=argininosuccinate synthase;protein_id=CAL34806.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	621407	622588	.	-	.	ID=id-Cj0665c;Note=HMMPfam hit to PF00764%2C Arginosuccinate synthase%2Cscore 1.7e-193;gbkey=misc_feature;gene=argG;inference=protein motif:Pfam:PF00764;locus_tag=Cj0665c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	622217	622252	.	-	.	ID=id-Cj0665c-2;Note=PS00565 Argininosuccinate synthase signature 2;gbkey=misc_feature;gene=argG;inference=protein motif:Prosite:PS00565;locus_tag=Cj0665c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	622556	622582	.	-	.	ID=id-Cj0665c-3;Note=PS00564 Argininosuccinate synthase signature 1;gbkey=misc_feature;gene=argG;inference=protein motif:Prosite:PS00564;locus_tag=Cj0665c
gi|15791399|ref|NC_002163.1|	EMBL	gene	622768	623013	.	+	.	ID=gene-Cj0667;Name=Cj0667;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0667
gi|15791399|ref|NC_002163.1|	EMBL	CDS	622768	623013	.	+	0	ID=cds-CAL34807.1;Parent=gene-Cj0667;Dbxref=EnsemblGenomes-Gn:Cj0667,EnsemblGenomes-Tr:CAL34807,GOA:Q0PAK7,InterPro:IPR002942,InterPro:IPR025490,UniProtKB/TrEMBL:Q0PAK7,NCBI_GP:CAL34807.1;Name=CAL34807.1;Note=Original (2000) note: Cj0667%2C unknown%2C len: 81 aa%3B similar to many hypothetical proteins e.g. YABO_BACSU (86 aa)%2C fasta scores%3B opt: 149 z-score: 259.2 E(): 3.8e-07%2C35.4%25 identity in 79 aa overlap. 43.6%25 identity to HP1423%3B~Updated (2006) note: Pfam domain PF01479 S4 domain was identified within CDS. The S4 domain probably mediates binding to RNA. Product modified to more specific family member due to motif match. No specific characterisation has been carried out. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF01479;locus_tag=Cj0667;product=putative S4 domain protein;protein_id=CAL34807.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	622768	622908	.	+	.	ID=id-Cj0667;Note=HMMPfam hit to PF01479%2C S4 domain%2C score 4.5e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF01479;locus_tag=Cj0667
gi|15791399|ref|NC_002163.1|	EMBL	gene	623010	623417	.	+	.	ID=gene-Cj0668;Name=Cj0668;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0668
gi|15791399|ref|NC_002163.1|	EMBL	CDS	623010	623417	.	+	0	ID=cds-CAL34808.1;Parent=gene-Cj0668;Dbxref=EnsemblGenomes-Gn:Cj0668,EnsemblGenomes-Tr:CAL34808,GOA:Q0PAK6,InterPro:IPR003442,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAK6,NCBI_GP:CAL34808.1;Name=CAL34808.1;Note=Original (2000) note: Cj0668%2C probable ATP/GTP-binding protein%2C len: 135 aa%3B similar to hypothetical proteins e.g. YJEE_ECOLI (153 aa)%2C fasta scores%3B opt: 164 z-score: 205.3 E(): 0.00039%2C 33.8%25 identity in 80 aa overlap. 44.2%25 identity to HP0716. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF02367 Uncharacterised P-loop hydrolase UPF0079 was identified within CDS. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0668;product=putative ATP/GTP-binding protein;protein_id=CAL34808.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	623049	623402	.	+	.	ID=id-Cj0668;Note=HMMPfam hit to PF02367%2C Uncharacterised P-loop hydrolase UPF0079%2C score 1e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF02367;locus_tag=Cj0668
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	623091	623114	.	+	.	ID=id-Cj0668-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0668
gi|15791399|ref|NC_002163.1|	EMBL	gene	623410	624138	.	+	.	ID=gene-Cj0669;Name=Cj0669;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0669
gi|15791399|ref|NC_002163.1|	EMBL	CDS	623410	624138	.	+	0	ID=cds-CAL34809.1;Parent=gene-Cj0669;Dbxref=EnsemblGenomes-Gn:Cj0669,EnsemblGenomes-Tr:CAL34809,GOA:Q0PAK5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAK5,NCBI_GP:CAL34809.1;Name=CAL34809.1;Note=Original (2000) note: Cj0669%2C probable ABC-transporter ATP-binding protein%2C len: 242 aa%3B highly similar to many e.g. YHBG_ECOLI probable ABC transporter ATP-binding protein (240 aa)%2C fasta scores%3B opt: 840 z-score: 1144.2 E(): 0%2C 54.2%25 identity in 236 aa overlap. 65.8%25 identity to HP0715. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Appropriate motifs also present. Putative not added to product function. Functional classification -Transport/binding proteins - Other%3B~PMID:16079137;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0669;product=ABC-transporter ATP-binding protein;protein_id=CAL34809.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	623494	624045	.	+	.	ID=id-Cj0669;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 8.9e-62;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj0669
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	623515	623538	.	+	.	ID=id-Cj0669-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0669
gi|15791399|ref|NC_002163.1|	EMBL	gene	624138	625388	.	+	.	ID=gene-Cj0670;Name=rpoN;gbkey=Gene;gene=rpoN;gene_biotype=protein_coding;locus_tag=Cj0670
gi|15791399|ref|NC_002163.1|	EMBL	CDS	624138	625388	.	+	0	ID=cds-CAL34810.1;Parent=gene-Cj0670;Dbxref=EnsemblGenomes-Gn:Cj0670,EnsemblGenomes-Tr:CAL34810,GOA:Q0PAK4,InterPro:IPR000394,InterPro:IPR007046,InterPro:IPR007634,UniProtKB/TrEMBL:Q0PAK4,NCBI_GP:CAL34810.1;Name=CAL34810.1;Note=Original (2000) note: Cj0670%2C rpoN%2C probable RNA polymerase sigma-54 factor%2C len 416 aa%3B similar to many e.g. RP54_BACSU RNA polymerase sigma-54 factor (436 aa)%2Cfasta scores%3B opt: 357 z-score: 603.0 E(): 2.7e-26%2C 28.9%25 identity in 443 aa overlap%2C and RP54_ECOLI (477 aa)%2C fasta scores%3B opt: 365 z-score: 483.2 E(): 1.3e-19%2C 28.8%25 identity in 459 aa overlap. 47.4%25 identity to HP0714. Contains PS00718 Sigma-54 factors family signature 2%2C Pfam match to entry PF00309 Sigma54_factors%2C and helix-turn-helix motif at aa 303-324 (Score 1227%3B +3.37 SD)%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Putative not added to product function. Functional classification - Broad regulatory functions%3B~PMID:11292815;gbkey=CDS;gene=rpoN;inference=protein motif:Prosite:PS00718;locus_tag=Cj0670;product=RNA polymerase sigma-54 factor;protein_id=CAL34810.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	624141	624287	.	+	.	ID=id-Cj0670;Note=HMMPfam hit to PF00309%2C Sigma-54 factor%2C Activator interacting do%2C score 1.3e-15;gbkey=misc_feature;gene=rpoN;inference=protein motif:Pfam:PF00309;locus_tag=Cj0670
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	624357	624893	.	+	.	ID=id-Cj0670-2;Note=HMMPfam hit to PF04963%2C Sigma-54 factor%2C core binding domain%2C score 3.6e-06;gbkey=misc_feature;gene=rpoN;inference=protein motif:Pfam:PF04963;locus_tag=Cj0670
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	624897	625367	.	+	.	ID=id-Cj0670-3;Note=HMMPfam hit to PF04552%2C Sigma-54%2C DNA binding domain%2C score 3.7e-83;gbkey=misc_feature;gene=rpoN;inference=protein motif:Pfam:PF04552;locus_tag=Cj0670
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	625305	625328	.	+	.	ID=id-Cj0670-4;Note=PS00718 Sigma-54 factors family signature 2;gbkey=misc_feature;gene=rpoN;inference=protein motif:Prosite:PS00718;locus_tag=Cj0670
gi|15791399|ref|NC_002163.1|	EMBL	gene	625552	626976	.	+	.	ID=gene-Cj0671;Name=dcuB;gbkey=Gene;gene=dcuB;gene_biotype=protein_coding;locus_tag=Cj0671
gi|15791399|ref|NC_002163.1|	EMBL	CDS	625552	626976	.	+	0	ID=cds-CAL34811.1;Parent=gene-Cj0671;Dbxref=EnsemblGenomes-Gn:Cj0671,EnsemblGenomes-Tr:CAL34811,GOA:Q0PAK3,InterPro:IPR004668,UniProtKB/TrEMBL:Q0PAK3,NCBI_GP:CAL34811.1;Name=CAL34811.1;Note=Original (2000) note: Cj0671%2C dcuB%2C probable anaerobic C4-dicarboxylate transporter%2C len: 474 aa%3B highly similar to e.g. DCUB_ECOLI anaerobic C4-dicarboxylate transporter (446 aa)opt: 1280 z-score: 2918.6 E(): 0%2C 69.1%25 identity in 466 aa overlap. No Hp ortholog. Also similar to Cj0088%2C dcuA (37.0%25 identity in 465 aa overlap)%3B~Updated (2006) note: Pfam domain PF03605 Anaerobic C4-dicarboxylate membrane transport protein was identified within CDS. Twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:8131924%2C PMID:9852003;gbkey=CDS;gene=dcuB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0671;product=anaerobic C4-dicarboxylate transporter;protein_id=CAL34811.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	625579	625635	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=1/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	625648	625707	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=2/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	625735	625803	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=3/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	625864	625932	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=4/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	625990	626058	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=5/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	626095	626163	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=6/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	626290	626358	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=7/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	626431	626499	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=8/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	626542	626610	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=9/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	626671	626739	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=10/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	626767	626835	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=11/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	626896	626964	.	+	.	ID=id-Cj0671;Note=12 probable transmembrane helices predicted for Cj0671 by TMHMM2.0 at aa 10-28%2C 33-52%2C 62-84%2C 105-127%2C147-169%2C 182-204%2C 247-269%2C 294-316%2C 331-353%2C 374-396%2C406-428 and 449-471;gbkey=misc_feature;gene=dcuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0671;part=12/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	625597	626763	.	+	.	ID=id-Cj0671-2;Note=HMMPfam hit to PF03605%2C Anaerobic c4-dicarboxylate membrane transpo%2C score 4.2e-254;gbkey=misc_feature;gene=dcuB;inference=protein motif:Pfam:PF03605;locus_tag=Cj0671
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	626761	626793	.	+	.	ID=id-Cj0671-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=dcuB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0671
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	626902	626934	.	+	.	ID=id-Cj0671-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=dcuB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0671
gi|15791399|ref|NC_002163.1|	EMBL	gene	627118	627306	.	+	.	ID=gene-Cj0672;Name=Cj0672;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0672
gi|15791399|ref|NC_002163.1|	EMBL	CDS	627118	627306	.	+	0	ID=cds-CAL34812.1;Parent=gene-Cj0672;Dbxref=EnsemblGenomes-Gn:Cj0672,EnsemblGenomes-Tr:CAL34812,GOA:Q0PAK2,InterPro:IPR011726,UniProtKB/TrEMBL:Q0PAK2,NCBI_GP:CAL34812.1;Name=CAL34812.1;Note=Original (2000) note: Cj0672%2C possible periplasmic protein%2C len: 62 aa%3B no Hp match. Contains possible N-terminal signal sequence and second hydrophobic domain%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0672;product=putative periplasmic protein;protein_id=CAL34812.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	627145	627213	.	+	.	ID=id-Cj0672;Note=2 probable transmembrane helices predicted for Cj0672 by TMHMM2.0 at aa 10-32 and 39-58;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0672;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	627232	627291	.	+	.	ID=id-Cj0672;Note=2 probable transmembrane helices predicted for Cj0672 by TMHMM2.0 at aa 10-32 and 39-58;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0672;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	627316	628126	.	+	.	ID=gene-Cj0676;Name=kdpA;gbkey=Gene;gene=kdpA;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0676;part=1/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	628129	628972	.	+	.	ID=gene-Cj0676;Name=kdpA;gbkey=Gene;gene=kdpA;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0676;part=2/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	627316	627776	.	+	0	ID=cds-Cj0676;Parent=gene-Cj0676;Note=Original (2000) note: Cj0676%2C kdpA%2C probable potassium-transporting ATPase A chain pseudogene%2C len: 1744 bp%3B highly similar to e.g. ATKA_ECOLI potassium-transporting ATPase A chain (EC 3.6.1.36) (557 aa). No hp match. Note thay kdpB (Cj0677) is intact%2C while kdpC (Cj0678) is a pseudogene%3B~Updated (2006) note: Pfam domain PF03814 Potassium-transporting ATPase A subunit identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not used within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Cations%3B~PMID:6146979%2C PMID:15919996;gbkey=CDS;gene=kdpA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0676;product=pseudogene (potassium-transporting ATPase A chain);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	627776	628126	.	+	1	ID=cds-Cj0676;Parent=gene-Cj0676;Note=Original (2000) note: Cj0676%2C kdpA%2C probable potassium-transporting ATPase A chain pseudogene%2C len: 1744 bp%3B highly similar to e.g. ATKA_ECOLI potassium-transporting ATPase A chain (EC 3.6.1.36) (557 aa). No hp match. Note thay kdpB (Cj0677) is intact%2C while kdpC (Cj0678) is a pseudogene%3B~Updated (2006) note: Pfam domain PF03814 Potassium-transporting ATPase A subunit identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not used within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Cations%3B~PMID:6146979%2C PMID:15919996;gbkey=CDS;gene=kdpA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0676;product=pseudogene (potassium-transporting ATPase A chain);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	628129	628972	.	+	1	ID=cds-Cj0676;Parent=gene-Cj0676;Note=Original (2000) note: Cj0676%2C kdpA%2C probable potassium-transporting ATPase A chain pseudogene%2C len: 1744 bp%3B highly similar to e.g. ATKA_ECOLI potassium-transporting ATPase A chain (EC 3.6.1.36) (557 aa). No hp match. Note thay kdpB (Cj0677) is intact%2C while kdpC (Cj0678) is a pseudogene%3B~Updated (2006) note: Pfam domain PF03814 Potassium-transporting ATPase A subunit identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not used within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Cations%3B~PMID:6146979%2C PMID:15919996;gbkey=CDS;gene=kdpA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0676;product=pseudogene (potassium-transporting ATPase A chain);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	627319	627776	.	+	.	ID=id-Cj0676;Note=HMMPfam hit to PF03814%2C Potassium-transporting ATPase A subunit%2C score 4e-243;gbkey=misc_feature;gene=kdpA;inference=protein motif:Pfam:PF03814;is_ordered=true;locus_tag=Cj0676;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	627776	628126	.	+	.	ID=id-Cj0676;Note=HMMPfam hit to PF03814%2C Potassium-transporting ATPase A subunit%2C score 4e-243;gbkey=misc_feature;gene=kdpA;inference=protein motif:Pfam:PF03814;is_ordered=true;locus_tag=Cj0676;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	628129	628954	.	+	.	ID=id-Cj0676;Note=HMMPfam hit to PF03814%2C Potassium-transporting ATPase A subunit%2C score 4e-243;gbkey=misc_feature;gene=kdpA;inference=protein motif:Pfam:PF03814;is_ordered=true;locus_tag=Cj0676;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	627325	627384	.	+	.	ID=id-Cj0676-2;Note=10 probable transmembrane helices predicted for Cj0676 by TMHMM2.0 at aa 4-23%2C 60-82%2C 128-150%2C 163-185%2C242-264%2C 281-300%2C 377-399%2C 416-438%2C 484-506 and 523-545;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0676;part=1/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	627493	627561	.	+	.	ID=id-Cj0676-2;Note=10 probable transmembrane helices predicted for Cj0676 by TMHMM2.0 at aa 4-23%2C 60-82%2C 128-150%2C 163-185%2C242-264%2C 281-300%2C 377-399%2C 416-438%2C 484-506 and 523-545;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0676;part=2/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	627697	627765	.	+	.	ID=id-Cj0676-2;Note=10 probable transmembrane helices predicted for Cj0676 by TMHMM2.0 at aa 4-23%2C 60-82%2C 128-150%2C 163-185%2C242-264%2C 281-300%2C 377-399%2C 416-438%2C 484-506 and 523-545;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0676;part=3/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	627801	627869	.	+	.	ID=id-Cj0676-2;Note=10 probable transmembrane helices predicted for Cj0676 by TMHMM2.0 at aa 4-23%2C 60-82%2C 128-150%2C 163-185%2C242-264%2C 281-300%2C 377-399%2C 416-438%2C 484-506 and 523-545;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0676;part=4/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	628038	628106	.	+	.	ID=id-Cj0676-2;Note=10 probable transmembrane helices predicted for Cj0676 by TMHMM2.0 at aa 4-23%2C 60-82%2C 128-150%2C 163-185%2C242-264%2C 281-300%2C 377-399%2C 416-438%2C 484-506 and 523-545;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0676;part=5/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	628157	628216	.	+	.	ID=id-Cj0676-2;Note=10 probable transmembrane helices predicted for Cj0676 by TMHMM2.0 at aa 4-23%2C 60-82%2C 128-150%2C 163-185%2C242-264%2C 281-300%2C 377-399%2C 416-438%2C 484-506 and 523-545;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0676;part=6/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	628445	628513	.	+	.	ID=id-Cj0676-2;Note=10 probable transmembrane helices predicted for Cj0676 by TMHMM2.0 at aa 4-23%2C 60-82%2C 128-150%2C 163-185%2C242-264%2C 281-300%2C 377-399%2C 416-438%2C 484-506 and 523-545;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0676;part=7/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	628562	628630	.	+	.	ID=id-Cj0676-2;Note=10 probable transmembrane helices predicted for Cj0676 by TMHMM2.0 at aa 4-23%2C 60-82%2C 128-150%2C 163-185%2C242-264%2C 281-300%2C 377-399%2C 416-438%2C 484-506 and 523-545;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0676;part=8/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	628766	628834	.	+	.	ID=id-Cj0676-2;Note=10 probable transmembrane helices predicted for Cj0676 by TMHMM2.0 at aa 4-23%2C 60-82%2C 128-150%2C 163-185%2C242-264%2C 281-300%2C 377-399%2C 416-438%2C 484-506 and 523-545;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0676;part=9/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	628883	628951	.	+	.	ID=id-Cj0676-2;Note=10 probable transmembrane helices predicted for Cj0676 by TMHMM2.0 at aa 4-23%2C 60-82%2C 128-150%2C 163-185%2C242-264%2C 281-300%2C 377-399%2C 416-438%2C 484-506 and 523-545;gbkey=misc_feature;gene=kdpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0676;part=10/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	628170	628178	.	+	.	ID=id-Cj0676-3;Note=G(9);gbkey=repeat_region;gene=kdpA;locus_tag=Cj0676
gi|15791399|ref|NC_002163.1|	EMBL	gene	629020	631065	.	+	.	ID=gene-Cj0677;Name=kdpB;gbkey=Gene;gene=kdpB;gene_biotype=protein_coding;locus_tag=Cj0677
gi|15791399|ref|NC_002163.1|	EMBL	CDS	629020	631065	.	+	0	ID=cds-CAL34814.1;Parent=gene-Cj0677;Dbxref=EnsemblGenomes-Gn:Cj0677,EnsemblGenomes-Tr:CAL34814,GOA:Q0PAK1,InterPro:IPR001757,InterPro:IPR006391,InterPro:IPR008250,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR023299,UniProtKB/TrEMBL:Q0PAK1,NCBI_GP:CAL34814.1;Name=CAL34814.1;Note=Original (2000) note: Cj0677%2C kdpB%2C probable potassium-transporting ATPase B chain%2C len: 681 aa%3B similar to e.g. ATKB_ECOLI potassium-transporting ATPase B chain (EC 3.6.1.36) (682 aa)%2C fasta scores%3B opt: 2419 z-score: 2798.9 E(): 0%2C 56.6%25 identity in 678 aa overlap. No Hp match. Contains PS00154 E1-E2 ATPases phosphorylation site and Pfam match to entry PF00122 E1-E2_ATPase. Note that kdpA (Cj0676) and kdpC (Cj0678) are pseudogenes%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Transport/binding proteins - Cations%3B~PMID:6146979%2C PMID:15919996;gbkey=CDS;gene=kdpB;inference=protein motif:Prosite:PS00154;locus_tag=Cj0677;product=potassium-transporting ATPase B chain;protein_id=CAL34814.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	629119	629187	.	+	.	ID=id-Cj0677;Note=7 probable transmembrane helices predicted for Cj0677 by TMHMM2.0 at aa 34-56%2C 66-83%2C 218-240%2C 250-272%2C583-601%2C 611-633 and 646-668;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0677;part=1/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	629215	629268	.	+	.	ID=id-Cj0677;Note=7 probable transmembrane helices predicted for Cj0677 by TMHMM2.0 at aa 34-56%2C 66-83%2C 218-240%2C 250-272%2C583-601%2C 611-633 and 646-668;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0677;part=2/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	629671	629739	.	+	.	ID=id-Cj0677;Note=7 probable transmembrane helices predicted for Cj0677 by TMHMM2.0 at aa 34-56%2C 66-83%2C 218-240%2C 250-272%2C583-601%2C 611-633 and 646-668;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0677;part=3/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	629767	629835	.	+	.	ID=id-Cj0677;Note=7 probable transmembrane helices predicted for Cj0677 by TMHMM2.0 at aa 34-56%2C 66-83%2C 218-240%2C 250-272%2C583-601%2C 611-633 and 646-668;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0677;part=4/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	630766	630822	.	+	.	ID=id-Cj0677;Note=7 probable transmembrane helices predicted for Cj0677 by TMHMM2.0 at aa 34-56%2C 66-83%2C 218-240%2C 250-272%2C583-601%2C 611-633 and 646-668;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0677;part=5/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	630850	630918	.	+	.	ID=id-Cj0677;Note=7 probable transmembrane helices predicted for Cj0677 by TMHMM2.0 at aa 34-56%2C 66-83%2C 218-240%2C 250-272%2C583-601%2C 611-633 and 646-668;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0677;part=6/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	630955	631023	.	+	.	ID=id-Cj0677;Note=7 probable transmembrane helices predicted for Cj0677 by TMHMM2.0 at aa 34-56%2C 66-83%2C 218-240%2C 250-272%2C583-601%2C 611-633 and 646-668;gbkey=misc_feature;gene=kdpB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0677;part=7/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	629233	629904	.	+	.	ID=id-Cj0677-2;Note=HMMPfam hit to PF00122%2C E1-E2 ATPase%2C score 4.5e-52;gbkey=misc_feature;gene=kdpB;inference=protein motif:Pfam:PF00122;locus_tag=Cj0677
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	629914	630624	.	+	.	ID=id-Cj0677-3;Note=HMMPfam hit to PF00702%2C haloacid dehalogenase-like hydrolase%2C score 1.9e-30;gbkey=misc_feature;gene=kdpB;inference=protein motif:Pfam:PF00702;locus_tag=Cj0677
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	629932	629952	.	+	.	ID=id-Cj0677-4;Note=PS00154 E1-E2 ATPases phosphorylation site;gbkey=misc_feature;gene=kdpB;inference=protein motif:Prosite:PS00154;locus_tag=Cj0677
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	630661	630699	.	+	.	ID=id-Cj0677-5;Note=PS00018 EF-hand calcium-binding domain;gbkey=misc_feature;gene=kdpB;inference=protein motif:Prosite:PS00018;locus_tag=Cj0677
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	631067	631075	.	+	.	ID=gene-Cj0678;Name=kdpC;gbkey=Gene;gene=kdpC;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0678;part=1/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	631077	631661	.	+	.	ID=gene-Cj0678;Name=kdpC;gbkey=Gene;gene=kdpC;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0678;part=2/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	631067	631075	.	+	0	ID=cds-Cj0678;Parent=gene-Cj0678;Note=Original (2000) note: Cj0678%2C kdpC%2C probable potassium-transporting ATPase C chain pseudogene%2C len: 553 bp%3B similar to e.g. ATKC_ECOLI potassium-transporting ATPase C chain (EC 3.6.1.36) (190 aa). No Hp match. Note that kdpA (Cj0676) is a pseudogene%2C but kdpB (Cj0677) is intact%3B~Updated (2006) note: Pfam domain PF02669 K+-transporting ATPase%2C c chain identified within CDS. Also one probable transmembrane helix predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not used within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Cations%3B~PMID:6146979%2C PMID:1532388;gbkey=CDS;gene=kdpC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0678;product=pseudogene (potassium-transporting ATPase C chain);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	631077	631469	.	+	0	ID=cds-Cj0678;Parent=gene-Cj0678;Note=Original (2000) note: Cj0678%2C kdpC%2C probable potassium-transporting ATPase C chain pseudogene%2C len: 553 bp%3B similar to e.g. ATKC_ECOLI potassium-transporting ATPase C chain (EC 3.6.1.36) (190 aa). No Hp match. Note that kdpA (Cj0676) is a pseudogene%2C but kdpB (Cj0677) is intact%3B~Updated (2006) note: Pfam domain PF02669 K+-transporting ATPase%2C c chain identified within CDS. Also one probable transmembrane helix predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not used within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Cations%3B~PMID:6146979%2C PMID:1532388;gbkey=CDS;gene=kdpC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0678;product=pseudogene (potassium-transporting ATPase C chain);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	631459	631587	.	+	0	ID=cds-Cj0678;Parent=gene-Cj0678;Note=Original (2000) note: Cj0678%2C kdpC%2C probable potassium-transporting ATPase C chain pseudogene%2C len: 553 bp%3B similar to e.g. ATKC_ECOLI potassium-transporting ATPase C chain (EC 3.6.1.36) (190 aa). No Hp match. Note that kdpA (Cj0676) is a pseudogene%2C but kdpB (Cj0677) is intact%3B~Updated (2006) note: Pfam domain PF02669 K+-transporting ATPase%2C c chain identified within CDS. Also one probable transmembrane helix predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not used within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Cations%3B~PMID:6146979%2C PMID:1532388;gbkey=CDS;gene=kdpC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0678;product=pseudogene (potassium-transporting ATPase C chain);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	631587	631661	.	+	0	ID=cds-Cj0678;Parent=gene-Cj0678;Note=Original (2000) note: Cj0678%2C kdpC%2C probable potassium-transporting ATPase C chain pseudogene%2C len: 553 bp%3B similar to e.g. ATKC_ECOLI potassium-transporting ATPase C chain (EC 3.6.1.36) (190 aa). No Hp match. Note that kdpA (Cj0676) is a pseudogene%2C but kdpB (Cj0677) is intact%3B~Updated (2006) note: Pfam domain PF02669 K+-transporting ATPase%2C c chain identified within CDS. Also one probable transmembrane helix predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Thus%2C putative not used within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins -Cations%3B~PMID:6146979%2C PMID:1532388;gbkey=CDS;gene=kdpC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0678;product=pseudogene (potassium-transporting ATPase C chain);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	631070	631075	.	+	.	ID=id-Cj0678;Note=HMMPfam hit to PF02669%2C K+-transporting ATPase%2C c chain%2C score 8.8e-32;gbkey=misc_feature;gene=kdpC;inference=protein motif:Pfam:PF02669;is_ordered=true;locus_tag=Cj0678;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	631077	631459	.	+	.	ID=id-Cj0678;Note=HMMPfam hit to PF02669%2C K+-transporting ATPase%2C c chain%2C score 8.8e-32;gbkey=misc_feature;gene=kdpC;inference=protein motif:Pfam:PF02669;is_ordered=true;locus_tag=Cj0678;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	631469	631587	.	+	.	ID=id-Cj0678;Note=HMMPfam hit to PF02669%2C K+-transporting ATPase%2C c chain%2C score 8.8e-32;gbkey=misc_feature;gene=kdpC;inference=protein motif:Pfam:PF02669;is_ordered=true;locus_tag=Cj0678;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	631587	631649	.	+	.	ID=id-Cj0678;Note=HMMPfam hit to PF02669%2C K+-transporting ATPase%2C c chain%2C score 8.8e-32;gbkey=misc_feature;gene=kdpC;inference=protein motif:Pfam:PF02669;is_ordered=true;locus_tag=Cj0678;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	631080	631139	.	+	.	ID=id-Cj0678-2;Note=1 probable transmembrane helix predicted for Cj0678 by TMHMM2.0 at aa 5-24;gbkey=misc_feature;gene=kdpC;inference=protein motif:TMHMM:2.0;locus_tag=Cj0678
gi|15791399|ref|NC_002163.1|	EMBL	gene	631667	633487	.	+	.	ID=gene-Cj0679;Name=kdpD;gbkey=Gene;gene=kdpD;gene_biotype=protein_coding;locus_tag=Cj0679
gi|15791399|ref|NC_002163.1|	EMBL	CDS	631667	633487	.	+	0	ID=cds-CAL34816.1;Parent=gene-Cj0679;Dbxref=EnsemblGenomes-Gn:Cj0679,EnsemblGenomes-Tr:CAL34816,GOA:Q0PAK0,InterPro:IPR003852,InterPro:IPR025201,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAK0,NCBI_GP:CAL34816.1;Name=CAL34816.1;Note=Original (2000) note: Cj0679%2C kdpD'%2C truncated KdpD protein%2C len: 606 aa%3B similar to other kdpD sensor proteins%2C but lacking the C-terminal two-component histidine kinase domain%2C e.g. KDPD_ECOLI sensor protein KDPD (EC 2.7.3.-) (894 aa)%2C fasta scores%3B opt: 883 z-score: 1523.9 E(): 0%2C 34.8%25 identity in 604 aa overlap. No Hp match. Note that C. jejuni apparently lacks a kdpE two-component regulator homolog%3B~Updated (2006) note: Pfam domain PF02702 Osmosensitive K+ channel His kinase sensor domain was identified within CDS. Five probable transmembrane helices predicted by TMHMM2.0. Further support for product function. Putative not added to product function. Functional classification - Transport/binding proteins -Cations%3B~PMID:9226259%2C PMID:7499326%2C PMID:1532388;gbkey=CDS;gene=kdpD;inference=protein motif:TMHMM:2.0;locus_tag=Cj0679;product=truncated KdpD protein;protein_id=CAL34816.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	631739	632365	.	+	.	ID=id-Cj0679;Note=HMMPfam hit to PF02702%2C Osmosensitive K+ channel His kinase sensor d%2C score 1.3e-150;gbkey=misc_feature;gene=kdpD;inference=protein motif:Pfam:PF02702;locus_tag=Cj0679
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	632738	632797	.	+	.	ID=id-Cj0679-2;Note=5 probable transmembrane helices predicted for Cj0679 by TMHMM2.0 at aa 358-377%2C 384-403%2C 413-427%2C432-454 and 464-486;gbkey=misc_feature;gene=kdpD;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0679;part=1/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	632816	632875	.	+	.	ID=id-Cj0679-2;Note=5 probable transmembrane helices predicted for Cj0679 by TMHMM2.0 at aa 358-377%2C 384-403%2C 413-427%2C432-454 and 464-486;gbkey=misc_feature;gene=kdpD;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0679;part=2/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	632903	632947	.	+	.	ID=id-Cj0679-2;Note=5 probable transmembrane helices predicted for Cj0679 by TMHMM2.0 at aa 358-377%2C 384-403%2C 413-427%2C432-454 and 464-486;gbkey=misc_feature;gene=kdpD;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0679;part=3/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	632960	633028	.	+	.	ID=id-Cj0679-2;Note=5 probable transmembrane helices predicted for Cj0679 by TMHMM2.0 at aa 358-377%2C 384-403%2C 413-427%2C432-454 and 464-486;gbkey=misc_feature;gene=kdpD;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0679;part=4/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	633056	633124	.	+	.	ID=id-Cj0679-2;Note=5 probable transmembrane helices predicted for Cj0679 by TMHMM2.0 at aa 358-377%2C 384-403%2C 413-427%2C432-454 and 464-486;gbkey=misc_feature;gene=kdpD;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0679;part=5/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	633589	635562	.	-	.	ID=gene-Cj0680c;Name=uvrB;gbkey=Gene;gene=uvrB;gene_biotype=protein_coding;locus_tag=Cj0680c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	633589	635562	.	-	0	ID=cds-CAL34817.1;Parent=gene-Cj0680c;Dbxref=EnsemblGenomes-Gn:Cj0680c,EnsemblGenomes-Tr:CAL34817,GOA:Q9PPM7,InterPro:IPR001650,InterPro:IPR001943,InterPro:IPR004807,InterPro:IPR006935,InterPro:IPR014001,InterPro:IPR024759,InterPro:IPR027417,NCBI_GP:CAL34817.1;Name=CAL34817.1;Note=Original (2000) note: Cj0680c%2C uvrB%2C probable excinuclease ABC subunit B%2C len: 657 aa%3B highly similar to many e.g. UVRB_ECOLI excinuclease ABC subunit B (673 aa)%2Cfasta scores%3B opt: 2185 z-score: 2414.8 E(): 0%2C 50.8%25 identity in 667 aa overlap. 63.8%25 identity to HP1114. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2Cand Pfam match to entry PF00271 helicase_C%2C Helicases conserved C-terminal domain%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:3008099%2C PMID:10631326%2C PMID:11689453;gbkey=CDS;gene=uvrB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0680c;product=excinuclease ABC subunit B;protein_id=CAL34817.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	633592	633699	.	-	.	ID=id-Cj0680c;Note=HMMPfam hit to PF02151%2C UvrB/uvrC motif%2C score 1.2e-11;gbkey=misc_feature;gene=uvrB;inference=protein motif:Pfam:PF02151;locus_tag=Cj0680c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	633925	634170	.	-	.	ID=id-Cj0680c-2;Note=HMMPfam hit to PF00271%2C Helicase conserved C-terminal domain%2C score 7.4e-18;gbkey=misc_feature;gene=uvrB;inference=protein motif:Pfam:PF00271;locus_tag=Cj0680c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	635182	635541	.	-	.	ID=id-Cj0680c-3;Note=HMMPfam hit to PF04851%2C Type III restriction enzyme%2C res subunit%2C score 1.4e-06;gbkey=misc_feature;gene=uvrB;inference=protein motif:Pfam:PF04851;locus_tag=Cj0680c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	635434	635457	.	-	.	ID=id-Cj0680c-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=uvrB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0680c
gi|15791399|ref|NC_002163.1|	EMBL	gene	635716	635946	.	+	.	ID=gene-Cj0681;Name=Cj0681;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0681
gi|15791399|ref|NC_002163.1|	EMBL	CDS	635716	635946	.	+	0	ID=cds-CAL34818.1;Parent=gene-Cj0681;Dbxref=EnsemblGenomes-Gn:Cj0681,EnsemblGenomes-Tr:CAL34818,UniProtKB/TrEMBL:Q0PAJ8,NCBI_GP:CAL34818.1;Name=CAL34818.1;Note=Original (2000) note: Cj0681%2C unknown%2C len: 76 aa%3B 36.2%25 identity to HP0385. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0681;product=hypothetical protein Cj0681;protein_id=CAL34818.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	635936	636178	.	+	.	ID=gene-Cj0682;Name=Cj0682;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0682
gi|15791399|ref|NC_002163.1|	EMBL	CDS	635936	636178	.	+	0	ID=cds-CAL34819.1;Parent=gene-Cj0682;Dbxref=EnsemblGenomes-Gn:Cj0682,EnsemblGenomes-Tr:CAL34819,UniProtKB/TrEMBL:Q0PAJ7,NCBI_GP:CAL34819.1;Name=CAL34819.1;Note=Original (2000) note: Cj0682%2C unknown%2C len: 80 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0682;product=hypothetical protein Cj0682;protein_id=CAL34819.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	636175	636612	.	+	.	ID=gene-Cj0683;Name=Cj0683;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0683
gi|15791399|ref|NC_002163.1|	EMBL	CDS	636175	636612	.	+	0	ID=cds-CAL34820.1;Parent=gene-Cj0683;Dbxref=EnsemblGenomes-Gn:Cj0683,EnsemblGenomes-Tr:CAL34820,InterPro:IPR012902,UniProtKB/TrEMBL:Q0PAJ6,NCBI_GP:CAL34820.1;Name=CAL34820.1;Note=Original (2000) note: Cj0683%2C probable periplasmic protein%2C len: 145 aa%3B no Hp match%3B~Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0. Further support for product function. Pfam domain PF07963 Prokaryotic N-terminal methylation motif was identified within CDS. The motif is involved in methylation and is said to be found at the N-terminus of pilins and other proteins involved in secretion. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0683;product=putative periplasmic protein;protein_id=CAL34820.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	636181	636252	.	+	.	ID=id-Cj0683;Note=HMMPfam hit to PF07963%2C Prokaryotic N-terminal methylation motif%2C score 0.0002;gbkey=misc_feature;inference=protein motif:Pfam:PF07963;locus_tag=Cj0683
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	636187	636255	.	+	.	ID=id-Cj0683-2;Note=1 probable transmembrane helix predicted for Cj0683 by TMHMM2.0 at aa 5-27;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0683
gi|15791399|ref|NC_002163.1|	EMBL	gene	636594	638447	.	+	.	ID=gene-Cj0684;Name=priA;gbkey=Gene;gene=priA;gene_biotype=protein_coding;locus_tag=Cj0684
gi|15791399|ref|NC_002163.1|	EMBL	CDS	636594	638447	.	+	0	ID=cds-CAL34821.1;Parent=gene-Cj0684;Dbxref=EnsemblGenomes-Gn:Cj0684,EnsemblGenomes-Tr:CAL34821,GOA:Q0PAJ5,InterPro:IPR001650,InterPro:IPR005259,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAJ5,NCBI_GP:CAL34821.1;Name=CAL34821.1;Note=Original (2000) note: Cj0684%2C priA%2C probable primosomal protein N'%2C len: 617 aa%3B similar to e.g. PRIA_BACSU primosomal protein N' (replication factor Y) (805 aa)%2C fasta scores%3B opt: 566 z-score: 629.9 E(): 8.7e-28%2C 33.1%25 identity in 525 aa overlap. 45.6%25 identity to HP0387. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00271 helicase_C%2CHelicases conserved C-terminal domain%3B~Updated (2006) note: Pfam domains PF04851 Type III restriction enzyme%2C res subunit and PF00270 DEAD/DEAH box helicase were identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with marginal identity score. Sequence alignment was only partial. Putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:9086272;gbkey=CDS;gene=priA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0684;product=putative primosomal protein N';protein_id=CAL34821.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	636933	637415	.	+	.	ID=id-Cj0684;Note=HMMPfam hit to PF04851%2C Type III restriction enzyme%2C res subunit%2C score 2e-06;gbkey=misc_feature;gene=priA;inference=protein motif:Pfam:PF04851;locus_tag=Cj0684
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	636939	637433	.	+	.	ID=id-Cj0684-2;Note=HMMPfam hit to PF00270%2C DEAD/DEAH box helicase%2Cscore 9.2e-11;gbkey=misc_feature;gene=priA;inference=protein motif:Pfam:PF00270;locus_tag=Cj0684
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	637002	637025	.	+	.	ID=id-Cj0684-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=priA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0684
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	637809	638066	.	+	.	ID=id-Cj0684-4;Note=HMMPfam hit to PF00271%2C Helicase conserved C-terminal domain%2C score 2.2e-06;gbkey=misc_feature;gene=priA;inference=protein motif:Pfam:PF00271;locus_tag=Cj0684
gi|15791399|ref|NC_002163.1|	EMBL	gene	638540	639892	.	-	.	ID=gene-Cj0685c;Name=cipA;gbkey=Gene;gene=cipA;gene_biotype=protein_coding;locus_tag=Cj0685c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	638540	639892	.	-	0	ID=cds-CAL34822.1;Parent=gene-Cj0685c;Dbxref=EnsemblGenomes-Gn:Cj0685c,EnsemblGenomes-Tr:CAL34822,InterPro:IPR021353,UniProtKB/TrEMBL:Q0PAJ4,NCBI_GP:CAL34822.1;Name=CAL34822.1;Note=Original (2000) note: Cj0685c%2C possible sugar transferase%2C len: 450 aa%3B no Hp match. Contains variable poly-G tract near C-terminus%3B G9 (consensus) allows complete translation%2C G10 would cause truncation at aa 233. Some similarity to Cj1421c (28.0%25 identity in 404 aa overlap) and Cj1422c (25.3%25 identity in 442 aa overlap)%2Cboth of which contain variable polyG tracts%2C though in different positions. Putative functional assignment is based on family clustering (BLASTP) with other C. jejuni predicted sugar transferases e%2Cg%2C Cj1434c%2C and Cj1438c%3B~Updated (2006) note: No specific characterisation carried out yet. Putative kept within product function. Original and updated annotation kept designation as putative sugar transferase. This gene has now been patented as encoding invasion protein of Campylobacter species. Also%2C work has been carried out within a PhD thesis. Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~http://www.freepatentsonline.com/6087105.html%3B~http://www.collectionscanada.ca/obj/s4/f2/dsk1/tape9/PQDD_0004/MQ46044.pdf#search%3D%2522cipA%2520AND%2520campylobacter%2522;gbkey=CDS;gene=cipA;locus_tag=Cj0685c;product=Invasion protein CipA;protein_id=CAL34822.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	638948	638995	.	-	.	ID=id-Cj0685c;Note=PS00225 Crystallins beta and gamma 'Greek key' motif signature;gbkey=misc_feature;gene=cipA;inference=protein motif:Prosite:PS00225;locus_tag=Cj0685c
gi|15791399|ref|NC_002163.1|	EMBL	gene	639998	641071	.	+	.	ID=gene-Cj0686;Name=ispG;gbkey=Gene;gene=ispG;gene_biotype=protein_coding;locus_tag=Cj0686
gi|15791399|ref|NC_002163.1|	EMBL	CDS	639998	641071	.	+	0	ID=cds-CAL34823.1;Parent=gene-Cj0686;Dbxref=EnsemblGenomes-Gn:Cj0686,EnsemblGenomes-Tr:CAL34823,GOA:Q9PPM1,InterPro:IPR004588,InterPro:IPR011005,InterPro:IPR016425,NCBI_GP:CAL34823.1;Name=CAL34823.1;Note=Original (2000) note: Cj0686%2C gcpE%2C unknown%2C len: 357 aa%3B similar to e.g. GCPE_ECOLI GCPE protein (protein E) (372 aa)%2C fasta scores%3B opt: 907 z-score: 1058.3 E(): 0%2C 41.7%25 identity in 345 aa overlap%2C and to Providencia stuartii TR:P72241 (EMBL:U67933) AARC (365 aa)%2C involved in in density-dependent regulation of 2'-N-acetyltransferase%2C fasta scores%3B opt: 902 z-score: 1052.6 E(): 0%2C 40.6%25 identity in 352 aa overlap. 62.3%25 identity to HP0625%3B~Updated (2006) note: Pfam domain PF04551 GcpE protein was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Product function modified to new family member based on characterisation papers. Putative not added to product function. EC number inserted and gene name updated. Functional classification - Misc%3B~PMID:16268586%2C PMID:12571359%2C PMID:11752431%2CPMID:1521767;gbkey=CDS;gene=ispG;inference=protein motif:Pfam:PF04551;locus_tag=Cj0686;product=4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase;protein_id=CAL34823.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	640010	641059	.	+	.	ID=id-Cj0686;Note=HMMPfam hit to PF04551%2C GcpE protein%2C score 7.5e-248;gbkey=misc_feature;gene=ispG;inference=protein motif:Pfam:PF04551;locus_tag=Cj0686
gi|15791399|ref|NC_002163.1|	EMBL	gene	641102	641800	.	-	.	ID=gene-Cj0687c;Name=flgH;gbkey=Gene;gene=flgH;gene_biotype=protein_coding;locus_tag=Cj0687c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	641102	641800	.	-	0	ID=cds-CAL34824.1;Parent=gene-Cj0687c;Dbxref=EnsemblGenomes-Gn:Cj0687c,EnsemblGenomes-Tr:CAL34824,GOA:Q9PPM0,InterPro:IPR000527,NCBI_GP:CAL34824.1;Name=CAL34824.1;Note=Original (2000) note: Cj0687c%2C flgH%2C probable flagellar L-ring protein precursor%2C len: 232 aa%3B similar to e.g. FLGH_ECOLI flagellar L-ring protein precursor (basal body L-ring protein) (232 aa)%2C fasta scores%3B opt: 305 z-score: 348.0 E(): 4.4e-12%2C 26.4%25 identity in 231 aa overlap. 39.3%25 identity to HP0325. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domain PF02107 Flagellar L-ring protein was identified within CDS. Further support given to product function. Characterised within Salmonella typhimurium and Caulobacter crescentus with marginal identity scores. Putative kept within product function. Functional classification - Surface structures%3B~PMID:2544561%2C PMID:2211524;gbkey=CDS;gene=flgH;inference=protein motif:Prosite:PS00013;locus_tag=Cj0687c;product=putative flagellar L-ring protein precursor;protein_id=CAL34824.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	641108	641755	.	-	.	ID=id-Cj0687c;Note=HMMPfam hit to PF02107%2C Flagellar L-ring protein%2Cscore 2.3e-49;gbkey=misc_feature;gene=flgH;inference=protein motif:Pfam:PF02107;locus_tag=Cj0687c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	641753	641785	.	-	.	ID=id-Cj0687c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=flgH;inference=protein motif:Prosite:PS00013;locus_tag=Cj0687c
gi|15791399|ref|NC_002163.1|	EMBL	gene	641890	643395	.	+	.	ID=gene-Cj0688;Name=pta;gbkey=Gene;gene=pta;gene_biotype=protein_coding;locus_tag=Cj0688
gi|15791399|ref|NC_002163.1|	EMBL	CDS	641890	643395	.	+	0	ID=cds-CAL34825.1;Parent=gene-Cj0688;Dbxref=EnsemblGenomes-Gn:Cj0688,EnsemblGenomes-Tr:CAL34825,GOA:Q0PAJ1,InterPro:IPR002505,InterPro:IPR004614,UniProtKB/TrEMBL:Q0PAJ1,NCBI_GP:CAL34825.1;Name=CAL34825.1;Note=Original (2000) note: Cj0688%2C pta%2C probable phosphate acetyltransferase%2C len: 501 aa%3B highly similar in C-terminus to e.g. PTA_ECOLI phosphate acetyltransferase (EC 2.3.1.8) (713 aa)%2C fasta scores%3B opt: 1012 z-score: 1161.8 E(): 0%2C 48.8%25 identity in 326 aa overlap. 24.8%25 identity in N-terminus to HP0905%3B~Updated (2006) note: Pfam domain PF01515 Phosphate acetyl/butaryl transferase was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score%2Chowever%2C sequence alignment was only partial. Putative kept within product function. Literature search identified paper linking product function to biofilm formation (PMID:16436427). Functional classification - Degradation -Carbon compounds%3B~PMID:16436427%2C PMID:7883769;gbkey=CDS;gene=pta;inference=protein motif:Pfam:PF01515;locus_tag=Cj0688;product=putative phosphate acetyltransferase;protein_id=CAL34825.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	642427	643380	.	+	.	ID=id-Cj0688;Note=HMMPfam hit to PF01515%2C Phosphate acetyl/butaryl transferase%2C score 2e-159;gbkey=misc_feature;gene=pta;inference=protein motif:Pfam:PF01515;locus_tag=Cj0688
gi|15791399|ref|NC_002163.1|	EMBL	gene	643409	644599	.	+	.	ID=gene-Cj0689;Name=ackA;gbkey=Gene;gene=ackA;gene_biotype=protein_coding;locus_tag=Cj0689
gi|15791399|ref|NC_002163.1|	EMBL	CDS	643409	644599	.	+	0	ID=cds-CAL34826.1;Parent=gene-Cj0689;Dbxref=EnsemblGenomes-Gn:Cj0689,EnsemblGenomes-Tr:CAL34826,GOA:Q9PPL8,InterPro:IPR000890,InterPro:IPR004372,InterPro:IPR023865,NCBI_GP:CAL34826.1;Name=CAL34826.1;Note=Original (2000) note: Cj0689%2C ackA%2C probable acetate kinase%2C len: 396 aa%3B highly similar to e.g. ACKA_ECOLI acetate kinase (EC 2.7.2.1) (acetokinase) (400 aa)%2C fasta scores%3B opt: 1048 z-score: 1254.5 E(): 0%2C 46.6%25 identity in 395 aa overlap. No Hp match. Contains PS01075 and PS01076 Acetate and butyrate kinases family signature 1 and 2%2C and Pfam match to entry PF00871 Acetate_kinase%2CAcetokinase family%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Energy metabolism - Electron transport%3B~PMID:7883769;gbkey=CDS;gene=ackA;inference=protein motif:Prosite:PS01076;locus_tag=Cj0689;product=acetate kinase;protein_id=CAL34826.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	643412	644569	.	+	.	ID=id-Cj0689;Note=HMMPfam hit to PF00871%2C Acetokinase family%2C score 1.4e-188;gbkey=misc_feature;gene=ackA;inference=protein motif:Pfam:PF00871;locus_tag=Cj0689
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	643415	643450	.	+	.	ID=id-Cj0689-2;Note=PS01075 Acetate and butyrate kinases family signature 1;gbkey=misc_feature;gene=ackA;inference=protein motif:Prosite:PS01075;locus_tag=Cj0689
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	644009	644062	.	+	.	ID=id-Cj0689-3;Note=PS01076 Acetate and butyrate kinases family signature 2;gbkey=misc_feature;gene=ackA;inference=protein motif:Prosite:PS01076;locus_tag=Cj0689
gi|15791399|ref|NC_002163.1|	EMBL	gene	644627	648379	.	-	.	ID=gene-Cj0690c;Name=Cj0690c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0690c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	644627	648379	.	-	0	ID=cds-CAL34827.1;Parent=gene-Cj0690c;Dbxref=EnsemblGenomes-Gn:Cj0690c,EnsemblGenomes-Tr:CAL34827,GOA:Q0PAI9,InterPro:IPR002052,InterPro:IPR002296,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PAI9,NCBI_GP:CAL34827.1;Name=CAL34827.1;Note=Original (2000) note: Cj0690c%2C possible restriction/modification enzyme%2C len: 1250 aa%3B similar to Borrelia burgdorferi plasmid TR:O50698 (EMBL:AE000785) hypotheticalprotein BBE02 (1277 aa)%2C fasta scores%3B opt: 1517 z-score: 1607.6 E(): 0%2C 35.0%25 identity in 1304 aa overlap. Very weak similarity to T257_ECOLI type IIS restriction enzyme ECO57I (997 aa)%2C fasta scores%3B opt: 156 z-score: 163.4 E(): 0.083%2C 19.6%25 identity in 981 aa overlap. No Hp ortholog. Some simlarity to Cj0031 (25.0%25 identity in 859 aa overlap). Contains PS00092 N-6 Adenine-specific DNA methylases signature%3B~Updated (2006) note: Pfam domain PF04313 Type I restriction enzyme R protein N terminal was identified within CDS. Further support given to product function. Probable replaced with putative. Product function modified to more specific family member based on motif match. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Prosite:PS00092;locus_tag=Cj0690c;product=putative restriction/modification enzyme;protein_id=CAL34827.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	646106	646126	.	-	.	ID=id-Cj0690c;Note=PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00092;locus_tag=Cj0690c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	647846	648214	.	-	.	ID=id-Cj0690c-2;Note=HMMPfam hit to PF04313%2C Type I restriction enzyme R protein N termin%2C score 3.1e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF04313;locus_tag=Cj0690c
gi|15791399|ref|NC_002163.1|	EMBL	gene	648529	649020	.	+	.	ID=gene-Cj0691;Name=Cj0691;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0691
gi|15791399|ref|NC_002163.1|	EMBL	CDS	648529	649020	.	+	0	ID=cds-CAL34828.1;Parent=gene-Cj0691;Dbxref=EnsemblGenomes-Gn:Cj0691,EnsemblGenomes-Tr:CAL34828,UniProtKB/TrEMBL:Q0PAI8,NCBI_GP:CAL34828.1;Name=CAL34828.1;Note=Original (2000) note: Cj0691%2C possible membrane protein%2C len: 163 aa%3B no Hp match. Contains two possible transmembrane domains. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj0691;product=putative membrane protein;protein_id=CAL34828.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	648685	648753	.	+	.	ID=id-Cj0691;Note=2 probable transmembrane helices predicted for Cj0691 by TMHMM2.0 at aa 53-75 and 80-102;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0691;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	648766	648834	.	+	.	ID=id-Cj0691;Note=2 probable transmembrane helices predicted for Cj0691 by TMHMM2.0 at aa 53-75 and 80-102;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0691;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	648775	648807	.	+	.	ID=id-Cj0691-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0691
gi|15791399|ref|NC_002163.1|	EMBL	gene	649008	649946	.	-	.	ID=gene-Cj0692c;Name=Cj0692c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0692c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	649008	649946	.	-	0	ID=cds-CAL34829.1;Parent=gene-Cj0692c;Dbxref=EnsemblGenomes-Gn:Cj0692c,EnsemblGenomes-Tr:CAL34829,UniProtKB/TrEMBL:Q0PAI7,NCBI_GP:CAL34829.1;Name=CAL34829.1;Note=Original (2000) note: Cj0692c%2C possible membrane protein%2C len: 312 aa%3B 34.7%25 identity in N-terminus to HP0708 (114 aa). Contains one possible transmembrane domain. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;locus_tag=Cj0692c;product=putative membrane protein;protein_id=CAL34829.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	649152	649220	.	-	.	ID=id-Cj0692c;Note=1 probable transmembrane helix predicted for Cj0692c by TMHMM2.0 at aa 243-265;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0692c
gi|15791399|ref|NC_002163.1|	EMBL	gene	649946	650884	.	-	.	ID=gene-Cj0693c;Name=mraW;gbkey=Gene;gene=mraW;gene_biotype=protein_coding;locus_tag=Cj0693c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	649946	650884	.	-	0	ID=cds-CAL34830.1;Parent=gene-Cj0693c;Dbxref=EnsemblGenomes-Gn:Cj0693c,EnsemblGenomes-Tr:CAL34830,GOA:Q9PPL4,InterPro:IPR002903,InterPro:IPR023397,InterPro:IPR029063,NCBI_GP:CAL34830.1;Name=CAL34830.1;Note=Original (2000) note: Cj0693c%2C unknown%2C len: 312 aa%3B similar to members of the YABC/YLXA family of hypothetical proteins e.g. YLXA_BACSU (311 aa)%2C fasta scores%3B opt: 584 z-score: 670.8 E(): 4.6e-30%2C 39.8%25 identity in 304 aa overlap. 47.4%25 identity to HP0707%3B~Updated (2006) note: Pfam domain PF01795 MraW methylase family was identified within CDS. Characterised within Escherichia coli with marginal identity score. Product modified to more specific family member based on motif and characterisation. Putative not added to product function. EC number and gene name added. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:10572301;gbkey=CDS;gene=mraW;inference=protein motif:Pfam:PF01795;locus_tag=Cj0693c;product=S-adenosyl-methyltransferase;protein_id=CAL34830.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	649964	650875	.	-	.	ID=id-Cj0693c;Note=HMMPfam hit to PF01795%2C MraW methylase family%2Cscore 7.1e-110;gbkey=misc_feature;gene=mraW;inference=protein motif:Pfam:PF01795;locus_tag=Cj0693c
gi|15791399|ref|NC_002163.1|	EMBL	gene	651043	652533	.	+	.	ID=gene-Cj0694;Name=Cj0694;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0694
gi|15791399|ref|NC_002163.1|	EMBL	CDS	651043	652533	.	+	0	ID=cds-CAL34831.1;Parent=gene-Cj0694;Dbxref=EnsemblGenomes-Gn:Cj0694,EnsemblGenomes-Tr:CAL34831,GOA:Q0PAI5,InterPro:IPR000297,InterPro:IPR027304,UniProtKB/TrEMBL:Q0PAI5,NCBI_GP:CAL34831.1;Name=CAL34831.1;Note=Original (2000) note: Cj0694%2C probable periplasmic protein%2C len: 496 aa%3B C-terminus is almost identical to C. jejuni ORF TR:Q46115 (EMBL:X95910). 31.9%25 identity toHP0977. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Literature search identified paper linking product function to glycoprotein. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:12186869;gbkey=CDS;locus_tag=Cj0694;product=putative periplasmic protein;protein_id=CAL34831.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	651076	651144	.	+	.	ID=id-Cj0694;Note=1 probable transmembrane helix predicted for Cj0694 by TMHMM2.0 at aa 12-34;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0694
gi|15791399|ref|NC_002163.1|	EMBL	gene	652530	653918	.	+	.	ID=gene-Cj0695;Name=ftsA;gbkey=Gene;gene=ftsA;gene_biotype=protein_coding;locus_tag=Cj0695
gi|15791399|ref|NC_002163.1|	EMBL	CDS	652530	653918	.	+	0	ID=cds-CAL34832.1;Parent=gene-Cj0695;Dbxref=EnsemblGenomes-Gn:Cj0695,EnsemblGenomes-Tr:CAL34832,GOA:Q0PAI4,InterPro:IPR003494,InterPro:IPR020823,UniProtKB/TrEMBL:Q0PAI4,NCBI_GP:CAL34832.1;Name=CAL34832.1;Note=Original (2000) note: Cj0695%2C ftsA%2C probable cell division protein%2C len: 462%3B identical%2C except for a small frameshift%2C to C. jejuni ftsA TR:Q46116 (EMBL:X95910). Similar to many e.g. FTSA_ECOLI cell division protein FTSA (420 aa)%2C fasta scores%3B opt: 570 z-score: 635.2 E(): 4.4e-28%2C 27.7%25 identity in 382 aa overlap. 37.2%25 identity to HP0978%3B~Updated (2006) note: Pfam domains PF02491 (x2) Cell division protein FtsA were identified within CDS. Further support given to product function. Characterisation work has been carried out within Campylobacter jejuni. Putative not added to product function. Functional classification -Cell division%3B~PMID:8807806;gbkey=CDS;gene=ftsA;inference=protein motif:Pfam:PF02491;locus_tag=Cj0695;product=cell division protein FtsA;protein_id=CAL34832.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	652542	653105	.	+	.	ID=id-Cj0695;Note=HMMPfam hit to PF02491%2C Cell division protein FtsA%2Cscore 4.3e-31;gbkey=misc_feature;gene=ftsA;inference=protein motif:Pfam:PF02491;locus_tag=Cj0695
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	653070	653102	.	+	.	ID=id-Cj0695-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ftsA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0695
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	653109	653645	.	+	.	ID=id-Cj0695-3;Note=HMMPfam hit to PF02491%2C Cell division protein FtsA%2Cscore 2.1e-21;gbkey=misc_feature;gene=ftsA;inference=protein motif:Pfam:PF02491;locus_tag=Cj0695
gi|15791399|ref|NC_002163.1|	EMBL	gene	653934	655046	.	+	.	ID=gene-Cj0696;Name=ftsZ;gbkey=Gene;gene=ftsZ;gene_biotype=protein_coding;locus_tag=Cj0696
gi|15791399|ref|NC_002163.1|	EMBL	CDS	653934	655046	.	+	0	ID=cds-CAL34833.1;Parent=gene-Cj0696;Dbxref=EnsemblGenomes-Gn:Cj0696,EnsemblGenomes-Tr:CAL34833,GOA:Q0PAI3,InterPro:IPR000158,InterPro:IPR003008,InterPro:IPR008280,InterPro:IPR018316,InterPro:IPR020805,InterPro:IPR024757,UniProtKB/TrEMBL:Q0PAI3,NCBI_GP:CAL34833.1;Name=CAL34833.1;Note=Original (2000) note: Cj0696%2C ftsZ%2C probable cell division protein%2C len: 370 aa%3B highly similar to many e.g. FTSZ_BACSU cell division protein FTSZ (382 aa)%2C fasta scores%3B opt: 993 z-score: 1064.7 E(): 0%2C 45.9%25 identity in 340 aa overlap. 45.5%25 identity to HP0979. Contains PS01135 FtsZ protein signature 2%3B~Updated (2006) note: Pfam domains PF00091 Tubulin/FtsZ family%2C GTPase domain and PF03953 Tubulin/FtsZ family%2C C-terminal domain were identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification - Cell division%3B~PMID:3139638;gbkey=CDS;gene=ftsZ;inference=protein motif:Prosite:PS01135;locus_tag=Cj0696;product=cell division protein FfsZ;protein_id=CAL34833.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	653976	654557	.	+	.	ID=id-Cj0696;Note=HMMPfam hit to PF00091%2C Tubulin/FtsZ family%2C GTPase domain%2C score 1.9e-81;gbkey=misc_feature;gene=ftsZ;inference=protein motif:Pfam:PF00091;locus_tag=Cj0696
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	654231	654296	.	+	.	ID=id-Cj0696-2;Note=PS01135 FtsZ protein signature 2;gbkey=misc_feature;gene=ftsZ;inference=protein motif:Prosite:PS01135;locus_tag=Cj0696
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	654561	654929	.	+	.	ID=id-Cj0696-3;Note=HMMPfam hit to PF03953%2C Tubulin/FtsZ family%2CC-terminal domain%2C score 4e-25;gbkey=misc_feature;gene=ftsZ;inference=protein motif:Pfam:PF03953;locus_tag=Cj0696
gi|15791399|ref|NC_002163.1|	EMBL	gene	655202	656014	.	+	.	ID=gene-Cj0697;Name=flgG2;gbkey=Gene;gene=flgG2;gene_biotype=protein_coding;locus_tag=Cj0697
gi|15791399|ref|NC_002163.1|	EMBL	CDS	655202	656014	.	+	0	ID=cds-CAL34834.1;Parent=gene-Cj0697;Dbxref=EnsemblGenomes-Gn:Cj0697,EnsemblGenomes-Tr:CAL34834,GOA:Q0PAI2,InterPro:IPR001444,InterPro:IPR010930,InterPro:IPR019776,InterPro:IPR020013,UniProtKB/TrEMBL:Q0PAI2,NCBI_GP:CAL34834.1;Name=CAL34834.1;Note=Original (2000) note: Cj0697%2C flgG2%2C probable flagellar basal-body rod protein%2C len: 270 aa%3B similar to e.g. FLGG_ECOLI flagellar basal-body rod protein FLGG (260 aa)%2C fasta scores%3B opt: 290 z-score: 318.7 E(): 1.9e-10%2C28.7%25 identity in 272 aa overlap. 42.6%25 identity to HP1092. Also similar to downstream gene Cj0698 (flgG%2C29.9%25 identity in 281 aa overlap). Contains PS00588 Flagella basal body rod proteins signature and Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%3B~Updated (2006) note: Characterised within Escherichia coli with marginal identity score. Also%2Ccharacterisation work within Campylobacter jejuni. Putative removed from product function. Functional classification - Surface structures%3B~PMID:9931471%2C PMID:15228533;gbkey=CDS;gene=flgG2;inference=protein motif:Prosite:PS00588;locus_tag=Cj0697;product=flagellar basal-body rod protein;protein_id=CAL34834.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	655214	655306	.	+	.	ID=id-Cj0697;Note=HMMPfam hit to PF00460%2C Flagella basal body rod protein%2C score 9.9e-09;gbkey=misc_feature;gene=flgG2;inference=protein motif:Pfam:PF00460;locus_tag=Cj0697
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	655232	655294	.	+	.	ID=id-Cj0697-2;Note=PS00588 Flagella basal body rod proteins signature;gbkey=misc_feature;gene=flgG2;inference=protein motif:Prosite:PS00588;locus_tag=Cj0697
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	655877	655996	.	+	.	ID=id-Cj0697-3;Note=HMMPfam hit to PF06429%2C Domain of unknown function (DUF1078)%2C score 0.0011;gbkey=misc_feature;gene=flgG2;inference=protein motif:Pfam:PF06429;locus_tag=Cj0697
gi|15791399|ref|NC_002163.1|	EMBL	gene	656043	656834	.	+	.	ID=gene-Cj0698;Name=flgG;gbkey=Gene;gene=flgG;gene_biotype=protein_coding;locus_tag=Cj0698
gi|15791399|ref|NC_002163.1|	EMBL	CDS	656043	656834	.	+	0	ID=cds-CAL34835.1;Parent=gene-Cj0698;Dbxref=EnsemblGenomes-Gn:Cj0698,EnsemblGenomes-Tr:CAL34835,GOA:Q0PAI1,InterPro:IPR001444,InterPro:IPR010930,InterPro:IPR012834,InterPro:IPR019776,InterPro:IPR020013,UniProtKB/TrEMBL:Q0PAI1,NCBI_GP:CAL34835.1;Name=CAL34835.1;Note=Original (2000) note: Cj0698%2C flgG%2C probable flagellar basal-body rod protein%2C len: 263 aa%3B highly similar to e.g. FLGG_ECOLI flagellar basal-body rod protein FLGG (260 aa)%2C fasta scores%3B opt: 825 z-score: 886.8 E(): 0%2C 46.4%25 identity in 261 aa overlap. 62.0%25 identity to HP1585%3B also similar to upstream gene Cj0697 (flgG2%2C 29.4%25 identity in 279 aa overlap). Contains PS00588 Flagella basal body rod proteins signature and Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Also%2Ccharacterisation work within Campylobacter jejuni. Putative not added to product function. Functional classification - Surface structures%3B~PMID:9931471%2C PMID:15228533;gbkey=CDS;gene=flgG;inference=protein motif:Prosite:PS00588;locus_tag=Cj0698;product=flagellar basal-body rod protein;protein_id=CAL34835.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	656055	656147	.	+	.	ID=id-Cj0698;Note=HMMPfam hit to PF00460%2C Flagella basal body rod protein%2C score 5.6e-13;gbkey=misc_feature;gene=flgG;inference=protein motif:Pfam:PF00460;locus_tag=Cj0698
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	656073	656135	.	+	.	ID=id-Cj0698-2;Note=PS00588 Flagella basal body rod proteins signature;gbkey=misc_feature;gene=flgG;inference=protein motif:Prosite:PS00588;locus_tag=Cj0698
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	656709	656825	.	+	.	ID=id-Cj0698-3;Note=HMMPfam hit to PF06429%2C Domain of unknown function (DUF1078)%2C score 1.2e-19;gbkey=misc_feature;gene=flgG;inference=protein motif:Pfam:PF06429;locus_tag=Cj0698
gi|15791399|ref|NC_002163.1|	EMBL	gene	656901	658331	.	-	.	ID=gene-Cj0699c;Name=glnA;gbkey=Gene;gene=glnA;gene_biotype=protein_coding;locus_tag=Cj0699c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	656901	658331	.	-	0	ID=cds-CAL34836.1;Parent=gene-Cj0699c;Dbxref=EnsemblGenomes-Gn:Cj0699c,EnsemblGenomes-Tr:CAL34836,GOA:Q0PAI0,InterPro:IPR004809,InterPro:IPR008146,InterPro:IPR008147,InterPro:IPR014746,InterPro:IPR027302,InterPro:IPR027303,UniProtKB/TrEMBL:Q0PAI0,NCBI_GP:CAL34836.1;Name=CAL34836.1;Note=Original (2000) note: Cj0699c%2C glnA%2C probable glutamine synthetase%2C len: 476 aa%3B highly similar to many e.g. GLNA_ECOLI glutamine synthetase (EC 6.3.1.2) (468 aa)%2C fasta scores%3B opt: 1529 z-score: 1812.8 E(): 0%2C51.5%25 identity in 462 aa overlap. 63.6%25 identity to HP0512. Contains PS00180 Glutamine synthetase signature 1%2CPS00181 Glutamine synthetase putative ATP-binding region signature%2C and Pfam match to entry PF00120 gln-synt%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Glutamate family%3B~PMID:2882477;gbkey=CDS;gene=glnA;inference=protein motif:Prosite:PS00181;locus_tag=Cj0699c;product=glutamine synthetase;protein_id=CAL34836.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	657165	658013	.	-	.	ID=id-Cj0699c;Note=HMMPfam hit to PF00120%2C Glutamine synthetase%2Ccatalytic domain%2C score 8.5e-160;gbkey=misc_feature;gene=glnA;inference=protein motif:Pfam:PF00120;locus_tag=Cj0699c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	657495	657542	.	-	.	ID=id-Cj0699c-2;Note=PS00181 Glutamine synthetase putative ATP-binding region signature;gbkey=misc_feature;gene=glnA;inference=protein motif:Prosite:PS00181;locus_tag=Cj0699c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	658029	658277	.	-	.	ID=id-Cj0699c-3;Note=HMMPfam hit to PF03951%2C Glutamine synthetase%2Cbeta-Grasp domain%2C score 6e-42;gbkey=misc_feature;gene=glnA;inference=protein motif:Pfam:PF03951;locus_tag=Cj0699c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	658113	658169	.	-	.	ID=id-Cj0699c-4;Note=PS00180 Glutamine synthetase signature 1;gbkey=misc_feature;gene=glnA;inference=protein motif:Prosite:PS00180;locus_tag=Cj0699c
gi|15791399|ref|NC_002163.1|	EMBL	gene	658534	659229	.	+	.	ID=gene-Cj0700;Name=Cj0700;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0700
gi|15791399|ref|NC_002163.1|	EMBL	CDS	658534	659229	.	+	0	ID=cds-CAL34837.1;Parent=gene-Cj0700;Dbxref=EnsemblGenomes-Gn:Cj0700,EnsemblGenomes-Tr:CAL34837,UniProtKB/TrEMBL:Q0PAH9,NCBI_GP:CAL34837.1;Name=CAL34837.1;Note=Original (2000) note: Cj0700%2C unknown%2C len: 231 aa%3B 49.4%25 identity to HP0170. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0700;product=hypothetical protein Cj0700;protein_id=CAL34837.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	659226	660479	.	+	.	ID=gene-Cj0701;Name=Cj0701;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0701
gi|15791399|ref|NC_002163.1|	EMBL	CDS	659226	660479	.	+	0	ID=cds-CAL34838.1;Parent=gene-Cj0701;Dbxref=EnsemblGenomes-Gn:Cj0701,EnsemblGenomes-Tr:CAL34838,GOA:Q0PAH8,InterPro:IPR001539,UniProtKB/TrEMBL:Q0PAH8,NCBI_GP:CAL34838.1;Name=CAL34838.1;Note=Original (2000) note: Cj0701%2C probable protease%2Clen: 417 aa%3B similar to many putative proteases belonging to the peptidase family U32%2C e.g. YEGQ_ECOLI putative protease in baer-ogrk intergenic Region (453 aa)%2C fasta scores%3B opt: 567 z-score: 648.6 E(): 7.9e-29%2C 34.9%25 identity in 404 aa overlap. 55.5%25 identity to HP0169. Contains PS01276 Peptidase family U32 signature and Pfam match to entry PF01136 Peptidase_U32%3B~Updated (2006) note: Similar to many with marginal identity scores. Putative kept within product function. Functional classification - Degradation of macromolecules - Proteins%2C peptides and glycopeptides;gbkey=CDS;inference=protein motif:Prosite:PS01276;locus_tag=Cj0701;product=putative protease;protein_id=CAL34838.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	659451	660149	.	+	.	ID=id-Cj0701;Note=HMMPfam hit to PF01136%2C Peptidase family U32%2C score 8.5e-117;gbkey=misc_feature;inference=protein motif:Pfam:PF01136;locus_tag=Cj0701
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	659709	659765	.	+	.	ID=id-Cj0701-2;Note=PS01276 Peptidase family U32 signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01276;locus_tag=Cj0701
gi|15791399|ref|NC_002163.1|	EMBL	gene	660480	660974	.	+	.	ID=gene-Cj0702;Name=purE;gbkey=Gene;gene=purE;gene_biotype=protein_coding;locus_tag=Cj0702
gi|15791399|ref|NC_002163.1|	EMBL	CDS	660480	660974	.	+	0	ID=cds-CAL34839.1;Parent=gene-Cj0702;Dbxref=EnsemblGenomes-Gn:Cj0702,EnsemblGenomes-Tr:CAL34839,GOA:Q0PAH7,InterPro:IPR000031,InterPro:IPR024694,UniProtKB/TrEMBL:Q0PAH7,NCBI_GP:CAL34839.1;Name=CAL34839.1;Note=Original (2000) note: Cj0702%2C purE%2C probable phosphoribosylaminoimidazole carboxylase catalytic subunit%2C len: 164 aa%3B similar to many e.g. PUR6_ECOLI phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) (168 aa)%2C fasta scores%3B opt: 485 z-score: 562.6 E(): 4.9e-24%2C 55.2%25 identity in 143 aa overlap. No Hp match. Contains Pfam match to entry PF00731 AIRC%2C AIR carboxylase%3B~Updated (2006) note: Characterised within Escherichia coli and Bacillus subtilus with acceptable identity scores. Putative not added to product function. Functional classification - Purine ribonucleotide biosynthesis%3B~PMID:10074353%2C PMID:2464576;gbkey=CDS;gene=purE;inference=protein motif:Pfam:PF00731;locus_tag=Cj0702;product=phosphoribosylaminoimidazole carboxylase catalytic subunit;protein_id=CAL34839.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	660489	660959	.	+	.	ID=id-Cj0702;Note=HMMPfam hit to PF00731%2C AIR carboxylase%2C score 1.1e-72;gbkey=misc_feature;gene=purE;inference=protein motif:Pfam:PF00731;locus_tag=Cj0702
gi|15791399|ref|NC_002163.1|	EMBL	gene	660984	661520	.	+	.	ID=gene-Cj0703;Name=Cj0703;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0703
gi|15791399|ref|NC_002163.1|	EMBL	CDS	660984	661520	.	+	0	ID=cds-CAL34840.1;Parent=gene-Cj0703;Dbxref=EnsemblGenomes-Gn:Cj0703,EnsemblGenomes-Tr:CAL34840,InterPro:IPR025002,UniProtKB/TrEMBL:Q0PAH6,NCBI_GP:CAL34840.1;Name=CAL34840.1;Note=Original (2000) note: Cj0703%2C unknown%2C len: 178 aa%3B 51.0%25 identity to HP0406. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0703;product=hypothetical protein Cj0703;protein_id=CAL34840.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	661532	662395	.	+	.	ID=gene-Cj0704;Name=glyQ;gbkey=Gene;gene=glyQ;gene_biotype=protein_coding;locus_tag=Cj0704
gi|15791399|ref|NC_002163.1|	EMBL	CDS	661532	662395	.	+	0	ID=cds-CAL34841.1;Parent=gene-Cj0704;Dbxref=EnsemblGenomes-Gn:Cj0704,EnsemblGenomes-Tr:CAL34841,GOA:Q9PPK3,InterPro:IPR002310,InterPro:IPR006194,PDB:3RGL,PDB:3UFG,NCBI_GP:CAL34841.1;Name=CAL34841.1;Note=Original (2000) note: Cj0704%2C glyQ%2C probable glycyl-tRNA synthetase alpha chain%2C len: 287 aa%3B similar to many e.g. SYGA_ECOLI glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) (303 aa)%2C fasta scores%3B opt: 1228 z-score: 1442.3 E(): 0%2C 66.1%25 identity in 280 aa overlap. 69.1%25 identity to HP0960. Contains PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2%3B~Updated (2006) note: Pfam domain PF02091 Glycyl-tRNA synthetase alpha subunit identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification;gbkey=CDS;gene=glyQ;inference=protein motif:Prosite:PS00339;locus_tag=Cj0704;product=glycyl-tRNA synthetase alpha chain;protein_id=CAL34841.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	661538	662392	.	+	.	ID=id-Cj0704;Note=HMMPfam hit to PF02091%2C Glycyl-tRNA synthetase alpha subunit%2C score 4.8e-203;gbkey=misc_feature;gene=glyQ;inference=protein motif:Pfam:PF02091;locus_tag=Cj0704
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	662003	662032	.	+	.	ID=id-Cj0704-2;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=glyQ;inference=protein motif:Prosite:PS00339;locus_tag=Cj0704
gi|15791399|ref|NC_002163.1|	EMBL	gene	662382	663107	.	+	.	ID=gene-Cj0705;Name=Cj0705;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0705
gi|15791399|ref|NC_002163.1|	EMBL	CDS	662382	663107	.	+	0	ID=cds-CAL34842.1;Parent=gene-Cj0705;Dbxref=EnsemblGenomes-Gn:Cj0705,EnsemblGenomes-Tr:CAL34842,GOA:Q9PPK2,InterPro:IPR002678,NCBI_GP:CAL34842.1;Name=CAL34842.1;Note=Original (2000) note: Cj0705%2C unknown%2C len: 241 aa%3B similar to hypothetical proteins e.g. TR:O51424 (EMBL:AE001151) Borrelia burgdorferi BB0468 (248 aa)%2Cfasta scores%3B opt: 240 z-score: 292.4 E(): 5.5e-09%2C 27.0%25 identity in 244 aa overlap. 42.7%25 identity to HP0959%3B~Updated (2006) note: Pfam domain PF01784 NIF3 (NGG1p interacting factor 3) identified within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01784;locus_tag=Cj0705;product=conserved hypothetical protein Cj0705;protein_id=CAL34842.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	662409	663083	.	+	.	ID=id-Cj0705;Note=HMMPfam hit to PF01784%2C NIF3 (NGG1p interacting factor 3)%2C score 3.6e-81;gbkey=misc_feature;inference=protein motif:Pfam:PF01784;locus_tag=Cj0705
gi|15791399|ref|NC_002163.1|	EMBL	gene	663117	663833	.	+	.	ID=gene-Cj0706;Name=Cj0706;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0706
gi|15791399|ref|NC_002163.1|	EMBL	CDS	663117	663833	.	+	0	ID=cds-CAL34843.1;Parent=gene-Cj0706;Dbxref=EnsemblGenomes-Gn:Cj0706,EnsemblGenomes-Tr:CAL34843,GOA:Q0PAH3,InterPro:IPR003743,UniProtKB/TrEMBL:Q0PAH3,NCBI_GP:CAL34843.1;Name=CAL34843.1;Note=Original (2000) note: Cj0706%2C unknown%2C len: 238 aa%3B similar to hypothetical proteins e.g. TR:O67273 (EMBL:AE000729) Aquifex aeolicus AQ_1223 (235 aa)%2C fasta scores%3B opt: 298 z-score: 287.3 E(): 1.1e-08%2C 30.1%25 identity in 236 aa overlap. 37.4%25 identity to HP0958%3B~Updated (2006) note: Pfam domain PF02591 Uncharacterized ACR%2C COG1579 identified within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02591;locus_tag=Cj0706;product=conserved hypothetical protein Cj0706;protein_id=CAL34843.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	663117	663818	.	+	.	ID=id-Cj0706;Note=HMMPfam hit to PF02591%2C Uncharacterized ACR%2CCOG1579%2C score 8.4e-50;gbkey=misc_feature;inference=protein motif:Pfam:PF02591;locus_tag=Cj0706
gi|15791399|ref|NC_002163.1|	EMBL	gene	663830	664987	.	+	.	ID=gene-Cj0707;Name=kdtA;gbkey=Gene;gene=kdtA;gene_biotype=protein_coding;locus_tag=Cj0707
gi|15791399|ref|NC_002163.1|	EMBL	CDS	663830	664987	.	+	0	ID=cds-CAL34844.1;Parent=gene-Cj0707;Dbxref=EnsemblGenomes-Gn:Cj0707,EnsemblGenomes-Tr:CAL34844,GOA:Q0PAH2,InterPro:IPR007507,UniProtKB/TrEMBL:Q0PAH2,NCBI_GP:CAL34844.1;Name=CAL34844.1;Note=Original (2000) note: Cj0707%2C kdtA%2C probable 3-deoxy-D-manno-octulosonic-acid transferase%2C len: 385 aa%3B similar to many e.g. KDTA_ECOLI 3-deoxy-D-manno-octulosonic-acid transferase (425 aa)%2Cfasta scores%3B opt: 186 z-score: 218.1 E(): 7.5e-05%2C 31.0%25 identity in 339 aa overlap. 45.7%25 identity to HP0957%3B~Updated (2006) note: Pfam domain PF04413 3-Deoxy-D-manno-octulosonic-acid transferase identified within CDS. Also two probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Putative not added to product function. Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:10952982%2C PMID:1577828%2C PMID:7499229;gbkey=CDS;gene=kdtA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0707;product=3-deoxy-D-manno-octulosonic-acid transferase;protein_id=CAL34844.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	663839	663907	.	+	.	ID=id-Cj0707;Note=2 probable transmembrane helices predicted for Cj0707 by TMHMM2.0 at aa 4-26 and 111-130;gbkey=misc_feature;gene=kdtA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0707;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	664160	664219	.	+	.	ID=id-Cj0707;Note=2 probable transmembrane helices predicted for Cj0707 by TMHMM2.0 at aa 4-26 and 111-130;gbkey=misc_feature;gene=kdtA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0707;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	663917	664444	.	+	.	ID=id-Cj0707-2;Note=HMMPfam hit to PF04413%2C3-Deoxy-D-manno-octulosonic-acid tran%2C score 7.3e-80;gbkey=misc_feature;gene=kdtA;inference=protein motif:Pfam:PF04413;locus_tag=Cj0707
gi|15791399|ref|NC_002163.1|	EMBL	gene	664968	665720	.	+	.	ID=gene-Cj0708;Name=Cj0708;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0708
gi|15791399|ref|NC_002163.1|	EMBL	CDS	664968	665720	.	+	0	ID=cds-CAL34845.1;Parent=gene-Cj0708;Dbxref=EnsemblGenomes-Gn:Cj0708,EnsemblGenomes-Tr:CAL34845,GOA:Q0PAH1,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR020103,UniProtKB/TrEMBL:Q0PAH1,NCBI_GP:CAL34845.1;Name=CAL34845.1;Note=Original (2000) note: Cj0708%2C possible ribosomal pseudouridine synthase%2C len: 250 aa%3B similar to many hypothetical proteins and to e.g. RLUC_ECOLI ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) (319 aa)%2C fasta scores%3B opt: 202 z-score: 252.9 E(): 8.6e-07%2C29.7%25 identity in 175 aa overlap. 47.0%25 identity to HP0956. Contains PS01129 Hypothetical yabO/yceC/sfhB family signature and Pfam match to entry PF00849 YABO%2CHypothetical yabO/yceC/sfhB family. Also similar to Cj1280c (26.9%25 identity in 223 aa overlap) and Cj0022c (27.6%25 identity in 275 aa overlap)%3B~Updated (2006) note: Pfam domain now updated to RNA pseudouridylate synthase. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Ribosome maturation and modification%3B~PMID:10089432;gbkey=CDS;inference=protein motif:Prosite:PS01129;locus_tag=Cj0708;product=putative ribosomal pseudouridine synthase;protein_id=CAL34845.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	665160	665558	.	+	.	ID=id-Cj0708;Note=HMMPfam hit to PF00849%2C RNA pseudouridylate synthase%2C score 1.7e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF00849;locus_tag=Cj0708
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	665232	665276	.	+	.	ID=id-Cj0708-2;Note=PS01129 Rlu family of pseudouridine synthase signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01129;locus_tag=Cj0708
gi|15791399|ref|NC_002163.1|	EMBL	gene	665788	667125	.	+	.	ID=gene-Cj0709;Name=ffh;gbkey=Gene;gene=ffh;gene_biotype=protein_coding;locus_tag=Cj0709
gi|15791399|ref|NC_002163.1|	EMBL	CDS	665788	667125	.	+	0	ID=cds-CAL34846.1;Parent=gene-Cj0709;Dbxref=EnsemblGenomes-Gn:Cj0709,EnsemblGenomes-Tr:CAL34846,GOA:Q0PAH0,InterPro:IPR000897,InterPro:IPR003593,InterPro:IPR004125,InterPro:IPR004780,InterPro:IPR013822,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAH0,NCBI_GP:CAL34846.1;Name=CAL34846.1;Note=Original (2000) note: Cj0709%2C ffh%2C probable signal recognition particle protein%2C len: 445 aa%3B highly similar to many e.g. SR54_ECOLI signal recognition particle protein (453 aa)%2C fasta scores%3B opt: 1136 z-score: 1195.2 E(): 0%2C 41.5%25 identity in 441 aa overlap. 61.0%25 identity to HP1152. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00300 SRP54-type proteins GTP-binding domain signature%2C and Pfam match to entry PF00448 SRP54%2CSRP54-type protein%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Protein and peptide secretion%3B~PMID:1331806%2C PMID:11976293;gbkey=CDS;gene=ffh;inference=protein motif:Prosite:PS00300;locus_tag=Cj0709;product=signal recognition particle protein;protein_id=CAL34846.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	665791	666027	.	+	.	ID=id-Cj0709;Note=HMMPfam hit to PF02881%2C SRP54-type protein%2C helical bundle domain%2C score 2.4e-08;gbkey=misc_feature;gene=ffh;inference=protein motif:Pfam:PF02881;locus_tag=Cj0709
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	666067	666657	.	+	.	ID=id-Cj0709-2;Note=HMMPfam hit to PF00448%2C SRP54-type protein%2C GTPase domain%2C score 9.5e-103;gbkey=misc_feature;gene=ffh;inference=protein motif:Pfam:PF00448;locus_tag=Cj0709
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	666091	666114	.	+	.	ID=id-Cj0709-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ffh;inference=protein motif:Prosite:PS00017;locus_tag=Cj0709
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	666574	666615	.	+	.	ID=id-Cj0709-4;Note=PS00300 SRP54-type proteins GTP-binding domain signature;gbkey=misc_feature;gene=ffh;inference=protein motif:Prosite:PS00300;locus_tag=Cj0709
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	666748	667053	.	+	.	ID=id-Cj0709-5;Note=HMMPfam hit to PF02978%2C Signal peptide binding domain%2C score 4.4e-45;gbkey=misc_feature;gene=ffh;inference=protein motif:Pfam:PF02978;locus_tag=Cj0709
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	667124	667169	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:667124..667169;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	667190	667417	.	+	.	ID=gene-Cj0710;Name=rpsP;gbkey=Gene;gene=rpsP;gene_biotype=protein_coding;locus_tag=Cj0710
gi|15791399|ref|NC_002163.1|	EMBL	CDS	667190	667417	.	+	0	ID=cds-CAL34847.1;Parent=gene-Cj0710;Dbxref=EnsemblGenomes-Gn:Cj0710,EnsemblGenomes-Tr:CAL34847,GOA:Q9PPJ7,InterPro:IPR000307,InterPro:IPR020592,InterPro:IPR023803,NCBI_GP:CAL34847.1;Name=CAL34847.1;Note=Original (2000) note: Cj0710%2C rpsP%2C 30S ribosomal protein S16%2C len: 75 aa%3B highly similar to many e.g. RS16_ECOLI 30S ribosomal protein S16 (82 aa)%2C fasta scores%3B opt: 238 z-score: 352.6 E(): 2.4e-12%2C 45.9%25 identity in 74 aa overlap. 73.3%25 identity to HP1151. Contains PS00732 Ribosomal protein S16 signature%2C and Pfam match to entry PF00886 Ribosomal_S16%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:336510;gbkey=CDS;gene=rpsP;inference=protein motif:Prosite:PS00732;locus_tag=Cj0710;product=30S ribosomal protein S16;protein_id=CAL34847.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	667193	667222	.	+	.	ID=id-Cj0710;Note=PS00732 Ribosomal protein S16 signature;gbkey=misc_feature;gene=rpsP;inference=protein motif:Prosite:PS00732;locus_tag=Cj0710
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	667211	667387	.	+	.	ID=id-Cj0710-2;Note=HMMPfam hit to PF00886%2C Ribosomal protein S16%2Cscore 5.6e-33;gbkey=misc_feature;gene=rpsP;inference=protein motif:Pfam:PF00886;locus_tag=Cj0710
gi|15791399|ref|NC_002163.1|	EMBL	gene	667420	667662	.	+	.	ID=gene-Cj0711;Name=Cj0711;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0711
gi|15791399|ref|NC_002163.1|	EMBL	CDS	667420	667662	.	+	0	ID=cds-CAL34848.1;Parent=gene-Cj0711;Dbxref=EnsemblGenomes-Gn:Cj0711,EnsemblGenomes-Tr:CAL34848,GOA:Q0PAG8,InterPro:IPR009019,UniProtKB/TrEMBL:Q0PAG8,NCBI_GP:CAL34848.1;Name=CAL34848.1;Note=Original (2000) note: Cj0711%2C unknown%2C len: 80 aa%3B simlar to small hypothetical proteins downstream of rpsP in many organisms e.g. TR:O31738 (EMBL:Z99112) Bacillus subtilis YLQC (81 aa)%2C fasta scores%3B opt: 115 z-score: 178.5 E(): 0.012%2C 32.3%25 identity in 62 aa overlap. 37.7%25 identity to HP1150. Functional classification - Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0711;product=hypothetical protein Cj0711;protein_id=CAL34848.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	667655	668194	.	+	.	ID=gene-Cj0712;Name=rimM;gbkey=Gene;gene=rimM;gene_biotype=protein_coding;locus_tag=Cj0712
gi|15791399|ref|NC_002163.1|	EMBL	CDS	667655	668194	.	+	0	ID=cds-CAL34849.1;Parent=gene-Cj0712;Dbxref=EnsemblGenomes-Gn:Cj0712,EnsemblGenomes-Tr:CAL34849,GOA:Q9PPJ5,InterPro:IPR002676,InterPro:IPR009000,InterPro:IPR011033,InterPro:IPR011961,InterPro:IPR027275,NCBI_GP:CAL34849.1;Name=CAL34849.1;Note=Original (2000) note: Cj0712%2C rimM%2C possible 16S rRNA processing protein%2C len: 179 aa%3B similar to e.g. RIMM_ECOLI 16S rRNA processing protein RIMM (185 aa)%2Cfasta scores%3B opt: 202 z-score: 255.1 E(): 6.6e-07%2C 24.1%25 identity in 174 aa overlap. 37.8%25 identity to HP1149%3B~Updated (2006) note: Pfam domains PF01782 RimM N-terminal domain and PF05239 PRC-barrel domain were identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative kept within product function. Functional classification - Ribosome maturation and modification%3B~PMID:9422595;gbkey=CDS;gene=rimM;inference=protein motif:Pfam:PF05239;locus_tag=Cj0712;product=putative 16S rRNA processing protein;protein_id=CAL34849.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	667676	667912	.	+	.	ID=id-Cj0712;Note=HMMPfam hit to PF01782%2C RimM N-terminal domain%2Cscore 2.2e-20;gbkey=misc_feature;gene=rimM;inference=protein motif:Pfam:PF01782;locus_tag=Cj0712
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	667937	668179	.	+	.	ID=id-Cj0712-2;Note=HMMPfam hit to PF05239%2C PRC-barrel domain%2C score 1.2e-15;gbkey=misc_feature;gene=rimM;inference=protein motif:Pfam:PF05239;locus_tag=Cj0712
gi|15791399|ref|NC_002163.1|	EMBL	gene	668191	668895	.	+	.	ID=gene-Cj0713;Name=trmD;gbkey=Gene;gene=trmD;gene_biotype=protein_coding;locus_tag=Cj0713
gi|15791399|ref|NC_002163.1|	EMBL	CDS	668191	668895	.	+	0	ID=cds-CAL34850.1;Parent=gene-Cj0713;Dbxref=EnsemblGenomes-Gn:Cj0713,EnsemblGenomes-Tr:CAL34850,GOA:Q9PPJ4,InterPro:IPR002649,InterPro:IPR016009,InterPro:IPR023148,InterPro:IPR029026,InterPro:IPR029028,NCBI_GP:CAL34850.1;Name=CAL34850.1;Note=Original (2000) note: Cj0713%2C trmD%2C probable tRNA (guanine-N1)-methyltransferase%2C len: 234 aa%3B similar to many e.g. TRMD_ECOLI tRNA (guanine-N1)-methyltransferase (EC 2.1.1.31) (255 aa)%2C fasta scores%3B opt: 541 z-score: 674.0 E(): 3e-30%2C 34.6%25 identity in 228 aa overlap. 53.7%25 identity to HP1148%3B~Updated (2006) note: Pfam domains PF01746 tRNA (Guanine-1)-methyltransferase was identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification;gbkey=CDS;gene=trmD;inference=protein motif:Pfam:PF01746;locus_tag=Cj0713;product=tRNA (guanine-N1)-methyltransferase;protein_id=CAL34850.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	668254	668892	.	+	.	ID=id-Cj0713;Note=HMMPfam hit to PF01746%2C tRNA (Guanine-1)-methyltransferase%2C score 1.3e-82;gbkey=misc_feature;gene=trmD;inference=protein motif:Pfam:PF01746;locus_tag=Cj0713
gi|15791399|ref|NC_002163.1|	EMBL	gene	668906	669262	.	+	.	ID=gene-Cj0714;Name=rplS;gbkey=Gene;gene=rplS;gene_biotype=protein_coding;locus_tag=Cj0714
gi|15791399|ref|NC_002163.1|	EMBL	CDS	668906	669262	.	+	0	ID=cds-CAL34851.1;Parent=gene-Cj0714;Dbxref=EnsemblGenomes-Gn:Cj0714,EnsemblGenomes-Tr:CAL34851,GOA:Q9PPJ3,InterPro:IPR001857,InterPro:IPR008991,InterPro:IPR018257,NCBI_GP:CAL34851.1;Name=CAL34851.1;Note=Original (2000) note: Cj0714%2C rplS%2C 50S ribosomal protein L19%2C len: 118 aa%3B highly similar to many e.g. RL19_ECOLI 50S ribosomal protein L19 (114 aa)%2C fasta scores%3B opt: 362 z-score: 475.0 E(): 3.7e-19%2C 51.8%25 identity in 110 aa overlap. 71.8%25 identity to HP1147. Contains Pfam match to entry PF01245 Ribosomal_L19%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:339951;gbkey=CDS;gene=rplS;inference=protein motif:Pfam:PF01245;locus_tag=Cj0714;product=50S ribosomal protein L19;protein_id=CAL34851.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	668912	669256	.	+	.	ID=id-Cj0714;Note=HMMPfam hit to PF01245%2C Ribosomal protein L19%2Cscore 5.1e-63;gbkey=misc_feature;gene=rplS;inference=protein motif:Pfam:PF01245;locus_tag=Cj0714
gi|15791399|ref|NC_002163.1|	EMBL	gene	669395	669808	.	+	.	ID=gene-Cj0715;Name=Cj0715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0715
gi|15791399|ref|NC_002163.1|	EMBL	CDS	669395	669808	.	+	0	ID=cds-CAL34852.1;Parent=gene-Cj0715;Dbxref=EnsemblGenomes-Gn:Cj0715,EnsemblGenomes-Tr:CAL34852,GOA:Q0PAG4,InterPro:IPR000895,InterPro:IPR014306,InterPro:IPR023416,InterPro:IPR023418,InterPro:IPR023419,UniProtKB/TrEMBL:Q0PAG4,NCBI_GP:CAL34852.1;Name=CAL34852.1;Note=Original (2000) note: Cj0715%2C transthyretin-like periplasmic protein%2C len: 137 aa%3B similar to members of the transthyretin family e.g. YEDX_ECOLI hypothetical transthyretin-like protein precursor (137 aa)%2C fasta scores%3B opt: 305 z-score: 409.7 E(): 1.6e-15%2C 38.9%25 identity in 126 aa overlap%2C and TTHY_BOVIN Cow transthyretin precursor (prealbumin) (147 aa)%2C fasta scores%3B opt: 205 z-score: 279.8 E(): 2.8e-08%2C 33.8%25 identity in 142 aa overlap. No Hp match. Contains Pfam match to entry PF00576 Transthyretin and probable N-terminal signal sequence%3B~Updated (2006) note: Prosite domains PS00768 TRANSTHYRETIN_1%2C Transthyretin and PS00769 TRANSTHYRETIN_2%2C Transthyretin were identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet. Product function unchanged. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:12186869;gbkey=CDS;inference=protein motif:Prosite:PS00769;locus_tag=Cj0715;product=transthyretin-like periplasmic protein;protein_id=CAL34852.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	669461	669802	.	+	.	ID=id-Cj0715;Note=HMMPfam hit to PF00576%2C Transthyretin precursor (formerly preal%2C score 7.3e-62;gbkey=misc_feature;inference=protein motif:Pfam:PF00576;locus_tag=Cj0715
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	669476	669523	.	+	.	ID=id-Cj0715-2;Note=PS00768 Transthyretin signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00768;locus_tag=Cj0715
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	669752	669790	.	+	.	ID=id-Cj0715-3;Note=PS00769 Transthyretin signature 2;gbkey=misc_feature;inference=protein motif:Prosite:PS00769;locus_tag=Cj0715
gi|15791399|ref|NC_002163.1|	EMBL	gene	669832	671172	.	+	.	ID=gene-Cj0716;Name=Cj0716;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0716
gi|15791399|ref|NC_002163.1|	EMBL	CDS	669832	671172	.	+	0	ID=cds-CAL34853.1;Parent=gene-Cj0716;Dbxref=EnsemblGenomes-Gn:Cj0716,EnsemblGenomes-Tr:CAL34853,GOA:Q0PAG3,InterPro:IPR002480,UniProtKB/TrEMBL:Q0PAG3,NCBI_GP:CAL34853.1;Name=CAL34853.1;Note=Original (2000) note: Cj0716%2C probable phospho-2-dehydro-3-deoxyheptonate aldolase%2C len: 446 aa%3B similar to enzymes from plants e.g. AROF_ARATH phospho-2-dehydro-3-deoxyheptonate aldolase (EC 4.1.2.15) (525 aa)%2C fasta scores%3B opt: 1680 z-score: 1935.9 E(): 0%2C54.2%25 identity in 445 aa overlap. 59.6%25 identity to HP0134%3B~Updated (2006) note: Pfam domain PF01474 Class-II DAHP synthetase family identified within CDS. Product function kept the same (along with putative)%2C as no specific characterisation within related bacteria has been carried out. Functional classification - Amino acid biosynthesis - Aromatic amino acid family;gbkey=CDS;inference=protein motif:Pfam:PF01474;locus_tag=Cj0716;product=putative phospho-2-dehydro-3-deoxyheptonate aldolase;protein_id=CAL34853.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	669832	671145	.	+	.	ID=id-Cj0716;Note=HMMPfam hit to PF01474%2C Class-II DAHP synthetase family%2C score 8.4e-246;gbkey=misc_feature;inference=protein motif:Pfam:PF01474;locus_tag=Cj0716
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	670093	670125	.	+	.	ID=id-Cj0716-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0716
gi|15791399|ref|NC_002163.1|	EMBL	gene	671169	671498	.	+	.	ID=gene-Cj0717;Name=Cj0717;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0717
gi|15791399|ref|NC_002163.1|	EMBL	CDS	671169	671498	.	+	0	ID=cds-CAL34854.1;Parent=gene-Cj0717;Dbxref=EnsemblGenomes-Gn:Cj0717,EnsemblGenomes-Tr:CAL34854,InterPro:IPR006660,InterPro:IPR012336,UniProtKB/TrEMBL:Q0PAG2,NCBI_GP:CAL34854.1;Name=CAL34854.1;Note=Original (2000) note: Cj0717%2C unknown%2C len: aa%3B similar to hypothetical proteins e.g. YFFB_ECOLI (118 aa)%2Cfasta scores%3B opt: 164 z-score: 215.8 E(): 0.0001%2C 32.3%25 identity in 93 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03960 ArsC family identified within CDS. Product modified to more specific family member due to motif match. ArsC is thought to catalyze the reduction of arsenate to arsenite. No specific characterisation has been carried out. Putative kept within product function. Functional classification -Misc%3B~PMID:1704144;gbkey=CDS;inference=protein motif:Pfam:PF03960;locus_tag=Cj0717;product=putative ArsC family protein;protein_id=CAL34854.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	671178	671489	.	+	.	ID=id-Cj0717;Note=HMMPfam hit to PF03960%2C ArsC family%2C score 6.9e-34;gbkey=misc_feature;inference=protein motif:Pfam:PF03960;locus_tag=Cj0717
gi|15791399|ref|NC_002163.1|	EMBL	gene	671946	675548	.	+	.	ID=gene-Cj0718;Name=dnaE;gbkey=Gene;gene=dnaE;gene_biotype=protein_coding;locus_tag=Cj0718
gi|15791399|ref|NC_002163.1|	EMBL	CDS	671946	675548	.	+	0	ID=cds-CAL34855.1;Parent=gene-Cj0718;Dbxref=EnsemblGenomes-Gn:Cj0718,EnsemblGenomes-Tr:CAL34855,GOA:Q9PPI9,InterPro:IPR003141,InterPro:IPR004013,InterPro:IPR004805,InterPro:IPR011708,InterPro:IPR016195,InterPro:IPR029460,NCBI_GP:CAL34855.1;Name=CAL34855.1;Note=Original (2000) note: Cj0718%2C dnaE%2C probable DNA polymerase III%2C alpha chain%2C len: 1200 aa%3B similar to many e.g. DP3A_ECOLI DNA polymerase III%2C alpha chain (EC 2.7.7.7) (1160 aa)%2C fasta scores%3B opt: 2115 z-score: 2263.1 E(): 0%2C 40.6%25 identity in 1087 aa overlap. 52.7%25 identity to HP1460%3B~Updated (2006) note: Pfam domain PF07733 Bacterial DNA polymerase III alpha subunit identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:8375647;gbkey=CDS;gene=dnaE;inference=protein motif:Pfam:PF07733;locus_tag=Cj0718;product=DNA polymerase III%2C alpha chain;protein_id=CAL34855.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	671958	672155	.	+	.	ID=id-Cj0718;Note=HMMPfam hit to PF02231%2C PHP domain N-terminal region%2C score 4.7e-29;gbkey=misc_feature;gene=dnaE;inference=protein motif:Pfam:PF02231;locus_tag=Cj0718
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	672192	672614	.	+	.	ID=id-Cj0718-2;Note=HMMPfam hit to PF02811%2C PHP domain C-terminal region%2C score 1.6e-34;gbkey=misc_feature;gene=dnaE;inference=protein motif:Pfam:PF02811;locus_tag=Cj0718
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	672693	674204	.	+	.	ID=id-Cj0718-3;Note=HMMPfam hit to PF07733%2C Bacterial DNA polymerase III alpha sub%2C score 2.2e-295;gbkey=misc_feature;gene=dnaE;inference=protein motif:Pfam:PF07733;locus_tag=Cj0718
gi|15791399|ref|NC_002163.1|	EMBL	gene	675560	676192	.	-	.	ID=gene-Cj0719c;Name=Cj0719c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0719c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	675560	676192	.	-	0	ID=cds-CAL34856.1;Parent=gene-Cj0719c;Dbxref=EnsemblGenomes-Gn:Cj0719c,EnsemblGenomes-Tr:CAL34856,InterPro:IPR001608,InterPro:IPR011078,InterPro:IPR029066,UniProtKB/TrEMBL:Q0PAG0,NCBI_GP:CAL34856.1;Name=CAL34856.1;Note=Original (2000) note: Cj0719c%2C unknown%2C len: 210 aa%3B similar to hypothetical proteins from many organisms e.g. YGGS_ECOLI (234 aa)%2C fasta scores%3B opt: 307 z-score: 380.4 E(): 6.9e-14%2C 34.0%25 identity in 206 aa overlap. 47.5%25 identity to HP0395. Contains PS01211 Uncharacterized protein family UPF0001 signature and Pfam match to entry PF01168 UPF0001%3B~Updated (2006) note: Pfam domain PF01168 Alanine racemase%2C N-terminal domain identified within CDS. This is an uncharacterised motif that has some conserved regions. Conserved added due to identification of motif. Literature search identified paper giving further information on product function. Functional classification - Conserved hypothetical proteins%3B~PMID:15228533;gbkey=CDS;inference=protein motif:Prosite:PS01211;locus_tag=Cj0719c;product=conserved hypothetical protein Cj0719c;protein_id=CAL34856.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	675566	676192	.	-	.	ID=id-Cj0719c;Note=HMMPfam hit to PF01168%2C Alanine racemase%2CN-terminal domain%2C score 2e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF01168;locus_tag=Cj0719c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	675965	676009	.	-	.	ID=id-Cj0719c-2;Note=PS01211 Uncharacterized protein family UPF0001 signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01211;locus_tag=Cj0719c
gi|15791399|ref|NC_002163.1|	EMBL	gene	676227	676976	.	-	.	ID=gene-Cj0720c;Name=flaC;gbkey=Gene;gene=flaC;gene_biotype=protein_coding;locus_tag=Cj0720c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	676227	676976	.	-	0	ID=cds-CAL34857.1;Parent=gene-Cj0720c;Dbxref=EnsemblGenomes-Gn:Cj0720c,EnsemblGenomes-Tr:CAL34857,GOA:P96747,InterPro:IPR001029,NCBI_GP:CAL34857.1;Name=CAL34857.1;Note=Original (2000) note: Cj0720c%2C flaC%2C flagellin%2Clen: 249 aa%3B 99.6%25 identical to TR:P96747 (EMBL:U85622) C. jejuni flaC%2C and similar to the N-terminus of e.g. FLAB_CAMJE flagellin B (CJ1338) (575 aa)%2C fasta scores%3B opt: 236 z-score: 261.7 E(): 2.8e-07%2C 27.2%25 identity in 202 aa overlap. No Hp ortholog%3B~Updated (2006) note: Pfam domain PF00669 Bacterial flagellin N-terminus identified within CDS. Further support given to product function. Characterised in Campylobacter and Escherichia coli with acceptable identity score. Putative not added to product function. Literature search identified paper linking product function to adhesion and to play an important role in cell adhesion. Functional classification - Surface structures%3B~PMID:15228533%2C PMID:16740937;gbkey=CDS;gene=flaC;inference=protein motif:Pfam:PF00669;locus_tag=Cj0720c;product=flagellin;protein_id=CAL34857.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	676479	676871	.	-	.	ID=id-Cj0720c;Note=HMMPfam hit to PF00669%2C Bacterial flagellin N-terminus%2C score 6.9e-05;gbkey=misc_feature;gene=flaC;inference=protein motif:Pfam:PF00669;locus_tag=Cj0720c
gi|15791399|ref|NC_002163.1|	EMBL	gene	677015	677485	.	-	.	ID=gene-Cj0721c;Name=Cj0721c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0721c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	677015	677485	.	-	0	ID=cds-CAL34858.1;Parent=gene-Cj0721c;Dbxref=EnsemblGenomes-Gn:Cj0721c,EnsemblGenomes-Tr:CAL34858,InterPro:IPR025423,UniProtKB/TrEMBL:Q0PAF8,NCBI_GP:CAL34858.1;Name=CAL34858.1;Note=Original (2000) note: Cj0721c%2C probable integral membrane protein%2C len: 156 aa%3B 35.9%25 identity to HP0288%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0721c;product=putative integral membrane protein. Functional classification-Membranes%2C lipoproteins and porins;protein_id=CAL34858.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	677045	677113	.	-	.	ID=id-Cj0721c;Note=4 probable transmembrane helices predicted for Cj0721c by TMHMM2.0 at aa 7-29%2C 49-68%2C 88-110 and 125-147;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0721c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	677156	677224	.	-	.	ID=id-Cj0721c;Note=4 probable transmembrane helices predicted for Cj0721c by TMHMM2.0 at aa 7-29%2C 49-68%2C 88-110 and 125-147;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0721c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	677282	677341	.	-	.	ID=id-Cj0721c;Note=4 probable transmembrane helices predicted for Cj0721c by TMHMM2.0 at aa 7-29%2C 49-68%2C 88-110 and 125-147;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0721c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	677399	677467	.	-	.	ID=id-Cj0721c;Note=4 probable transmembrane helices predicted for Cj0721c by TMHMM2.0 at aa 7-29%2C 49-68%2C 88-110 and 125-147;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0721c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	gene	677498	678313	.	-	.	ID=gene-Cj0722c;Name=Cj0722c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0722c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	677498	678313	.	-	0	ID=cds-CAL34859.1;Parent=gene-Cj0722c;Dbxref=EnsemblGenomes-Gn:Cj0722c,EnsemblGenomes-Tr:CAL34859,GOA:Q0PAF7,InterPro:IPR002052,InterPro:IPR004556,InterPro:IPR007848,InterPro:IPR029063,UniProtKB/TrEMBL:Q0PAF7,NCBI_GP:CAL34859.1;Name=CAL34859.1;Note=Original (2000) note: Cj0722c%2C probable DNA methylase%2C len: 271 aa%3B similar to members of the hemK family of methylases%2C e.g. HEMK_ECOLI HEMK protein (277 aa)%2C fasta scores%3B opt: 262 z-score: 315.7 E(): 2.7e-10%2C26.1%25 identity in 276 aa overlap. 36.9%25 identity to HP0381. Contains PS00092 N-6 Adenine-specific DNA methylases signature%3B~Updated (2006) note: Prosite domain PS50193 SAM_BIND%2C SAM (and some other nucleotide) binding motif identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification - DNA replication%2C restriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Prosite:PS50193;locus_tag=Cj0722c;product=putative DNA methylase;protein_id=CAL34859.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	677777	677797	.	-	.	ID=id-Cj0722c;Note=PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00092;locus_tag=Cj0722c
gi|15791399|ref|NC_002163.1|	EMBL	gene	678310	679497	.	-	.	ID=gene-Cj0723c;Name=Cj0723c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0723c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	678310	679497	.	-	0	ID=cds-CAL34860.1;Parent=gene-Cj0723c;Dbxref=EnsemblGenomes-Gn:Cj0723c,EnsemblGenomes-Tr:CAL34860,GOA:Q0PAF6,InterPro:IPR001915,InterPro:IPR027057,UniProtKB/TrEMBL:Q0PAF6,NCBI_GP:CAL34860.1;Name=CAL34860.1;Note=Original (2000) note: Cj0723c%2C probable integral membrane zinc-metalloprotease%2C len: 395 aa%3B simimlar to yeast proteases e.g. ST24_YEAST CAAX prenyl protease 1 (453 aa)%2C fasta scores%3B opt: 494 z-score: 565.5 E(): 3.4e-24%2C 31.6%25 identity in 430 aa overlap%2C and to prokaryotic htpX%2C e.g. HTPX_ECOLI heat shock protein HTPX (293 aa)%2C fasta scores%3B opt: 183 z-score: 216.0 E(): 9.9e-05%2C 24.1%25 identity in 295 aa overlap. 38.6%25 identity to HP0382. Contains PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature%3B~Updated (2006) note: Pfam domain PF01435 Peptidase family M48 and Prosite domain PS00142 ZINC_PROTEASE%2CPeptidase M%2C neutral zinc metallopeptidases%2C zinc-binding site were identified within CDS. Also%2C Seven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation carried out yet. Putative kept within product function. Functional classification - Proteins%2Cpeptides and glycopeptides;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0723c;product=putative integral membrane zinc-metalloprotease;protein_id=CAL34860.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	678499	678567	.	-	.	ID=id-Cj0723c;Note=7 probable transmembrane helices predicted for Cj0723c by TMHMM2.0 at aa 4-26%2C 61-83%2C 93-115%2C 138-160%2C164-186%2C 279-301 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0723c;part=1/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	678595	678663	.	-	.	ID=id-Cj0723c;Note=7 probable transmembrane helices predicted for Cj0723c by TMHMM2.0 at aa 4-26%2C 61-83%2C 93-115%2C 138-160%2C164-186%2C 279-301 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0723c;part=2/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	678940	679008	.	-	.	ID=id-Cj0723c;Note=7 probable transmembrane helices predicted for Cj0723c by TMHMM2.0 at aa 4-26%2C 61-83%2C 93-115%2C 138-160%2C164-186%2C 279-301 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0723c;part=3/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	679018	679086	.	-	.	ID=id-Cj0723c;Note=7 probable transmembrane helices predicted for Cj0723c by TMHMM2.0 at aa 4-26%2C 61-83%2C 93-115%2C 138-160%2C164-186%2C 279-301 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0723c;part=4/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	679153	679221	.	-	.	ID=id-Cj0723c;Note=7 probable transmembrane helices predicted for Cj0723c by TMHMM2.0 at aa 4-26%2C 61-83%2C 93-115%2C 138-160%2C164-186%2C 279-301 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0723c;part=5/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	679249	679317	.	-	.	ID=id-Cj0723c;Note=7 probable transmembrane helices predicted for Cj0723c by TMHMM2.0 at aa 4-26%2C 61-83%2C 93-115%2C 138-160%2C164-186%2C 279-301 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0723c;part=6/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	679420	679488	.	-	.	ID=id-Cj0723c;Note=7 probable transmembrane helices predicted for Cj0723c by TMHMM2.0 at aa 4-26%2C 61-83%2C 93-115%2C 138-160%2C164-186%2C 279-301 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0723c;part=7/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	678313	678885	.	-	.	ID=id-Cj0723c-2;Note=HMMPfam hit to PF01435%2C Peptidase family M48%2C score 1.9e-43;gbkey=misc_feature;inference=protein motif:Pfam:PF01435;locus_tag=Cj0723c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	678685	678714	.	-	.	ID=id-Cj0723c-3;Note=PS00142 Neutral zinc metallopeptidases%2Czinc-binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00142;locus_tag=Cj0723c
gi|15791399|ref|NC_002163.1|	EMBL	gene	679624	679809	.	+	.	ID=gene-Cj0724;Name=Cj0724;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0724
gi|15791399|ref|NC_002163.1|	EMBL	CDS	679624	679809	.	+	0	ID=cds-CAL34861.1;Parent=gene-Cj0724;Dbxref=EnsemblGenomes-Gn:Cj0724,EnsemblGenomes-Tr:CAL34861,UniProtKB/TrEMBL:Q0PAF5,NCBI_GP:CAL34861.1;Name=CAL34861.1;Note=Original (2000) note: Cj0724%2C unknown%2C len: 61 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0724;product=hypothetical protein Cj0724;protein_id=CAL34861.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	679806	680348	.	-	.	ID=gene-Cj0725c;Name=Cj0725c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0725c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	679806	680348	.	-	0	ID=cds-CAL34862.1;Parent=gene-Cj0725c;Dbxref=EnsemblGenomes-Gn:Cj0725c,EnsemblGenomes-Tr:CAL34862,GOA:Q0PAF4,InterPro:IPR001453,InterPro:IPR020817,UniProtKB/TrEMBL:Q0PAF4,NCBI_GP:CAL34862.1;Name=CAL34862.1;Note=Original (2000) note: Cj0725c%2C mog%2C probable molybdopterin biosynthesis protein%2C len: 180 aa%3B similar to e.g. MOG_ECOLI molybdopterin biosynthesis MOG protein (195 aa)%2C fasta scores%3B opt: 506 z-score: 615.6 E(): 5.5e-27%2C 50.8%25 identity in 187 aa overlap. 65.3%25 identity to HP0799%3B~Updated (2006) note: Pfam domain PF00994 Probable molybdopterin binding domain found within CDS. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Molybdopterin%3B~PMID:12006571;gbkey=CDS;inference=protein motif:Pfam:PF00994;locus_tag=Cj0725c;product=molybdopterin biosynthesis protein;protein_id=CAL34862.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	679911	680339	.	-	.	ID=id-Cj0725c;Note=HMMPfam hit to PF00994%2C Probable molybdopterin binding domain%2C score 6.3e-45;gbkey=misc_feature;inference=protein motif:Pfam:PF00994;locus_tag=Cj0725c
gi|15791399|ref|NC_002163.1|	EMBL	gene	680369	681352	.	-	.	ID=gene-Cj0726c;Name=corA;gbkey=Gene;gene=corA;gene_biotype=protein_coding;locus_tag=Cj0726c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	680369	681352	.	-	0	ID=cds-CAL34863.1;Parent=gene-Cj0726c;Dbxref=EnsemblGenomes-Gn:Cj0726c,EnsemblGenomes-Tr:CAL34863,GOA:Q9PPI1,InterPro:IPR002523,InterPro:IPR004488,NCBI_GP:CAL34863.1;Name=CAL34863.1;Note=Original (2000) note: Cj0726c%2C corA%2C probable magnesium and cobalt transport protein%2C len: 327 aa%3B similar to e.g. CORA_ECOLI magnesium and cobalt transport protein CORA (316 aa)%2C fasta scores%3B opt: 559 z-score: 616.2 E(): 5.1e-27%2C 31.3%25 identity in 329 aa overlap. 49.4%25 identity to HP1344%3B~Updated (2006) note: Pfam domain PF01544 CorA-like Mg2+ transporter protein identified within CDS. Also%2C two probable transmembrane helices predicted for TMHMM2.0. Further support given to product function. Characterised within Escherichia coli and Salmonella typhimurium with marginal identity scores. Putative not added to product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:1779764%2C PMID:9775386;gbkey=CDS;gene=corA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0726c;product=magnesium and cobalt transport protein;protein_id=CAL34863.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	680390	680458	.	-	.	ID=id-Cj0726c;Note=2 probable transmembrane helices predicted for Cj0726c by TMHMM2.0 at aa 267-289 and 299-321;gbkey=misc_feature;gene=corA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0726c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	680486	680554	.	-	.	ID=id-Cj0726c;Note=2 probable transmembrane helices predicted for Cj0726c by TMHMM2.0 at aa 267-289 and 299-321;gbkey=misc_feature;gene=corA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0726c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	680372	681277	.	-	.	ID=id-Cj0726c-2;Note=HMMPfam hit to PF01544%2C CorA-like Mg2+ transporter protein%2C score 1.6e-61;gbkey=misc_feature;gene=corA;inference=protein motif:Pfam:PF01544;locus_tag=Cj0726c
gi|15791399|ref|NC_002163.1|	EMBL	gene	681469	682515	.	+	.	ID=gene-Cj0727;Name=Cj0727;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0727
gi|15791399|ref|NC_002163.1|	EMBL	CDS	681469	682515	.	+	0	ID=cds-CAL34864.1;Parent=gene-Cj0727;Dbxref=EnsemblGenomes-Gn:Cj0727,EnsemblGenomes-Tr:CAL34864,UniProtKB/TrEMBL:Q0PAF2,NCBI_GP:CAL34864.1;Name=CAL34864.1;Note=Original (2000) note: Cj0727%2C probable periplasmic solute-binding protein%2C len: 348 aa%3B similar to e.g. SUBI_ECOLI sulfate-binding protein precursor (329 aa)%2Cfasta scores%3B opt: 220 z-score: 256.1 E(): 5.8e-07%2C 25.0%25 identity in 220 aa overlap. No Hp match. Contains N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF01547 Bacterial extracellular solute-binding protein identified within CDS. Further support given to product function. Characterised within Escherichia coli%2C however%2C identity scores were unnacceptable. Putative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:Pfam:PF01547;locus_tag=Cj0727;product=putative periplasmic solute-binding protein;protein_id=CAL34864.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	681487	682323	.	+	.	ID=id-Cj0727;Note=HMMPfam hit to PF01547%2C Bacterial extracellular solute-binding prot%2C score 0.0028;gbkey=misc_feature;inference=protein motif:Pfam:PF01547;locus_tag=Cj0727
gi|15791399|ref|NC_002163.1|	EMBL	gene	682526	683851	.	+	.	ID=gene-Cj0728;Name=Cj0728;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0728
gi|15791399|ref|NC_002163.1|	EMBL	CDS	682526	683851	.	+	0	ID=cds-CAL34865.1;Parent=gene-Cj0728;Dbxref=EnsemblGenomes-Gn:Cj0728,EnsemblGenomes-Tr:CAL34865,InterPro:IPR027372,UniProtKB/TrEMBL:Q0PAF1,NCBI_GP:CAL34865.1;Name=CAL34865.1;Note=Original (2000) note: Cj0728%2C probable periplasmic protein%2C len: 441 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0728;product=putative periplasmic protein;protein_id=CAL34865.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	683848	684657	.	+	.	ID=gene-Cj0729;Name=Cj0729;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0729
gi|15791399|ref|NC_002163.1|	EMBL	CDS	683848	684657	.	+	0	ID=cds-CAL34866.1;Parent=gene-Cj0729;Dbxref=EnsemblGenomes-Gn:Cj0729,EnsemblGenomes-Tr:CAL34866,GOA:Q0PAF0,InterPro:IPR002591,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:Q0PAF0,NCBI_GP:CAL34866.1;Name=CAL34866.1;Note=Original (2000) note: Cj0729%2C unknown%2C len: 269 aa%3B no Hp match%3B~Updated (2006) note: Pfam domain PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification - Purines%2Cpyrimidines%2C nucleosides and nucleotides - Miscellaneous nucleoside/nucleotide reactions;gbkey=CDS;inference=protein motif:Pfam:PF01663;locus_tag=Cj0729;product=putative type I phosphodiesterase/nucleotide pyrophosphatase;protein_id=CAL34866.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	684654	685493	.	+	.	ID=gene-Cj0730;Name=Cj0730;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0730
gi|15791399|ref|NC_002163.1|	EMBL	CDS	684654	685493	.	+	0	ID=cds-CAL34867.1;Parent=gene-Cj0730;Dbxref=EnsemblGenomes-Gn:Cj0730,EnsemblGenomes-Tr:CAL34867,GOA:Q0PAE9,InterPro:IPR000515,UniProtKB/TrEMBL:Q0PAE9,NCBI_GP:CAL34867.1;Name=CAL34867.1;Note=Original (2000) note: Cj0730%2C probable ABC transport system permease%2C len: 279 aa%3B similar to members of the binding protein-dependent permease family e.g. UGPA_ECOLI SN-glycerol-3-phosphate transport system permease (295 aa)%2C fasta scores%3B opt: 273 z-score: 324.4 E(): 9.1e-11%2C 25.0%25 identity in 280 aa overlap. No Hp match. Contains Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0730;product=putative ABC transport system permease;protein_id=CAL34867.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	684672	684740	.	+	.	ID=id-Cj0730;Note=6 probable transmembrane helices predicted for Cj0730 by TMHMM2.0 at aa 7-29%2C 66-88%2C 108-130%2C 145-167%2C187-209 and 248-270;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0730;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	684849	684917	.	+	.	ID=id-Cj0730;Note=6 probable transmembrane helices predicted for Cj0730 by TMHMM2.0 at aa 7-29%2C 66-88%2C 108-130%2C 145-167%2C187-209 and 248-270;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0730;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	684975	685043	.	+	.	ID=id-Cj0730;Note=6 probable transmembrane helices predicted for Cj0730 by TMHMM2.0 at aa 7-29%2C 66-88%2C 108-130%2C 145-167%2C187-209 and 248-270;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0730;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	685086	685154	.	+	.	ID=id-Cj0730;Note=6 probable transmembrane helices predicted for Cj0730 by TMHMM2.0 at aa 7-29%2C 66-88%2C 108-130%2C 145-167%2C187-209 and 248-270;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0730;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	685212	685280	.	+	.	ID=id-Cj0730;Note=6 probable transmembrane helices predicted for Cj0730 by TMHMM2.0 at aa 7-29%2C 66-88%2C 108-130%2C 145-167%2C187-209 and 248-270;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0730;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	685395	685463	.	+	.	ID=id-Cj0730;Note=6 probable transmembrane helices predicted for Cj0730 by TMHMM2.0 at aa 7-29%2C 66-88%2C 108-130%2C 145-167%2C187-209 and 248-270;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0730;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	684819	685490	.	+	.	ID=id-Cj0730-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 0.0008;gbkey=misc_feature;inference=protein motif:Pfam:PF00528;locus_tag=Cj0730
gi|15791399|ref|NC_002163.1|	EMBL	gene	685494	686273	.	+	.	ID=gene-Cj0731;Name=Cj0731;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0731
gi|15791399|ref|NC_002163.1|	EMBL	CDS	685494	686273	.	+	0	ID=cds-CAL34868.1;Parent=gene-Cj0731;Dbxref=EnsemblGenomes-Gn:Cj0731,EnsemblGenomes-Tr:CAL34868,GOA:Q0PAE8,InterPro:IPR000515,UniProtKB/TrEMBL:Q0PAE8,NCBI_GP:CAL34868.1;Name=CAL34868.1;Note=Original (2000) note: Cj0731%2C probable ABC transport system permease%2C len: 259 aa%3B similar to members of the binding protein-dependent permease family e.g. POTC_ECOLI spermidine/putrescine transport system permease (264 aa)%2C fasta scores%3B opt: 271 z-score: 337.3 E(): 1.7e-11%2C 24.1%25 identity in 241 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%3B~Updated (2006) note: Seven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0731;product=putative ABC transport system permease;protein_id=CAL34868.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	685527	685595	.	+	.	ID=id-Cj0731;Note=7 probable transmembrane helices predicted for Cj0731 by TMHMM2.0 at aa 12-34%2C 75-97%2C 104-126%2C 131-153%2C165-187%2C 192-214 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0731;part=1/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	685716	685784	.	+	.	ID=id-Cj0731;Note=7 probable transmembrane helices predicted for Cj0731 by TMHMM2.0 at aa 12-34%2C 75-97%2C 104-126%2C 131-153%2C165-187%2C 192-214 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0731;part=2/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	685803	685871	.	+	.	ID=id-Cj0731;Note=7 probable transmembrane helices predicted for Cj0731 by TMHMM2.0 at aa 12-34%2C 75-97%2C 104-126%2C 131-153%2C165-187%2C 192-214 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0731;part=3/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	685884	685952	.	+	.	ID=id-Cj0731;Note=7 probable transmembrane helices predicted for Cj0731 by TMHMM2.0 at aa 12-34%2C 75-97%2C 104-126%2C 131-153%2C165-187%2C 192-214 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0731;part=4/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	685986	686054	.	+	.	ID=id-Cj0731;Note=7 probable transmembrane helices predicted for Cj0731 by TMHMM2.0 at aa 12-34%2C 75-97%2C 104-126%2C 131-153%2C165-187%2C 192-214 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0731;part=5/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	686067	686135	.	+	.	ID=id-Cj0731;Note=7 probable transmembrane helices predicted for Cj0731 by TMHMM2.0 at aa 12-34%2C 75-97%2C 104-126%2C 131-153%2C165-187%2C 192-214 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0731;part=6/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	686196	686264	.	+	.	ID=id-Cj0731;Note=7 probable transmembrane helices predicted for Cj0731 by TMHMM2.0 at aa 12-34%2C 75-97%2C 104-126%2C 131-153%2C165-187%2C 192-214 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0731;part=7/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	685692	686270	.	+	.	ID=id-Cj0731-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 0.0085;gbkey=misc_feature;inference=protein motif:Pfam:PF00528;locus_tag=Cj0731
gi|15791399|ref|NC_002163.1|	EMBL	gene	686277	687266	.	+	.	ID=gene-Cj0732;Name=Cj0732;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0732
gi|15791399|ref|NC_002163.1|	EMBL	CDS	686277	687266	.	+	0	ID=cds-CAL34869.1;Parent=gene-Cj0732;Dbxref=EnsemblGenomes-Gn:Cj0732,EnsemblGenomes-Tr:CAL34869,GOA:Q0PAE7,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR008995,InterPro:IPR013611,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAE7,NCBI_GP:CAL34869.1;Name=CAL34869.1;Note=Original (2000) note: Cj0732%2C probable ABC transport system ATP-binding protein%2C len: 329 aa%3B similar to many e.g. POTA_ECOLI spermidine/putrescine transport ATP-binding protein (378 aa)%2C fasta scores%3B opt: 802 z-score: 857.8 E(): 0%2C 43.2%25 identity in 292 aa overlap. No Hp otholog. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature and Pfam match to entry PF00005 ABC_tran%3B~Updated (2006) note: Similar to more than one species with acceptable identity score. Putative not added to product function. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj0732;product=ABC transport system ATP-binding protein;protein_id=CAL34869.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	686361	686906	.	+	.	ID=id-Cj0732;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 4.1e-70;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj0732
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	686382	686405	.	+	.	ID=id-Cj0732-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0732
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	686676	686720	.	+	.	ID=id-Cj0732-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj0732
gi|15791399|ref|NC_002163.1|	EMBL	gene	687263	687901	.	+	.	ID=gene-Cj0733;Name=Cj0733;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0733
gi|15791399|ref|NC_002163.1|	EMBL	CDS	687263	687901	.	+	0	ID=cds-CAL34870.1;Parent=gene-Cj0733;Dbxref=EnsemblGenomes-Gn:Cj0733,EnsemblGenomes-Tr:CAL34870,GOA:Q0PAE6,InterPro:IPR006383,InterPro:IPR006385,InterPro:IPR023214,UniProtKB/TrEMBL:Q0PAE6,NCBI_GP:CAL34870.1;Name=CAL34870.1;Note=Original (2000) note: Cj0733%2C unknown%2C len: 212 aa%3B some similarity to hypotheical proteins from Actinomycetes e.g. TR:O69629 (EMBL:AL022121) Rv3661 (MTV025.009) (287 aa)%2C fasta scores%3B opt: 264 z-score: 321.7 E(): 1.3e-10%2C28.4%25 identity in 215 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00702 haloacid dehalogenase-like hydrolase identified within CDS. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF00702;locus_tag=Cj0733;product=putative HAD-superfamily hydrolase;protein_id=CAL34870.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	687263	687850	.	+	.	ID=id-Cj0733;Note=HMMPfam hit to PF00702%2C haloacid dehalogenase-like hydrolase%2C score 0.0017;gbkey=misc_feature;inference=protein motif:Pfam:PF00702;locus_tag=Cj0733
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	687518	687547	.	+	.	ID=id-Cj0733-2;Note=PS00215 Mitochondrial energy transfer proteins signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00215;locus_tag=Cj0733
gi|15791399|ref|NC_002163.1|	EMBL	gene	687925	688680	.	-	.	ID=gene-Cj0734c;Name=hisJ;gbkey=Gene;gene=hisJ;gene_biotype=protein_coding;locus_tag=Cj0734c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	687925	688680	.	-	0	ID=cds-CAL34871.1;Parent=gene-Cj0734c;Dbxref=EnsemblGenomes-Gn:Cj0734c,EnsemblGenomes-Tr:CAL34871,GOA:Q46125,InterPro:IPR001638,InterPro:IPR018313,NCBI_GP:CAL34871.1;Name=CAL34871.1;Note=Original (2000) note: Cj0734c%2C hisJ%2C probable histidine-binding protein precursor%2C len: 251 aa%3B almost identical to HISJ_CAMJE histidine-binding protein precursor (256 aa) (88.7%25 identity in 256 aa overlap) and similar to many priplasmic amino-acid binding proteins e.g. HISJ_ECOLI histidine-binding periplasmic protein precursor (260 aa)%2C fasta scores%3B opt: 343 z-score: 390.5 E(): 1.9e-14. 33.5%25 identity in 263 aa overlap. No Hp ortholog. Contains N-terminal signal sequence%2C PS00013 Prokaryotic membrane lipoprotein lipid attachment site%2CPS01039 Bacterial extracellular solute-binding proteins%2Cfamily 3 signature%2C and Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%3B~Updated (2006) note: Characterised in Campylobacter jejuni. Putative not added to product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:9489038%2C PMID:15063560%2C PMID:9395059;gbkey=CDS;gene=hisJ;inference=protein motif:Prosite:PS01039;locus_tag=Cj0734c;product=histidine-binding protein precursor;protein_id=CAL34871.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	687928	688581	.	-	.	ID=id-Cj0734c;Note=HMMPfam hit to PF00497%2C Bacterial extracellular solute-binding prot%2C score 4.4e-67;gbkey=misc_feature;gene=hisJ;inference=protein motif:Pfam:PF00497;locus_tag=Cj0734c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	688477	688518	.	-	.	ID=id-Cj0734c-2;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature;gbkey=misc_feature;gene=hisJ;inference=protein motif:Prosite:PS01039;locus_tag=Cj0734c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	688621	688653	.	-	.	ID=id-Cj0734c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=hisJ;inference=protein motif:Prosite:PS00013;locus_tag=Cj0734c
gi|15791399|ref|NC_002163.1|	EMBL	gene	689007	689726	.	+	.	ID=gene-Cj0735;Name=Cj0735;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0735
gi|15791399|ref|NC_002163.1|	EMBL	CDS	689007	689726	.	+	0	ID=cds-CAL34872.1;Parent=gene-Cj0735;Dbxref=EnsemblGenomes-Gn:Cj0735,EnsemblGenomes-Tr:CAL34872,UniProtKB/TrEMBL:Q0PAE4,NCBI_GP:CAL34872.1;Name=CAL34872.1;Note=Original (2000) note: Cj0735%2C probable periplasmic protein%2C len: 239 aa%3B no Hp match. Similar to N-terminus of Cj0967 (E(): 6.7e-15%2C 34.5%25 identity in 116 aa overlap)%3B similarity continues in downstream CDS Cj0736. Contains probable N-terminal signal sequence%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0735;product=putative periplasmic protein;protein_id=CAL34872.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	689061	689129	.	+	.	ID=id-Cj0735;Note=1 probable transmembrane helix predicted for Cj0735 by TMHMM2.0 at aa 19-41;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0735
gi|15791399|ref|NC_002163.1|	EMBL	gene	689656	691584	.	+	.	ID=gene-Cj0736;Name=Cj0736;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0736
gi|15791399|ref|NC_002163.1|	EMBL	CDS	689656	691584	.	+	0	ID=cds-CAL34873.1;Parent=gene-Cj0736;Dbxref=EnsemblGenomes-Gn:Cj0736,EnsemblGenomes-Tr:CAL34873,UniProtKB/TrEMBL:Q0PAE3,NCBI_GP:CAL34873.1;Name=CAL34873.1;Note=Original (2000) note: Cj0736%2C unknown%2C len: 239 aa%3B no Hp match. Similar to C-terminus of Cj0967(E(): 0%2C 42.3%25 identity in 562 aa overlap)%3B similarity continues from upstream CDS Cj0735%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0736;product=hypothetical protein Cj0736;protein_id=CAL34873.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	691596	692672	.	+	.	ID=gene-Cj0737;Name=Cj0737;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0737
gi|15791399|ref|NC_002163.1|	EMBL	CDS	691596	692672	.	+	0	ID=cds-CAL34874.1;Parent=gene-Cj0737;Dbxref=EnsemblGenomes-Gn:Cj0737,EnsemblGenomes-Tr:CAL34874,InterPro:IPR008638,InterPro:IPR011050,UniProtKB/TrEMBL:Q0PAE2,NCBI_GP:CAL34874.1;Name=CAL34874.1;Note=Original (2000) note: Cj0737%2C probable periplasmic protein%2C len: 358 aa%3B simlar to the N-terminus of HXA3_HAEIN heme:hemopexin-binding protein precursor (hxuA) (917 aa)%2C fasta scores%3B opt: 236 z-score: 251.5 E(): 1e-06%2C 32.8%25 identity in 180 aa overlap%2C and N-terminus of TR:Q48028 H. influenzae adhesin (1477 aa)%2C fasta scores%3B opt: 292 z-score: 307.3 E(): 8.1e-10%2C 28.9%25 identity in 381 aa overlap. No Hp match. Similar in part to Cj0968 and Cj0969%2C probably representing a pseudogene copy of this CDS%3B~Updated (2006) note: Pfam domain PF05860 haemagglutination activity domain identified within CDS. One probable transmembrane helix predicted by TMHMM2.0. Product modified to more specific family member due to motif match. Putative kept as no specific characterisation. Functional classification - Misc;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0737;product=putative haemagglutination activity domain containing protein;protein_id=CAL34874.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	691614	691682	.	+	.	ID=id-Cj0737;Note=1 probable transmembrane helix predicted for Cj0737 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0737
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	691659	692003	.	+	.	ID=id-Cj0737-2;Note=HMMPfam hit to PF05860%2C haemagglutination activity domain%2C score 3.3e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF05860;locus_tag=Cj0737
gi|15791399|ref|NC_002163.1|	EMBL	gene	692726	692890	.	+	.	ID=gene-Cj0738;Name=Cj0738;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0738
gi|15791399|ref|NC_002163.1|	EMBL	CDS	692726	692890	.	+	0	ID=cds-CAL34875.1;Parent=gene-Cj0738;Dbxref=EnsemblGenomes-Gn:Cj0738,EnsemblGenomes-Tr:CAL34875,UniProtKB/TrEMBL:Q0PAE1,NCBI_GP:CAL34875.1;Name=CAL34875.1;Note=Original (2000) note: Cj0738%2C unknown%2C len: 54 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0738;product=hypothetical protein Cj0738;protein_id=CAL34875.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	692878	693051	.	+	.	ID=gene-Cj0739;Name=Cj0739;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0739
gi|15791399|ref|NC_002163.1|	EMBL	CDS	692878	693051	.	+	0	ID=cds-CAL34876.1;Parent=gene-Cj0739;Dbxref=EnsemblGenomes-Gn:Cj0739,EnsemblGenomes-Tr:CAL34876,UniProtKB/TrEMBL:Q0PAE0,NCBI_GP:CAL34876.1;Name=CAL34876.1;Note=Original (2000) note: Cj0739%2C unknown%2C len: 57 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0739;product=hypothetical protein Cj0739;protein_id=CAL34876.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	693048	693212	.	+	.	ID=gene-Cj0740;Name=Cj0740;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0740
gi|15791399|ref|NC_002163.1|	EMBL	CDS	693048	693212	.	+	0	ID=cds-CAL34877.1;Parent=gene-Cj0740;Dbxref=EnsemblGenomes-Gn:Cj0740,EnsemblGenomes-Tr:CAL34877,UniProtKB/TrEMBL:Q0PAD9,NCBI_GP:CAL34877.1;Name=CAL34877.1;Note=Original (2000) note: Cj0740%2C unknown%2C len: 54 aa%3B no Hp match. Functional classification - . Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0740;product=hypothetical protein Cj0740;protein_id=CAL34877.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	693191	694117	.	+	.	ID=gene-Cj0741;Name=Cj0741;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0741
gi|15791399|ref|NC_002163.1|	EMBL	CDS	693191	694117	.	+	0	ID=cds-CAL34878.1;Parent=gene-Cj0741;Dbxref=EnsemblGenomes-Gn:Cj0741,EnsemblGenomes-Tr:CAL34878,UniProtKB/TrEMBL:Q0PAD8,NCBI_GP:CAL34878.1;Name=CAL34878.1;Note=Original (2000) note: Cj0741%2C unknown%2C len: 308 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0741;product=hypothetical protein Cj0741;protein_id=CAL34878.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	694230	695922	.	+	.	ID=gene-Cj0742;Name=Cj0742;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Cj0742;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	694230	694694	.	+	0	ID=cds-Cj0742;Parent=gene-Cj0742;Note=Original (2000) note: Cj0742%2C probable outer membrane protein pseudogene%2C len: 1567 bp%3B similar to parts of Cj0975 (H. inf. hxuB-like). No Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity scores. Thus%2C putative kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj0742;product=pseudogene (putative outer membrane protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	694694	694936	.	+	0	ID=cds-Cj0742;Parent=gene-Cj0742;Note=Original (2000) note: Cj0742%2C probable outer membrane protein pseudogene%2C len: 1567 bp%3B similar to parts of Cj0975 (H. inf. hxuB-like). No Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity scores. Thus%2C putative kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj0742;product=pseudogene (putative outer membrane protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	694939	695922	.	+	0	ID=cds-Cj0742;Parent=gene-Cj0742;Note=Original (2000) note: Cj0742%2C probable outer membrane protein pseudogene%2C len: 1567 bp%3B similar to parts of Cj0975 (H. inf. hxuB-like). No Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity scores. Thus%2C putative kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj0742;product=pseudogene (putative outer membrane protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	rRNA	696424	697936	.	+	.	ID=rna-gi|15791399|ref|NC_002163.1|:696424..697936;gbkey=rRNA;product=16S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	696424	697936	.	+	.	ID=exon-gi|15791399|ref|NC_002163.1|:696424..697936-1;Parent=rna-gi|15791399|ref|NC_002163.1|:696424..697936;gbkey=rRNA;product=16S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	gene	698041	698116	.	+	.	ID=gene-tRNA-Ala-3;Name=tRNA-Ala;gbkey=Gene;gene=tRNA-Ala;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	698041	698116	.	+	.	ID=rna-tRNA-Ala-3;Parent=gene-tRNA-Ala-3;Note=tRNA Ala anticodon TGC%2C Cove score 92.14;gbkey=tRNA;gene=tRNA-Ala;product=tRNA-Ala
gi|15791399|ref|NC_002163.1|	EMBL	exon	698041	698116	.	+	.	ID=exon-tRNA-Ala-3-1;Parent=rna-tRNA-Ala-3;Note=tRNA Ala anticodon TGC%2C Cove score 92.14;gbkey=tRNA;gene=tRNA-Ala;product=tRNA-Ala
gi|15791399|ref|NC_002163.1|	EMBL	gene	698125	698201	.	+	.	ID=gene-tRNA-Ile-3;Name=tRNA-Ile;gbkey=Gene;gene=tRNA-Ile;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	698125	698201	.	+	.	ID=rna-tRNA-Ile-3;Parent=gene-tRNA-Ile-3;Note=tRNA Ile anticodon GAT%2C Cove score 93.24;gbkey=tRNA;gene=tRNA-Ile;product=tRNA-Ile
gi|15791399|ref|NC_002163.1|	EMBL	exon	698125	698201	.	+	.	ID=exon-tRNA-Ile-3-1;Parent=rna-tRNA-Ile-3;Note=tRNA Ile anticodon GAT%2C Cove score 93.24;gbkey=tRNA;gene=tRNA-Ile;product=tRNA-Ile
gi|15791399|ref|NC_002163.1|	EMBL	rRNA	698743	701654	.	+	.	ID=rna-gi|15791399|ref|NC_002163.1|:698743..701654;gbkey=rRNA;product=23S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	698743	701654	.	+	.	ID=exon-gi|15791399|ref|NC_002163.1|:698743..701654-1;Parent=rna-gi|15791399|ref|NC_002163.1|:698743..701654;gbkey=rRNA;product=23S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	rRNA	701939	702058	.	+	.	ID=rna-gi|15791399|ref|NC_002163.1|:701939..702058;gbkey=rRNA;product=5S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	701939	702058	.	+	.	ID=exon-gi|15791399|ref|NC_002163.1|:701939..702058-1;Parent=rna-gi|15791399|ref|NC_002163.1|:701939..702058;gbkey=rRNA;product=5S ribosomal RNA
gi|15791399|ref|NC_002163.1|	EMBL	gene	702810	702917	.	+	.	ID=gene-Cj0747;Name=Cj0747;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0747
gi|15791399|ref|NC_002163.1|	EMBL	CDS	702810	702917	.	+	0	ID=cds-CAL34880.1;Parent=gene-Cj0747;Dbxref=EnsemblGenomes-Gn:Cj0747,EnsemblGenomes-Tr:CAL34880,UniProtKB/TrEMBL:Q0PAD7,NCBI_GP:CAL34880.1;Name=CAL34880.1;Note=Original (2000) note: Cj0747%2C unknown%2C len: 35 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0747;product=hypothetical protein Cj0747;protein_id=CAL34880.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	703027	703119	.	+	.	ID=gene-Cj0748;Name=Cj0748;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0748
gi|15791399|ref|NC_002163.1|	EMBL	CDS	703027	703119	.	+	0	ID=cds-CAL34881.1;Parent=gene-Cj0748;Dbxref=EnsemblGenomes-Gn:Cj0748,EnsemblGenomes-Tr:CAL34881,UniProtKB/TrEMBL:Q0PAD6,NCBI_GP:CAL34881.1;Name=CAL34881.1;Note=Original (2000) note: Cj0748%2C unknown%2C len: 30 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0748;product=hypothetical protein Cj0748;protein_id=CAL34881.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	703132	703170	.	+	.	ID=gene-Cj0752;Name=Cj0752;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0752;part=1/3;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	703172	703263	.	+	.	ID=gene-Cj0752;Name=Cj0752;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0752;part=2/3;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	703266	704369	.	+	.	ID=gene-Cj0752;Name=Cj0752;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0752;part=3/3;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	703132	703170	.	+	0	ID=cds-Cj0752;Parent=gene-Cj0752;Note=Original (2000) note: Cj0752%2C probable IS element transposase pseudogene%2C len: 1113 bp%3B similar to parts of e.g. TR:O06526 (EMBL:U95957) H. pylori transposase homolog B (442 aa). Similar to several Hp genes e.g. HP1095%2CHP0997%2C HP0989%2C HP0438%2C HP1534. No other C.j. matches%3B~Updated (2006) note: Pfam domains PF01385 Probable transposase and PF07282 Putative transposase DNA-binding domain were both identified within CDS. Further support given to product function. Similarity and characterisation work within Helicobacter pylori has led to putative not being added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - IS elements%3B~PMID:9858724%2C PMID:15019987;gbkey=CDS;inference=protein motif:Pfam:PF07282;locus_tag=Cj0752;product=pseudogene (IS element transposase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	703172	703219	.	+	0	ID=cds-Cj0752;Parent=gene-Cj0752;Note=Original (2000) note: Cj0752%2C probable IS element transposase pseudogene%2C len: 1113 bp%3B similar to parts of e.g. TR:O06526 (EMBL:U95957) H. pylori transposase homolog B (442 aa). Similar to several Hp genes e.g. HP1095%2CHP0997%2C HP0989%2C HP0438%2C HP1534. No other C.j. matches%3B~Updated (2006) note: Pfam domains PF01385 Probable transposase and PF07282 Putative transposase DNA-binding domain were both identified within CDS. Further support given to product function. Similarity and characterisation work within Helicobacter pylori has led to putative not being added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - IS elements%3B~PMID:9858724%2C PMID:15019987;gbkey=CDS;inference=protein motif:Pfam:PF07282;locus_tag=Cj0752;product=pseudogene (IS element transposase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	703219	703263	.	+	0	ID=cds-Cj0752;Parent=gene-Cj0752;Note=Original (2000) note: Cj0752%2C probable IS element transposase pseudogene%2C len: 1113 bp%3B similar to parts of e.g. TR:O06526 (EMBL:U95957) H. pylori transposase homolog B (442 aa). Similar to several Hp genes e.g. HP1095%2CHP0997%2C HP0989%2C HP0438%2C HP1534. No other C.j. matches%3B~Updated (2006) note: Pfam domains PF01385 Probable transposase and PF07282 Putative transposase DNA-binding domain were both identified within CDS. Further support given to product function. Similarity and characterisation work within Helicobacter pylori has led to putative not being added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - IS elements%3B~PMID:9858724%2C PMID:15019987;gbkey=CDS;inference=protein motif:Pfam:PF07282;locus_tag=Cj0752;product=pseudogene (IS element transposase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	703266	704369	.	+	0	ID=cds-Cj0752;Parent=gene-Cj0752;Note=Original (2000) note: Cj0752%2C probable IS element transposase pseudogene%2C len: 1113 bp%3B similar to parts of e.g. TR:O06526 (EMBL:U95957) H. pylori transposase homolog B (442 aa). Similar to several Hp genes e.g. HP1095%2CHP0997%2C HP0989%2C HP0438%2C HP1534. No other C.j. matches%3B~Updated (2006) note: Pfam domains PF01385 Probable transposase and PF07282 Putative transposase DNA-binding domain were both identified within CDS. Further support given to product function. Similarity and characterisation work within Helicobacter pylori has led to putative not being added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - IS elements%3B~PMID:9858724%2C PMID:15019987;gbkey=CDS;inference=protein motif:Pfam:PF07282;locus_tag=Cj0752;product=pseudogene (IS element transposase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	703153	703170	.	+	.	ID=id-Cj0752;Note=HMMPfam hit to PF01385%2C Probable transposase%2C score 7e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF01385;is_ordered=true;locus_tag=Cj0752;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	703172	703219	.	+	.	ID=id-Cj0752;Note=HMMPfam hit to PF01385%2C Probable transposase%2C score 7e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF01385;is_ordered=true;locus_tag=Cj0752;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	703219	703263	.	+	.	ID=id-Cj0752;Note=HMMPfam hit to PF01385%2C Probable transposase%2C score 7e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF01385;is_ordered=true;locus_tag=Cj0752;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	703266	704006	.	+	.	ID=id-Cj0752;Note=HMMPfam hit to PF01385%2C Probable transposase%2C score 7e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF01385;is_ordered=true;locus_tag=Cj0752;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	704067	704276	.	+	.	ID=id-Cj0752-2;Note=HMMPfam hit to PF07282%2C Putative transposase DNA-binding domai%2C score 1.1e-33;gbkey=misc_feature;inference=protein motif:Pfam:PF07282;locus_tag=Cj0752
gi|15791399|ref|NC_002163.1|	EMBL	gene	704442	705125	.	-	.	ID=gene-Cj0753c;Name=tonB3;gbkey=Gene;gene=tonB3;gene_biotype=protein_coding;locus_tag=Cj0753c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	704442	705125	.	-	0	ID=cds-CAL34883.1;Parent=gene-Cj0753c;Dbxref=EnsemblGenomes-Gn:Cj0753c,EnsemblGenomes-Tr:CAL34883,GOA:Q0PAD5,InterPro:IPR003538,InterPro:IPR006260,UniProtKB/TrEMBL:Q0PAD5,NCBI_GP:CAL34883.1;Name=CAL34883.1;Note=Original (2000) note: Cj0753c%2C tonB3%2C probable tonB transport protein%2C len: 227 aa%3B almost identical to TONB_CAMCO C. coli tonB protein (232 aa)%3B 96.6%25 identity in 232 aa overlap%2C and similar to e.g. TONB_ECOLI (239 aa%2Cfasta scores%3B opt: 154 z-score: 170.4 E(): 0.034%2C 29.6%25 identity in 162 aa overlap. 34.6%25 identity to HP1341. Also similar to tonB2%2C Cj1630 (41.7%25 identity in 230 aa overlap)%3B~Updated (2006) note: Pfam domain PF03544 Gram-negative bacterial tonB protein identified within CDS. One probable transmembrane helix predicted by TMHMM2.0. Further support given to product function. Characterised within Campylobacter strains. Putative not added to product function. Functional classification -Transport/binding proteins - Other%3B~PMID:9190817%2C PMID:11395459;gbkey=CDS;gene=tonB3;inference=protein motif:TMHMM:2.0;locus_tag=Cj0753c;product=TonB transport protein;protein_id=CAL34883.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	704568	704672	.	-	.	ID=id-Cj0753c;Note=HMMPfam hit to PF03544%2C Gram-negative bacterial tonB protein%2C score 4.1e-13;gbkey=misc_feature;gene=tonB3;inference=protein motif:Pfam:PF03544;locus_tag=Cj0753c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	705039	705092	.	-	.	ID=id-Cj0753c-2;Note=1 probable transmembrane helix predicted for Cj0753c by TMHMM2.0 at aa 12-29;gbkey=misc_feature;gene=tonB3;inference=protein motif:TMHMM:2.0;locus_tag=Cj0753c
gi|15791399|ref|NC_002163.1|	EMBL	gene	705450	707540	.	+	.	ID=gene-Cj0755;Name=cfrA;gbkey=Gene;gene=cfrA;gene_biotype=protein_coding;locus_tag=Cj0755
gi|15791399|ref|NC_002163.1|	EMBL	CDS	705450	707540	.	+	0	ID=cds-CAL34884.1;Parent=gene-Cj0755;Dbxref=EnsemblGenomes-Gn:Cj0755,EnsemblGenomes-Tr:CAL34884,GOA:Q0PAD4,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:Q0PAD4,NCBI_GP:CAL34884.1;Name=CAL34884.1;Note=Original (2000) note: Cj0755%2C cfrA%2C probable iron uptake protein (ferric receptor)%2C len: 696 aa%3B almost identical to TR:O07651 (EMBL:U80812) C. coli ferric receptor CFRA (696 aa)%3B 98.7%25 identity in 696 aa overlap. Also simimlar to e.g. TR:O87518 (EMBL:AF081285) E. coli exogenous ferric siderophore receptor R4 (669 aa)%2C fasta scores%3B opt: 1127 z-score: 1247.0 E(): 0%2C 34.5%25 identity in 693 aa overlap. 23.4%25 identity to HP0686%3B~Updated (2006) note: Pfam domains PF07715 TonB-dependent Receptor Plug Domain and PF00593 TonB dependent receptor identified within CDS. Further support given to product function. Characterisation work within Campylobacter jejuni (following on from Campylobacter coli)%2C has led to product function being modified to more specfic family member. Putative not added to product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:9190817%2C PMID:9765558%2C PMID:15231804%2CPMID:15632442;gbkey=CDS;gene=cfrA;inference=protein motif:Pfam:PF07715;locus_tag=Cj0755;product=ferric enterobactin uptake receptor;protein_id=CAL34884.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	705561	705902	.	+	.	ID=id-Cj0755;Note=HMMPfam hit to PF07715%2C TonB-dependent Receptor Plug Domain%2C score 4.3e-21;gbkey=misc_feature;gene=cfrA;inference=protein motif:Pfam:PF07715;locus_tag=Cj0755
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	706719	707537	.	+	.	ID=id-Cj0755-2;Note=HMMPfam hit to PF00593%2C TonB dependent receptor%2Cscore 2.4e-27;gbkey=misc_feature;gene=cfrA;inference=protein motif:Pfam:PF00593;locus_tag=Cj0755
gi|15791399|ref|NC_002163.1|	EMBL	gene	707840	708634	.	+	.	ID=gene-Cj0757;Name=hrcA;gbkey=Gene;gene=hrcA;gene_biotype=protein_coding;locus_tag=Cj0757
gi|15791399|ref|NC_002163.1|	EMBL	CDS	707840	708634	.	+	0	ID=cds-CAL34885.1;Parent=gene-Cj0757;Dbxref=EnsemblGenomes-Gn:Cj0757,EnsemblGenomes-Tr:CAL34885,GOA:Q9PPG2,InterPro:IPR002571,InterPro:IPR011991,NCBI_GP:CAL34885.1;Name=CAL34885.1;Note=Original (2000) note: Cj0757%2C hrcA%2C possible heat shock regulator%2C len: 264 aa%3B identical to TR:O69296 (EMBL:Y17165) C. jejuni heat shock regulator (fragment) (95 aa)%2C and similar to HRCA_LACLA heat-inducible transcription repressor HRCA (347 aa)%2C fasta scores%3B opt: 176 z-score: 220.8 E(): 5.3e-05%2C 23.6%25 identity in 276 aa overlap. 27.6%25 identity to HP0111%3B~Updated (2006) note: Characterised within Campylobacter jejuni%2C however%2C not sure about the overall similarity of the encoded polypeptide to other bacterial HrcA proteins (PMID:10024560). Thus%2C putative kept in product function. Functional classification - Chaperones%2Cchaperonins%2C heat shock%3B~PMID:10024560;gbkey=CDS;gene=hrcA;locus_tag=Cj0757;product=putative heat shock regulator;protein_id=CAL34885.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	708631	709161	.	+	.	ID=gene-Cj0758;Name=grpE;gbkey=Gene;gene=grpE;gene_biotype=protein_coding;locus_tag=Cj0758
gi|15791399|ref|NC_002163.1|	EMBL	CDS	708631	709161	.	+	0	ID=cds-CAL34886.1;Parent=gene-Cj0758;Dbxref=EnsemblGenomes-Gn:Cj0758,EnsemblGenomes-Tr:CAL34886,GOA:O69297,InterPro:IPR000740,InterPro:IPR009012,InterPro:IPR013805,NCBI_GP:CAL34886.1;Name=CAL34886.1;Note=Original (2000) note: Cj0758%2C grpE%2C heat shock protein%2C len: 176 aa%3B almost identical to TR:O69297 (EMBL:Y17165) C. jejuni grpE%3B 98.3%25 identity in 176 aa overlap%2C and similar to e.g. GRPE_STAAU GRPE protein (HSP20) (208 aa)%2C fasta scores%3B opt: 399 z-score: 425.7 E(): 2e-16%2C 38.5%25 identity in 187 aa overlap. 35.8%25 identity to HP0110. Contains Pfam match to entry PF01025 GrpE%3B~Updated (2006) note: Characterised within Campylobacter jejuni and others to GrpE protein. Putative not added to product function. Functional classification -Chaperones%2C chaperonins%2C heat shock%3B~PMID:10024560;gbkey=CDS;gene=grpE;inference=protein motif:Pfam:PF01025;locus_tag=Cj0758;product=heat shock protein GrpE;protein_id=CAL34886.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	708664	709158	.	+	.	ID=id-Cj0758;Note=HMMPfam hit to PF01025%2C GrpE%2C score 4.9e-55;gbkey=misc_feature;gene=grpE;inference=protein motif:Pfam:PF01025;locus_tag=Cj0758
gi|15791399|ref|NC_002163.1|	EMBL	gene	709183	711054	.	+	.	ID=gene-Cj0759;Name=dnaK;gbkey=Gene;gene=dnaK;gene_biotype=protein_coding;locus_tag=Cj0759
gi|15791399|ref|NC_002163.1|	EMBL	CDS	709183	711054	.	+	0	ID=cds-CAL34887.1;Parent=gene-Cj0759;Dbxref=EnsemblGenomes-Gn:Cj0759,EnsemblGenomes-Tr:CAL34887,GOA:O69298,InterPro:IPR012725,InterPro:IPR013126,InterPro:IPR018181,InterPro:IPR029047,InterPro:IPR029048,NCBI_GP:CAL34887.1;Name=CAL34887.1;Note=Original (2000) note: Cj0759%2C dnaK%2C heat shock protein (hsp70)%2C len: 623 aa%3B identical to TR:O69298 (EMBL:Y17165) C. jejuni dnaK%2C and similar to e.g. DNAK_BRAJA DNAK protein (heat shock protein 70) (633 aa)%2Cfasta scores%3B opt: 2452 z-score: 2295.1 E(): 0%2C 62.3%25 identity in 623 aa overlap. 78.2%25 identity to HP0109. Contains PS00297%2C PS00329 and PS01036 Heat shock hsp70 proteins family signatures 1%2C 2 and 3%2C and Pfam match to entry PF00012 HSP70%3B~Updated (2006) note: Characterised within Campylobacter jejuni and others to DnaK protein. Putative not added to product function. Functional classification -Chaperones%2C chaperonins%2C heat shock%3B~PMID:10024560;gbkey=CDS;gene=dnaK;inference=protein motif:Prosite:PS01036;locus_tag=Cj0759;product=heat shock protein DnaK;protein_id=CAL34887.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	709192	710982	.	+	.	ID=id-Cj0759;Note=HMMPfam hit to PF00012%2C Hsp70 protein%2C score 0;gbkey=misc_feature;gene=dnaK;inference=protein motif:Pfam:PF00012;locus_tag=Cj0759
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	709201	709224	.	+	.	ID=id-Cj0759-2;Note=PS00297 Heat shock hsp70 proteins family signature 1;gbkey=misc_feature;gene=dnaK;inference=protein motif:Prosite:PS00297;locus_tag=Cj0759
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	709750	709791	.	+	.	ID=id-Cj0759-3;Note=PS00329 Heat shock hsp70 proteins family signature 2;gbkey=misc_feature;gene=dnaK;inference=protein motif:Prosite:PS00329;locus_tag=Cj0759
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	710173	710217	.	+	.	ID=id-Cj0759-4;Note=PS01036 Heat shock hsp70 proteins family signature 3;gbkey=misc_feature;gene=dnaK;inference=protein motif:Prosite:PS01036;locus_tag=Cj0759
gi|15791399|ref|NC_002163.1|	EMBL	gene	711314	712336	.	+	.	ID=gene-Cj0760;Name=Cj0760;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0760
gi|15791399|ref|NC_002163.1|	EMBL	CDS	711314	712336	.	+	0	ID=cds-CAL34888.1;Parent=gene-Cj0760;Dbxref=EnsemblGenomes-Gn:Cj0760,EnsemblGenomes-Tr:CAL34888,GOA:Q0PAD0,InterPro:IPR001279,InterPro:IPR024884,UniProtKB/TrEMBL:Q0PAD0,NCBI_GP:CAL34888.1;Name=CAL34888.1;Note=Original (2000) note: Cj0760%2C unknown%2C len: 340 aa%3B similar to hypothetical proteins e.g. YZ34_MYCTU Rv0906%2C(MTCY31.34) (372 aa)%2C fasta scores%3B opt: 598 z-score: 724.2 E(): 4.8e-33%2C 29.9%25 identity in 335 aa overlap. Some similarity in C-terminus to ROMA_KLEPN outer membrane protein roma (fragment) (132 aa)%2C fasta scores%3B opt: 335 z-score: 415.0 E(): 8.1e-16%2C 43.0%25 identity in 114 aa overlap. No Hp match%3B~Updated (2006) note: Literature search identified paper giving clues to product function. Product function modified based on literature search. Putative kept within product function. Functional classification - Conserved hypothetical proteins%3B~PMID:15758238;gbkey=CDS;locus_tag=Cj0760;product=hypothetical protein Cj0760;protein_id=CAL34888.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	712406	712747	.	+	.	ID=gene-Cj0761;Name=Cj0761;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0761
gi|15791399|ref|NC_002163.1|	EMBL	CDS	712406	712747	.	+	0	ID=cds-CAL34889.1;Parent=gene-Cj0761;Dbxref=EnsemblGenomes-Gn:Cj0761,EnsemblGenomes-Tr:CAL34889,InterPro:IPR011051,InterPro:IPR014710,UniProtKB/TrEMBL:Q0PAC9,NCBI_GP:CAL34889.1;Name=CAL34889.1;Note=Original (2000) note: Cj0761%2C unknown%2C len: aa%3B similar to hypothetical proteins e.g. TR:O67079 (EMBL:AE000715) Aquifex aeolicus AQ_943 (107 aa)%2C fasta scores%3B opt: 130 z-score: 186.5 E(): 0.0043%2C 28.6%25 identity in 84 aa overlap. 55.8%25 identity to HP0902%3B~Updated (2006) note: Literature search identified paper giving clues to product function. Functional classification - Conserved hypothetical proteins%3B~PMID:15758235;gbkey=CDS;locus_tag=Cj0761;product=hypothetical protein Cj0761;protein_id=CAL34889.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	712797	713966	.	-	.	ID=gene-Cj0762c;Name=aspB;gbkey=Gene;gene=aspB;gene_biotype=protein_coding;locus_tag=Cj0762c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	712797	713966	.	-	0	ID=cds-CAL34890.1;Parent=gene-Cj0762c;Dbxref=EnsemblGenomes-Gn:Cj0762c,EnsemblGenomes-Tr:CAL34890,GOA:Q0PAC8,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0PAC8,NCBI_GP:CAL34890.1;Name=CAL34890.1;Note=Original (2000) note: Cj0762c%2C aspB%2C probable aspartate aminotransferase%2C len: 389 aa%3B similar to e.g. AAT1_BACSU aspartate aminotransferase (EC 2.6.1.1) (393 aa)%2C fasta scores%3B opt: 1216 z-score: 1352.8 E(): 0%2C 50.6%25 identity in 393 aa overlap. 57.5%25 identity to HP0672. Contains Pfam match to entry PF00155 aminotran_1%2CAminotransferases class-I%3B~Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Aspartate family%3B~PMID:10712618;gbkey=CDS;gene=aspB;inference=protein motif:Pfam:PF00155;locus_tag=Cj0762c;product=aspartate aminotransferase;protein_id=CAL34890.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	712812	713738	.	-	.	ID=id-Cj0762c;Note=HMMPfam hit to PF00155%2C Aminotransferase class I and II%2C score 5.3e-50;gbkey=misc_feature;gene=aspB;inference=protein motif:Pfam:PF00155;locus_tag=Cj0762c
gi|15791399|ref|NC_002163.1|	EMBL	gene	714138	714776	.	-	.	ID=gene-Cj0763c;Name=cysE;gbkey=Gene;gene=cysE;gene_biotype=protein_coding;locus_tag=Cj0763c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	714138	714776	.	-	0	ID=cds-CAL34891.1;Parent=gene-Cj0763c;Dbxref=EnsemblGenomes-Gn:Cj0763c,EnsemblGenomes-Tr:CAL34891,GOA:Q0PAC7,InterPro:IPR001451,InterPro:IPR005881,InterPro:IPR011004,InterPro:IPR018357,UniProtKB/TrEMBL:Q0PAC7,NCBI_GP:CAL34891.1;Name=CAL34891.1;Note=Original (2000) note: Cj0763c%2C cysE%2C probable serine acetyltransferase%2C len: 212 aa%3B highly similar to many e.g. CYSE_BACSU serine acetyltransferase (EC 2.3.1.30) (217 aa)%2C fasta scores%3B opt: 598 z-score: 700.2 E(): 1e-31%2C 46.6%25 identity in 204 aa overlap. 50.9%25 identity to HP1210. Contains PS00101 Hexapeptide-repeat containing-transferases signature and 2x Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%3B~Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Serine family%3B~PMID:7510287;gbkey=CDS;gene=cysE;inference=protein motif:Prosite:PS00101;locus_tag=Cj0763c;product=serine acetyltransferase;protein_id=CAL34891.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	714306	714392	.	-	.	ID=id-Cj0763c;Note=PS00101 Hexapeptide-repeat containing-transferases signature;gbkey=misc_feature;gene=cysE;inference=protein motif:Prosite:PS00101;locus_tag=Cj0763c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	714312	714365	.	-	.	ID=id-Cj0763c-2;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 0.31;gbkey=misc_feature;gene=cysE;inference=protein motif:Pfam:PF00132;locus_tag=Cj0763c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	714366	714419	.	-	.	ID=id-Cj0763c-3;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 17;gbkey=misc_feature;gene=cysE;inference=protein motif:Pfam:PF00132;locus_tag=Cj0763c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	714447	714500	.	-	.	ID=id-Cj0763c-4;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 0.077;gbkey=misc_feature;gene=cysE;inference=protein motif:Pfam:PF00132;locus_tag=Cj0763c
gi|15791399|ref|NC_002163.1|	EMBL	gene	714777	716612	.	-	.	ID=gene-Cj0764c;Name=speA;gbkey=Gene;gene=speA;gene_biotype=protein_coding;locus_tag=Cj0764c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	714777	716612	.	-	0	ID=cds-CAL34892.1;Parent=gene-Cj0764c;Dbxref=EnsemblGenomes-Gn:Cj0764c,EnsemblGenomes-Tr:CAL34892,GOA:Q0PAC6,InterPro:IPR000183,InterPro:IPR002985,InterPro:IPR009006,InterPro:IPR022643,InterPro:IPR022644,InterPro:IPR022653,InterPro:IPR029066,PDB:3NZP,UniProtKB/TrEMBL:Q0PAC6,NCBI_GP:CAL34892.1;Name=CAL34892.1;Note=Original (2000) note: Cj0764c%2C speA%2C probable biosynthetic arginine decarboxylase%2C len: 611 aa%3B similar to many e.g. SPEA_ECOLI biosynthetic arginine decarboxylase (EC 4.1.1.19) (658 aa)%2C fasta scores%3B opt: 1077 z-score: 1198.7 E(): 0%2C 36.1%25 identity in 613 aa overlap. 62.6%25 identity to HP0422. Contains PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site%2C and 2x Pfam match to entry PF00278 Orn_DAP_Arg_deC%2CPyridoxal-dependent decarboxylase%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Polyamine synthesis%3B~PMID:2198270;gbkey=CDS;gene=speA;inference=protein motif:Prosite:PS00878;locus_tag=Cj0764c;product=biosynthetic arginine decarboxylase;protein_id=CAL34892.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	714996	715397	.	-	.	ID=id-Cj0764c;Note=HMMPfam hit to PF00278%2C Pyridoxal-dependent decarboxylase%2C C-%2C score 2.2e-08;gbkey=misc_feature;gene=speA;inference=protein motif:Pfam:PF00278;locus_tag=Cj0764c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	715629	716441	.	-	.	ID=id-Cj0764c-2;Note=HMMPfam hit to PF02784%2C Pyridoxal-dependent decarboxylase%2C py%2C score 1.7e-39;gbkey=misc_feature;gene=speA;inference=protein motif:Pfam:PF02784;locus_tag=Cj0764c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	716310	716366	.	-	.	ID=id-Cj0764c-3;Note=PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site;gbkey=misc_feature;gene=speA;inference=protein motif:Prosite:PS00878;locus_tag=Cj0764c
gi|15791399|ref|NC_002163.1|	EMBL	gene	716609	717835	.	-	.	ID=gene-Cj0765c;Name=hisS;gbkey=Gene;gene=hisS;gene_biotype=protein_coding;locus_tag=Cj0765c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	716609	717835	.	-	0	ID=cds-CAL34893.1;Parent=gene-Cj0765c;Dbxref=EnsemblGenomes-Gn:Cj0765c,EnsemblGenomes-Tr:CAL34893,GOA:Q9PPF4,InterPro:IPR004154,InterPro:IPR004516,InterPro:IPR006195,InterPro:IPR015807,NCBI_GP:CAL34893.1;Name=CAL34893.1;Note=Original (2000) note: Cj0765c%2C hisS%2C probable histidyl-tRNA synthetase%2C len: 408 aa%3B similar to many e.g. SYH_ECOLI histidyl-tRNA synthetase (EC 6.1.1.21) (423 aa)%2C fasta scores%3B opt: 927 z-score: 1052.2 E(): 0%2C 37.6%25 identity in 407 aa overlap. 29.8%25 identity to HP1190. Contains PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2 and Pfam match to entry PF00587 tRNA-synt_2b%2C tRNA synthetases class II (Gly%2C His%2C Pro and Ser)%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:2991272;gbkey=CDS;gene=hisS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0765c;product=histidyl-tRNA synthetase;protein_id=CAL34893.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	716612	716872	.	-	.	ID=id-Cj0765c;Note=HMMPfam hit to PF03129%2C Anticodon binding domain%2Cscore 0.018;gbkey=misc_feature;gene=hisS;inference=protein motif:Pfam:PF03129;locus_tag=Cj0765c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	716906	716935	.	-	.	ID=id-Cj0765c-2;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=hisS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0765c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	717365	717817	.	-	.	ID=id-Cj0765c-3;Note=HMMPfam hit to PF00587%2C tRNA synthetase class II core domain (%2C score 1.5e-36;gbkey=misc_feature;gene=hisS;inference=protein motif:Pfam:PF00587;locus_tag=Cj0765c
gi|15791399|ref|NC_002163.1|	EMBL	gene	717832	718410	.	-	.	ID=gene-Cj0766c;Name=tmk;gbkey=Gene;gene=tmk;gene_biotype=protein_coding;locus_tag=Cj0766c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	717832	718410	.	-	0	ID=cds-CAL34894.1;Parent=gene-Cj0766c;Dbxref=EnsemblGenomes-Gn:Cj0766c,EnsemblGenomes-Tr:CAL34894,GOA:Q9PPF3,InterPro:IPR018094,InterPro:IPR027417,NCBI_GP:CAL34894.1;Name=CAL34894.1;Note=Original (2000) note: Cj0766c%2C tmk%2C probable thymidylate kinase%2C len: 192 aa%3B similar to many e.g. KTHY_ECOLI thymidylate kinase (EC 2.7.4.9) (DTMP KINAS (213 aa)%2C fasta scores%3B opt: 181 z-score: 222.6 E(): 4.2e-05%2C 28.2%25 identity in 202 aa overlap. 48.5%25 identity to HP1474. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF02223 Thymidylate kinase and Prosite domain PS01331 THYMIDYLATE_KINASE%2C Thymidylate kinase identified within CDS. Further support given to product function. Characterised within Escherichia coli%2C however%2C identity was marginal. Putative removed from product function. Functional classification - 2'-deoxyribonucleotide biosynthesis%3B~PMID:8631667;gbkey=CDS;gene=tmk;inference=protein motif:Prosite:PS01331;locus_tag=Cj0766c;product=thymidylate kinase;protein_id=CAL34894.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	717850	718398	.	-	.	ID=id-Cj0766c;Note=HMMPfam hit to PF02223%2C Thymidylate kinase%2C score 5.9e-33;gbkey=misc_feature;gene=tmk;inference=protein motif:Pfam:PF02223;locus_tag=Cj0766c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	718126	718164	.	-	.	ID=id-Cj0766c-2;Note=PS01331 Thymidylate kinase signature;gbkey=misc_feature;gene=tmk;inference=protein motif:Prosite:PS01331;locus_tag=Cj0766c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	718369	718392	.	-	.	ID=id-Cj0766c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=tmk;inference=protein motif:Prosite:PS00017;locus_tag=Cj0766c
gi|15791399|ref|NC_002163.1|	EMBL	gene	718401	718877	.	-	.	ID=gene-Cj0767c;Name=coaD;gbkey=Gene;gene=coaD;gene_biotype=protein_coding;locus_tag=Cj0767c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	718401	718877	.	-	0	ID=cds-CAL34895.1;Parent=gene-Cj0767c;Dbxref=EnsemblGenomes-Gn:Cj0767c,EnsemblGenomes-Tr:CAL34895,GOA:Q9PPF2,InterPro:IPR001980,InterPro:IPR004821,InterPro:IPR014729,NCBI_GP:CAL34895.1;Name=CAL34895.1;Note=Original (2000) note: Cj0767c%2C kdtB%2C probable 3-deoxy-D-manno-octulosonic-acid transferase%2C len: 158 aa%3B highly similar to e.g. KDTB_ECOLI lipopolysaccharide core biosynthesis protein (159 aa)opt: 507 z-score: 656.5 E(): 2.9e-29%2C 48.3%25 identity in 145 aa overlap. 57.0%25 identity to HP1475%3B~Updated (2006) note: Pfam domain PF01467 Cytidylyltransferase identified within CDS. Characterised within Escherichia coli with acceptable identity score. This particular piece of research demonstrates a new function and gene name for Cj0767c. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers -Pantothenate%3B~PMID:15866922%2C PMID:10480925;gbkey=CDS;gene=coaD;inference=protein motif:Pfam:PF01467;locus_tag=Cj0767c;product=phosphopantetheine adenylyltransferase;protein_id=CAL34895.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	718479	718868	.	-	.	ID=id-Cj0767c;Note=HMMPfam hit to PF01467%2C Cytidylyltransferase%2C score 1.9e-29;gbkey=misc_feature;gene=coaD;inference=protein motif:Pfam:PF01467;locus_tag=Cj0767c
gi|15791399|ref|NC_002163.1|	EMBL	gene	718917	719480	.	-	.	ID=gene-Cj0768c;Name=Cj0768c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0768c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	718917	719480	.	-	0	ID=cds-CAL34896.1;Parent=gene-Cj0768c;Dbxref=EnsemblGenomes-Gn:Cj0768c,EnsemblGenomes-Tr:CAL34896,GOA:Q9PPF1,InterPro:IPR003382,InterPro:IPR004507,NCBI_GP:CAL34896.1;Name=CAL34896.1;Note=Original (2000) note: Cj0768c%2C probable decarboxylase%2C len: 187 aa%3B similar to e.g. UBIX_ECOLI 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (189 aa)%2Cfasta scores%3B opt: 366 z-score: 476.9 E(): 2.9e-19%2C 34.0%25 identity in 188 aa overlap%2C and PAD1_YEAST phenylacrylic acid decarboxylase (242 aa)%2C fasta scores%3B opt: 370 z-score: 480.4 E(): 1.8e-19%2C 34.1%25 identity in 185 aa overlap. 39.1%25 identity to HP1476%3B~Updated (2006) note: Pfam domain PF02441 Flavoprotein identified within CDS. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF02441;locus_tag=Cj0768c;product=putative decarboxylase;protein_id=CAL34896.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	719112	719480	.	-	.	ID=id-Cj0768c;Note=HMMPfam hit to PF02441%2C Flavoprotein%2C score 2.5e-29;gbkey=misc_feature;inference=protein motif:Pfam:PF02441;locus_tag=Cj0768c
gi|15791399|ref|NC_002163.1|	EMBL	gene	719477	720139	.	-	.	ID=gene-Cj0769c;Name=flgA;gbkey=Gene;gene=flgA;gene_biotype=protein_coding;locus_tag=Cj0769c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	719477	720139	.	-	0	ID=cds-CAL34897.1;Parent=gene-Cj0769c;Dbxref=EnsemblGenomes-Gn:Cj0769c,EnsemblGenomes-Tr:CAL34897,InterPro:IPR013974,InterPro:IPR017585,UniProtKB/TrEMBL:Q0PAC1,NCBI_GP:CAL34897.1;Name=CAL34897.1;Note=Original (2000) note: Cj0769c%2C probable periplasmic protein%2C len: 220 aa%3B 29.8%25 identity to HP1477. Contains N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF03240 FlgA family protein identified within CDS. The FlgA protein is involved in the assembly of the flageller P-ring. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly%2C or may act as a modulator protein for P-ring assembly. Product modified to more specific family member due to motif match. Characterisation work in more than one species with marginal identity scores. Putative kept within product function. Functional classification - Surface structures%3B~PMID:15817382%2C PMID:2129540%2C PMID:10832645;gbkey=CDS;gene=flgA;inference=protein motif:Pfam:PF03240;locus_tag=Cj0769c;product=putative flagellar protein FlgA;protein_id=CAL34897.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	719480	719962	.	-	.	ID=id-Cj0769c;Note=HMMPfam hit to PF03240%2C FlgA family%2C score 8e-05;gbkey=misc_feature;gene=flgA;inference=protein motif:Pfam:PF03240;locus_tag=Cj0769c
gi|15791399|ref|NC_002163.1|	EMBL	gene	720223	720999	.	-	.	ID=gene-Cj0770c;Name=Cj0770c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0770c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	720223	720999	.	-	0	ID=cds-CAL34898.1;Parent=gene-Cj0770c;Dbxref=EnsemblGenomes-Gn:Cj0770c,EnsemblGenomes-Tr:CAL34898,InterPro:IPR004872,UniProtKB/TrEMBL:Q0PAC0,NCBI_GP:CAL34898.1;Name=CAL34898.1;Note=Original (2000) note: Cj0770c%2C probable periplasmic protein%2C len: 258 aa%3B similar to lipoproteins from other organisms e.g. PLPC_PASHA outer membrane lipoprotein 3 precursor (263 aa)%2C fasta scores%3B opt: 569 z-score: 657.0 E(): 2.7e-29%2C 38.9%25 identity in 265 aa overlap%2C and TR:O69441 (EMBL:AJ005668) Legionella pneumophila 29 kda immunogenic protein (259 aa)%2C fasta scores%3B opt: 584 z-score: 674.2 E(): 3e-30%2C 41.0%25 identity in 261 aa overlap. Also similar to Cj0772c (55.0%25 identity)%2C Cj0771c (54.8%25 identity) and Cj1200 (44.9%25 identity). Single copy in Hp (HP1564)%3B~Updated (2006) note: Pfam domain PF03180 NLPA lipoprotein identified within CDS. NLPA lipoproteins are a family of bacterial lipoproteins that contain many antigenic members%2C which may be involved in bacterial virulence. The function is currently unknown. Product modified to more specific family member due to motif match. Some characterisation work in more than one species. Highly similar to Cj0771c and Cj0772c. Putative kept within product function. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:12169620;gbkey=CDS;inference=protein motif:Pfam:PF03180;locus_tag=Cj0770c;product=putative NLPA family lipoprotein;protein_id=CAL34898.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	720226	720930	.	-	.	ID=id-Cj0770c;Note=HMMPfam hit to PF03180%2C NLPA lipoprotein%2C score 5.2e-129;gbkey=misc_feature;inference=protein motif:Pfam:PF03180;locus_tag=Cj0770c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	720913	720981	.	-	.	ID=id-Cj0770c-2;Note=1 probable transmembrane helix predicted for Cj0770c by TMHMM2.0 at aa 7-29;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0770c
gi|15791399|ref|NC_002163.1|	EMBL	gene	721009	721779	.	-	.	ID=gene-Cj0771c;Name=Cj0771c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0771c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	721009	721779	.	-	0	ID=cds-CAL34899.1;Parent=gene-Cj0771c;Dbxref=EnsemblGenomes-Gn:Cj0771c,EnsemblGenomes-Tr:CAL34899,InterPro:IPR004872,UniProtKB/TrEMBL:Q0PAB9,NCBI_GP:CAL34899.1;Name=CAL34899.1;Note=Original (2000) note: Cj0771c%2C probable periplasmic protein%2C len: 258 aa%3B similar to lipoproteins from other organisms e.g. NLPA_ECOLI lipoprotein-28 precursor (272 aa)%2C fasta scores%3B opt: 623 z-score: 705.2 E(): 5.6e-32%2C46.4%25 identity in 237 aa overlap%2C and TR:O69441 (EMBL:AJ005668) Legionella pneumophila 29 kda immunogenic protein (259 aa)%2C fasta scores%3B opt: 661 z-score: 747.9 E(): 0%2C 44.2%25 identity in 258 aa overlap. Also similar to Cj0772c (52.5%25 identity)%2C Cj0770c (54.8%25 identity) and Cj1200 (45.6%25 identity). Single copy in Hp (HP1564)%3B~Updated (2006) note: Pfam domain PF03180 NLPA lipoprotein identified within CDS. NLPA lipoproteins are a family of bacterial lipoproteins that contain many antigenic members%2C which may be involved in bacterial virulence. The function is currently unknown. Product modified to more specific family member due to motif match. Some characterisation in more than one species. Also similar to Cj0770c and Cj0772c. Putative kept within product function. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:12169620;gbkey=CDS;inference=protein motif:Pfam:PF03180;locus_tag=Cj0771c;product=putative NLPA family lipoprotein;protein_id=CAL34899.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	721012	721713	.	-	.	ID=id-Cj0771c;Note=HMMPfam hit to PF03180%2C NLPA lipoprotein%2C score 2.2e-132;gbkey=misc_feature;inference=protein motif:Pfam:PF03180;locus_tag=Cj0771c
gi|15791399|ref|NC_002163.1|	EMBL	gene	721828	722601	.	-	.	ID=gene-Cj0772c;Name=Cj0772c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0772c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	721828	722601	.	-	0	ID=cds-CAL34900.1;Parent=gene-Cj0772c;Dbxref=EnsemblGenomes-Gn:Cj0772c,EnsemblGenomes-Tr:CAL34900,InterPro:IPR004872,UniProtKB/TrEMBL:Q0PAB8,NCBI_GP:CAL34900.1;Name=CAL34900.1;Note=Original (2000) note: Cj0772c%2C probable periplasmic protein%2C len: 258 aa%3B similar to lipoproteins from other organisms e.g. PLPC_PASHA outer membrane lipoprotein 3 precursor (263 aa)%2C fasta scores%3B opt: 642 z-score: 721.7 E(): 6.7e-33. 40.8%25 identity in 260 aa overlap%2C and TR:O69441 (EMBL:AJ005668) Legionella pneumophila 29 kda immunogenic protein (259 aa)%2C fasta scores%3B opt: 638 z-score: 717.3 E(): 1.2e-32. 39.8%25 identity in 259 aa overlap. Also similar to Cj0770c (55.0%25 identity)%2C Cj0771c (52.5%25 identity) and Cj1200 (57.5%25 identity). Single copy in Hp (HP1564%3B 47.7%25 identity in 243 aa overlap)%3B~Updated (2006) note: Pfam domain PF03180 NLPA lipoprotein identified within CDS. NLPA lipoproteins are a family of bacterial lipoproteins that contain many antigenic members%2C which may be involved in bacterial virulence. The function is currently unknown. Product modified to more specific family member due to motif match. Some characterisation in more than one species. Also similar to Cj0770c and Cj0771c. Putative kept within product function. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:12169620;gbkey=CDS;inference=protein motif:Pfam:PF03180;locus_tag=Cj0772c;product=putative NLPA family lipoprotein;protein_id=CAL34900.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	721831	722532	.	-	.	ID=id-Cj0772c;Note=HMMPfam hit to PF03180%2C NLPA lipoprotein%2C score 1.1e-145;gbkey=misc_feature;inference=protein motif:Pfam:PF03180;locus_tag=Cj0772c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	722515	722601	.	-	.	ID=id-Cj0772c-2;Note=PS00430 TonB-dependent receptor proteins signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00430;locus_tag=Cj0772c
gi|15791399|ref|NC_002163.1|	EMBL	gene	722791	723702	.	-	.	ID=gene-Cj0773c;Name=Cj0773c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0773c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	722791	723702	.	-	0	ID=cds-CAL34901.1;Parent=gene-Cj0773c;Dbxref=EnsemblGenomes-Gn:Cj0773c,EnsemblGenomes-Tr:CAL34901,GOA:Q0PAB7,InterPro:IPR000515,UniProtKB/TrEMBL:Q0PAB7,NCBI_GP:CAL34901.1;Name=CAL34901.1;Note=Original (2000) note: Cj0773c%2C probable binding-protein dependent transport system permease protein%2C len: 303 aa%3B similar to many e.g. PROW_BACSU glycine betaine/L-proline transport system permease protein (217 aa)%2C fasta scores%3B opt: 212 z-score: 249.9 E(): 1.3e-06%2C 30.0%25 identity in 190 aa overlap. 43.9%25 identity in 205 aa overlap to HP1577. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%3B~Updated (2006) note: Seven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score carried out yet. Putative added to product function. Functional classification -Transport/binding proteins - Other%3B~PMID:12169620;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0773c;product=putative binding-protein dependent transport system permease protein;protein_id=CAL34901.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	722800	722859	.	-	.	ID=id-Cj0773c;Note=7 probable transmembrane helices predicted for Cj0773c by TMHMM2.0 at aa 57-79%2C 92-114%2C 119-141%2C 184-206%2C226-248%2C 260-277 and 282-301;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0773c;part=1/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	722872	722925	.	-	.	ID=id-Cj0773c;Note=7 probable transmembrane helices predicted for Cj0773c by TMHMM2.0 at aa 57-79%2C 92-114%2C 119-141%2C 184-206%2C226-248%2C 260-277 and 282-301;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0773c;part=2/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	722959	723027	.	-	.	ID=id-Cj0773c;Note=7 probable transmembrane helices predicted for Cj0773c by TMHMM2.0 at aa 57-79%2C 92-114%2C 119-141%2C 184-206%2C226-248%2C 260-277 and 282-301;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0773c;part=3/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	723085	723153	.	-	.	ID=id-Cj0773c;Note=7 probable transmembrane helices predicted for Cj0773c by TMHMM2.0 at aa 57-79%2C 92-114%2C 119-141%2C 184-206%2C226-248%2C 260-277 and 282-301;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0773c;part=4/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	723280	723348	.	-	.	ID=id-Cj0773c;Note=7 probable transmembrane helices predicted for Cj0773c by TMHMM2.0 at aa 57-79%2C 92-114%2C 119-141%2C 184-206%2C226-248%2C 260-277 and 282-301;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0773c;part=5/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	723361	723429	.	-	.	ID=id-Cj0773c;Note=7 probable transmembrane helices predicted for Cj0773c by TMHMM2.0 at aa 57-79%2C 92-114%2C 119-141%2C 184-206%2C226-248%2C 260-277 and 282-301;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0773c;part=6/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	723466	723534	.	-	.	ID=id-Cj0773c;Note=7 probable transmembrane helices predicted for Cj0773c by TMHMM2.0 at aa 57-79%2C 92-114%2C 119-141%2C 184-206%2C226-248%2C 260-277 and 282-301;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0773c;part=7/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	722941	723552	.	-	.	ID=id-Cj0773c-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 1.9e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF00528;locus_tag=Cj0773c
gi|15791399|ref|NC_002163.1|	EMBL	gene	723699	724709	.	-	.	ID=gene-Cj0774c;Name=Cj0774c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0774c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	723699	724709	.	-	0	ID=cds-CAL34902.1;Parent=gene-Cj0774c;Dbxref=EnsemblGenomes-Gn:Cj0774c,EnsemblGenomes-Tr:CAL34902,GOA:Q0PAB6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR017908,InterPro:IPR018449,InterPro:IPR026253,InterPro:IPR027417,NCBI_GP:CAL34902.1;Name=CAL34902.1;Note=Original (2000) note: Cj0774c%2C probable ABC transport system ATP-binding protein%2C len: 336 aa%3B similar to many e.g. HISP_ECOLI histidine transport ATP-binding protein (257 aa)%2C fasta scores%3B opt: 497 z-score: 566.5 E(): 2.9e-24%2C 38.5%25 identity in 262 aa overlap%2C and OCCP_AGRT6 octopine permease ATP-binding protein P (262 aa)%2C fasta scores%3B opt: 511 z-score: 582.1 E(): 4e-25%2C36.9%25 identity in 260 aa overlap. 38.9%25 identity to HP1576. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Transport/binding proteins - Other%3B~PMID:3313284;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj0774c;product=ABC transport system ATP-binding protein;protein_id=CAL34902.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	724020	724631	.	-	.	ID=id-Cj0774c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 1.8e-69;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj0774c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	724206	724250	.	-	.	ID=id-Cj0774c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj0774c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	724587	724610	.	-	.	ID=id-Cj0774c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0774c
gi|15791399|ref|NC_002163.1|	EMBL	gene	724714	727326	.	-	.	ID=gene-Cj0775c;Name=valS;gbkey=Gene;gene=valS;gene_biotype=protein_coding;locus_tag=Cj0775c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	724714	727326	.	-	0	ID=cds-CAL34903.1;Parent=gene-Cj0775c;Dbxref=EnsemblGenomes-Gn:Cj0775c,EnsemblGenomes-Tr:CAL34903,GOA:Q9PPE4,InterPro:IPR001412,InterPro:IPR002300,InterPro:IPR002303,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR010978,InterPro:IPR013155,InterPro:IPR014729,InterPro:IPR019499,NCBI_GP:CAL34903.1;Name=CAL34903.1;Note=Original (2000) note: Cj0775c%2C valS%2C probable valyl-tRNA synthetase%2C len: 870 aa%3B similar to many e.g. SYV_ECOLI valyl-tRNA synthetase (EC 6.1.1.9) (951 aa)%2Cfasta scores%3B opt: 1027 z-score: 1128.2 E(): 0%2C 38.1%25 identity in 938 aa overlap. 59.6%25 identity to HP1153. Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature%2C and Pfam match to entry PF00133 tRNA-synt_1%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:3275660;gbkey=CDS;gene=valS;inference=protein motif:Prosite:PS00178;locus_tag=Cj0775c;product=valyl-tRNA synthetase;protein_id=CAL34903.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	725626	727302	.	-	.	ID=id-Cj0775c;Note=HMMPfam hit to PF00133%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score 1.7e-207;gbkey=misc_feature;gene=valS;inference=protein motif:Pfam:PF00133;locus_tag=Cj0775c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	727168	727203	.	-	.	ID=id-Cj0775c-2;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=valS;inference=protein motif:Prosite:PS00178;locus_tag=Cj0775c
gi|15791399|ref|NC_002163.1|	EMBL	gene	727349	728371	.	-	.	ID=gene-Cj0776c;Name=Cj0776c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0776c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	727349	728371	.	-	0	ID=cds-CAL34904.1;Parent=gene-Cj0776c;Dbxref=EnsemblGenomes-Gn:Cj0776c,EnsemblGenomes-Tr:CAL34904,UniProtKB/TrEMBL:Q0PAB4,NCBI_GP:CAL34904.1;Name=CAL34904.1;Note=Original (2000) note: Cj0776c%2C probable periplasmic protein%2C len: 340 aa%3B no Hp match. Contains N-terminal signal sequence. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0776c;product=putative periplasmic protein;protein_id=CAL34904.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	728291	728359	.	-	.	ID=id-Cj0776c;Note=1 probable transmembrane helix predicted for Cj0776c by TMHMM2.0 at aa 5-27;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0776c
gi|15791399|ref|NC_002163.1|	EMBL	gene	728500	730530	.	+	.	ID=gene-Cj0777;Name=Cj0777;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0777
gi|15791399|ref|NC_002163.1|	EMBL	CDS	728500	730530	.	+	0	ID=cds-CAL34905.1;Parent=gene-Cj0777;Dbxref=EnsemblGenomes-Gn:Cj0777,EnsemblGenomes-Tr:CAL34905,GOA:Q0PAB3,InterPro:IPR000212,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PAB3,NCBI_GP:CAL34905.1;Name=CAL34905.1;Note=Original (2000) note: Cj0777%2C probable ATP-dependent DNA helicase%2C len: 676 aa%3B similar to many members of the uvrD family of helicases%2C e.g. PCRA_STAAU ATP-dependent helicase PCRA (675 aa)%2C fasta scores%3B opt: 561 z-score: 634.4 E(): 4.9e-28%2C 29.0%25 identity in 694 aa overlap%2C and REP_ECOLI ATP-dependent DNA helicase REP (673 aa)%2C fasta scores%3B opt: 423 z-score: 478.5 E(): 2.4e-19%2C27.3%25 identity in 682 aa overlap. 47.5%25 identity to HP0911. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00580 UvrD-helicase%2CUvrD/REP helicase%3B~Updated (2006) note: Characterisation work carried out within more than one species with marginal identity score. Putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0777;product=putative ATP-dependent DNA helicase;protein_id=CAL34905.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	728515	729927	.	+	.	ID=id-Cj0777;Note=HMMPfam hit to PF00580%2C UvrD/REP helicase%2C score 1.6e-90;gbkey=misc_feature;inference=protein motif:Pfam:PF00580;locus_tag=Cj0777
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	728572	728595	.	+	.	ID=id-Cj0777-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0777
gi|15791399|ref|NC_002163.1|	EMBL	gene	730569	731306	.	+	.	ID=gene-Cj0778;Name=peb2;gbkey=Gene;gene=peb2;gene_biotype=protein_coding;locus_tag=Cj0778
gi|15791399|ref|NC_002163.1|	EMBL	CDS	730569	731306	.	+	0	ID=cds-CAL34906.1;Parent=gene-Cj0778;Dbxref=EnsemblGenomes-Gn:Cj0778,EnsemblGenomes-Tr:CAL34906,UniProtKB/TrEMBL:Q0PAB2,NCBI_GP:CAL34906.1;Name=CAL34906.1;Note=Original (2000) note: Cj0778%2C peb2%2C major antigenic peptide PEB2%2C len: 245 aa%3B 94.9%25 identical to TR:G234576%2Csequenced by direct peptide sequencing%3B see: J. Biol. Chem. 266:16363-16369 (1991). Also similar to TR:Q57410 (EMBL:U39068%2C U15606) Vibrio cholerae accessory colonization factor ACFC (253 aa)%2C fasta scores%3B opt: 430 z-score: 499.2 E(): 1.7e-20%2C 33.9%25 identity in 248 aa overlap%2C and TR:P96759 (EMBL:U82533)E. coli O45 ANM protein (251 aa)%2C fasta scores%3B opt: 417 z-score: 484.4 E(): 1.1e-19%2C 33.2%25 identity in 247 aa overlap. Contains N-terminal signal sequence%3B~Updated (2006) note: Characterised in Campylobacter jejuni in 1991. Putative not added to product function. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:1885571;gbkey=CDS;gene=peb2;locus_tag=Cj0778;product=major antigenic peptide PEB2;protein_id=CAL34906.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	731405	731932	.	+	.	ID=gene-Cj0779;Name=tpx;gbkey=Gene;gene=tpx;gene_biotype=protein_coding;locus_tag=Cj0779
gi|15791399|ref|NC_002163.1|	EMBL	CDS	731405	731932	.	+	0	ID=cds-CAL34907.1;Parent=gene-Cj0779;Dbxref=EnsemblGenomes-Gn:Cj0779,EnsemblGenomes-Tr:CAL34907,GOA:Q9PPE0,InterPro:IPR002065,InterPro:IPR012336,InterPro:IPR013740,InterPro:IPR018219,NCBI_GP:CAL34907.1;Name=CAL34907.1;Note=Original (2000) note: Cj0779%2C tpx%2C probable thiol peroxidase%2C len: 175 aa%3B similar to e.g. TPX_ECOLI thiol peroxidase (EC 1.11.1.-) (167 aa)%2C fasta scores%3B opt: 407 z-score: 489.0 E(): 6.1e-20%2C 44.2%25 identity in 154 aa overlap%2C and TAGD_VIBCH TAGD protein (164 aa)%2C fasta scores%3B opt: 381 z-score: 458.8 E(): 3e-18%2C 39.9%25 identity in 158 aa overlap. 42.2%25 identity to HP0390. Contains PS01265 Tpx family signature%2C and Pfam match to entry PF00578 AhpC-TSA%2C AhpC/TSA family%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Literature search also revealed additional papers with experiments in Campylobacter. Paper identified linking protein to glycoprotein (PMID:12186869). Functional classification -Detoxification%3B~PMID:15632442%2C PMID:12069882%2C PMID:12186869;gbkey=CDS;gene=tpx;inference=protein motif:Prosite:PS01265;locus_tag=Cj0779;product=thiol peroxidase;protein_id=CAL34907.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	731462	731884	.	+	.	ID=id-Cj0779;Note=HMMPfam hit to PF00578%2C AhpC/TSA family%2C score 3.8e-21;gbkey=misc_feature;gene=tpx;inference=protein motif:Pfam:PF00578;locus_tag=Cj0779
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	731648	731683	.	+	.	ID=id-Cj0779-2;Note=PS01265 Tpx family signature;gbkey=misc_feature;gene=tpx;inference=protein motif:Prosite:PS01265;locus_tag=Cj0779
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	731894	731926	.	+	.	ID=id-Cj0779-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=tpx;inference=protein motif:Prosite:PS00013;locus_tag=Cj0779
gi|15791399|ref|NC_002163.1|	EMBL	gene	732179	734953	.	+	.	ID=gene-Cj0780;Name=napA;gbkey=Gene;gene=napA;gene_biotype=protein_coding;locus_tag=Cj0780
gi|15791399|ref|NC_002163.1|	EMBL	CDS	732179	734953	.	+	0	ID=cds-CAL34908.1;Parent=gene-Cj0780;Dbxref=EnsemblGenomes-Gn:Cj0780,EnsemblGenomes-Tr:CAL34908,GOA:Q9PPD9,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR010051,InterPro:IPR019546,InterPro:IPR027467,NCBI_GP:CAL34908.1;Name=CAL34908.1;Note=Original (2000) note: Cj0780%2C napA%2C probable periplasmic nitrate reductase%2C len: 924 aa%3B similar to many e.g. NAPA_ECOLI periplasmic nitrate reductase precursor (EC 1.7.99.4) (828 aa)%2C fasta scores%3B opt: 1331 z-score: 1491.7 E(): 0%2C 51.3%25 identity in 927 aa overlap. No Hp match. Contains PS00551 Prokaryotic molybdopterin oxidoreductases signature 1 and Pfam match to entry PF00384 molybdopterin%2C Prokaryotic molybdopterin oxidoreductases%3B~Updated (2006) note: Characterised within Escherichia coli and Wolinella succinogenes with acceptable identity scores. Putative not added to product function. Literature search identified paper giving further information on product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:12107136%2C PMID:16436444%2C PMID:12823811;gbkey=CDS;gene=napA;inference=protein motif:Prosite:PS00551;locus_tag=Cj0780;product=periplasmic nitrate reductase;protein_id=CAL34908.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	732281	732445	.	+	.	ID=id-Cj0780;Note=HMMPfam hit to PF04879%2C Molybdopterin oxidoreductase Fe4S4 do%2C score 2.3e-23;gbkey=misc_feature;gene=napA;inference=protein motif:Pfam:PF04879;locus_tag=Cj0780
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	732296	732349	.	+	.	ID=id-Cj0780-2;Note=PS00551 Prokaryotic molybdopterin oxidoreductases signature 1;gbkey=misc_feature;gene=napA;inference=protein motif:Prosite:PS00551;locus_tag=Cj0780
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	732452	734014	.	+	.	ID=id-Cj0780-3;Note=HMMPfam hit to PF00384%2C Molybdopterin oxidoreductase%2C score 6.2e-85;gbkey=misc_feature;gene=napA;inference=protein motif:Pfam:PF00384;locus_tag=Cj0780
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	734606	734932	.	+	.	ID=id-Cj0780-4;Note=HMMPfam hit to PF01568%2C Molydopterin dinucleotide binding dom%2C score 3e-32;gbkey=misc_feature;gene=napA;inference=protein motif:Pfam:PF01568;locus_tag=Cj0780
gi|15791399|ref|NC_002163.1|	EMBL	gene	734971	735711	.	+	.	ID=gene-Cj0781;Name=napG;gbkey=Gene;gene=napG;gene_biotype=protein_coding;locus_tag=Cj0781
gi|15791399|ref|NC_002163.1|	EMBL	CDS	734971	735711	.	+	0	ID=cds-CAL34909.1;Parent=gene-Cj0781;Dbxref=EnsemblGenomes-Gn:Cj0781,EnsemblGenomes-Tr:CAL34909,GOA:Q0PAA9,InterPro:IPR001450,InterPro:IPR004494,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q0PAA9,NCBI_GP:CAL34909.1;Name=CAL34909.1;Note=Original (2000) note: Cj0781%2C napG%2C probable ferredoxin%2C len: 246 aa%3B similar to e.g. NAPG_ECOLI ferredoxin-type protein NAPG (231 aa)%2C fasta scores%3B opt: 763 z-score: 884.9 E(): 0%2C 48.2%25 identity in 228 aa overlap%2C and MAUM_METEX methylamine utilization ferredoxin-type protein (220 aa)%2C fasta scores%3B opt: 635 z-score: 738.5 E(): 0%2C 45.7%25 identity in 210 aa overlap. No Hp match. Contains PS00198 4Fe-4S ferredoxins%2Ciron-sulfur binding region signature%2C and 3x Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains%3B~Updated (2006) note: Some characterisation within Escherichia coli and Wolinella succinogenes with acceptable identity score. Putative kept as not fully characterised. Literature search identified paper given further information on product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:12107136%2C PMID:16436444%2C PMID:12823811;gbkey=CDS;gene=napG;inference=protein motif:Prosite:PS00198;locus_tag=Cj0781;product=putative ferredoxin;protein_id=CAL34909.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	734989	735057	.	+	.	ID=id-Cj0781;Note=1 probable transmembrane helix predicted for Cj0781 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;gene=napG;inference=protein motif:TMHMM:2.0;locus_tag=Cj0781
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	735103	735174	.	+	.	ID=id-Cj0781-2;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 6.2e-06;gbkey=misc_feature;gene=napG;inference=protein motif:Pfam:PF00037;locus_tag=Cj0781
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	735124	735159	.	+	.	ID=id-Cj0781-3;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=napG;inference=protein motif:Prosite:PS00198;locus_tag=Cj0781
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	735481	735558	.	+	.	ID=id-Cj0781-4;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.0011;gbkey=misc_feature;gene=napG;inference=protein motif:Pfam:PF00037;locus_tag=Cj0781
gi|15791399|ref|NC_002163.1|	EMBL	gene	735708	736490	.	+	.	ID=gene-Cj0782;Name=napH;gbkey=Gene;gene=napH;gene_biotype=protein_coding;locus_tag=Cj0782
gi|15791399|ref|NC_002163.1|	EMBL	CDS	735708	736490	.	+	0	ID=cds-CAL34910.1;Parent=gene-Cj0782;Dbxref=EnsemblGenomes-Gn:Cj0782,EnsemblGenomes-Tr:CAL34910,GOA:Q0PAA8,InterPro:IPR001450,InterPro:IPR011886,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q0PAA8,NCBI_GP:CAL34910.1;Name=CAL34910.1;Note=Original (2000) note: Cj0782%2C napH%2C probable ferredoxin%2C len: 260 aa%3B similar to e.g. NAPH_ECOLI ferredoxin-type protein NAPH (287 aa)%2C fasta scores%3B opt: 588 z-score: 663.2 E(): 1.2e-29%2C 35.3%25 identity in 255 aa overlap%2C and MAUN_PARDE methylamine utilization ferredoxin-type protein (283 aa)%2C fasta scores%3B opt: 596 z-score: 672.2 E(): 3.8e-30%2C 37.8%25 identity in 251 aa overlap. No Hp ortholog. Contains PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature%2C and Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Putative kept as not fully characterised. Some work carried out within Wolinella succinogenes. Literature search identified paper giving further information on protein product. Functional classification - Energy metabolism - Electron transport%3B~PMID:12107136%2C PMID:16436444%2C PMID:12823811;gbkey=CDS;gene=napH;inference=protein motif:TMHMM:2.0;locus_tag=Cj0782;product=putative ferredoxin;protein_id=CAL34910.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	735744	735803	.	+	.	ID=id-Cj0782;Note=6 probable transmembrane helices predicted for Cj0782 by TMHMM2.0 at aa 13-32%2C 52-74%2C 81-99%2C 119-141%2C148-170 and 174-195;gbkey=misc_feature;gene=napH;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0782;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	735861	735929	.	+	.	ID=id-Cj0782;Note=6 probable transmembrane helices predicted for Cj0782 by TMHMM2.0 at aa 13-32%2C 52-74%2C 81-99%2C 119-141%2C148-170 and 174-195;gbkey=misc_feature;gene=napH;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0782;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	735948	736004	.	+	.	ID=id-Cj0782;Note=6 probable transmembrane helices predicted for Cj0782 by TMHMM2.0 at aa 13-32%2C 52-74%2C 81-99%2C 119-141%2C148-170 and 174-195;gbkey=misc_feature;gene=napH;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0782;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	736062	736130	.	+	.	ID=id-Cj0782;Note=6 probable transmembrane helices predicted for Cj0782 by TMHMM2.0 at aa 13-32%2C 52-74%2C 81-99%2C 119-141%2C148-170 and 174-195;gbkey=misc_feature;gene=napH;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0782;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	736149	736217	.	+	.	ID=id-Cj0782;Note=6 probable transmembrane helices predicted for Cj0782 by TMHMM2.0 at aa 13-32%2C 52-74%2C 81-99%2C 119-141%2C148-170 and 174-195;gbkey=misc_feature;gene=napH;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0782;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	736227	736292	.	+	.	ID=id-Cj0782;Note=6 probable transmembrane helices predicted for Cj0782 by TMHMM2.0 at aa 13-32%2C 52-74%2C 81-99%2C 119-141%2C148-170 and 174-195;gbkey=misc_feature;gene=napH;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0782;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	736296	736367	.	+	.	ID=id-Cj0782-2;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.00013;gbkey=misc_feature;gene=napH;inference=protein motif:Pfam:PF00037;locus_tag=Cj0782
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	736317	736352	.	+	.	ID=id-Cj0782-3;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=napH;inference=protein motif:Prosite:PS00198;locus_tag=Cj0782
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	736389	736460	.	+	.	ID=id-Cj0782-4;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.0015;gbkey=misc_feature;gene=napH;inference=protein motif:Pfam:PF00037;locus_tag=Cj0782
gi|15791399|ref|NC_002163.1|	EMBL	gene	736487	737011	.	+	.	ID=gene-Cj0783;Name=napB;gbkey=Gene;gene=napB;gene_biotype=protein_coding;locus_tag=Cj0783
gi|15791399|ref|NC_002163.1|	EMBL	CDS	736487	737011	.	+	0	ID=cds-CAL34911.1;Parent=gene-Cj0783;Dbxref=EnsemblGenomes-Gn:Cj0783,EnsemblGenomes-Tr:CAL34911,GOA:Q0PAA7,InterPro:IPR005591,InterPro:IPR011031,InterPro:IPR027406,UniProtKB/TrEMBL:Q0PAA7,NCBI_GP:CAL34911.1;Name=CAL34911.1;Note=Original (2000) note: Cj0783%2C napB%2C probable cytochrome C-type protein (periplasmic nitrate reductase small subunit)%2C len: 174 aa%3B similar to e.g. NAPB_ECOLI cytochrome C-type protein NAPB precursor (149 aa)%2C fasta scores%3B opt: 269 z-score: 327.2 E(): 6.3e-11%2C38.1%25 identity in 97 aa overlap. No Hp match. Contains 2x PS00190 Cytochrome c family heme-binding site signature%2CN-terminla signal sequence and PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domain PF03892 Nitrate reductase cytochrome c-type subunit identified within CDS. Further support given to product function. Characterised in Escherichia coli and Wolinella succinogenes with acceptable identity score%2C thus putative not needed. Literature search identified paper given further information on product function. Functional classification - Respiration - Electron transport%3B~PMID:12107136%2C PMID:16436444%2C PMID:12823811;gbkey=CDS;gene=napB;inference=protein motif:Prosite:PS00190;locus_tag=Cj0783;product=periplasmic nitrate reductase small subunit (cytochrome C-type protein);protein_id=CAL34911.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	736499	736957	.	+	.	ID=id-Cj0783;Note=HMMPfam hit to PF03892%2C Nitrate reductase cytochrome c-type subunit%2C score 2.5e-103;gbkey=misc_feature;gene=napB;inference=protein motif:Pfam:PF03892;locus_tag=Cj0783
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	736505	736564	.	+	.	ID=id-Cj0783-2;Note=1 probable transmembrane helix predicted for Cj0783 by TMHMM2.0 at aa 7-26;gbkey=misc_feature;gene=napB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0783
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	736514	736546	.	+	.	ID=id-Cj0783-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=napB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0783
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	736754	736771	.	+	.	ID=id-Cj0783-4;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=napB;inference=protein motif:Prosite:PS00190;locus_tag=Cj0783
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	736880	736897	.	+	.	ID=id-Cj0783-5;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=napB;inference=protein motif:Prosite:PS00190;locus_tag=Cj0783
gi|15791399|ref|NC_002163.1|	EMBL	gene	737016	737930	.	+	.	ID=gene-Cj0784;Name=napL;gbkey=Gene;gene=napL;gene_biotype=protein_coding;locus_tag=Cj0784
gi|15791399|ref|NC_002163.1|	EMBL	CDS	737016	737930	.	+	0	ID=cds-CAL34912.1;Parent=gene-Cj0784;Dbxref=EnsemblGenomes-Gn:Cj0784,EnsemblGenomes-Tr:CAL34912,InterPro:IPR001680,InterPro:IPR015943,InterPro:IPR017986,UniProtKB/TrEMBL:Q0PAA6,NCBI_GP:CAL34912.1;Name=CAL34912.1;Note=Original (2000) note: Cj0784%2C probable periplasmic protein%2C len: 304 aa%3B no Hp match. Contains N-terminal signal sequence%3B~Updated (2006) note: Some characterisation work within Wolinella succinogenes with acceptable identity score. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:12823811;gbkey=CDS;gene=napL;locus_tag=Cj0784;product=putative periplasmic protein;protein_id=CAL34912.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	737923	738261	.	+	.	ID=gene-Cj0785;Name=napD;gbkey=Gene;gene=napD;gene_biotype=protein_coding;locus_tag=Cj0785
gi|15791399|ref|NC_002163.1|	EMBL	CDS	737923	738261	.	+	0	ID=cds-CAL34913.1;Parent=gene-Cj0785;Dbxref=EnsemblGenomes-Gn:Cj0785,EnsemblGenomes-Tr:CAL34913,InterPro:IPR005623,UniProtKB/TrEMBL:Q0PAA5,NCBI_GP:CAL34913.1;Name=CAL34913.1;Note=Original (2000) note: Cj0785%2C napD%2C possible napD protein%2C len: 112 aa%3B very weak similarity to e.g. NAPD_PARDT NAPD protein (112 aa)%2C fasta scores%3B opt: 102 z-score: 146.1 E(): 0.77%2C 22.9%25 identity in 83 aa overlap%2Cand NAPD_ECOLI NAPD protein (87 aa)%2C blastp scores%3B E %3D 4.7e-05%2C 23%25 identity in 72 bp overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03927 NapD protein identified within CDS. Further support given to product function. Some work carried out within Wolinella succinogenes. Putative kept within product function. Literature search identified papers giving further information on protein product. Functional classification - Energy metabolism - Electron transport%3B~PMID:12107136%2C PMID:12823811;gbkey=CDS;gene=napD;inference=protein motif:Pfam:PF03927;locus_tag=Cj0785;product=NapD protein homolog;protein_id=CAL34913.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	737923	738153	.	+	.	ID=id-Cj0785;Note=HMMPfam hit to PF03927%2C NapD protein%2C score 4.9e-34;gbkey=misc_feature;gene=napD;inference=protein motif:Pfam:PF03927;locus_tag=Cj0785
gi|15791399|ref|NC_002163.1|	EMBL	gene	738274	738447	.	+	.	ID=gene-Cj0786;Name=Cj0786;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0786
gi|15791399|ref|NC_002163.1|	EMBL	CDS	738274	738447	.	+	0	ID=cds-CAL34914.1;Parent=gene-Cj0786;Dbxref=EnsemblGenomes-Gn:Cj0786,EnsemblGenomes-Tr:CAL34914,UniProtKB/TrEMBL:Q0PAA4,NCBI_GP:CAL34914.1;Name=CAL34914.1;Note=Original (2000) note: Cj0786%2C small hydrophobic protein%2C len: 57 aa%3B no Hp match%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Functional classification -Unknown;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0786;product=small hydrophobic protein;protein_id=CAL34914.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	738283	738339	.	+	.	ID=id-Cj0786;Note=1 probable transmembrane helix predicted for Cj0786 by TMHMM2.0 at aa 4-22;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0786
gi|15791399|ref|NC_002163.1|	EMBL	gene	738526	738774	.	+	.	ID=gene-Cj0787;Name=Cj0787;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0787
gi|15791399|ref|NC_002163.1|	EMBL	CDS	738526	738774	.	+	0	ID=cds-CAL34915.1;Parent=gene-Cj0787;Dbxref=EnsemblGenomes-Gn:Cj0787,EnsemblGenomes-Tr:CAL34915,InterPro:IPR013026,InterPro:IPR019734,UniProtKB/TrEMBL:Q0PAA3,NCBI_GP:CAL34915.1;Name=CAL34915.1;Note=Original (2000) note: Cj0787%2C unknown%2C len: 82 aa%3B 38.1%25 identity to HP0168%3B~Updated (2006) note: Prosite domain PS50293 TPR_REGION%2C Tetratricopeptide region identified within CDS. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS50293;locus_tag=Cj0787;product=conserved hypothetical protein Cj0787;protein_id=CAL34915.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	738771	739262	.	+	.	ID=gene-Cj0788;Name=Cj0788;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0788
gi|15791399|ref|NC_002163.1|	EMBL	CDS	738771	739262	.	+	0	ID=cds-CAL34916.1;Parent=gene-Cj0788;Dbxref=EnsemblGenomes-Gn:Cj0788,EnsemblGenomes-Tr:CAL34916,UniProtKB/TrEMBL:Q0PAA2,NCBI_GP:CAL34916.1;Name=CAL34916.1;Note=Original (2000) note: Cj0788%2C unknown%2C len: 163 aa%3B 30.8%25 identity to HP0167. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0788;product=hypothetical protein Cj0788;protein_id=CAL34916.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	739231	740349	.	+	.	ID=gene-Cj0789;Name=cca;gbkey=Gene;gene=cca;gene_biotype=protein_coding;locus_tag=Cj0789
gi|15791399|ref|NC_002163.1|	EMBL	CDS	739231	740349	.	+	0	ID=cds-CAL34917.1;Parent=gene-Cj0789;Dbxref=EnsemblGenomes-Gn:Cj0789,EnsemblGenomes-Tr:CAL34917,GOA:Q0PAA1,InterPro:IPR002646,UniProtKB/TrEMBL:Q0PAA1,NCBI_GP:CAL34917.1;Name=CAL34917.1;Note=Original (2000) note: Cj0789%2C probable RNA nucleotidyltransferase%2C len: 372 aa%3Bp similar in C-terminus to C-terminus of e.g. CCA_ECOLI tRNA nucleotidyltransferase (412 aa)%2C fasta scores%3B opt: 343 z-score: 412.9 E(): 1.1e-15%2C 35.4%25 identity in 212 aa overlap%2C and PAPS_BACSU poly(A) polymerase (397 aa)%2C fasta scores%3B opt: 338 z-score: 407.2 E(): 2.2e-15%2C 29.3%25 identity in 294 aa overlap. 24.9%25 identity to HP0640. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF01743 Poly A polymerase family protein identified within CDS. Further support to product function. Product function modified based on updated characterisation naming within Escherichia coli. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:3009457%2C PMID:3516995%2C PMID:15210699;gbkey=CDS;gene=cca;inference=protein motif:Prosite:PS00017;locus_tag=Cj0789;product=putative multifunctional Cca protein;protein_id=CAL34917.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	739429	739452	.	+	.	ID=id-Cj0789;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=cca;inference=protein motif:Prosite:PS00017;locus_tag=Cj0789
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	739483	739938	.	+	.	ID=id-Cj0789-2;Note=HMMPfam hit to PF01743%2C Poly A polymerase family%2Cscore 5.6e-32;gbkey=misc_feature;gene=cca;inference=protein motif:Pfam:PF01743;locus_tag=Cj0789
gi|15791399|ref|NC_002163.1|	EMBL	gene	740346	741170	.	+	.	ID=gene-Cj0790;Name=purU;gbkey=Gene;gene=purU;gene_biotype=protein_coding;locus_tag=Cj0790
gi|15791399|ref|NC_002163.1|	EMBL	CDS	740346	741170	.	+	0	ID=cds-CAL34918.1;Parent=gene-Cj0790;Dbxref=EnsemblGenomes-Gn:Cj0790,EnsemblGenomes-Tr:CAL34918,GOA:Q0PAA0,InterPro:IPR002376,InterPro:IPR004810,UniProtKB/TrEMBL:Q0PAA0,NCBI_GP:CAL34918.1;Name=CAL34918.1;Note=Original (2000) note: Cj0790%2C purU%2C probable formyltetrahydrofolate deformylase%2C len: 274 aa%3B similar to many e.g. PURU_ECOLI formyltetrahydrofolate deformylase (EC 3.5.1.10) (280 aa)%2C fasta scores%3B opt: 952 z-score: 1130.0 E(): 0%2C 52.0%25 identity in 273 aa overlap. 52.6%25 identity to HP1434. Contains Pfam match to entry PF00551 formyl_transf%2C Formyl transferase%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Purine ribonucleotide biosynthesis%3B~PMID:7868604;gbkey=CDS;gene=purU;inference=protein motif:Pfam:PF00551;locus_tag=Cj0790;product=formyltetrahydrofolate deformylase;protein_id=CAL34918.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	740580	741113	.	+	.	ID=id-Cj0790;Note=HMMPfam hit to PF00551%2C Formyl transferase%2C score 4e-55;gbkey=misc_feature;gene=purU;inference=protein motif:Pfam:PF00551;locus_tag=Cj0790
gi|15791399|ref|NC_002163.1|	EMBL	gene	741167	742441	.	-	.	ID=gene-Cj0791c;Name=Cj0791c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0791c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	741167	742441	.	-	0	ID=cds-CAL34919.1;Parent=gene-Cj0791c;Dbxref=EnsemblGenomes-Gn:Cj0791c,EnsemblGenomes-Tr:CAL34919,GOA:Q0PA99,InterPro:IPR000192,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0PA99,NCBI_GP:CAL34919.1;Name=CAL34919.1;Note=Original (2000) note: Cj0791c%2C probable aminotransferase%2C len: 424 aa%3B similar to many members of the nifS family e.g. TR:O32164 (EMBL:Z99120) B. subtilis YURW protein (406 aa)%2C fasta scores%3B opt: 289 z-score: 340.6 E(): 1.1e-11%2C 23.9%25 identity in 431 aa overlap. 45.4%25 identity to HP0405. Contains PS00455 Putative AMP-binding domain signature and PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Prosite:PS00595;locus_tag=Cj0791c;product=putative aminotransferase;protein_id=CAL34919.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	741719	741781	.	-	.	ID=id-Cj0791c;Note=PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00595;locus_tag=Cj0791c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	742163	742198	.	-	.	ID=id-Cj0791c-2;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00455;locus_tag=Cj0791c
gi|15791399|ref|NC_002163.1|	EMBL	gene	742477	743355	.	+	.	ID=gene-Cj0792;Name=Cj0792;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0792
gi|15791399|ref|NC_002163.1|	EMBL	CDS	742477	743355	.	+	0	ID=cds-CAL34920.1;Parent=gene-Cj0792;Dbxref=EnsemblGenomes-Gn:Cj0792,EnsemblGenomes-Tr:CAL34920,GOA:Q0PA98,InterPro:IPR004256,InterPro:IPR011335,InterPro:IPR011856,UniProtKB/TrEMBL:Q0PA98,NCBI_GP:CAL34920.1;Name=CAL34920.1;Note=Original (2000) note: Cj0792%2C unknown%2C len: 292 aa%3B some similarity to hypothetical proteins e.g. YZ04_METJA hypothetical protein MJECL04 (439 aa)%2C fasta scores%3B opt: 175 z-score: 208.0 E(): 0.00027%2C 26.5%25 identity in 309 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03008 Archaea bacterial proteins of unknown function identified within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF03008;locus_tag=Cj0792;product=conserved hypothetical protein Cj0792;protein_id=CAL34920.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	742930	743196	.	+	.	ID=id-Cj0792;Note=HMMPfam hit to PF03008%2C Archaea bacterial proteins of unknown functi%2C score 1.6e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF03008;locus_tag=Cj0792
gi|15791399|ref|NC_002163.1|	EMBL	gene	743359	744378	.	+	.	ID=gene-Cj0793;Name=flgS;gbkey=Gene;gene=flgS;gene_biotype=protein_coding;locus_tag=Cj0793
gi|15791399|ref|NC_002163.1|	EMBL	CDS	743359	744378	.	+	0	ID=cds-CAL34921.1;Parent=gene-Cj0793;Dbxref=EnsemblGenomes-Gn:Cj0793,EnsemblGenomes-Tr:CAL34921,GOA:Q0PA97,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q0PA97,NCBI_GP:CAL34921.1;Name=CAL34921.1;Note=Original (2000) note: Cj0793%2C probable signal transduction histidine kinase%2C len: 339 aa%3B similar to e.g. the C-terminus of ATOS_ECOLI sensor protein ATOS (608 aa)%2C fasta scores%3B opt: 357 z-score: 408.3 E(): 1.9e-15%2C33.3%25 identity in 222 aa overlap. 42.4%25 identity to HP0244. Contains Pfam match to entry PF00512 signal%2CSignal carboxyl-terminal domain%3B~Updated (2006) note: Characterised within Campylobacter jejuni and Helicobacter pylori. Putative not added to product function. Literature search identified papers linking Cj0793 and Cj1024 to a two-component signal transduction system (FlgS/FlgR) that regulates the fla regulon in Campylobacter jejuni (similar to that found in Helicobacter pylori). Functional classification - Signal transduction%3B~PMID:14960570%2C PMID:15231786%2C PMID:14617189;gbkey=CDS;gene=flgS;inference=protein motif:Pfam:PF00512;locus_tag=Cj0793;product=signal transduction histidine kinase;protein_id=CAL34921.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	743749	743943	.	+	.	ID=id-Cj0793;Note=HMMPfam hit to PF00512%2C His Kinase A (phosphoacceptor) domain%2C score 5.3e-09;gbkey=misc_feature;gene=flgS;inference=protein motif:Pfam:PF00512;locus_tag=Cj0793
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	744061	744375	.	+	.	ID=id-Cj0793-2;Note=HMMPfam hit to PF02518%2C Histidine kinase-%2C DNA gyrase B-%2C and HSP90%2C score 1.1e-21;gbkey=misc_feature;gene=flgS;inference=protein motif:Pfam:PF02518;locus_tag=Cj0793
gi|15791399|ref|NC_002163.1|	EMBL	gene	744495	745775	.	+	.	ID=gene-Cj0794;Name=Cj0794;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0794
gi|15791399|ref|NC_002163.1|	EMBL	CDS	744495	745775	.	+	0	ID=cds-CAL34922.1;Parent=gene-Cj0794;Dbxref=EnsemblGenomes-Gn:Cj0794,EnsemblGenomes-Tr:CAL34922,UniProtKB/TrEMBL:Q0PA96,NCBI_GP:CAL34922.1;Name=CAL34922.1;Note=Original (2000) note: Cj0794%2C unknown%2C len: 426 aa%3B no Hp match. Has consecutive regions of near-identity to Cj0814 (73.9%25 identity in 253 aa overlap)%2C Cj0815 (61.6%25 identity in 86 aa overlap) and Cj0816 (63.6%25 identity in 44 aa overlap)%2C which may represent a pseudogene copy of this CDS%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0794;product=hypothetical protein Cj0794;protein_id=CAL34922.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	745833	747260	.	-	.	ID=gene-Cj0795c;Name=murF;gbkey=Gene;gene=murF;gene_biotype=protein_coding;locus_tag=Cj0795c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	745833	747260	.	-	0	ID=cds-CAL34923.1;Parent=gene-Cj0795c;Dbxref=EnsemblGenomes-Gn:Cj0795c,EnsemblGenomes-Tr:CAL34923,GOA:Q0PA95,InterPro:IPR004101,InterPro:IPR005863,InterPro:IPR013221,UniProtKB/TrEMBL:Q0PA95,NCBI_GP:CAL34923.1;Name=CAL34923.1;Note=Original (2000) note: Cj0795c%2C murF%2C possible UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate -- ligase%2C len: 475 aa%3B some similarity to e.g. MURF_BACSU UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diaminopimelate -- ligase (EC 6.3.2.15) (457 aa)%2C fasta scores%3B opt: 235 z-score: 258.7 E(): 4.1e-07%2C 26.7%25 identity in 348 aa overlap. 41.5%25 identity to HP0740%3B~Updated (2006) note: Pfam domains PF01225 Mur ligase family%2C catalytic domain and PF02875 Mur ligase family%2C glutamate ligase domain were identified within CDS. Also%2C three probable transmembrane helices predicted by TMHMM2.0 within CDS. Further support given to product function. Characterisation work carried out within Escherichia coli and Bacillus subtilis with mariginal identity scores. Putative not added to product function. Product function and EC number updated. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:11090285%2C PMID:2668880%2C PMID:9305945;gbkey=CDS;gene=murF;inference=protein motif:TMHMM:2.0;locus_tag=Cj0795c;product=UDP-N-acetylmuramoyl-tripeptide D-alanyl-D-alanine ligase;protein_id=CAL34923.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	746910	746978	.	-	.	ID=id-Cj0795c;Note=3 probable transmembrane helices predicted for Cj0795c by TMHMM2.0 at aa 7-29%2C 49-71 and 95-117;gbkey=misc_feature;gene=murF;inference=protein motif:TMHMM:2.0;locus_tag=Cj0795c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	747048	747116	.	-	.	ID=id-Cj0795c;Note=3 probable transmembrane helices predicted for Cj0795c by TMHMM2.0 at aa 7-29%2C 49-71 and 95-117;gbkey=misc_feature;gene=murF;inference=protein motif:TMHMM:2.0;locus_tag=Cj0795c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	747174	747242	.	-	.	ID=id-Cj0795c;Note=3 probable transmembrane helices predicted for Cj0795c by TMHMM2.0 at aa 7-29%2C 49-71 and 95-117;gbkey=misc_feature;gene=murF;inference=protein motif:TMHMM:2.0;locus_tag=Cj0795c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	745965	746201	.	-	.	ID=id-Cj0795c-2;Note=HMMPfam hit to PF02875%2C Mur ligase family%2Cglutamate ligase doma%2C score 0.0036;gbkey=misc_feature;gene=murF;inference=protein motif:Pfam:PF02875;locus_tag=Cj0795c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	746226	746972	.	-	.	ID=id-Cj0795c-3;Note=HMMPfam hit to PF01225%2C Mur ligase family%2Ccatalytic domain%2C score 3.5e-15;gbkey=misc_feature;gene=murF;inference=protein motif:Pfam:PF01225;locus_tag=Cj0795c
gi|15791399|ref|NC_002163.1|	EMBL	gene	747261	747980	.	-	.	ID=gene-Cj0796c;Name=Cj0796c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0796c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	747261	747980	.	-	0	ID=cds-CAL34924.1;Parent=gene-Cj0796c;Dbxref=EnsemblGenomes-Gn:Cj0796c,EnsemblGenomes-Tr:CAL34924,GOA:Q0PA94,InterPro:IPR029058,UniProtKB/TrEMBL:Q0PA94,NCBI_GP:CAL34924.1;Name=CAL34924.1;Note=Original (2000) note: Cj0796c%2C unknown%2C len: 239 aa%3B 46.3%25 identity to HP0739 (annotated as 2-hydroxy-6-oxohepta-2%2C4-dienoate hydrolase)%3B~Updated (2006) note: Pfam domain PF00561 alpha/beta hydrolase fold and Prosite domain PS50187 Esterase/lipase/thioesterase active site serine identified within CDS. The latter are found in alpha/beta fold hydrolase. Product function modified due to motif match. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS50187;locus_tag=Cj0796c;product=putative hydrolase;protein_id=CAL34924.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	747267	747827	.	-	.	ID=id-Cj0796c;Note=HMMPfam hit to PF00561%2C alpha/beta hydrolase fold%2Cscore 0.0025;gbkey=misc_feature;inference=protein motif:Pfam:PF00561;locus_tag=Cj0796c
gi|15791399|ref|NC_002163.1|	EMBL	gene	747982	748197	.	-	.	ID=gene-Cj0797c;Name=Cj0797c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0797c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	747982	748197	.	-	0	ID=cds-CAL34925.1;Parent=gene-Cj0797c;Dbxref=EnsemblGenomes-Gn:Cj0797c,EnsemblGenomes-Tr:CAL34925,InterPro:IPR006442,UniProtKB/TrEMBL:Q0PA93,NCBI_GP:CAL34925.1;Name=CAL34925.1;Note=Original (2000) note: Cj0797c%2C unknown%2C len: 71 aa%3B weak similarity to TR:O68849 (EMBL:AF055586) ORF10 in Vibrio cholerae integron InVch (80 aa)%2C fasta scores%3B opt: 95 z-score: 151.4 E(): 0.39%2C 39.2%25 identity in 51 aa overlap. No Hp match. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0797c;product=hypothetical protein Cj0797c;protein_id=CAL34925.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	748257	749297	.	-	.	ID=gene-Cj0798c;Name=ddlA;gbkey=Gene;gene=ddlA;gene_biotype=protein_coding;locus_tag=Cj0798c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	748257	749297	.	-	0	ID=cds-CAL34926.1;Parent=gene-Cj0798c;Dbxref=EnsemblGenomes-Gn:Cj0798c,EnsemblGenomes-Tr:CAL34926,GOA:Q9PPC2,InterPro:IPR000291,InterPro:IPR005905,InterPro:IPR011095,InterPro:IPR011127,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,NCBI_GP:CAL34926.1;Name=CAL34926.1;Note=Original (2000) note: Cj0798c%2C ddlA%2C possible D-alanine--D-alanine ligase%2C len: 346 aa%3B similar to e.g. DDLA_ECOLI D-alanine--D-alanine ligase A (EC 6.3.2.4) (364 aa)%2C fasta scores%3B opt: 335 z-score: 386.3 E(): 3.2e-14%2C25.2%25 identity in 322 aa overlap%2C and VANA_ENTFC vancomycin/teicoplanin A-type resistance protein (343 aa)%2Cfasta scores%3B opt: 415 z-score: 477.2 E(): 2.8e-19%2C 27.9%25 identity in 312 aa overlap. 54.3%25 identity to HP0738. Contains PS00843 and PS00844 D-alanine--D-alanine ligase signatures 1 and 2%3B~Updated (2006) note: Pfam domain PF07478 D-ala D-ala ligase C-terminus identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Appropriate motifs present. Putative removed from product function. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:1993184;gbkey=CDS;gene=ddlA;inference=protein motif:Prosite:PS00844;locus_tag=Cj0798c;product=D-alanine--D-alanine ligase;protein_id=CAL34926.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	748320	748916	.	-	.	ID=id-Cj0798c;Note=HMMPfam hit to PF07478%2C D-ala D-ala ligase C-terminus%2C score 3.3e-23;gbkey=misc_feature;gene=ddlA;inference=protein motif:Pfam:PF07478;locus_tag=Cj0798c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	748392	748475	.	-	.	ID=id-Cj0798c-2;Note=PS00844 D-alanine--D-alanine ligase signature 2;gbkey=misc_feature;gene=ddlA;inference=protein motif:Prosite:PS00844;locus_tag=Cj0798c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	748980	749015	.	-	.	ID=id-Cj0798c-3;Note=PS00843 D-alanine--D-alanine ligase signature 1;gbkey=misc_feature;gene=ddlA;inference=protein motif:Prosite:PS00843;locus_tag=Cj0798c
gi|15791399|ref|NC_002163.1|	EMBL	gene	749307	749858	.	-	.	ID=gene-Cj0799c;Name=ruvA;gbkey=Gene;gene=ruvA;gene_biotype=protein_coding;locus_tag=Cj0799c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	749307	749858	.	-	0	ID=cds-CAL34927.1;Parent=gene-Cj0799c;Dbxref=EnsemblGenomes-Gn:Cj0799c,EnsemblGenomes-Tr:CAL34927,GOA:Q9PPC1,InterPro:IPR000085,InterPro:IPR003583,InterPro:IPR010994,InterPro:IPR011114,InterPro:IPR012340,InterPro:IPR013849,NCBI_GP:CAL34927.1;Name=CAL34927.1;Note=Original (2000) note: Cj0799c%2C ruvA%2C probable Holliday junction DNA helicase%2C len: 183 aa%3B simlar to e.g. RUVA_ECOLI holliday junction DNA helicase RUVA (203 aa)%2C fasta scores%3B opt: 283 z-score: 347.2 E(): 4.8e-12%2C31.7%25 identity in 202 aa overlap. 36.6%25 identity to HP0883%3B~Updated (2006) note: Pfam domains PF01330 RuvA N terminal domain and PF07499 RuvA%2C C-terminal domain were both identified within product function. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative kept within product funciton. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:9493263%2C 9442895;gbkey=CDS;gene=ruvA;inference=protein motif:Pfam:PF07499;locus_tag=Cj0799c;product=putative Holliday junction ATP-dependent DNA helicase;protein_id=CAL34927.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	749310	749441	.	-	.	ID=id-Cj0799c;Note=HMMPfam hit to PF07499%2C RuvA%2C C-terminal domain%2Cscore 7.9e-06;gbkey=misc_feature;gene=ruvA;inference=protein motif:Pfam:PF07499;locus_tag=Cj0799c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	749478	749567	.	-	.	ID=id-Cj0799c-2;Note=HMMPfam hit to PF00633%2C Helix-hairpin-helix motif%2Cscore 0.13;gbkey=misc_feature;gene=ruvA;inference=protein motif:Pfam:PF00633;locus_tag=Cj0799c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	749583	749672	.	-	.	ID=id-Cj0799c-3;Note=HMMPfam hit to PF00633%2C Helix-hairpin-helix motif%2Cscore 0.66;gbkey=misc_feature;gene=ruvA;inference=protein motif:Pfam:PF00633;locus_tag=Cj0799c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	749673	749858	.	-	.	ID=id-Cj0799c-4;Note=HMMPfam hit to PF01330%2C RuvA N terminal domain%2Cscore 1.7e-20;gbkey=misc_feature;gene=ruvA;inference=protein motif:Pfam:PF01330;locus_tag=Cj0799c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	749748	749816	.	-	.	ID=id-Cj0799c-5;Note=1 probable transmembrane helix predicted for Cj0799c by TMHMM2.0 at aa 15-37;gbkey=misc_feature;gene=ruvA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0799c
gi|15791399|ref|NC_002163.1|	EMBL	gene	749834	751693	.	-	.	ID=gene-Cj0800c;Name=Cj0800c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0800c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	749834	751693	.	-	0	ID=cds-CAL34928.1;Parent=gene-Cj0800c;Dbxref=EnsemblGenomes-Gn:Cj0800c,EnsemblGenomes-Tr:CAL34928,InterPro:IPR005646,UniProtKB/TrEMBL:Q0PA90,NCBI_GP:CAL34928.1;Name=CAL34928.1;Note=Original (2000) note: Cj0800c%2C unknown%2C len: 619 aa%3B 24.7%25 identity to HP0884. Also similar to Cj0044c (28.6%25 identity in 622 aa overlap)%3B~Updated (2006) note: Prosite domain PS00389 ATPase%2CF1 complex%2C OSCP/delta subunit signature identified within CDS. Product modified to more specific family member due to motif match. Not fully characterised so putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS00389;locus_tag=Cj0800c;product=putative ATPase;protein_id=CAL34928.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	750710	750769	.	-	.	ID=id-Cj0800c;Note=PS00389 ATP synthase delta (OSCP) subunit signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00389;locus_tag=Cj0800c
gi|15791399|ref|NC_002163.1|	EMBL	gene	751797	753248	.	+	.	ID=gene-Cj0801;Name=Cj0801;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0801
gi|15791399|ref|NC_002163.1|	EMBL	CDS	751797	753248	.	+	0	ID=cds-CAL34929.1;Parent=gene-Cj0801;Dbxref=EnsemblGenomes-Gn:Cj0801,EnsemblGenomes-Tr:CAL34929,InterPro:IPR004268,UniProtKB/TrEMBL:Q0PA89,NCBI_GP:CAL34929.1;Name=CAL34929.1;Note=Original (2000) note: Cj0801%2C probable integral membrane protein%2C len: 483 aa%3B similar to MVIN_SALTY virulence factor MVIN (524 aa)%2C fasta scores%3B opt: 725 z-score: 828.0 E(): 0%2C 32.4%25 identity in 463 aa overlap%2Cand to homologs from other organisms. 45.8%25 identity to HP0885%3B~Updated (2006) note: Eleven probable transmembrane helices predicted by TMHMM2.0. Also%2C Pfam domain PF03023 MviN-like protein identified within CDS. Still not functionally characterised. Homolog designation kept within product function. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0801;product=putative integral membrane protein (MviN homolog);protein_id=CAL34929.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	751809	751868	.	+	.	ID=id-Cj0801;Note=11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24%2C 28-47%2C 79-101%2C 123-145%2C152-171%2C 181-203%2C 310-332%2C 347-369%2C 382-404%2C 408-430 and 442-464;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0801;part=1/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	751878	751937	.	+	.	ID=id-Cj0801;Note=11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24%2C 28-47%2C 79-101%2C 123-145%2C152-171%2C 181-203%2C 310-332%2C 347-369%2C 382-404%2C 408-430 and 442-464;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0801;part=2/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	752031	752099	.	+	.	ID=id-Cj0801;Note=11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24%2C 28-47%2C 79-101%2C 123-145%2C152-171%2C 181-203%2C 310-332%2C 347-369%2C 382-404%2C 408-430 and 442-464;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0801;part=3/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	752163	752231	.	+	.	ID=id-Cj0801;Note=11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24%2C 28-47%2C 79-101%2C 123-145%2C152-171%2C 181-203%2C 310-332%2C 347-369%2C 382-404%2C 408-430 and 442-464;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0801;part=4/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	752250	752309	.	+	.	ID=id-Cj0801;Note=11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24%2C 28-47%2C 79-101%2C 123-145%2C152-171%2C 181-203%2C 310-332%2C 347-369%2C 382-404%2C 408-430 and 442-464;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0801;part=5/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	752337	752405	.	+	.	ID=id-Cj0801;Note=11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24%2C 28-47%2C 79-101%2C 123-145%2C152-171%2C 181-203%2C 310-332%2C 347-369%2C 382-404%2C 408-430 and 442-464;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0801;part=6/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	752724	752792	.	+	.	ID=id-Cj0801;Note=11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24%2C 28-47%2C 79-101%2C 123-145%2C152-171%2C 181-203%2C 310-332%2C 347-369%2C 382-404%2C 408-430 and 442-464;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0801;part=7/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	752835	752903	.	+	.	ID=id-Cj0801;Note=11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24%2C 28-47%2C 79-101%2C 123-145%2C152-171%2C 181-203%2C 310-332%2C 347-369%2C 382-404%2C 408-430 and 442-464;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0801;part=8/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	752940	753008	.	+	.	ID=id-Cj0801;Note=11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24%2C 28-47%2C 79-101%2C 123-145%2C152-171%2C 181-203%2C 310-332%2C 347-369%2C 382-404%2C 408-430 and 442-464;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0801;part=9/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	753018	753086	.	+	.	ID=id-Cj0801;Note=11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24%2C 28-47%2C 79-101%2C 123-145%2C152-171%2C 181-203%2C 310-332%2C 347-369%2C 382-404%2C 408-430 and 442-464;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0801;part=10/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	753120	753188	.	+	.	ID=id-Cj0801;Note=11 probable transmembrane helices predicted for Cj0801 by TMHMM2.0 at aa 5-24%2C 28-47%2C 79-101%2C 123-145%2C152-171%2C 181-203%2C 310-332%2C 347-369%2C 382-404%2C 408-430 and 442-464;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0801;part=11/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	751884	753233	.	+	.	ID=id-Cj0801-2;Note=HMMPfam hit to PF03023%2C MviN-like protein%2C score 1.6e-84;gbkey=misc_feature;inference=protein motif:Pfam:PF03023;locus_tag=Cj0801
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	752469	752516	.	+	.	ID=id-Cj0801-3;Note=PS00225 Crystallins beta and gamma 'Greek key' motif signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00225;locus_tag=Cj0801
gi|15791399|ref|NC_002163.1|	EMBL	gene	753248	754636	.	+	.	ID=gene-Cj0802;Name=cysS;gbkey=Gene;gene=cysS;gene_biotype=protein_coding;locus_tag=Cj0802
gi|15791399|ref|NC_002163.1|	EMBL	CDS	753248	754636	.	+	0	ID=cds-CAL34930.1;Parent=gene-Cj0802;Dbxref=EnsemblGenomes-Gn:Cj0802,EnsemblGenomes-Tr:CAL34930,GOA:Q9PPB8,InterPro:IPR009080,InterPro:IPR014729,InterPro:IPR015273,InterPro:IPR015803,InterPro:IPR024909,NCBI_GP:CAL34930.1;Name=CAL34930.1;Note=Original (2000) note: Cj0802%2C cysS%2C probable cysteinyl-tRNA synthetase%2C len: 462 aa%3B similar to many e.g. SYC_ECOLI cysteinyl-tRNA synthetase (EC 6.1.1.16) (461 aa)%2C fasta scores%3B opt: 900 z-score: 1011.4 E(): 0%2C37.0%25 identity in 470 aa overlap. 50.2%25 identity to HP0886%3B~Updated (2006) note: Pfam domain PF01406 tRNA synthetases class I (C) catalytic domain identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative kept within product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:2014166;gbkey=CDS;gene=cysS;inference=protein motif:Pfam:PF01406;locus_tag=Cj0802;product=cysteinyl-tRNA synthetase;protein_id=CAL34930.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	753275	754159	.	+	.	ID=id-Cj0802;Note=HMMPfam hit to PF01406%2C tRNA synthetases class I (C) catalytic d%2C score 5.6e-134;gbkey=misc_feature;gene=cysS;inference=protein motif:Pfam:PF01406;locus_tag=Cj0802
gi|15791399|ref|NC_002163.1|	EMBL	gene	754629	756371	.	+	.	ID=gene-Cj0803;Name=msbA;gbkey=Gene;gene=msbA;gene_biotype=protein_coding;locus_tag=Cj0803
gi|15791399|ref|NC_002163.1|	EMBL	CDS	754629	756371	.	+	0	ID=cds-CAL34931.1;Parent=gene-Cj0803;Dbxref=EnsemblGenomes-Gn:Cj0803,EnsemblGenomes-Tr:CAL34931,GOA:Q0PA87,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PA87,NCBI_GP:CAL34931.1;Name=CAL34931.1;Note=Original (2000) note: Cj0803%2C msbA%2C probable lipid export ABC transport protein%2C len: 580 aa%3B similar to lipid export protein MSBA_ECOLI probable transport ATP-binding protein MSBA (582 aa)%2C fasta scores%3B opt: 1032 z-score: 1135.9 E(): 0%2C 29.6%25 identity in 575 aa overlap%2Cand to other members of the mutidrug-resistance family of ABC transporters. 42.7%25 identity to HP1082. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Characterised in Escherichia coli with marginal identity score. Appropriate motifs present. Putative not needed to product function. Functional classification - Transport/binding proteins -Other%3B~PMID:16159769%2C PMID:12119303;gbkey=CDS;gene=msbA;inference=protein motif:Prosite:PS00211;locus_tag=Cj0803;product=lipid export ABC transport protein;protein_id=CAL34931.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	754701	755516	.	+	.	ID=id-Cj0803;Note=HMMPfam hit to PF00664%2C ABC transporter transmembrane region%2C score 8.8e-42;gbkey=misc_feature;gene=msbA;inference=protein motif:Pfam:PF00664;locus_tag=Cj0803
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	754701	754769	.	+	.	ID=id-Cj0803-2;Note=4 probable transmembrane helices predicted for Cj0803 by TMHMM2.0 at aa 25-47%2C 60-82%2C 165-184 and 272-294;gbkey=misc_feature;gene=msbA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0803;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	754806	754874	.	+	.	ID=id-Cj0803-2;Note=4 probable transmembrane helices predicted for Cj0803 by TMHMM2.0 at aa 25-47%2C 60-82%2C 165-184 and 272-294;gbkey=misc_feature;gene=msbA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0803;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	755121	755180	.	+	.	ID=id-Cj0803-2;Note=4 probable transmembrane helices predicted for Cj0803 by TMHMM2.0 at aa 25-47%2C 60-82%2C 165-184 and 272-294;gbkey=misc_feature;gene=msbA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0803;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	755442	755510	.	+	.	ID=id-Cj0803-2;Note=4 probable transmembrane helices predicted for Cj0803 by TMHMM2.0 at aa 25-47%2C 60-82%2C 165-184 and 272-294;gbkey=misc_feature;gene=msbA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0803;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	755724	756272	.	+	.	ID=id-Cj0803-3;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 4.9e-51;gbkey=misc_feature;gene=msbA;inference=protein motif:Pfam:PF00005;locus_tag=Cj0803
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	755745	755768	.	+	.	ID=id-Cj0803-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=msbA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0803
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	756051	756095	.	+	.	ID=id-Cj0803-5;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=msbA;inference=protein motif:Prosite:PS00211;locus_tag=Cj0803
gi|15791399|ref|NC_002163.1|	EMBL	gene	756403	757461	.	+	.	ID=gene-Cj0804;Name=pyrD;gbkey=Gene;gene=pyrD;gene_biotype=protein_coding;locus_tag=Cj0804
gi|15791399|ref|NC_002163.1|	EMBL	CDS	756403	757461	.	+	0	ID=cds-CAL34932.1;Parent=gene-Cj0804;Dbxref=EnsemblGenomes-Gn:Cj0804,EnsemblGenomes-Tr:CAL34932,GOA:Q0PA86,InterPro:IPR001295,InterPro:IPR005719,InterPro:IPR012135,InterPro:IPR013785,UniProtKB/TrEMBL:Q0PA86,NCBI_GP:CAL34932.1;Name=CAL34932.1;Note=Original (2000) note: Cj0804%2C pyrD%2C probable dihydroorotate dehydrogenase%2C len: 352 aa%3B similar to many e.g. PYRD_ECOLI dihydroorotate dehydrogenase (EC 1.3.3.1) (336 aa)%2C fasta scores%3B opt: 583 z-score: 682.2 E(): 1.1e-30%2C 39.5%25 identity in 339 aa overlap. 47.6%25 identity to HP1011. Contains PS00912 Dihydroorotate dehydrogenase signature 2%2C and Pfam match to entry PF01180 DHOdehase%2CDihydroorotate dehydrogenase (DHOdehase)%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Pyrimidine ribonucleotide biosynthesis%3B~PMID:2992959%2C PMID:6370696;gbkey=CDS;gene=pyrD;inference=protein motif:Prosite:PS00912;locus_tag=Cj0804;product=dihydroorotate dehydrogenase;protein_id=CAL34932.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	756550	757407	.	+	.	ID=id-Cj0804;Note=HMMPfam hit to PF01180%2C Dihydroorotate dehydrogenase%2C score 6.1e-84;gbkey=misc_feature;gene=pyrD;inference=protein motif:Pfam:PF01180;locus_tag=Cj0804
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	756658	756717	.	+	.	ID=id-Cj0804-2;Note=PS00911 Dihydroorotate dehydrogenase signature 1;gbkey=misc_feature;gene=pyrD;inference=protein motif:Prosite:PS00911;locus_tag=Cj0804
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	757261	757323	.	+	.	ID=id-Cj0804-3;Note=PS00912 Dihydroorotate dehydrogenase signature 2;gbkey=misc_feature;gene=pyrD;inference=protein motif:Prosite:PS00912;locus_tag=Cj0804
gi|15791399|ref|NC_002163.1|	EMBL	gene	757458	758708	.	+	.	ID=gene-Cj0805;Name=Cj0805;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0805
gi|15791399|ref|NC_002163.1|	EMBL	CDS	757458	758708	.	+	0	ID=cds-CAL34933.1;Parent=gene-Cj0805;Dbxref=EnsemblGenomes-Gn:Cj0805,EnsemblGenomes-Tr:CAL34933,GOA:Q0PA85,InterPro:IPR001431,InterPro:IPR007863,InterPro:IPR011237,InterPro:IPR011249,InterPro:IPR011765,UniProtKB/TrEMBL:Q0PA85,NCBI_GP:CAL34933.1;Name=CAL34933.1;Note=Original (2000) note: Cj0805%2C probable zinc protease%2C len: 416 aa%3B similar to many members of the insulinase family e.g. Y4WA_RHISN hypothetical zinc protease Y4WA (512 aa)%2C fasta scores%3B opt: 664 z-score: 739.8 E(): 0%2C 31.8%25 identity in 415 aa overlap. 57.2%25 identity to HP1012. Contains PS00143 Insulinase family%2Czinc-binding region signature%2C and Pfam match to entry PF00675 Insulinase%2C Insulinase (proteinase M16)%3B~Updated (2006) note: Pfam domain PF05193 Peptidase M16 inactive domain identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Proteins%2C peptides and glycopeptides;gbkey=CDS;inference=protein motif:Prosite:PS00143;locus_tag=Cj0805;product=putative zinc protease;protein_id=CAL34933.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	757503	757919	.	+	.	ID=id-Cj0805;Note=HMMPfam hit to PF00675%2C Insulinase (Peptidase family M16)%2C score 1.2e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF00675;locus_tag=Cj0805
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	757563	757634	.	+	.	ID=id-Cj0805-2;Note=PS00143 Insulinase family%2C zinc-binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00143;locus_tag=Cj0805
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	757962	758498	.	+	.	ID=id-Cj0805-3;Note=HMMPfam hit to PF05193%2C Peptidase M16 inactive domain%2C score 4.8e-42;gbkey=misc_feature;inference=protein motif:Pfam:PF05193;locus_tag=Cj0805
gi|15791399|ref|NC_002163.1|	EMBL	gene	758701	759597	.	+	.	ID=gene-Cj0806;Name=dapA;gbkey=Gene;gene=dapA;gene_biotype=protein_coding;locus_tag=Cj0806
gi|15791399|ref|NC_002163.1|	EMBL	CDS	758701	759597	.	+	0	ID=cds-CAL34934.1;Parent=gene-Cj0806;Dbxref=EnsemblGenomes-Gn:Cj0806,EnsemblGenomes-Tr:CAL34934,GOA:Q9PPB4,InterPro:IPR002220,InterPro:IPR005263,InterPro:IPR013785,InterPro:IPR020624,InterPro:IPR020625,PDB:3LER,PDB:3M5V,NCBI_GP:CAL34934.1;Name=CAL34934.1;Note=Original (2000) note: Cj0806%2C dapA%2C probable dihydrodipicolinate synthase%2C len: 298 aa%3B simimlar to many e.g. DAPA_ECOLI dihydrodipicolinate synthase (EC 4.2.1.52) (292 aa)%2C fasta scores%3B opt: 697 z-score: 792.3 E(): 0%2C 38.1%25 identity in 291 aa overlap. 56.5%25 identity to HP1013. Contains PS00665 and PS00666 Dihydrodipicolinate synthetase signatures 1 and 2%2C and Pfam match to entry PF00701 DHDPS%2C Dihydrodipicolinate synthetase%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Putative not needed to product function. Functional classification - Amino acid biosynthesis - Aspartate family%3B~PMID:3514578%2C PMID:15158272;gbkey=CDS;gene=dapA;inference=protein motif:Prosite:PS00666;locus_tag=Cj0806;product=dihydrodipicolinate synthase;protein_id=CAL34934.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	758713	759582	.	+	.	ID=id-Cj0806;Note=HMMPfam hit to PF00701%2C Dihydrodipicolinate synthetase family%2C score 2e-106;gbkey=misc_feature;gene=dapA;inference=protein motif:Pfam:PF00701;locus_tag=Cj0806
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	758821	758874	.	+	.	ID=id-Cj0806-2;Note=PS00665 Dihydrodipicolinate synthetase signature 1;gbkey=misc_feature;gene=dapA;inference=protein motif:Prosite:PS00665;locus_tag=Cj0806
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	759109	759204	.	+	.	ID=id-Cj0806-3;Note=PS00666 Dihydrodipicolinate synthetase signature 2;gbkey=misc_feature;gene=dapA;inference=protein motif:Prosite:PS00666;locus_tag=Cj0806
gi|15791399|ref|NC_002163.1|	EMBL	gene	759597	760376	.	+	.	ID=gene-Cj0807;Name=Cj0807;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0807
gi|15791399|ref|NC_002163.1|	EMBL	CDS	759597	760376	.	+	0	ID=cds-CAL34935.1;Parent=gene-Cj0807;Dbxref=EnsemblGenomes-Gn:Cj0807,EnsemblGenomes-Tr:CAL34935,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:Q0PA83,NCBI_GP:CAL34935.1;Name=CAL34935.1;Note=Updated (2006) note: Similarity to more than one genus. Putative kept within product function%3B~Original (2000) note: Cj0807%2C probable oxidoreductase%2C len: 259 aa%3B similar to members of the short-chain dehydrogenase/reductase family e.g. SOU1_CANAL sorbitol utilization protein SOU1 (281 aa)%2C fasta scores%3B opt: 422 z-score: 477.6 E(): 2.6e-19%2C 32.9%25 identity in 258 aa overlap%2C and HDHA_ECOLI 7-alpha-hydroxysteroid dehydrogenase (255 aa)%2C fasta scores%3B opt: 377 z-score: 428.4 E(): 1.4e-16%2C 34.3%25 identity in 254 aa overlap. 65.3%25 identity to HP1014. Contains Pfam matches to entry PF00106 adh_short%2C Alcohol/other dehydrogenases%2C short chain type%2C and to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus. Also contains two polymorphic G/A bases giving a K/E polymorphism at aa 198 and a T/A polymorphism at aa 206. These are not highly conserved positions in related proteins. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF00678;locus_tag=Cj0807;product=putative oxidoreductase;protein_id=CAL34935.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	759624	760364	.	+	.	ID=id-Cj0807;Note=HMMPfam hit to PF00106%2C short chain dehydrogenase%2Cscore 1e-43;gbkey=misc_feature;inference=protein motif:Pfam:PF00106;locus_tag=Cj0807
gi|15791399|ref|NC_002163.1|	EMBL	gene	760417	760722	.	-	.	ID=gene-Cj0808c;Name=Cj0808c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0808c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	760417	760722	.	-	0	ID=cds-CAL34936.1;Parent=gene-Cj0808c;Dbxref=EnsemblGenomes-Gn:Cj0808c,EnsemblGenomes-Tr:CAL34936,UniProtKB/TrEMBL:Q0PA82,NCBI_GP:CAL34936.1;Name=CAL34936.1;Note=Original (2000) note: Cj0808c%2C small hydrophobic protein%2C len: 101 aa%3B no Hp match%3B~Updated (2006) note: Three probable transmembrane helices predicted by TMHMM2.0. Functional classification -Unknown;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0808c;product=small hydrophobic protein;protein_id=CAL34936.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	760435	760503	.	-	.	ID=id-Cj0808c;Note=3 probable transmembrane helices predicted for Cj0808c by TMHMM2.0 at aa 5-26%2C 47-69 and 74-96;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0808c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	760516	760584	.	-	.	ID=id-Cj0808c;Note=3 probable transmembrane helices predicted for Cj0808c by TMHMM2.0 at aa 5-26%2C 47-69 and 74-96;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0808c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	760645	760710	.	-	.	ID=id-Cj0808c;Note=3 probable transmembrane helices predicted for Cj0808c by TMHMM2.0 at aa 5-26%2C 47-69 and 74-96;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0808c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	gene	760734	761330	.	-	.	ID=gene-Cj0809c;Name=Cj0809c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0809c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	760734	761330	.	-	0	ID=cds-CAL34937.1;Parent=gene-Cj0809c;Dbxref=EnsemblGenomes-Gn:Cj0809c,EnsemblGenomes-Tr:CAL34937,GOA:Q0PA81,InterPro:IPR001279,UniProtKB/TrEMBL:Q0PA81,NCBI_GP:CAL34937.1;Name=CAL34937.1;Note=Original (2000) note: Cj0809c%2C possible hydrolase%2Clen: 198 aa%3B similar to many hypothetical proteins belonging to the glyoxalase II family e.g. YQGX_BACSU (211 aa)%2C fasta scores%3B opt: 289 z-score: 365.7 E(): 4.5e-13%2C32.8%25 identity in 204 aa overlap. 44.3%25 identity to HP0813. Contains Pfam match to entry PF00753 lactamase_B%2CMetallo-beta-lactamase superfamily%3B~Updated (2006) note: No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Pfam:PF00753;locus_tag=Cj0809c;product=putative hydrolase;protein_id=CAL34937.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	760797	761297	.	-	.	ID=id-Cj0809c;Note=HMMPfam hit to PF00753%2C Metallo-beta-lactamase superfamily%2C score 3.6e-34;gbkey=misc_feature;inference=protein motif:Pfam:PF00753;locus_tag=Cj0809c
gi|15791399|ref|NC_002163.1|	EMBL	gene	761404	762144	.	+	.	ID=gene-Cj0810;Name=nadE;gbkey=Gene;gene=nadE;gene_biotype=protein_coding;locus_tag=Cj0810
gi|15791399|ref|NC_002163.1|	EMBL	CDS	761404	762144	.	+	0	ID=cds-CAL34938.1;Parent=gene-Cj0810;Dbxref=EnsemblGenomes-Gn:Cj0810,EnsemblGenomes-Tr:CAL34938,GOA:Q9PPB0,InterPro:IPR003694,InterPro:IPR014729,InterPro:IPR022310,InterPro:IPR022926,PDB:3P52,NCBI_GP:CAL34938.1;Name=CAL34938.1;Note=Original (2000) note: Cj0810%2C nadE%2C possible NH(3)-dependent NAD(+) synthetase%2C len: 246 aa%3B similar to many putative nadE prteins%2C and to NADE_ECOLI NH(3)-dependent NAD(+) synthetase (EC 6.3.5.1) (275 aa)%2Cfasta scores%3B opt: 208 z-score: 252.5 E(): 9.1e-07%2C 28.3%25 identity in 230 aa overlap. 47.2%25 identity to HP0329%3B~Updated (2006) note: Pfam domain PF02540 NAD synthase identified within CDS. Further support given to product function. Characterised within Escherichia coli and Bacillus subtilis with marginal identity scores. Appropriate motifs present. Putative removed from product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Pyridine nucleotide%3B~PMID:12077433%2C PMID:11375500;gbkey=CDS;gene=nadE;inference=protein motif:Pfam:PF02540;locus_tag=Cj0810;product=NH(3)-dependent NAD(+) synthetase;protein_id=CAL34938.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	761569	762138	.	+	.	ID=id-Cj0810;Note=HMMPfam hit to PF02540%2C NAD synthase%2C score 7.9e-62;gbkey=misc_feature;gene=nadE;inference=protein motif:Pfam:PF02540;locus_tag=Cj0810
gi|15791399|ref|NC_002163.1|	EMBL	gene	762148	763074	.	+	.	ID=gene-Cj0811;Name=lpxK;gbkey=Gene;gene=lpxK;gene_biotype=protein_coding;locus_tag=Cj0811
gi|15791399|ref|NC_002163.1|	EMBL	CDS	762148	763074	.	+	0	ID=cds-CAL34939.1;Parent=gene-Cj0811;Dbxref=EnsemblGenomes-Gn:Cj0811,EnsemblGenomes-Tr:CAL34939,GOA:Q9PPA9,InterPro:IPR003758,NCBI_GP:CAL34939.1;Name=CAL34939.1;Note=Original (2000) note: Cj0811%2C lpxK%2C possible tetraacyldisaccharide 4'-kinase%2C len: 308 aa%3B similar to hypothetical proteins and e.g. LPXK_ECOLI tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (328 aa)%2Cfasta scores%3B opt: 182 z-score: 221.7 E(): 4.7e-05%2C 24.9%25 identity in 289 aa overlap. 41.3%25 identity to HP0328%3B~Updated (2006) note: Pfam domain PF02606 Tetraacyldisaccharide-1-P 4'-kinase identified within CDS. One probable transmembrane helix predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative removed from product function. Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:9575203;gbkey=CDS;gene=lpxK;inference=protein motif:TMHMM:2.0;locus_tag=Cj0811;product=tetraacyldisaccharide 4'-kinase;protein_id=CAL34939.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	762187	763071	.	+	.	ID=id-Cj0811;Note=HMMPfam hit to PF02606%2C Tetraacyldisaccharide-1-P 4'-kinase%2C score 1e-24;gbkey=misc_feature;gene=lpxK;inference=protein motif:Pfam:PF02606;locus_tag=Cj0811
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	762217	762285	.	+	.	ID=id-Cj0811-2;Note=1 probable transmembrane helix predicted for Cj0811 by TMHMM2.0 at aa 24-46;gbkey=misc_feature;gene=lpxK;inference=protein motif:TMHMM:2.0;locus_tag=Cj0811
gi|15791399|ref|NC_002163.1|	EMBL	gene	763071	764483	.	+	.	ID=gene-Cj0812;Name=thrC;gbkey=Gene;gene=thrC;gene_biotype=protein_coding;locus_tag=Cj0812
gi|15791399|ref|NC_002163.1|	EMBL	CDS	763071	764483	.	+	0	ID=cds-CAL34940.1;Parent=gene-Cj0812;Dbxref=EnsemblGenomes-Gn:Cj0812,EnsemblGenomes-Tr:CAL34940,GOA:Q0PA78,InterPro:IPR000634,InterPro:IPR001926,InterPro:IPR004450,InterPro:IPR029144,UniProtKB/TrEMBL:Q0PA78,NCBI_GP:CAL34940.1;Name=CAL34940.1;Note=Updated (2006) note: Characterised within Pseudomonas aeruginosa with acceptable identity score. Appropriate motifs present. Putative not added to product function%3B~Original (2000) note: Cj0812%2C thrC%2C probable threonine synthase%2C len: 470 aa%3B similar to e.g. THRC_YEAST threonine synthase (EC 4.2.99.2) (514 aa)%2Cfasta scores%3B opt: 595 z-score: 671.2 E(): 4.3e-30%2C 33.6%25 identity in 464 aa overlap%2C and THRC_PSEAE (470 aa)%2C fasta scores%3B opt: 647 z-score: 730.2 E(): 0%2C 32.3%25 identity in 434 aa overlap. 43.5%25 identity to HP0098. Contains PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site%2C and Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependant enzymes%3B~PMID:1333566;gbkey=CDS;gene=thrC;inference=protein motif:Prosite:PS00165;locus_tag=Cj0812;product=threonine synthase. Functional classification-Amino acid biosynthesis-Aspartate family;protein_id=CAL34940.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	763293	764165	.	+	.	ID=id-Cj0812;Note=HMMPfam hit to PF00291%2C Pyridoxal-phosphate dependent enzyme%2C score 4e-08;gbkey=misc_feature;gene=thrC;inference=protein motif:Pfam:PF00291;locus_tag=Cj0812
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	763359	763403	.	+	.	ID=id-Cj0812-2;Note=PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=thrC;inference=protein motif:Prosite:PS00165;locus_tag=Cj0812
gi|15791399|ref|NC_002163.1|	EMBL	gene	764480	765199	.	+	.	ID=gene-Cj0813;Name=kdsB;gbkey=Gene;gene=kdsB;gene_biotype=protein_coding;locus_tag=Cj0813
gi|15791399|ref|NC_002163.1|	EMBL	CDS	764480	765199	.	+	0	ID=cds-CAL34941.1;Parent=gene-Cj0813;Dbxref=EnsemblGenomes-Gn:Cj0813,EnsemblGenomes-Tr:CAL34941,GOA:Q0PA77,InterPro:IPR003329,InterPro:IPR004528,InterPro:IPR029044,UniProtKB/TrEMBL:Q0PA77,NCBI_GP:CAL34941.1;Name=CAL34941.1;Note=Original (2000) note: Cj0813%2C kdsB%2C probable 3-deoxy-manno-octulosonate cytidylyltransferase%2C len: 239 aa%3B similar to e.g. KDSB_ECOLI 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) (247 aa)%2C fasta scores%3B opt: 519 z-score: 611.2 E(): 9.6e-27%2C 39.7%25 identity in 242 aa overlap. 47.9%25 identity to HP0230%3B~Updated (2006) note: Pfam domain PF02348 Cytidylyltransferase identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:3023327;gbkey=CDS;gene=kdsB;inference=protein motif:Pfam:PF02348;locus_tag=Cj0813;product=3-deoxy-manno-octulosonate cytidylyltransferase;protein_id=CAL34941.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	764480	765112	.	+	.	ID=id-Cj0813;Note=HMMPfam hit to PF02348%2C Cytidylyltransferase%2C score 1.9e-54;gbkey=misc_feature;gene=kdsB;inference=protein motif:Pfam:PF02348;locus_tag=Cj0813
gi|15791399|ref|NC_002163.1|	EMBL	gene	765304	766059	.	+	.	ID=gene-Cj0814;Name=Cj0814;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0814
gi|15791399|ref|NC_002163.1|	EMBL	CDS	765304	766059	.	+	0	ID=cds-CAL34942.1;Parent=gene-Cj0814;Dbxref=EnsemblGenomes-Gn:Cj0814,EnsemblGenomes-Tr:CAL34942,UniProtKB/TrEMBL:Q0PA76,NCBI_GP:CAL34942.1;Name=CAL34942.1;Note=Original (2000) note: Cj0814%2C unknown%2C len: 251 aa%3B no Hp match. Almost identical to the N-teminus of Cj0794%3B similarity continues in Cj0815 and Cj0816: may represent a pseudogene fragment%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria;gbkey=CDS;locus_tag=Cj0814;product=hypothetical protein Cj0814. Functional classification-Unknown;protein_id=CAL34942.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	766075	766419	.	+	.	ID=gene-Cj0815;Name=Cj0815;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0815
gi|15791399|ref|NC_002163.1|	EMBL	CDS	766075	766419	.	+	0	ID=cds-CAL34943.1;Parent=gene-Cj0815;Dbxref=EnsemblGenomes-Gn:Cj0815,EnsemblGenomes-Tr:CAL34943,UniProtKB/TrEMBL:Q0PA75,NCBI_GP:CAL34943.1;Name=CAL34943.1;Note=Original (2000) note: Cj0815%2C unknown%2C len: 114 aa%3B no Hp match. Almost identical to the centre of Cj0794%3B similarity continues from Cj0814 and into Cj0816: may represent a pseudogene fragment. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0815;product=hypothetical protein Cj0815;protein_id=CAL34943.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	766427	766597	.	+	.	ID=gene-Cj0816;Name=Cj0816;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0816
gi|15791399|ref|NC_002163.1|	EMBL	CDS	766427	766597	.	+	0	ID=cds-CAL34944.1;Parent=gene-Cj0816;Dbxref=EnsemblGenomes-Gn:Cj0816,EnsemblGenomes-Tr:CAL34944,UniProtKB/TrEMBL:Q0PA74,NCBI_GP:CAL34944.1;Name=CAL34944.1;Note=Original (2000) note: Cj0816%2C unknown%2C len: 56 aa%3B no Hp match. Almost identical to the C-terminus of Cj0794%3B similarity continues from Cj0814 and Cj0815: may represent a pseudogene fragment. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0816;product=hypothetical protein Cj0816;protein_id=CAL34944.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	766692	767462	.	+	.	ID=gene-Cj0817;Name=glnH;gbkey=Gene;gene=glnH;gene_biotype=protein_coding;locus_tag=Cj0817
gi|15791399|ref|NC_002163.1|	EMBL	CDS	766692	767462	.	+	0	ID=cds-CAL34945.1;Parent=gene-Cj0817;Dbxref=EnsemblGenomes-Gn:Cj0817,EnsemblGenomes-Tr:CAL34945,GOA:Q0PA73,InterPro:IPR001638,UniProtKB/TrEMBL:Q0PA73,NCBI_GP:CAL34945.1;Name=CAL34945.1;Note=Original (2000) note: Cj0817%2C glnH%2C probable glutamine-binding periplasmic protein%2C len: 256 aa%3B similar to e.g. GLNH_ECOLI glutamine-binding periplasmic protein precursor (248 aa)%2C fasta scores%3B opt: 382 z-score: 441.9 E(): 2.6e-17%2C 32.5%25 identity in 243 aa overlap. 29.0%25 identity to HP0940. Contains Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%3B~Updated (2006) note: Characterised with marginal identity scores in more than one bacteria. Prosite domain PS50121%2C Solute binding protein/glutamate receptor domain identified within CDS. Further support given to product function. Putative added to product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:3027504%2C PMID:9571045%2C PMID:9142743;gbkey=CDS;gene=glnH;inference=protein motif:Prosite:PS50121;locus_tag=Cj0817;product=putative glutamine binding periplasmic protein;protein_id=CAL34945.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	766752	767417	.	+	.	ID=id-Cj0817;Note=HMMPfam hit to PF00497%2C Bacterial extracellular solute-binding prot%2C score 1.3e-79;gbkey=misc_feature;gene=glnH;inference=protein motif:Pfam:PF00497;locus_tag=Cj0817
gi|15791399|ref|NC_002163.1|	EMBL	gene	767555	767782	.	+	.	ID=gene-Cj0818;Name=Cj0818;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0818
gi|15791399|ref|NC_002163.1|	EMBL	CDS	767555	767782	.	+	0	ID=cds-CAL34946.1;Parent=gene-Cj0818;Dbxref=EnsemblGenomes-Gn:Cj0818,EnsemblGenomes-Tr:CAL34946,UniProtKB/TrEMBL:Q0PA72,NCBI_GP:CAL34946.1;Name=CAL34946.1;Note=Original (2000) note: Cj0818%2C probable lipoprotein%2Clen: 75 aa%3B no Hp match. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0818;product=putative lipoprotein;protein_id=CAL34946.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	767564	767617	.	+	.	ID=id-Cj0818;Note=1 probable transmembrane helix predicted for Cj0818 by TMHMM2.0 at aa 4-21;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0818
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	767567	767599	.	+	.	ID=id-Cj0818-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0818
gi|15791399|ref|NC_002163.1|	EMBL	gene	767808	768032	.	+	.	ID=gene-Cj0819;Name=Cj0819;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0819
gi|15791399|ref|NC_002163.1|	EMBL	CDS	767808	768032	.	+	0	ID=cds-CAL34947.1;Parent=gene-Cj0819;Dbxref=EnsemblGenomes-Gn:Cj0819,EnsemblGenomes-Tr:CAL34947,UniProtKB/TrEMBL:Q0PA71,NCBI_GP:CAL34947.1;Name=CAL34947.1;Note=Original (2000) note: Cj0819%2C small hydrophobic protein%2C len 74 aa%3B no Hp match%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Functional classification -Unknown;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0819;product=small hydrophobic protein;protein_id=CAL34947.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	767874	767933	.	+	.	ID=id-Cj0819;Note=2 probable transmembrane helices predicted for Cj0819 by TMHMM2.0 at aa 23-42 and 47-69;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0819;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	767946	768014	.	+	.	ID=id-Cj0819;Note=2 probable transmembrane helices predicted for Cj0819 by TMHMM2.0 at aa 23-42 and 47-69;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0819;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	768029	768763	.	-	.	ID=gene-Cj0820c;Name=fliP;gbkey=Gene;gene=fliP;gene_biotype=protein_coding;locus_tag=Cj0820c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	768029	768763	.	-	0	ID=cds-CAL34948.1;Parent=gene-Cj0820c;Dbxref=EnsemblGenomes-Gn:Cj0820c,EnsemblGenomes-Tr:CAL34948,GOA:Q0PA70,InterPro:IPR005837,InterPro:IPR005838,UniProtKB/TrEMBL:Q0PA70,NCBI_GP:CAL34948.1;Name=CAL34948.1;Note=Updated (2006) note: PMID:7601828%2C PMID:14617189%3B~Original (2000) note: Cj0820c%2C fliP%2C probable flagellar biosynthesis protein%2C len: 244 aa%3B simlar to e.g. FLIP_ECOLI flagellar biosynthetic protein FLIP (245 aa)%2C fasta scores%3B opt: 770 z-score: 921.7 E(): 0%2C 48.1%25 identity in 241 aa overlap. Similar to two consecutive Hp ORF's%2C probably representing a frameshift: HP0684 (105 aa%2C56.1%25 identity) and HP0685 (172 aa%2C 76.3%25 identity). Contains PS01060 Flagella transport protein fliP family signature 1%3B~Updated (2006) note: Pfam domain PF00813 FliP family identified within CDS. Prosite domain PS01061 Flagella transport protein fliP family signature 2%2C Type III secretion system inner membrane P protein also identified within CDS. Also%2C Five probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised in Caulobacter crescentus and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Surface structures;gbkey=CDS;gene=fliP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0820c;product=flagellar biosynthesis protein;protein_id=CAL34948.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	768059	768118	.	-	.	ID=id-Cj0820c;Note=5 probable transmembrane helices predicted for Cj0820c by TMHMM2.0 at aa 4-26%2C 39-61%2C 76-98%2C 184-206 and 216-235;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0820c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	768146	768214	.	-	.	ID=id-Cj0820c;Note=5 probable transmembrane helices predicted for Cj0820c by TMHMM2.0 at aa 4-26%2C 39-61%2C 76-98%2C 184-206 and 216-235;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0820c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	768470	768538	.	-	.	ID=id-Cj0820c;Note=5 probable transmembrane helices predicted for Cj0820c by TMHMM2.0 at aa 4-26%2C 39-61%2C 76-98%2C 184-206 and 216-235;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0820c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	768581	768649	.	-	.	ID=id-Cj0820c;Note=5 probable transmembrane helices predicted for Cj0820c by TMHMM2.0 at aa 4-26%2C 39-61%2C 76-98%2C 184-206 and 216-235;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0820c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	768686	768754	.	-	.	ID=id-Cj0820c;Note=5 probable transmembrane helices predicted for Cj0820c by TMHMM2.0 at aa 4-26%2C 39-61%2C 76-98%2C 184-206 and 216-235;gbkey=misc_feature;gene=fliP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0820c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	768047	768628	.	-	.	ID=id-Cj0820c-2;Note=HMMPfam hit to PF00813%2C FliP family%2C score 1.4e-113;gbkey=misc_feature;gene=fliP;inference=protein motif:Pfam:PF00813;locus_tag=Cj0820c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	768071	768109	.	-	.	ID=id-Cj0820c-3;Note=PS01061 Flagella transport protein fliP family signature 2;gbkey=misc_feature;gene=fliP;inference=protein motif:Prosite:PS01061;locus_tag=Cj0820c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	768206	768253	.	-	.	ID=id-Cj0820c-4;Note=PS01060 Flagella transport protein fliP family signature 1;gbkey=misc_feature;gene=fliP;inference=protein motif:Prosite:PS01060;locus_tag=Cj0820c
gi|15791399|ref|NC_002163.1|	EMBL	gene	768906	770195	.	+	.	ID=gene-Cj0821;Name=glmU;gbkey=Gene;gene=glmU;gene_biotype=protein_coding;locus_tag=Cj0821
gi|15791399|ref|NC_002163.1|	EMBL	CDS	768906	770195	.	+	0	ID=cds-CAL34949.1;Parent=gene-Cj0821;Dbxref=EnsemblGenomes-Gn:Cj0821,EnsemblGenomes-Tr:CAL34949,GOA:Q9PPA2,InterPro:IPR001451,InterPro:IPR005882,InterPro:IPR011004,InterPro:IPR025877,InterPro:IPR029044,NCBI_GP:CAL34949.1;Name=CAL34949.1;Note=Original (2000) note: Cj0821%2C glmU%2C probable UDP-N-acetylglucosamine pyrophosphorylase%2C len: 429 aa%3B similar to e.g. GLMU_ECOLI UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) (456 aa)%2C fasta scores%3B opt: 437 z-score: 494.9 E(): 2.9e-20%2C 37.4%25 identity in 455 aa overlap. 47.1%25 identity to HP0683. Contains Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase%2C and 2x Pfam match to entry PF00132 hexapep%2CBacterial transferase hexapeptide (four repeats)%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Central intermediary metabolism - Sugar nucleotides%3B~PMID:11329257%2C PMID:11173485;gbkey=CDS;gene=glmU;inference=protein motif:Pfam:PF00483;locus_tag=Cj0821;product=UDP-N-acetylglucosamine pyrophosphorylase;protein_id=CAL34949.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	768921	769586	.	+	.	ID=id-Cj0821;Note=HMMPfam hit to PF00483%2C Nucleotidyl transferase%2Cscore 1.9e-06;gbkey=misc_feature;gene=glmU;inference=protein motif:Pfam:PF00483;locus_tag=Cj0821
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	769662	769715	.	+	.	ID=id-Cj0821-2;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (th%2C score 15;gbkey=misc_feature;gene=glmU;inference=protein motif:Pfam:PF00132;locus_tag=Cj0821
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	769929	769982	.	+	.	ID=id-Cj0821-3;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (th%2C score 45;gbkey=misc_feature;gene=glmU;inference=protein motif:Pfam:PF00132;locus_tag=Cj0821
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	770004	770057	.	+	.	ID=id-Cj0821-4;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (th%2C score 15;gbkey=misc_feature;gene=glmU;inference=protein motif:Pfam:PF00132;locus_tag=Cj0821
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	770058	770111	.	+	.	ID=id-Cj0821-5;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (th%2C score 58;gbkey=misc_feature;gene=glmU;inference=protein motif:Pfam:PF00132;locus_tag=Cj0821
gi|15791399|ref|NC_002163.1|	EMBL	gene	770192	771346	.	+	.	ID=gene-Cj0822;Name=dfp;gbkey=Gene;gene=dfp;gene_biotype=protein_coding;locus_tag=Cj0822
gi|15791399|ref|NC_002163.1|	EMBL	CDS	770192	771346	.	+	0	ID=cds-CAL34950.1;Parent=gene-Cj0822;Dbxref=EnsemblGenomes-Gn:Cj0822,EnsemblGenomes-Tr:CAL34950,GOA:Q0PA68,InterPro:IPR003382,InterPro:IPR005252,InterPro:IPR007085,UniProtKB/TrEMBL:Q0PA68,NCBI_GP:CAL34950.1;Name=CAL34950.1;Note=Original (2000) note: Cj0822%2C dfp%2C DNA/pantothenate metabolism flavoprotein%2C len: 384 aa%3B similar to e.g. DFP_ECOLI DNA/pantothenate metabolism flavoprotein (430 aa)%2C fasta scores%3B opt: 451 z-score: 524.7 E(): 6.3e-22%2C29.4%25 identity in 385 aa overlap. 38.6%25 identity to HP0841%3B~Updated (2006) note: Pfam domains PF02441 Flavoprotein and PF04127 DNA/pantothenate metabolism flavoprotein were identified within CDS. Further support given to product function. Literature search and similarity search results have identified that part of the Dfp protein catalyzes the next step in CoA biosynthesis. Characterisation in Escherichia coli has shown that Dfp has phosphopantothenoylcysteine decarboxylase activity and uses CTP rather than ATP as the activating nucleoside 5'-triphosphate. Product function and gene name modified based on this information. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Pantothenate%3B~PMID:11278255;gbkey=CDS;gene=dfp;inference=protein motif:Pfam:PF04127;locus_tag=Cj0822;product=phosphopantothenoylcysteine decarboxylase;protein_id=CAL34950.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	770195	770542	.	+	.	ID=id-Cj0822;Note=HMMPfam hit to PF02441%2C Flavoprotein%2C score 1.3e-25;gbkey=misc_feature;gene=dfp;inference=protein motif:Pfam:PF02441;locus_tag=Cj0822
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	770735	771307	.	+	.	ID=id-Cj0822-2;Note=HMMPfam hit to PF04127%2C DNA / pantothenate metabolism flavoprote%2C score 1.2e-16;gbkey=misc_feature;gene=dfp;inference=protein motif:Pfam:PF04127;locus_tag=Cj0822
gi|15791399|ref|NC_002163.1|	EMBL	gene	771343	771960	.	+	.	ID=gene-Cj0823;Name=Cj0823;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0823
gi|15791399|ref|NC_002163.1|	EMBL	CDS	771343	771960	.	+	0	ID=cds-CAL34951.1;Parent=gene-Cj0823;Dbxref=EnsemblGenomes-Gn:Cj0823,EnsemblGenomes-Tr:CAL34951,UniProtKB/TrEMBL:Q0PA67,NCBI_GP:CAL34951.1;Name=CAL34951.1;Note=Original (2000) note: Cj0823%2C unknown%2C len: 205 aa%3B 24.3%25 identity to HP0842%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Functional classification -Unknown;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0823;product=hypothetical protein Cj0823;protein_id=CAL34951.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	771775	771843	.	+	.	ID=id-Cj0823;Note=1 probable transmembrane helix predicted for Cj0823 by TMHMM2.0 at aa 145-167;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0823
gi|15791399|ref|NC_002163.1|	EMBL	gene	771964	772632	.	+	.	ID=gene-Cj0824;Name=uppS;gbkey=Gene;gene=uppS;gene_biotype=protein_coding;locus_tag=Cj0824
gi|15791399|ref|NC_002163.1|	EMBL	CDS	771964	772632	.	+	0	ID=cds-CAL34952.1;Parent=gene-Cj0824;Dbxref=EnsemblGenomes-Gn:Cj0824,EnsemblGenomes-Tr:CAL34952,GOA:Q9PP99,InterPro:IPR001441,InterPro:IPR018520,PDB:3UGS,NCBI_GP:CAL34952.1;Name=CAL34952.1;Note=Original (2000) note: Cj0824%2C uppS%2C probable undecaprenyl diphosphate synthase%2C len: 222 aa%3B similar to TR:O82827 (EMBL:AB004319) Micrococcus luteus undecaprenyl diphosphate synthase (249 aa)%2C fasta scores%3B opt: 365 z-score: 445.7 E(): 1.6e-17%2C 35.2%25 identity in 227 aa overlap%2C and to other members of the UPF0015 family e.g. YAES_ECOLI (252 aa)%2C fasta scores%3B opt: 371 z-score: 452.7 E(): 6.4e-18%2C 37.2%25 identity in 226 aa overlap. 42.6%25 identity to HP1221. Contains Pfam match to entry PF01255 UPF0015%3B~Updated (2006) note: Previous Pfam domain has now been given a classification as PF01255 Putative undecaprenyl diphosphate synthase. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. UPPS (undecaprenyl pyrophosphate synthase) catalyses consecutive condensation reactions of FPP (farnesyl pyrophosphate) with eight isopentenyl pyrophosphates to generate C55 UPP%2C which serves as a lipid carrier for bacterial peptidoglycan biosynthesis. Putative removed from product function. Functional classification - Synthesis and modification of macromolecules - Phospholipids%3B~PMID:9882662%2C PMID:12756244%2C PMID:15447632;gbkey=CDS;gene=uppS;inference=protein motif:Pfam:PF01255;locus_tag=Cj0824;product=undecaprenyl diphosphate synthase;protein_id=CAL34952.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	771991	772629	.	+	.	ID=id-Cj0824;Note=HMMPfam hit to PF01255%2C Putative undecaprenyl diphosphate syntha%2C score 2.6e-72;gbkey=misc_feature;gene=uppS;inference=protein motif:Pfam:PF01255;locus_tag=Cj0824
gi|15791399|ref|NC_002163.1|	EMBL	gene	772629	773405	.	+	.	ID=gene-Cj0825;Name=Cj0825;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0825
gi|15791399|ref|NC_002163.1|	EMBL	CDS	772629	773405	.	+	0	ID=cds-CAL34953.1;Parent=gene-Cj0825;Dbxref=EnsemblGenomes-Gn:Cj0825,EnsemblGenomes-Tr:CAL34953,GOA:Q0PA65,InterPro:IPR000045,InterPro:IPR010627,UniProtKB/TrEMBL:Q0PA65,NCBI_GP:CAL34953.1;Name=CAL34953.1;Note=Original (2000) note: Cj0825%2C possible processing peptidase%2C len: 258 aa%3B similar to e.g. LEP3_VIBCH type 4 prepilin-like protein specific leader peptidase (253 aa)%2Cfasta scores%3B opt: 261 z-score: 323.9 E(): 9.7e-11%2C 28.5%25 identity in 260 aa overlap. No Hp match. Contains several probable membrane spanning domains%3B~Updated (2006) note: Pfam domains PF06750 Bacterial Peptidase A24 N-terminal domain and PF01478 Type IV leader peptidase family were identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Literature search identified literature giving further clues to product function. Functional classification - Protein translation and modification%3B~PMID:12949093%2C PMID:2553669;gbkey=CDS;inference=protein motif:Pfam:PF06750;locus_tag=Cj0825;product=putative processing peptidase;protein_id=CAL34953.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	772629	772661	.	+	.	ID=id-Cj0825;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0825
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	772641	772700	.	+	.	ID=id-Cj0825-2;Note=7 probable transmembrane helices predicted for Cj0825 by TMHMM2.0 at aa 5-24%2C 67-89%2C 93-112%2C 119-136%2C151-173%2C 203-225 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0825;part=1/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	772827	772895	.	+	.	ID=id-Cj0825-2;Note=7 probable transmembrane helices predicted for Cj0825 by TMHMM2.0 at aa 5-24%2C 67-89%2C 93-112%2C 119-136%2C151-173%2C 203-225 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0825;part=2/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	772905	772964	.	+	.	ID=id-Cj0825-2;Note=7 probable transmembrane helices predicted for Cj0825 by TMHMM2.0 at aa 5-24%2C 67-89%2C 93-112%2C 119-136%2C151-173%2C 203-225 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0825;part=3/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	772983	773036	.	+	.	ID=id-Cj0825-2;Note=7 probable transmembrane helices predicted for Cj0825 by TMHMM2.0 at aa 5-24%2C 67-89%2C 93-112%2C 119-136%2C151-173%2C 203-225 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0825;part=4/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	773079	773147	.	+	.	ID=id-Cj0825-2;Note=7 probable transmembrane helices predicted for Cj0825 by TMHMM2.0 at aa 5-24%2C 67-89%2C 93-112%2C 119-136%2C151-173%2C 203-225 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0825;part=5/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	773235	773303	.	+	.	ID=id-Cj0825-2;Note=7 probable transmembrane helices predicted for Cj0825 by TMHMM2.0 at aa 5-24%2C 67-89%2C 93-112%2C 119-136%2C151-173%2C 203-225 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0825;part=6/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	773331	773399	.	+	.	ID=id-Cj0825-2;Note=7 probable transmembrane helices predicted for Cj0825 by TMHMM2.0 at aa 5-24%2C 67-89%2C 93-112%2C 119-136%2C151-173%2C 203-225 and 235-257;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0825;part=7/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	772647	772904	.	+	.	ID=id-Cj0825-3;Note=HMMPfam hit to PF06750%2C Bacterial Peptidase A24 N-terminal doma%2C score 1.1e-39;gbkey=misc_feature;inference=protein motif:Pfam:PF06750;locus_tag=Cj0825
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	772926	773300	.	+	.	ID=id-Cj0825-4;Note=HMMPfam hit to PF01478%2C Type IV leader peptidase family%2C score 2.3e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF01478;locus_tag=Cj0825
gi|15791399|ref|NC_002163.1|	EMBL	gene	773405	774430	.	+	.	ID=gene-Cj0826;Name=Cj0826;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0826
gi|15791399|ref|NC_002163.1|	EMBL	CDS	773405	774430	.	+	0	ID=cds-CAL34954.1;Parent=gene-Cj0826;Dbxref=EnsemblGenomes-Gn:Cj0826,EnsemblGenomes-Tr:CAL34954,GOA:Q0PA64,InterPro:IPR005495,UniProtKB/TrEMBL:Q0PA64,NCBI_GP:CAL34954.1;Name=CAL34954.1;Note=Original (2000) note: Cj0826%2C probable integral membrane protein%2C len: 341 aa%3B similar to hypothetical membrane proteins e.g. YJGP_HAEIN (372 aa)%2C fasta scores%3B opt: 203 z-score: 236.9 E(): 6.8e-06%2C 21.7%25 identity in 314 aa overlap. 32.3%25 identity to HP0362%3B~Updated (2006) note: Pfam domain PF03739 Predicted permease YjgP/YjgQ family identified within CDS. Members of this family are predicted integral membrane proteins of unknown function. Also%2C six probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0826;product=putative integral membrane protein;protein_id=CAL34954.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	773420	774421	.	+	.	ID=id-Cj0826;Note=HMMPfam hit to PF03739%2C Predicted permease YjgP/YjgQ family%2C score 1.5e-77;gbkey=misc_feature;inference=protein motif:Pfam:PF03739;locus_tag=Cj0826
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	773441	773509	.	+	.	ID=id-Cj0826-2;Note=6 probable transmembrane helices predicted for Cj0826 by TMHMM2.0 at aa 13-35%2C 55-77%2C 106-128%2C 261-283%2C290-307 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0826;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	773567	773635	.	+	.	ID=id-Cj0826-2;Note=6 probable transmembrane helices predicted for Cj0826 by TMHMM2.0 at aa 13-35%2C 55-77%2C 106-128%2C 261-283%2C290-307 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0826;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	773720	773788	.	+	.	ID=id-Cj0826-2;Note=6 probable transmembrane helices predicted for Cj0826 by TMHMM2.0 at aa 13-35%2C 55-77%2C 106-128%2C 261-283%2C290-307 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0826;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	774185	774253	.	+	.	ID=id-Cj0826-2;Note=6 probable transmembrane helices predicted for Cj0826 by TMHMM2.0 at aa 13-35%2C 55-77%2C 106-128%2C 261-283%2C290-307 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0826;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	774272	774325	.	+	.	ID=id-Cj0826-2;Note=6 probable transmembrane helices predicted for Cj0826 by TMHMM2.0 at aa 13-35%2C 55-77%2C 106-128%2C 261-283%2C290-307 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0826;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	774335	774403	.	+	.	ID=id-Cj0826-2;Note=6 probable transmembrane helices predicted for Cj0826 by TMHMM2.0 at aa 13-35%2C 55-77%2C 106-128%2C 261-283%2C290-307 and 311-333;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0826;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	774427	775152	.	+	.	ID=gene-Cj0827;Name=truA;gbkey=Gene;gene=truA;gene_biotype=protein_coding;locus_tag=Cj0827
gi|15791399|ref|NC_002163.1|	EMBL	CDS	774427	775152	.	+	0	ID=cds-CAL34955.1;Parent=gene-Cj0827;Dbxref=EnsemblGenomes-Gn:Cj0827,EnsemblGenomes-Tr:CAL34955,GOA:Q9PP96,InterPro:IPR001406,InterPro:IPR020094,InterPro:IPR020095,InterPro:IPR020097,InterPro:IPR020103,NCBI_GP:CAL34955.1;Name=CAL34955.1;Note=Original (2000) note: Cj0827%2C truA%2C probable tRNA pseudouridine synthase%2C len: 241 aa%3B simimlar to e.g. TRUA_BACSU tRNA pseudouridine synthase A (EC 4.2.1.70) (247 aa)%2C fasta scores%3B opt: 330 z-score: 409.6 E(): 1.6e-15%2C 29.7%25 identity in 246 aa overlap. 37.4%25 identity to HP0361%3B~Updated (2006) note: Pfam domains x2 PF01416 tRNA pseudouridine synthase identified within CDS. Further support given to product function. Characterised within Escherichia coli and Bacillus with marginal identity scores. Appropriate motifs present. Putative removed from product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:10625422%2C PMID:10588695%2C PMID:14993303;gbkey=CDS;gene=truA;inference=protein motif:Pfam:PF01416;locus_tag=Cj0827;product=tRNA pseudouridine synthase;protein_id=CAL34955.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	774442	774738	.	+	.	ID=id-Cj0827;Note=HMMPfam hit to PF01416%2C tRNA pseudouridine synthase%2C score 1.1e-21;gbkey=misc_feature;gene=truA;inference=protein motif:Pfam:PF01416;locus_tag=Cj0827
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	774847	775149	.	+	.	ID=id-Cj0827-2;Note=HMMPfam hit to PF01416%2C tRNA pseudouridine synthase%2C score 2.4e-12;gbkey=misc_feature;gene=truA;inference=protein motif:Pfam:PF01416;locus_tag=Cj0827
gi|15791399|ref|NC_002163.1|	EMBL	gene	775149	776360	.	-	.	ID=gene-Cj0828c;Name=ilvA;gbkey=Gene;gene=ilvA;gene_biotype=protein_coding;locus_tag=Cj0828c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	775149	776360	.	-	0	ID=cds-CAL34956.1;Parent=gene-Cj0828c;Dbxref=EnsemblGenomes-Gn:Cj0828c,EnsemblGenomes-Tr:CAL34956,GOA:Q0PA62,InterPro:IPR000634,InterPro:IPR001926,InterPro:IPR002912,InterPro:IPR005789,UniProtKB/TrEMBL:Q0PA62,NCBI_GP:CAL34956.1;Name=CAL34956.1;Note=Original (2000) note: Cj0828c%2C ilvA%2C probable threonine dehydratase biosynthetic%2C len: 403 aa%3B similar to e.g. THD1_BACSU threonine dehydratase biosynthetic (EC 4.2.1.16) (422 aa)%2C fasta scores%3B opt: 808 z-score: 906.6 E(): 0%2C 35.6%25 identity in 407 aa overlap. No Hp match. Contains PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site%2C and Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependant enzymes%3B~Updated (2006) note: Characterised in Caulobacter crescentus and Bacillus subtilis with acceptable identity scores. Putative not added to product function. Functional classification - Amino acid biosynthesis - Branched chain family%3B~PMID:1991719%2C PMID:14688104;gbkey=CDS;gene=ilvA;inference=protein motif:Prosite:PS00165;locus_tag=Cj0828c;product=threonine dehydratase biosynthetic;protein_id=CAL34956.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	775446	776321	.	-	.	ID=id-Cj0828c;Note=HMMPfam hit to PF00291%2C Pyridoxal-phosphate dependent enzyme%2C score 1e-81;gbkey=misc_feature;gene=ilvA;inference=protein motif:Pfam:PF00291;locus_tag=Cj0828c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	776196	776237	.	-	.	ID=id-Cj0828c-2;Note=PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=ilvA;inference=protein motif:Prosite:PS00165;locus_tag=Cj0828c
gi|15791399|ref|NC_002163.1|	EMBL	gene	776360	776773	.	-	.	ID=gene-Cj0829c;Name=Cj0829c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0829c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	776360	776773	.	-	0	ID=cds-CAL34957.1;Parent=gene-Cj0829c;Dbxref=EnsemblGenomes-Gn:Cj0829c,EnsemblGenomes-Tr:CAL34957,GOA:Q0PA61,InterPro:IPR003781,InterPro:IPR016040,UniProtKB/TrEMBL:Q0PA61,NCBI_GP:CAL34957.1;Name=CAL34957.1;Note=Original (2000) note: Cj0829c%2C unknown%2C len: 137 aa%3B similar to hypothetical proteins e.g. TR:P75874 (EMBL:AE000198) E. coli b0965 (164 aa)%2C fasta scores%3B opt: 240 z-score: 312.1 E(): 4.4e-10%2C 30.3%25 identity in 132 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02629 CoA binding domain identified within CDS. Product modified to new family member based on motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF02629;locus_tag=Cj0829c;product=putative CoA binding domain containing protein;protein_id=CAL34957.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	776429	776743	.	-	.	ID=id-Cj0829c;Note=HMMPfam hit to PF02629%2C CoA binding domain%2C score 0.00014;gbkey=misc_feature;inference=protein motif:Pfam:PF02629;locus_tag=Cj0829c
gi|15791399|ref|NC_002163.1|	EMBL	gene	776892	777308	.	+	.	ID=gene-Cj0830;Name=Cj0830;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0830
gi|15791399|ref|NC_002163.1|	EMBL	CDS	776892	777308	.	+	0	ID=cds-CAL34958.1;Parent=gene-Cj0830;Dbxref=EnsemblGenomes-Gn:Cj0830,EnsemblGenomes-Tr:CAL34958,InterPro:IPR007418,UniProtKB/TrEMBL:Q0PA60,NCBI_GP:CAL34958.1;Name=CAL34958.1;Note=Original (2000) note: Cj0830%2C probable integral membrane protein%2C len: 138 aa%3B 42.7%25 identity to HP1502%3B~Updated (2006) note: Pfam domain PF04323 Protein of unknown function (DUF474) identified within CDS. Also%2Cfour probable transmembrane helices predicted by TMHMM2.0. Literature search identified paper giving potential clues to product function. Functional classification -Membranes%2C lipoproteins and porins%3B~PMID:16045618;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0830;product=putative integral membrane protein;protein_id=CAL34958.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	776919	776987	.	+	.	ID=id-Cj0830;Note=4 probable transmembrane helices predicted for Cj0830 by TMHMM2.0 at aa 10-32%2C 45-67%2C 77-99 and 112-134;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0830;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	777024	777092	.	+	.	ID=id-Cj0830;Note=4 probable transmembrane helices predicted for Cj0830 by TMHMM2.0 at aa 10-32%2C 45-67%2C 77-99 and 112-134;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0830;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	777120	777188	.	+	.	ID=id-Cj0830;Note=4 probable transmembrane helices predicted for Cj0830 by TMHMM2.0 at aa 10-32%2C 45-67%2C 77-99 and 112-134;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0830;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	777225	777293	.	+	.	ID=id-Cj0830;Note=4 probable transmembrane helices predicted for Cj0830 by TMHMM2.0 at aa 10-32%2C 45-67%2C 77-99 and 112-134;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0830;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	777006	777290	.	+	.	ID=id-Cj0830-2;Note=HMMPfam hit to PF04323%2C Protein of unknown function (DUF474)%2C score 2.5e-45;gbkey=misc_feature;inference=protein motif:Pfam:PF04323;locus_tag=Cj0830
gi|15791399|ref|NC_002163.1|	EMBL	gene	777295	778368	.	-	.	ID=gene-Cj0831c;Name=trmA;gbkey=Gene;gene=trmA;gene_biotype=protein_coding;locus_tag=Cj0831c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	777295	778368	.	-	0	ID=cds-CAL34959.1;Parent=gene-Cj0831c;Dbxref=EnsemblGenomes-Gn:Cj0831c,EnsemblGenomes-Tr:CAL34959,GOA:Q9PP92,InterPro:IPR010280,InterPro:IPR011869,InterPro:IPR029063,NCBI_GP:CAL34959.1;Name=CAL34959.1;Note=Original (2000) note: Cj0831c%2C trmA%2C probable tRNA (uracil-5-)-methyltransferase%2C len: 357 aa%3B similar to e.g. TRMA_ECOLI tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35) (366 aa)%2C fasta scores%3B opt: 791 z-score: 952.0 E(): 0%2C 37.0%25 identity in 351 aa overlap. No Hp match. Contains PS01230 RNA methyltransferase trmA family signature 1%3B~Updated (2006) note: Pfam domain PF05958 tRNA (Uracil-5-)-methyltransferase identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:2999071;gbkey=CDS;gene=trmA;inference=protein motif:Prosite:PS01230;locus_tag=Cj0831c;product=tRNA (uracil-5-)-methyltransferase;protein_id=CAL34959.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	777298	778350	.	-	.	ID=id-Cj0831c;Note=HMMPfam hit to PF05958%2C tRNA (Uracil-5-)-methyltransferase%2C score 2.6e-240;gbkey=misc_feature;gene=trmA;inference=protein motif:Pfam:PF05958;locus_tag=Cj0831c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	777412	777501	.	-	.	ID=id-Cj0831c-2;Note=PS01230 RNA methyltransferase trmA family signature 1;gbkey=misc_feature;gene=trmA;inference=protein motif:Prosite:PS01230;locus_tag=Cj0831c
gi|15791399|ref|NC_002163.1|	EMBL	gene	778365	780098	.	-	.	ID=gene-Cj0832c;Name=Cj0832c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0832c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	778365	780098	.	-	0	ID=cds-CAL34960.1;Parent=gene-Cj0832c;Dbxref=EnsemblGenomes-Gn:Cj0832c,EnsemblGenomes-Tr:CAL34960,GOA:Q0PA58,InterPro:IPR018461,UniProtKB/TrEMBL:Q0PA58,NCBI_GP:CAL34960.1;Name=CAL34960.1;Note=Original (2000) note: Cj0832c%2C probable integral membrane protein%2C len: 577 aa%3B similar to hypothetical proteins e.g. TR:O59530 (EMBL:AP000007) Pyrococcus horikoshii PH1889 (533 aa)%2C fasta scores%3B opt: 628 z-score: 744.4 E(): 0%2C 39.2%25 identity in 558 aa overlap. 26.9%25 identity to HP0946%3B~Updated (2006) note: Pfam domain PF03553 Na+/H+ antiporter family identified within CDS. Also%2C thirteen probable transmembrane helices predicted by TMHMM2. Product modified to more specific family member based on motif match. No specific characterisation carried out yet%2Cso putative kept within product function. Functional classification - Transport/binding proteins - Cations;gbkey=CDS;inference=protein motif:Pfam:PF03553;locus_tag=Cj0832c;product=putative Na+/H+ antiporter family protein;protein_id=CAL34960.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	778380	778448	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=1/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	778458	778511	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=2/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	778731	778799	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=3/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	778863	778931	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=4/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	778968	779027	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=5/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	779115	779183	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=6/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	779322	779375	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=7/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	779388	779441	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=8/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	779475	779543	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=9/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	779586	779654	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=10/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	779715	779783	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=11/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	779886	779954	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=12/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	779967	780035	.	-	.	ID=id-Cj0832c;Note=13 probable transmembrane helices predicted for Cj0832c by TMHMM2.0 at aa 22-44%2C 49-71%2C 106-128%2C 149-171%2C186-208%2C 220-237%2C 242-259%2C 306-328%2C 358-377%2C 390-412%2C434-456%2C 530-547 and 551-573;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0832c;part=13/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	778449	779513	.	-	.	ID=id-Cj0832c-2;Note=HMMPfam hit to PF03553%2C Na+/H+ antiporter family%2Cscore 5.2e-102;gbkey=misc_feature;inference=protein motif:Pfam:PF03553;locus_tag=Cj0832c
gi|15791399|ref|NC_002163.1|	EMBL	gene	780095	780844	.	-	.	ID=gene-Cj0833c;Name=Cj0833c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0833c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	780095	780844	.	-	0	ID=cds-CAL34961.1;Parent=gene-Cj0833c;Dbxref=EnsemblGenomes-Gn:Cj0833c,EnsemblGenomes-Tr:CAL34961,GOA:Q0PA57,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,InterPro:IPR020904,UniProtKB/TrEMBL:Q0PA57,NCBI_GP:CAL34961.1;Name=CAL34961.1;Note=Original (2000) note: Cj0833c%2C probable oxidoreductase%2C len: 249 aa%3B simlar to e.g. YDFG_ECOLI probable oxidoreductase (248 aa)%2C fasta scores%3B opt: 796 z-score: 943.5 E(): 0%2C 48.8%25 identity in 244 aa overlap. 47.3%25 identity to HP0357. Contains PS00061 Short-chain dehydrogenases/reductases family signature%2C and Pfam match to entry PF00106 adh_short%2C Alcohol/other dehydrogenases%2Cshort chain type%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative kept within product function. Functional classification -Misc%3B~PMID:12535615;gbkey=CDS;inference=protein motif:Prosite:PS00061;locus_tag=Cj0833c;product=putative oxidoreductase;protein_id=CAL34961.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	780113	780835	.	-	.	ID=id-Cj0833c;Note=HMMPfam hit to PF00106%2C short chain dehydrogenase%2Cscore 7.9e-49;gbkey=misc_feature;inference=protein motif:Pfam:PF00106;locus_tag=Cj0833c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	780356	780442	.	-	.	ID=id-Cj0833c-2;Note=PS00061 Short-chain dehydrogenases/reductases family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00061;locus_tag=Cj0833c
gi|15791399|ref|NC_002163.1|	EMBL	gene	780841	782079	.	-	.	ID=gene-Cj0834c;Name=Cj0834c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0834c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	780841	782079	.	-	0	ID=cds-CAL34962.1;Parent=gene-Cj0834c;Dbxref=EnsemblGenomes-Gn:Cj0834c,EnsemblGenomes-Tr:CAL34962,InterPro:IPR002110,InterPro:IPR020683,UniProtKB/TrEMBL:Q0PA56,NCBI_GP:CAL34962.1;Name=CAL34962.1;Note=Original (2000) note: Cj0834c%2C possible periplasmic protein%2C len: 412 aa%3B similar in C-terminus to ankyrin repeat-containing proteins e.g. ANKH_CHRVI ankyrin homolog precursor (323 aa)%2C fasta scores%3B opt: 194 z-score: 229.9 E(): 1.7e-05%2C 28.9%25 identity in 194 aa overlap. No Hp match. Some similarity to ankyrin repeats in Cj1386 (29.3%25 identity in 99 aa overlap). Contains 2x Pfam match to entry PF00023 ank%2C Ank repeat%2C and possible N-terminal signal sequence%3B~Updated (2006) note: No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Pfam:PF00023;locus_tag=Cj0834c;product=ankyrin repeat-containing putative periplasmic protein;protein_id=CAL34962.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	780961	781059	.	-	.	ID=id-Cj0834c;Note=HMMPfam hit to PF00023%2C Ankyrin repeat%2C score 1.8e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF00023;locus_tag=Cj0834c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	781141	781239	.	-	.	ID=id-Cj0834c-2;Note=HMMPfam hit to PF00023%2C Ankyrin repeat%2C score 1.9e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF00023;locus_tag=Cj0834c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	781240	781428	.	-	.	ID=id-Cj0834c-3;Note=HMMPfam hit to PF00023%2C Ankyrin repeat%2C score 7.2;gbkey=misc_feature;inference=protein motif:Pfam:PF00023;locus_tag=Cj0834c
gi|15791399|ref|NC_002163.1|	EMBL	gene	782129	784675	.	-	.	ID=gene-Cj0835c;Name=acnB;gbkey=Gene;gene=acnB;gene_biotype=protein_coding;locus_tag=Cj0835c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	782129	784675	.	-	0	ID=cds-CAL34963.1;Parent=gene-Cj0835c;Dbxref=EnsemblGenomes-Gn:Cj0835c,EnsemblGenomes-Tr:CAL34963,GOA:Q0PA55,InterPro:IPR001030,InterPro:IPR004406,InterPro:IPR015928,InterPro:IPR015929,InterPro:IPR015931,InterPro:IPR015932,InterPro:IPR015933,InterPro:IPR015937,InterPro:IPR018136,UniProtKB/TrEMBL:Q0PA55,NCBI_GP:CAL34963.1;Name=CAL34963.1;Note=Original (2000) note: Cj0835c%2C acnB%2C probable aconitate hydratase%2C len: 848 aa%3B highly similar to e.g. ACO2_ECOLI aconitate hydratase 2 (EC 4.2.1.3) (865 aa)%2Cfasta scores%3B opt: 2785 z-score: 3084.1 E(): 0%2C 60.5%25 identity in 858 aa overlap. 65.8%25 identity to HP0779. Contains PS00450 and PS01244 Aconitase family signatures 1 and 2%2C and Pfam match to entry PF00330 aconitase%3B~Updated (2006) note: Pfam domain PF06434 Aconitate hydratase identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Paper identified linking protein to glycoprotein. Functional classification - Energy metabolism - Tricarboxylic acid cycle%3B~PMID:12186869%2C PMID:10585860;gbkey=CDS;gene=acnB;inference=protein motif:Prosite:PS01244;locus_tag=Cj0835c;product=aconitate hydratase;protein_id=CAL34963.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	782252	783571	.	-	.	ID=id-Cj0835c;Note=HMMPfam hit to PF00330%2C Aconitase family (aconitate hydratase)%2C score 2.3e-09;gbkey=misc_feature;gene=acnB;inference=protein motif:Pfam:PF00330;locus_tag=Cj0835c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	782384	782425	.	-	.	ID=id-Cj0835c-2;Note=PS01244 Aconitase family signature 2;gbkey=misc_feature;gene=acnB;inference=protein motif:Prosite:PS01244;locus_tag=Cj0835c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	782546	782599	.	-	.	ID=id-Cj0835c-3;Note=PS00450 Aconitase family signature 1;gbkey=misc_feature;gene=acnB;inference=protein motif:Prosite:PS00450;locus_tag=Cj0835c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	783572	784666	.	-	.	ID=id-Cj0835c-4;Note=HMMPfam hit to PF06434%2C Aconitate hydratase%2C score 3.2e-259;gbkey=misc_feature;gene=acnB;inference=protein motif:Pfam:PF06434;locus_tag=Cj0835c
gi|15791399|ref|NC_002163.1|	EMBL	gene	784730	785182	.	+	.	ID=gene-Cj0836;Name=ogt;gbkey=Gene;gene=ogt;gene_biotype=protein_coding;locus_tag=Cj0836
gi|15791399|ref|NC_002163.1|	EMBL	CDS	784730	785182	.	+	0	ID=cds-CAL34964.1;Parent=gene-Cj0836;Dbxref=EnsemblGenomes-Gn:Cj0836,EnsemblGenomes-Tr:CAL34964,GOA:Q0PA54,InterPro:IPR001497,InterPro:IPR008332,InterPro:IPR011991,InterPro:IPR014048,InterPro:IPR023546,UniProtKB/TrEMBL:Q0PA54,NCBI_GP:CAL34964.1;Name=CAL34964.1;Note=Original (2000) note: Cj0836%2C ogt%2C probable methylated-DNA--protein-cysteine methyltransferase%2C len: 150 aa%3B similar to many e.g. OGT_ECOLI methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63) (171 aa)%2C fasta scores%3B opt: 274 z-score: 355.6 E(): 1.6e-12%2C 43.7%25 identity in 103 aa overlap%2C and DAT1_BACSU methylated-DNA--protein-cysteine methyltransferase (165 aa)%2C fasta scores%3B opt: 358 z-score: 460.7 E(): 2.3e-18%2C 44.5%25 identity in 137 aa overlap. 45.3%25 identity to HP0676. Contains PS00374 Methylated-DNA--protein-cysteine methyltransferase active site and Pfam match to entry PF01035 Methyltrans%2C6-O-methylguanine DNA methyltransferase%3B~Updated (2006) note: Characterised in Escherichia coli and Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:2506524;gbkey=CDS;gene=ogt;inference=protein motif:Prosite:PS00374;locus_tag=Cj0836;product=methylated-DNA--protein-cysteine methyltransferase;protein_id=CAL34964.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	784925	785179	.	+	.	ID=id-Cj0836;Note=HMMPfam hit to PF01035%2C 6-O-methylguanine DNA methyltransferas%2C score 1.1e-41;gbkey=misc_feature;gene=ogt;inference=protein motif:Pfam:PF01035;locus_tag=Cj0836
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	785078	785098	.	+	.	ID=id-Cj0836-2;Note=PS00374 Methylated-DNA--protein-cysteine methyltransferase active site;gbkey=misc_feature;gene=ogt;inference=protein motif:Prosite:PS00374;locus_tag=Cj0836
gi|15791399|ref|NC_002163.1|	EMBL	gene	785174	786115	.	-	.	ID=gene-Cj0837c;Name=Cj0837c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0837c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	785174	786115	.	-	0	ID=cds-CAL34965.1;Parent=gene-Cj0837c;Dbxref=EnsemblGenomes-Gn:Cj0837c,EnsemblGenomes-Tr:CAL34965,UniProtKB/TrEMBL:Q0PA53,NCBI_GP:CAL34965.1;Name=CAL34965.1;Note=Original (2000) note: Cj0837c%2C unknown%2C len: 313 aa%3B no Hp match. Contains PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1%2C and PS00030 Eukaryotic putative RNA-binding region RNP-1 signature. Functional classification - Unknown;gbkey=CDS;inference=protein motif:Prosite:PS00179;locus_tag=Cj0837c;product=conserved hypothetical protein Cj0837c;protein_id=CAL34965.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	785741	785764	.	-	.	ID=id-Cj0837c;Note=PS00030 Eukaryotic putative RNA-binding region RNP-1 signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00030;locus_tag=Cj0837c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	785837	785896	.	-	.	ID=id-Cj0837c-2;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00179;locus_tag=Cj0837c
gi|15791399|ref|NC_002163.1|	EMBL	gene	786119	788005	.	-	.	ID=gene-Cj0838c;Name=metS;gbkey=Gene;gene=metS;gene_biotype=protein_coding;locus_tag=Cj0838c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	786119	788005	.	-	0	ID=cds-CAL34966.1;Parent=gene-Cj0838c;Dbxref=EnsemblGenomes-Gn:Cj0838c,EnsemblGenomes-Tr:CAL34966,GOA:Q9PP85,InterPro:IPR002547,InterPro:IPR004495,InterPro:IPR009080,InterPro:IPR012340,InterPro:IPR014729,InterPro:IPR014758,InterPro:IPR015413,InterPro:IPR023457,NCBI_GP:CAL34966.1;Name=CAL34966.1;Note=Original (2000) note: Cj0838c%2C metS%2C probable methionyl-tRNA synthetase%2C len: 628 aa%3B similar to many e.g. SYM_BACST methionyl-tRNA synthetase (EC 6.1.1.10) (649 aa)%2C fasta scores%3B opt: 1502 z-score: 1694.5 E(): 0%2C43.7%25 identity in 647 aa overlap. 49.7%25 identity to HP0417. Contains Pfam match to entry PF00133 tRNA-synt_1%2CtRNA synthetases class I%3B~Updated (2006) note: Pfam domain PF01588 Putative tRNA binding domain identified within CDS. Further support given to product function. Characterised in Bacillus stearothermophilus with acceptable identity score. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:1852609;gbkey=CDS;gene=metS;inference=protein motif:Pfam:PF01588;locus_tag=Cj0838c;product=methionyl-tRNA synthetase;protein_id=CAL34966.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	786128	786409	.	-	.	ID=id-Cj0838c;Note=HMMPfam hit to PF01588%2C Putative tRNA binding domain%2C score 3.8e-30;gbkey=misc_feature;gene=metS;inference=protein motif:Pfam:PF01588;locus_tag=Cj0838c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	787004	788002	.	-	.	ID=id-Cj0838c-2;Note=HMMPfam hit to PF00133%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score 8.9e-08;gbkey=misc_feature;gene=metS;inference=protein motif:Pfam:PF00133;locus_tag=Cj0838c
gi|15791399|ref|NC_002163.1|	EMBL	gene	788015	788212	.	-	.	ID=gene-Cj0839c;Name=Cj0839c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0839c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	788015	788212	.	-	0	ID=cds-CAL34967.1;Parent=gene-Cj0839c;Dbxref=EnsemblGenomes-Gn:Cj0839c,EnsemblGenomes-Tr:CAL34967,UniProtKB/TrEMBL:Q0PA51,NCBI_GP:CAL34967.1;Name=CAL34967.1;Note=Original (2000) note: Cj0839c%2C unknown%2C len: 65 aa%3B 43.1%25 identity to HP1384. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0839c;product=hypothetical protein Cj0839c;protein_id=CAL34967.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	788205	789047	.	-	.	ID=gene-Cj0840c;Name=fbp;gbkey=Gene;gene=fbp;gene_biotype=protein_coding;locus_tag=Cj0840c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	788205	789047	.	-	0	ID=cds-CAL34968.1;Parent=gene-Cj0840c;Dbxref=EnsemblGenomes-Gn:Cj0840c,EnsemblGenomes-Tr:CAL34968,GOA:Q0PA50,InterPro:IPR000146,InterPro:IPR023079,InterPro:IPR028343,NCBI_GP:CAL34968.1;Name=CAL34968.1;Note=Original (2000) note: Cj0840c%2C fbp%2C probable fructose-1%2C6-bisphosphatase%2C len: 280 aa%3B similar to many e.g. F16Q_SACHY fructose-1%2C6-bisphosphatase%2C cytosolic (EC 3.1.3.11) (331 aa)%2C fasta scores%3B opt: 376 z-score: 455.9 E(): 4.3e-18%2C 37.5%25 identity in 272 aa overlap. 39.9%25 identity to HP1385. Contains 2x Pfam match to entry PF00316 FBPase%2C Fructose-1-6-bisphosphatase%3B~Updated (2006) note: Characterisation work carried out in Escherichia coli and Bacillus subtilis with marginal identity scores. Appropriate motifs present. Putative removed form product function. Functional classification - Central intermediary metabolism -Gluconeogenesis%3B~PMID:12053203%2C PMID:10913263%2C PMID:9696785;gbkey=CDS;gene=fbp;inference=protein motif:Pfam:PF00316;locus_tag=Cj0840c;product=fructose-1%2C6-bisphosphatase;protein_id=CAL34968.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	788208	789047	.	-	.	ID=id-Cj0840c;Note=HMMPfam hit to PF00316%2CFructose-1-6-bisphosphatase%2C score 1.1e-52;gbkey=misc_feature;gene=fbp;inference=protein motif:Pfam:PF00316;locus_tag=Cj0840c
gi|15791399|ref|NC_002163.1|	EMBL	gene	789049	789540	.	-	.	ID=gene-Cj0841c;Name=mobB;gbkey=Gene;gene=mobB;gene_biotype=protein_coding;locus_tag=Cj0841c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	789049	789540	.	-	0	ID=cds-CAL34969.1;Parent=gene-Cj0841c;Dbxref=EnsemblGenomes-Gn:Cj0841c,EnsemblGenomes-Tr:CAL34969,GOA:Q0PA49,InterPro:IPR004435,InterPro:IPR027417,InterPro:IPR029007,UniProtKB/TrEMBL:Q0PA49,NCBI_GP:CAL34969.1;Name=CAL34969.1;Note=Original (2000) note: Cj0841c%2C probable ATP/GTP binding protein%2C len: 163 aa%3B some similarity to e.g. MOBB_ECOLI molybdopterin-guanine dinucleotide biosynthesis protein B (174 aa)%2C fasta scores%3B opt: 148 z-score: 194.1 E(): 0.0016%2C 25.6%25 identity in 168 aa overlap. No Hp match. Contains S00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF03205 Molybdopterin guanine dinucleotide synthesis protein B identified within CDS. Further support for product function. Characterisation papers form Escherichia coli have been attached. This information and identification of appropriate motifs has led to product function being modified to a more specific family member. Putative kept within product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Molybdopterin%3B~PMID:12372836%2C PMID:9219527;gbkey=CDS;gene=mobB;inference=protein motif:Pfam:PF03205;locus_tag=Cj0841c;product=putative molybdopterin-guanine dinucleotide biosynthesis protein;protein_id=CAL34969.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	789148	789531	.	-	.	ID=id-Cj0841c;Note=HMMPfam hit to PF03205%2C Molybdopterin guanine dinucleotide synthesis%2C score 1.2e-21;gbkey=misc_feature;gene=mobB;inference=protein motif:Pfam:PF03205;locus_tag=Cj0841c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	789490	789513	.	-	.	ID=id-Cj0841c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=mobB;inference=protein motif:Prosite:PS00017;locus_tag=Cj0841c
gi|15791399|ref|NC_002163.1|	EMBL	gene	789636	790121	.	+	.	ID=gene-Cj0842;Name=Cj0842;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0842
gi|15791399|ref|NC_002163.1|	EMBL	CDS	789636	790121	.	+	0	ID=cds-CAL34970.1;Parent=gene-Cj0842;Dbxref=EnsemblGenomes-Gn:Cj0842,EnsemblGenomes-Tr:CAL34970,UniProtKB/TrEMBL:Q0PA48,NCBI_GP:CAL34970.1;Name=CAL34970.1;Note=Original (2000) note: Cj0842%2C probable lipoprotein%2Clen: 161 aa%3B no Hp match. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0842;product=putative lipoprotein;protein_id=CAL34970.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	789651	789683	.	+	.	ID=id-Cj0842;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0842
gi|15791399|ref|NC_002163.1|	EMBL	gene	790018	791643	.	-	.	ID=gene-Cj0843c;Name=Cj0843c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0843c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	790018	791643	.	-	0	ID=cds-CAL34971.1;Parent=gene-Cj0843c;Dbxref=EnsemblGenomes-Gn:Cj0843c,EnsemblGenomes-Tr:CAL34971,GOA:Q0PA47,InterPro:IPR000189,InterPro:IPR008258,InterPro:IPR023346,UniProtKB/TrEMBL:Q0PA47,NCBI_GP:CAL34971.1;Name=CAL34971.1;Note=Original (2000) note: Cj0843c%2C probable secreted transglycosylase%2C len: 541 aa%3B some simialarity in C-terminus to SLT_ECOLI soluble lytic murein transglycosylase precursor (645 aa)%2C fasta scores%3B opt: 257 z-score: 285.7 E(): 1.3e-08%2C 29.3%25 identity in 208 aa overlap. 31.4%25 identity to HP0645. Contains PS00922 Prokaryotic transglycosylases signature and N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF01464 Transglycosylase SLT domain identified within CDS. Further support given to product function. Putative kept within product function as identity scores were marginal and alignment was only partial. Paper identified linking product function to glycosylation. Functional classification - Degradation of macromolecules - Proteins%2Cpeptides and glycopeptides%3B~PMID:12186869;gbkey=CDS;inference=protein motif:Prosite:PS00922;locus_tag=Cj0843c;product=putative secreted transglycosylase;protein_id=CAL34971.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	790186	790545	.	-	.	ID=id-Cj0843c;Note=HMMPfam hit to PF01464%2C Transglycosylase SLT domain%2C score 1.1e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF01464;locus_tag=Cj0843c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	790402	790488	.	-	.	ID=id-Cj0843c-2;Note=PS00922 Prokaryotic transglycosylases signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00922;locus_tag=Cj0843c
gi|15791399|ref|NC_002163.1|	EMBL	gene	791640	791921	.	-	.	ID=gene-Cj0844c;Name=Cj0844c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0844c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	791640	791921	.	-	0	ID=cds-CAL34972.1;Parent=gene-Cj0844c;Dbxref=EnsemblGenomes-Gn:Cj0844c,EnsemblGenomes-Tr:CAL34972,GOA:Q0PA46,InterPro:IPR003425,UniProtKB/TrEMBL:Q0PA46,NCBI_GP:CAL34972.1;Name=CAL34972.1;Note=Original (2000) note: Cj0844c%2C possible integral membrane protein%2C len: 93 aa%3B 38.4%25 identity to HP0644%3B~Updated (2006) note: Pfam domain PF02325 YGGT family identified within CDS. This family consists of a repeat found in conserved hypothetical integral membrane proteins. The function of this region and the proteins which possess it is unknown. Also%2C two probable transmembrane helices predicted by TMHMM2.0. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0844c;product=putative integral membrane protein;protein_id=CAL34972.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	791655	791723	.	-	.	ID=id-Cj0844c;Note=2 probable transmembrane helices predicted for Cj0844c by TMHMM2.0 at aa 7-29 and 67-89;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0844c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	791835	791903	.	-	.	ID=id-Cj0844c;Note=2 probable transmembrane helices predicted for Cj0844c by TMHMM2.0 at aa 7-29 and 67-89;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0844c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	791658	791903	.	-	.	ID=id-Cj0844c-2;Note=HMMPfam hit to PF02325%2C YGGT family%2C score 6.1e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF02325;locus_tag=Cj0844c
gi|15791399|ref|NC_002163.1|	EMBL	gene	791924	793219	.	-	.	ID=gene-Cj0845c;Name=gltX;gbkey=Gene;gene=gltX;gene_biotype=protein_coding;locus_tag=Cj0845c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	791924	793219	.	-	0	ID=cds-CAL34973.1;Parent=gene-Cj0845c;Dbxref=EnsemblGenomes-Gn:Cj0845c,EnsemblGenomes-Tr:CAL34973,GOA:Q9PP78,InterPro:IPR000924,InterPro:IPR001412,InterPro:IPR004527,InterPro:IPR008925,InterPro:IPR014729,InterPro:IPR020058,InterPro:IPR020061,InterPro:IPR020751,NCBI_GP:CAL34973.1;Name=CAL34973.1;Note=Original (2000) note: Cj0845c%2C gltX%2C probable glutamyl-tRNA synthetase%2C len: 431 aa%3B similar to many e.g. SYE_ECOLI glutamyl-tRNA synthetase (EC 6.1.1.17) (471 aa)%2C fasta scores%3B opt: 726 z-score: 808.6 E(): 0%2C 33.8%25 identity in 447 aa overlap. 51.0%25 identity to HP0643. Also similar to Cj1288c%2C gltX2%2C (37.0%25 identity in 449 aa overlap). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature%2C and Pfam match to entry PF00749 tRNA-synt_1c%2C tRNA synthetases class I%3B~Updated (2006) note: Characterised within Escherichia coli with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:3015933;gbkey=CDS;gene=gltX;inference=protein motif:Prosite:PS00178;locus_tag=Cj0845c;product=glutamyl-tRNA synthetase;protein_id=CAL34973.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	792314	793213	.	-	.	ID=id-Cj0845c;Note=HMMPfam hit to PF00749%2C tRNA synthetases class I (E and Q)%2C cata%2C score 1.1e-85;gbkey=misc_feature;gene=gltX;inference=protein motif:Pfam:PF00749;locus_tag=Cj0845c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	793169	793204	.	-	.	ID=id-Cj0845c-2;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=gltX;inference=protein motif:Prosite:PS00178;locus_tag=Cj0845c
gi|15791399|ref|NC_002163.1|	EMBL	gene	793305	794429	.	+	.	ID=gene-Cj0846;Name=Cj0846;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0846
gi|15791399|ref|NC_002163.1|	EMBL	CDS	793305	794429	.	+	0	ID=cds-CAL34974.1;Parent=gene-Cj0846;Dbxref=EnsemblGenomes-Gn:Cj0846,EnsemblGenomes-Tr:CAL34974,GOA:Q9PP77,InterPro:IPR024654,InterPro:IPR029052,NCBI_GP:CAL34974.1;Name=CAL34974.1;Note=Original (2000) note: Cj0846%2C probable integral membrane protein%2C len: 374 aa%3B contains several probable membrane spanning regions in N-terminal half%2C C-terminal half is simalar to several hypothetical proteins e.g. YPBG_BACSU (259 aa)%2C fasta scores%3B opt: 197 z-score: 233.7 E(): 1e-05%2C 28.6%25 identity in 238 aa overlap. 38.8%25 identity to HP1044%3B~Updated (2006) note: Pfam domain PF00149 Calcineurin-like phosphoesterase and Prosite domain PS00142 Peptidase M%2C neutral zinc metallopeptidases%2Czinc-binding site identified within CDS. Also%2C four probable transmembrane helices predicted by TMHMM2.0. Product function modified to more specific family member based on motif matches. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0846;product=putative metallophosphoesterase;protein_id=CAL34974.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	793314	793370	.	+	.	ID=id-Cj0846;Note=4 probable transmembrane helices predicted for Cj0846 by TMHMM2.0 at aa 4-22%2C 34-56%2C 71-93 and 106-128;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0846;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	793404	793472	.	+	.	ID=id-Cj0846;Note=4 probable transmembrane helices predicted for Cj0846 by TMHMM2.0 at aa 4-22%2C 34-56%2C 71-93 and 106-128;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0846;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	793515	793583	.	+	.	ID=id-Cj0846;Note=4 probable transmembrane helices predicted for Cj0846 by TMHMM2.0 at aa 4-22%2C 34-56%2C 71-93 and 106-128;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0846;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	793620	793688	.	+	.	ID=id-Cj0846;Note=4 probable transmembrane helices predicted for Cj0846 by TMHMM2.0 at aa 4-22%2C 34-56%2C 71-93 and 106-128;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0846;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	793755	794252	.	+	.	ID=id-Cj0846-2;Note=HMMPfam hit to PF00149%2C Calcineurin-like phosphoesterase%2C score 1.2e-12;gbkey=misc_feature;inference=protein motif:Pfam:PF00149;locus_tag=Cj0846
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	793959	793988	.	+	.	ID=id-Cj0846-3;Note=PS00142 Neutral zinc metallopeptidases%2Czinc-binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00142;locus_tag=Cj0846
gi|15791399|ref|NC_002163.1|	EMBL	gene	794426	795226	.	+	.	ID=gene-Cj0847;Name=psd;gbkey=Gene;gene=psd;gene_biotype=protein_coding;locus_tag=Cj0847
gi|15791399|ref|NC_002163.1|	EMBL	CDS	794426	795226	.	+	0	ID=cds-CAL34975.1;Parent=gene-Cj0847;Dbxref=EnsemblGenomes-Gn:Cj0847,EnsemblGenomes-Tr:CAL34975,GOA:Q9PP76,InterPro:IPR003817,NCBI_GP:CAL34975.1;Name=CAL34975.1;Note=Original (2000) note: Cj0847%2C psd%2C possible phosphatidylserine decarboxylase%2C len: 266 aa%3B similar to e.g. DPSD_ECOLI phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65) (322 aa)%2C fasta scores%3B opt: 380 z-score: 461.6 E(): 2.1e-18%2C 31.6%25 identity in 272 aa overlap. 48.0%25 identity to HP1357%3B~Updated (2006) note: Pfam domain PF02666 Phosphatidylserine decarboxylase identified within CDS. Further support given to product function. Characterised in Escherichia coli with marginal identity score. Appropriate motifs present. Putative removed from product function. Also%2C product function modified with proenzyme added. This is becuase there are alpha and beta chain versions. Functional classification - Synthesis and modification of macromolecules - Phospholipids%3B~PMID:3042771%2C PMID:9422599;gbkey=CDS;gene=psd;inference=protein motif:Pfam:PF02666;locus_tag=Cj0847;product=phosphatidylserine decarboxylase proenzyme;protein_id=CAL34975.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	794576	795223	.	+	.	ID=id-Cj0847;Note=HMMPfam hit to PF02666%2C Phosphatidylserine decarboxylase%2C score 1.8e-45;gbkey=misc_feature;gene=psd;inference=protein motif:Pfam:PF02666;locus_tag=Cj0847
gi|15791399|ref|NC_002163.1|	EMBL	gene	795223	795504	.	-	.	ID=gene-Cj0848c;Name=Cj0848c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0848c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	795223	795504	.	-	0	ID=cds-CAL34976.1;Parent=gene-Cj0848c;Dbxref=EnsemblGenomes-Gn:Cj0848c,EnsemblGenomes-Tr:CAL34976,GOA:Q0PA42,InterPro:IPR004683,InterPro:IPR006135,InterPro:IPR029025,UniProtKB/TrEMBL:Q0PA42,NCBI_GP:CAL34976.1;Name=CAL34976.1;Note=Original (2000) note: Cj0848c%2C unknown%2C len: 93 aa%3B similar to hypothetical proteins e.g. TR:O34867 (EMBL:AJ000975) B. subtilis YLQH protein (93 aa)%2C fasta scores%3B opt: 284 z-score: 365.6 E(): 4.5e-13%2C 47.3%25 identity in 91 aa overlap. Also similar to C-terminus of flhB possible flagellar transport proteins e.g. FLHB_ECOLI flagellar biosynthetic protein FLHB (382 aa)%2C fasta scores%3B opt: 182 z-score: 232.8 E(): 1.1e-05%2C 41.6%25 identity in 77 aa overlap. 39.2%25 identity to HP1575 (annotated as flhB). Also similar to C-terminus of Cj0335%2CflhB (40.7%25 identity in 81 aa overlap)%3B~Updated (2006) note: Pfam domain PF01312 Bac_export_2%2C FlhB HrpN YscU SpaS Family identified within CDS. All of these proteins export peptides using the type III secretion system. The peptides exported are quite diverse. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01312;locus_tag=Cj0848c;product=conserved hypothetical protein Cj0848c;protein_id=CAL34976.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	795501	797660	.	-	.	ID=gene-Cj0849c;Name=Cj0849c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0849c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	795501	797660	.	-	0	ID=cds-CAL34977.1;Parent=gene-Cj0849c;Dbxref=EnsemblGenomes-Gn:Cj0849c,EnsemblGenomes-Tr:CAL34977,InterPro:IPR021136,UniProtKB/TrEMBL:Q0PA41,NCBI_GP:CAL34977.1;Name=CAL34977.1;Note=Original (2000) note: Cj0849c%2C unknown%2C len: 719 aa%3B no Hp ortholog%2C some similarity to Cj0041 (23.1%25 identity in 566 aa overlap). Contain Asn-rich region near centre%3B~Updated (2006) note: Prosite domain PS00063 Aldo/keto reductase family putative active site signature found within CDS. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS00063;locus_tag=Cj0849c;product=conserved hypothetical protein Cj0849c;protein_id=CAL34977.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	795528	795575	.	-	.	ID=id-Cj0849c;Note=PS00063 Aldo/keto reductase family putative active site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00063;locus_tag=Cj0849c
gi|15791399|ref|NC_002163.1|	EMBL	gene	797653	798840	.	-	.	ID=gene-Cj0850c;Name=Cj0850c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0850c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	797653	798840	.	-	0	ID=cds-CAL34978.1;Parent=gene-Cj0850c;Dbxref=EnsemblGenomes-Gn:Cj0850c,EnsemblGenomes-Tr:CAL34978,GOA:Q0PA40,InterPro:IPR005829,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0PA40,NCBI_GP:CAL34978.1;Name=CAL34978.1;Note=Original (2000) note: Cj0850c%2C transmembrane transport protein%2C len: 395 aa%3B similar to hypothetical transport proteins e.g. YCAD_ECOLI (382 aa)%2C fasta scores%3B opt: 431 z-score: 481.6 E(): 1.6e-19%2C 27.6%25 identity in 366 aa overlap. No Hp ortholog. Contains S00216 Sugar transport proteins signature 1%2C and Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporters%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Also%2Ctwelve probable transmembrane helices predicted by TMHMM2.0. The MFS family contains functions such as uniporters%2C symporters or antiporters. MFS proteins typically contain 12 transmembrane regions. Product modified to more specific family based on motif match. Functional classification - Transport/binding proteins -Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;product=putative MFS (Major Facilitator Superfamily) transport protein;protein_id=CAL34978.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	797704	797772	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	797785	797853	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	797911	797979	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	797989	798048	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798067	798135	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798163	798231	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798304	798363	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798373	798441	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798478	798546	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798574	798633	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798652	798711	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798739	798807	.	-	.	ID=id-Cj0850c;Note=12 probable transmembrane helices predicted for Cj0850c by TMHMM2.0 at aa 12-34%2C 44-63%2C 70-89%2C 99-121%2C134-156%2C 160-179%2C 204-226%2C 236-258%2C 265-284%2C 288-310%2C330-352 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0850c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	797671	798819	.	-	.	ID=id-Cj0850c-2;Note=HMMPfam hit to PF00083%2C Sugar (and other) transporter%2C score 4.6e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF00083;locus_tag=Cj0850c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	797791	798804	.	-	.	ID=id-Cj0850c-3;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 3.5e-24;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj0850c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798028	798081	.	-	.	ID=id-Cj0850c-4;Note=PS00216 Sugar transport proteins signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00216;locus_tag=Cj0850c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798688	798720	.	-	.	ID=id-Cj0850c-5;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0850c
gi|15791399|ref|NC_002163.1|	EMBL	gene	798818	799321	.	-	.	ID=gene-Cj0851c;Name=Cj0851c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0851c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	798818	799321	.	-	0	ID=cds-CAL34979.1;Parent=gene-Cj0851c;Dbxref=EnsemblGenomes-Gn:Cj0851c,EnsemblGenomes-Tr:CAL34979,UniProtKB/TrEMBL:Q0PA39,NCBI_GP:CAL34979.1;Name=CAL34979.1;Note=Original (2000) note: Cj0851c%2C probable integral membrane protein%2C len: 167 aa%3B some similarity to YCIB_BUCAP putative integral membrane protein from Buchnera aphidicola (177 aa)%2C fasta scores%3B opt: 139 z-score: 180.5 E(): 0.0093%2C 30.0%25 identity in 160 aa overlap. No Hp match%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. Paper identified giving further clues to product function. Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:16045618;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0851c;product=putative integral membrane protein;protein_id=CAL34979.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798848	798916	.	-	.	ID=id-Cj0851c;Note=4 probable transmembrane helices predicted for Cj0851c by TMHMM2.0 at aa 7-22%2C 32-54%2C 104-126 and 136-158;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0851c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	798944	799012	.	-	.	ID=id-Cj0851c;Note=4 probable transmembrane helices predicted for Cj0851c by TMHMM2.0 at aa 7-22%2C 32-54%2C 104-126 and 136-158;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0851c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	799160	799228	.	-	.	ID=id-Cj0851c;Note=4 probable transmembrane helices predicted for Cj0851c by TMHMM2.0 at aa 7-22%2C 32-54%2C 104-126 and 136-158;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0851c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	799256	799303	.	-	.	ID=id-Cj0851c;Note=4 probable transmembrane helices predicted for Cj0851c by TMHMM2.0 at aa 7-22%2C 32-54%2C 104-126 and 136-158;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0851c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	gene	799321	799650	.	-	.	ID=gene-Cj0852c;Name=Cj0852c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0852c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	799321	799650	.	-	0	ID=cds-CAL34980.1;Parent=gene-Cj0852c;Dbxref=EnsemblGenomes-Gn:Cj0852c,EnsemblGenomes-Tr:CAL34980,UniProtKB/TrEMBL:Q0PA38,NCBI_GP:CAL34980.1;Name=CAL34980.1;Note=Original (2000) note: Cj0852c%2C possible integral membrane protein%2C len: 109 aa%3B some similarity to hypothetical proteins e.g. TR:O27758 (EMBL:AE000929) Methanobacterium thermoautotrophicum MTH1725 (92 aa)%2Cfasta scores%3B opt: 123 z-score: 165.5 E(): 0.064%2C 32.7%25 identity in 98 aa overlap. 55.0%25 identity to HP0307%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0852c;product=putative integral membrane protein;protein_id=CAL34980.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	799414	799470	.	-	.	ID=id-Cj0852c;Note=2 probable transmembrane helices predicted for Cj0852c by TMHMM2.0 at aa 29-51 and 61-79;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0852c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	799498	799566	.	-	.	ID=id-Cj0852c;Note=2 probable transmembrane helices predicted for Cj0852c by TMHMM2.0 at aa 29-51 and 61-79;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0852c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	799647	800921	.	-	.	ID=gene-Cj0853c;Name=hemL;gbkey=Gene;gene=hemL;gene_biotype=protein_coding;locus_tag=Cj0853c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	799647	800921	.	-	0	ID=cds-CAL34981.1;Parent=gene-Cj0853c;Dbxref=EnsemblGenomes-Gn:Cj0853c,EnsemblGenomes-Tr:CAL34981,GOA:Q9PP70,InterPro:IPR004639,InterPro:IPR005814,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAL34981.1;Name=CAL34981.1;Note=Original (2000) note: Cj0853c%2C hemL%2C probable glutamate-1-semialdehyde 2%2C1-aminomutase%2C len: 424 aa%3B highly similar to many e.g. GSA_ECOLI glutamate-1-semialdehyde 2%2C1-aminomutase (EC 5.4.3.8) (426 aa)%2C fasta scores%3B opt: 1377 z-score: 1553.3 E(): 0%2C 49.9%25 identity in 417 aa overlap. 59.8%25 identity to HP0306 Contains PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site%2C and Pfam match to entry PF00202 aminotran_3%2C Aminotransferases class-III pyridoxal-phosphate%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Heme%3B~PMID:2045363;gbkey=CDS;gene=hemL;inference=protein motif:Prosite:PS00600;locus_tag=Cj0853c;product=glutamate-1-semialdehyde 2%2C1-aminomutase;protein_id=CAL34981.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	799659	800858	.	-	.	ID=id-Cj0853c;Note=HMMPfam hit to PF00202%2C Aminotransferase class-III%2Cscore 3.5e-96;gbkey=misc_feature;gene=hemL;inference=protein motif:Pfam:PF00202;locus_tag=Cj0853c
gi|15791399|ref|NC_002163.1|	EMBL	gene	800918	801265	.	-	.	ID=gene-Cj0854c;Name=Cj0854c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0854c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	800918	801265	.	-	0	ID=cds-CAL34982.1;Parent=gene-Cj0854c;Dbxref=EnsemblGenomes-Gn:Cj0854c,EnsemblGenomes-Tr:CAL34982,GOA:Q0PA36,InterPro:IPR009056,UniProtKB/TrEMBL:Q0PA36,NCBI_GP:CAL34982.1;Name=CAL34982.1;Note=Original (2000) note: Cj0854c%2C probable periplasmic protein%2C len: 115 aa%3B 37.9%25 identity to HP0236. Contains N-terminal signal sequence and PS00190 Cytochrome c family heme-binding site signature. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Prosite:PS00190;locus_tag=Cj0854c;product=putative periplasmic protein;protein_id=CAL34982.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	801137	801154	.	-	.	ID=id-Cj0854c;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0854c
gi|15791399|ref|NC_002163.1|	EMBL	gene	801345	802193	.	+	.	ID=gene-Cj0855;Name=folD;gbkey=Gene;gene=folD;gene_biotype=protein_coding;locus_tag=Cj0855
gi|15791399|ref|NC_002163.1|	EMBL	CDS	801345	802193	.	+	0	ID=cds-CAL34983.1;Parent=gene-Cj0855;Dbxref=EnsemblGenomes-Gn:Cj0855,EnsemblGenomes-Tr:CAL34983,GOA:Q0PA35,InterPro:IPR000672,InterPro:IPR016040,InterPro:IPR020630,InterPro:IPR020631,InterPro:IPR020867,PDB:3P2O,NCBI_GP:CAL34983.1;Name=CAL34983.1;Note=Original (2000) note: Cj0855%2C folD%2C probable methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase%2Clen: 282 aa%3B highly similar to many e.g. FOLD_ECOLI methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5) / methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) (287 aa)%2C fasta scores%3B opt: 920 z-score: 1106.6 E(): 0%2C54.2%25 identity in 275 aa overlap. 54.9%25 identity to HP0577. Contains PS00766 and PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signatures 1 and 2%2C and Pfam match to entry PF00763 THF_DHG_CYH%2C Tetrahydrofolate dehydrogenase/cyclohydrolase%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Folic acid%3B~PMID:1748668%2C PMID:10386884;gbkey=CDS;gene=folD;inference=protein motif:Prosite:PS00767;locus_tag=Cj0855;product=methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase;protein_id=CAL34983.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	801348	801698	.	+	.	ID=id-Cj0855;Note=HMMPfam hit to PF00763%2C Tetrahydrofolate dehydrogenase/cyclohyd%2C score 3.6e-53;gbkey=misc_feature;gene=folD;inference=protein motif:Pfam:PF00763;locus_tag=Cj0855
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	801561	801638	.	+	.	ID=id-Cj0855-2;Note=PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1;gbkey=misc_feature;gene=folD;inference=protein motif:Prosite:PS00766;locus_tag=Cj0855
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	801702	802187	.	+	.	ID=id-Cj0855-3;Note=HMMPfam hit to PF02882%2C Tetrahydrofolate dehydrogenase/cyclohyd%2C score 8.6e-103;gbkey=misc_feature;gene=folD;inference=protein motif:Pfam:PF02882;locus_tag=Cj0855
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	802116	802142	.	+	.	ID=id-Cj0855-4;Note=PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2;gbkey=misc_feature;gene=folD;inference=protein motif:Prosite:PS00767;locus_tag=Cj0855
gi|15791399|ref|NC_002163.1|	EMBL	gene	802203	803051	.	+	.	ID=gene-Cj0856;Name=lepP;gbkey=Gene;gene=lepP;gene_biotype=protein_coding;locus_tag=Cj0856
gi|15791399|ref|NC_002163.1|	EMBL	CDS	802203	803051	.	+	0	ID=cds-CAL34984.1;Parent=gene-Cj0856;Dbxref=EnsemblGenomes-Gn:Cj0856,EnsemblGenomes-Tr:CAL34984,GOA:Q0PA34,InterPro:IPR000223,InterPro:IPR015927,InterPro:IPR019758,InterPro:IPR019759,InterPro:IPR028360,UniProtKB/TrEMBL:Q0PA34,NCBI_GP:CAL34984.1;Name=CAL34984.1;Note=Original (2000) note: Cj0856%2C lepP%2C probable signal peptidase I%2C len: 282 aa%3B similar to many e.g. LEP_ECOLI signal peptidase I (EC 3.4.21.89) (324 aa)%2C fasta scores%3B opt: 339 z-score: 395.2 E(): 1e-14%2C 33.7%25 identity in 270 aa overlap. 46.2%25 identity to HP0576. Contains PS00761 Signal peptidases I signature 3 and Pfam match to entry PF00461 signal_pept_I%2C Signal peptidases I%3B~Updated (2006) note: Pfam domain PF00717 Peptidase S24-like identified within CDS. Also%2C one probable transmembrane helix predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification -Protein and peptide secretion%3B~PMID:9823901;gbkey=CDS;gene=lepP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0856;product=signal peptidase I;protein_id=CAL34984.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	802239	802307	.	+	.	ID=id-Cj0856;Note=1 probable transmembrane helix predicted for Cj0856 by TMHMM2.0 at aa 13-35;gbkey=misc_feature;gene=lepP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0856
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	802299	802586	.	+	.	ID=id-Cj0856-2;Note=HMMPfam hit to PF00717%2C Peptidase S24-like%2C score 6e-18;gbkey=misc_feature;gene=lepP;inference=protein motif:Pfam:PF00717;locus_tag=Cj0856
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	802836	802877	.	+	.	ID=id-Cj0856-3;Note=PS00761 Signal peptidases I signature 3;gbkey=misc_feature;gene=lepP;inference=protein motif:Prosite:PS00761;locus_tag=Cj0856
gi|15791399|ref|NC_002163.1|	EMBL	gene	803073	804233	.	-	.	ID=gene-Cj0857c;Name=moeA;gbkey=Gene;gene=moeA;gene_biotype=protein_coding;locus_tag=Cj0857c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	803073	804233	.	-	0	ID=cds-CAL34985.1;Parent=gene-Cj0857c;Dbxref=EnsemblGenomes-Gn:Cj0857c,EnsemblGenomes-Tr:CAL34985,GOA:Q0PA33,InterPro:IPR001453,InterPro:IPR005110,InterPro:IPR005111,UniProtKB/TrEMBL:Q0PA33,NCBI_GP:CAL34985.1;Name=CAL34985.1;Note=Original (2000) note: Cj0857c%2C moeA%2C possible molybdopterin biosynthesis protein%2C len: 386 aa%3B similar to many e.g. MOEA_ECOLI molybdopterin biosynthesis MOEA protein (411 aa)%2C fasta scores%3B opt: 602 z-score: 691.1 E(): 3.4e-31%2C 29.2%25 identity in 387 aa overlap. 37.0%25 identity to HP0172. Also similar to Cj1519 (33.3%25 identity in 378 aa overlap). Contains Pfam match to entry PF00994 MoCF_biosynth%2C Molybdenum cofactor biosynthesis protein%3B~Updated (2006) note: Pfam domains PF03454 MoeA C-terminal region (domain IV) and PF03453 MoeA N-terminal region (domain I and II) were identified within CDS. Further support given to product function. Characterised in Escherichia coli with marginal similaritly score. Putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Molybdopterin%3B~PMID:9515915%2C PMID:12719427;gbkey=CDS;gene=moeA;inference=protein motif:Pfam:PF03454;locus_tag=Cj0857c;product=putative molybdopterin biosynthesis protein;protein_id=CAL34985.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	803079	803285	.	-	.	ID=id-Cj0857c;Note=HMMPfam hit to PF03454%2C MoeA C-terminal region (domain IV)%2C score 0.01;gbkey=misc_feature;gene=moeA;inference=protein motif:Pfam:PF03454;locus_tag=Cj0857c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	803340	803726	.	-	.	ID=id-Cj0857c-2;Note=HMMPfam hit to PF00994%2C Probable molybdopterin binding domain%2C score 4.8e-24;gbkey=misc_feature;gene=moeA;inference=protein motif:Pfam:PF00994;locus_tag=Cj0857c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	803754	804233	.	-	.	ID=id-Cj0857c-3;Note=HMMPfam hit to PF03453%2C MoeA N-terminal region (domain I and II%2C score 6.8e-67;gbkey=misc_feature;gene=moeA;inference=protein motif:Pfam:PF03453;locus_tag=Cj0857c
gi|15791399|ref|NC_002163.1|	EMBL	gene	804230	805486	.	-	.	ID=gene-Cj0858c;Name=murA;gbkey=Gene;gene=murA;gene_biotype=protein_coding;locus_tag=Cj0858c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	804230	805486	.	-	0	ID=cds-CAL34986.1;Parent=gene-Cj0858c;Dbxref=EnsemblGenomes-Gn:Cj0858c,EnsemblGenomes-Tr:CAL34986,GOA:Q9PP65,InterPro:IPR001986,InterPro:IPR005750,InterPro:IPR013792,NCBI_GP:CAL34986.1;Name=CAL34986.1;Note=Original (2000) note: Cj0858c%2C murA%2CUDP-N-acetylglucosamine 1-carboxyvinyltransferase%2C len: 418 aa%3B highly similar to e.g. MURA_ECOLI UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7) (419 aa)%2C fasta scores%3B opt: 1216 z-score: 1386.5 E(): 0%2C 48.6%25 identity in 420 aa overlap. 59.6%25 identity to HP0648. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and Pfam match to entry PF00275 EPSP_syntase%2CEPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:8664284%2C PMID:9654090;gbkey=CDS;gene=murA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0858c;product=UDP-N-acetylglucosamine 1-carboxyvinyltransferase;protein_id=CAL34986.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	804269	805465	.	-	.	ID=id-Cj0858c;Note=HMMPfam hit to PF00275%2C EPSP synthase (3-phosphoshikimate 1-car%2C score 6.4e-129;gbkey=misc_feature;gene=murA;inference=protein motif:Pfam:PF00275;locus_tag=Cj0858c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	804950	804973	.	-	.	ID=id-Cj0858c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=murA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0858c
gi|15791399|ref|NC_002163.1|	EMBL	gene	805552	805980	.	-	.	ID=gene-Cj0859c;Name=Cj0859c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0859c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	805552	805980	.	-	0	ID=cds-CAL34987.1;Parent=gene-Cj0859c;Dbxref=EnsemblGenomes-Gn:Cj0859c,EnsemblGenomes-Tr:CAL34987,UniProtKB/TrEMBL:Q0PA31,NCBI_GP:CAL34987.1;Name=CAL34987.1;Note=Original (2000) note: Cj0859c%2C unknown%2C len: 142 aa%3B no Hp match. Gln-rich in C-term%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0859c;product=hypothetical protein Cj0859c;protein_id=CAL34987.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	806075	806947	.	+	.	ID=gene-Cj0860;Name=Cj0860;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0860
gi|15791399|ref|NC_002163.1|	EMBL	CDS	806075	806947	.	+	0	ID=cds-CAL34988.1;Parent=gene-Cj0860;Dbxref=EnsemblGenomes-Gn:Cj0860,EnsemblGenomes-Tr:CAL34988,GOA:Q0PA30,InterPro:IPR000620,UniProtKB/TrEMBL:Q0PA30,NCBI_GP:CAL34988.1;Name=CAL34988.1;Note=Updated (2006) note: Ten probable transmembrane helices predicted by TMHMM2.0%3B~Original (2000) note: Cj0860%2C probable integral membrane protein%2C len: 290 aa%3B similar to hypothetical proteins e.g. YICL_ECOLI (307 aa)%2C fasta scores%3B opt: 516 z-score: 611.4 E(): 9.3e-27%2C 32.0%25 identity in 284 aa overlap. No Hp match. Contains 2x Pfam match to entry PF00892 DUF6%2C Integral membrane protein. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0860;product=putative integral membrane protein;protein_id=CAL34988.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806078	806146	.	+	.	ID=id-Cj0860;Note=10 probable transmembrane helices predicted for Cj0860 by TMHMM2.0 at aa 2-24%2C 28-50%2C 63-82%2C 92-111%2C118-136%2C 146-168%2C 175-197%2C 212-231%2C 238-260 and 265-284;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0860;part=1/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806156	806224	.	+	.	ID=id-Cj0860;Note=10 probable transmembrane helices predicted for Cj0860 by TMHMM2.0 at aa 2-24%2C 28-50%2C 63-82%2C 92-111%2C118-136%2C 146-168%2C 175-197%2C 212-231%2C 238-260 and 265-284;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0860;part=2/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806261	806320	.	+	.	ID=id-Cj0860;Note=10 probable transmembrane helices predicted for Cj0860 by TMHMM2.0 at aa 2-24%2C 28-50%2C 63-82%2C 92-111%2C118-136%2C 146-168%2C 175-197%2C 212-231%2C 238-260 and 265-284;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0860;part=3/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806348	806407	.	+	.	ID=id-Cj0860;Note=10 probable transmembrane helices predicted for Cj0860 by TMHMM2.0 at aa 2-24%2C 28-50%2C 63-82%2C 92-111%2C118-136%2C 146-168%2C 175-197%2C 212-231%2C 238-260 and 265-284;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0860;part=4/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806426	806482	.	+	.	ID=id-Cj0860;Note=10 probable transmembrane helices predicted for Cj0860 by TMHMM2.0 at aa 2-24%2C 28-50%2C 63-82%2C 92-111%2C118-136%2C 146-168%2C 175-197%2C 212-231%2C 238-260 and 265-284;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0860;part=5/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806510	806578	.	+	.	ID=id-Cj0860;Note=10 probable transmembrane helices predicted for Cj0860 by TMHMM2.0 at aa 2-24%2C 28-50%2C 63-82%2C 92-111%2C118-136%2C 146-168%2C 175-197%2C 212-231%2C 238-260 and 265-284;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0860;part=6/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806597	806665	.	+	.	ID=id-Cj0860;Note=10 probable transmembrane helices predicted for Cj0860 by TMHMM2.0 at aa 2-24%2C 28-50%2C 63-82%2C 92-111%2C118-136%2C 146-168%2C 175-197%2C 212-231%2C 238-260 and 265-284;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0860;part=7/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806708	806767	.	+	.	ID=id-Cj0860;Note=10 probable transmembrane helices predicted for Cj0860 by TMHMM2.0 at aa 2-24%2C 28-50%2C 63-82%2C 92-111%2C118-136%2C 146-168%2C 175-197%2C 212-231%2C 238-260 and 265-284;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0860;part=8/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806786	806854	.	+	.	ID=id-Cj0860;Note=10 probable transmembrane helices predicted for Cj0860 by TMHMM2.0 at aa 2-24%2C 28-50%2C 63-82%2C 92-111%2C118-136%2C 146-168%2C 175-197%2C 212-231%2C 238-260 and 265-284;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0860;part=9/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806867	806926	.	+	.	ID=id-Cj0860;Note=10 probable transmembrane helices predicted for Cj0860 by TMHMM2.0 at aa 2-24%2C 28-50%2C 63-82%2C 92-111%2C118-136%2C 146-168%2C 175-197%2C 212-231%2C 238-260 and 265-284;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0860;part=10/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806105	806485	.	+	.	ID=id-Cj0860-2;Note=HMMPfam hit to PF00892%2C Integral membrane protein DUF6%2C score 4.2e-14;gbkey=misc_feature;inference=protein motif:Pfam:PF00892;locus_tag=Cj0860
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806549	806929	.	+	.	ID=id-Cj0860-3;Note=HMMPfam hit to PF00892%2C Integral membrane protein DUF6%2C score 5.2e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF00892;locus_tag=Cj0860
gi|15791399|ref|NC_002163.1|	EMBL	gene	806934	807500	.	-	.	ID=gene-Cj0861c;Name=pabA;gbkey=Gene;gene=pabA;gene_biotype=protein_coding;locus_tag=Cj0861c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	806934	807500	.	-	0	ID=cds-CAL34989.1;Parent=gene-Cj0861c;Dbxref=EnsemblGenomes-Gn:Cj0861c,EnsemblGenomes-Tr:CAL34989,GOA:Q0PA29,InterPro:IPR006221,InterPro:IPR017926,InterPro:IPR029062,UniProtKB/TrEMBL:Q0PA29,NCBI_GP:CAL34989.1;Name=CAL34989.1;Note=Original (2000) note: Cj0861c%2C pabA%2C probable para-aminobenzoate synthase glutamine amidotransferase component II%2C len: 188 aa%3B simlar to e.g. PABA_BACSU para-aminobenzoate synthase glutamine amidotransferase component II (EC 4.1.3.-) (194 aa)%2C fasta scores%3B opt: 534 z-score: 632.3 E(): 6.4e-28%2C 44.6%25 identity in 186 aa overlap%2C and PABA_ECOLI (187 aa)%2C fasta scores%3B opt: 475 z-score: 564.2 E(): 4e-24%2C 36.8%25 identity in 185 aa overlap. 38.6%25 identity to HP1281 annotated as anthranilate synthase component II (trpD). Contains Pfam match to entry PF00117 GATase%2C Glutamine amidotransferases class-I%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Folic acid%3B~PMID:8096767%2C PMID:2123867;gbkey=CDS;gene=pabA;inference=protein motif:Pfam:PF00117;locus_tag=Cj0861c;product=para-aminobenzoate synthase glutamine amidotransferase component II;protein_id=CAL34989.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	806937	807488	.	-	.	ID=id-Cj0861c;Note=HMMPfam hit to PF00117%2C Glutamine amidotransferase class-I%2C score 1.2e-59;gbkey=misc_feature;gene=pabA;inference=protein motif:Pfam:PF00117;locus_tag=Cj0861c
gi|15791399|ref|NC_002163.1|	EMBL	gene	807497	809281	.	-	.	ID=gene-Cj0862c;Name=pabB;gbkey=Gene;gene=pabB;gene_biotype=protein_coding;locus_tag=Cj0862c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	807497	809281	.	-	0	ID=cds-CAL34990.1;Parent=gene-Cj0862c;Dbxref=EnsemblGenomes-Gn:Cj0862c,EnsemblGenomes-Tr:CAL34990,GOA:Q0PA28,InterPro:IPR001544,InterPro:IPR005801,InterPro:IPR015890,UniProtKB/TrEMBL:Q0PA28,NCBI_GP:CAL34990.1;Name=CAL34990.1;Note=Original (2000) note: Cj0862c%2C pabB%2C probable para-aminobenzoate synthase component I%2C len: 594 aa%3B simlar to e.g. PABB_ECOLI para-aminobenzoate synthase component I (EC 4.1.3.-) (453 aa)%2C fasta scores%3B opt: 541 z-score: 604.3 E(): 2.3e-26%2C 35.7%25 identity in 252 aa overlap. 39.3%25 identity to HP0293. Contains Pfam match to entry PF00425 chorismate_bind%2C chorismate binding enzyme%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Folic acid%3B~PMID:11841211%2C PMID:2251281;gbkey=CDS;gene=pabB;inference=protein motif:Pfam:PF00425;locus_tag=Cj0862c;product=para-aminobenzoate synthase component I;protein_id=CAL34990.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	808220	808987	.	-	.	ID=id-Cj0862c;Note=HMMPfam hit to PF00425%2C chorismate binding enzyme%2Cscore 7.6e-45;gbkey=misc_feature;gene=pabB;inference=protein motif:Pfam:PF00425;locus_tag=Cj0862c
gi|15791399|ref|NC_002163.1|	EMBL	gene	809271	810335	.	-	.	ID=gene-Cj0863c;Name=xerD;gbkey=Gene;gene=xerD;gene_biotype=protein_coding;locus_tag=Cj0863c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	809271	810335	.	-	0	ID=cds-CAL34991.1;Parent=gene-Cj0863c;Dbxref=EnsemblGenomes-Gn:Cj0863c,EnsemblGenomes-Tr:CAL34991,GOA:Q0PA27,InterPro:IPR002104,InterPro:IPR011010,InterPro:IPR013762,UniProtKB/TrEMBL:Q0PA27,NCBI_GP:CAL34991.1;Name=CAL34991.1;Note=Original (2000) note: Cj0863c%2C xerD%2C probable DNA recombinase%2C len: 354 aa%3B similar to e.g. XERD_ECOLI integrase/recombinase XERD (298 aa)%2C fasta scores%3B opt: 336 z-score: 389.2 E(): 2.2e-14%2C 29.5%25 identity in 298 aa overlap. 47.5%25 identity to HP0675 (xerC) and 30.5%25 identity to HP0995 (xerD). Contains Pfam match to entry PF00589 Phage_integrase%2C 'Phage' integrase family%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:9311978%2C PMID10635320%2C PMID11832210;gbkey=CDS;gene=xerD;inference=protein motif:Pfam:PF00589;locus_tag=Cj0863c;product=DNA recombinase;protein_id=CAL34991.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	809307	809834	.	-	.	ID=id-Cj0863c;Note=HMMPfam hit to PF00589%2C Phage integrase family%2Cscore 9.8e-27;gbkey=misc_feature;gene=xerD;inference=protein motif:Pfam:PF00589;locus_tag=Cj0863c
gi|15791399|ref|NC_002163.1|	EMBL	gene	810963	811322	.	+	.	ID=gene-Cj0864;Name=Cj0864;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0864
gi|15791399|ref|NC_002163.1|	EMBL	CDS	810963	811322	.	+	0	ID=cds-CAL34992.1;Parent=gene-Cj0864;Dbxref=EnsemblGenomes-Gn:Cj0864,EnsemblGenomes-Tr:CAL34992,InterPro:IPR012336,UniProtKB/TrEMBL:Q0PA26,NCBI_GP:CAL34992.1;Name=CAL34992.1;Note=Original (2000) note: Cj0864%2C probable periplasmic protein%2C len: 119 aa%3B some similarity in C-terminus to C-terminus of thiol:disulfide interchange proteins (not including active site) e.g. TR:P97037 (EMBL:U32616) Klebsiella pneumoniae disulfide isomerase (222 aa)%2C fasta scores%3B opt: 184 z-score: 240.3 E(): 4.4e-06%2C 36.9%25 identity in 84 aa overlap. No Hp match. Also similar to C-term of Cj0872 dsbA (57.3%25 identity in 82 aa overlap)%3B~Updated (2006) note: Interpro result (ipr012335) shows a thioredoxin fold within the CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0864;product=putative periplasmic protein;protein_id=CAL34992.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	811319	812119	.	+	.	ID=gene-Cj0865;Name=dsbB;gbkey=Gene;gene=dsbB;gene_biotype=protein_coding;locus_tag=Cj0865
gi|15791399|ref|NC_002163.1|	EMBL	CDS	811319	812119	.	+	0	ID=cds-CAL34993.1;Parent=gene-Cj0865;Dbxref=EnsemblGenomes-Gn:Cj0865,EnsemblGenomes-Tr:CAL34993,GOA:Q0PA25,InterPro:IPR003752,InterPro:IPR023380,NCBI_GP:CAL34993.1;Name=CAL34993.1;Note=Original (2000) note: Cj0865%2C dsbB%2C possible disulfide oxidoreductase%2C len: 266 aa%3B similar to e.g. DSBB_ECOLI disulfide bond formation protein B (disulfide oxidoreductase) (176 aa)%2C fasta scores%3B opt: 200 z-score: 250.0 E(): 1.3e-06%2C 29.9%25 identity in 137 aa overlap (the essential Cysteine residues are conserved). No Hp match%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. This CDS has been characterised as DsbB protein (PMID:15632440). It has been demonstrated that Cj0865 is indeed a disulfide oxidoreductase. This has been shown via in silico and in vivo work in E. coli and also complementation and enzymatic tests in C. jejuni. There is an alignment of different DsbB proteins (including Cj0865) with prediction of 5 transmembranehelises (not 4 as stated in annotation)%3B (P24-A39%3B F60-I74%3B S87-L101%3B F194-A214%3B F231-G246). There are some differences in amino acid sequences between Cj0865 and its ortholog from 81-176 (CJJ81176_0881). It is stated that its translation starts from the second Met (although the predicted N-terminal amino acid sequences of both proteins are identical)%2C there is also an insertion of 3 amino acids at the COOH end of protein. Thus%2C not added to protein function. Functional classification -Protein translation and modification%3B~PMID:15632440%2C PMID:7957076;gbkey=CDS;gene=dsbB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0865;product=putative disulphide oxidoreductase;protein_id=CAL34993.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	811391	811459	.	+	.	ID=id-Cj0865;Note=4 probable transmembrane helices predicted for Cj0865 by TMHMM2.0 at aa 25-47%2C 62-81%2C 198-220 and 230-247;gbkey=misc_feature;gene=dsbB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0865;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	811502	811561	.	+	.	ID=id-Cj0865;Note=4 probable transmembrane helices predicted for Cj0865 by TMHMM2.0 at aa 25-47%2C 62-81%2C 198-220 and 230-247;gbkey=misc_feature;gene=dsbB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0865;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	811910	811978	.	+	.	ID=id-Cj0865;Note=4 probable transmembrane helices predicted for Cj0865 by TMHMM2.0 at aa 25-47%2C 62-81%2C 198-220 and 230-247;gbkey=misc_feature;gene=dsbB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0865;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	812006	812059	.	+	.	ID=id-Cj0865;Note=4 probable transmembrane helices predicted for Cj0865 by TMHMM2.0 at aa 25-47%2C 62-81%2C 198-220 and 230-247;gbkey=misc_feature;gene=dsbB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0865;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	812155	812564	.	+	.	ID=gene-Cj0866;Name=Cj0866;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0866;part=1/7;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	812566	812751	.	+	.	ID=gene-Cj0866;Name=Cj0866;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0866;part=2/7;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	812753	812952	.	+	.	ID=gene-Cj0866;Name=Cj0866;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0866;part=3/7;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	812954	812980	.	+	.	ID=gene-Cj0866;Name=Cj0866;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0866;part=4/7;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	812983	813019	.	+	.	ID=gene-Cj0866;Name=Cj0866;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0866;part=5/7;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	813021	813445	.	+	.	ID=gene-Cj0866;Name=Cj0866;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0866;part=6/7;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	813448	813591	.	+	.	ID=gene-Cj0866;Name=Cj0866;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj0866;part=7/7;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	812155	812364	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	812363	812470	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	812466	812564	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	812566	812751	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	812753	812902	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	812902	812952	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	812954	812980	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	812983	813018	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	813011	813019	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	813021	813278	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	813275	813445	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	813448	813591	.	+	0	ID=cds-Cj0866;Parent=gene-Cj0866;Note=Original (2000) note: Cj0866%2C ast%2C arylsulfatase pseudogene%2C len: 1434 bp%3B almost identical to parts of TR:Q46098 (EMBL:U38280 Campylobacter jejuni strain 81-176 arylsulfatase (620 aa)%2C and similar to parts of TR:P97036 (EMBL:U32616) Klebsiella pneumoniae arylsulfate sulfotransferase (EC 2.8.2.22) (598 aa). No Hp match%3B~Updated (2006) note: Pfam domain PF05935 Arylsulfotransferase (ASST) identified within CDS. Part of stem loop also identified within C-terminal. Further support given to product function. Characterisation paper with Campylobacter jejuni included. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:8655516;gbkey=CDS;inference=protein motif:Pfam:PF05935;locus_tag=Cj0866;product=pseudogene (arylsulfatase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	812218	812363	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=1/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	812364	812466	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=2/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	812470	812564	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=3/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	812566	812751	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=4/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	812753	812902	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=5/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	812902	812952	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=6/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	812954	812980	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=7/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	812983	813011	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=8/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	813018	813019	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=9/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	813021	813275	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=10/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	813278	813445	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=11/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	813448	813573	.	+	.	ID=id-Cj0866;Note=HMMPfam hit to PF05935%2C Arylsulfotransferase (ASST)%2C score 8.2e-179;gbkey=misc_feature;inference=protein motif:Pfam:PF05935;is_ordered=true;locus_tag=Cj0866;part=12/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	813583	813628	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:813583..813628;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	813675	814316	.	+	.	ID=gene-Cj0872;Name=dsbA;gbkey=Gene;gene=dsbA;gene_biotype=protein_coding;locus_tag=Cj0872
gi|15791399|ref|NC_002163.1|	EMBL	CDS	813675	814316	.	+	0	ID=cds-CAL34995.1;Parent=gene-Cj0872;Dbxref=EnsemblGenomes-Gn:Cj0872,EnsemblGenomes-Tr:CAL34995,GOA:Q0PA24,InterPro:IPR001853,InterPro:IPR012336,UniProtKB/TrEMBL:Q0PA24,NCBI_GP:CAL34995.1;Name=CAL34995.1;Note=Original (2000) note: Cj0872%2C dsbA%2C possible protein disulphide isomerase%2C len: 213 aa%3B some similarity to e.g. DSBA_ECOLI thiol:disulfide interchange protein DSBA precursor (208 aa)%2C fasta scores%3B opt: 128 z-score: 159.8 E(): 0.13%2C 23.1%25 identity in 216 aa overlap (active site is conserved). No Hp match%3B~Updated (2006) note: Pfam domain PF01323 DSBA-like thioredoxin domain identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score identified yet. Putative kept within product function. Functional classification -Protein translation and modification%3B~PMID:8494885;gbkey=CDS;gene=dsbA;inference=protein motif:Pfam:PF01323;locus_tag=Cj0872;product=putative protein disulphide isomerase;protein_id=CAL34995.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	813786	814295	.	+	.	ID=id-Cj0872;Note=HMMPfam hit to PF01323%2C DSBA-like thioredoxin domain%2C score 1.1e-05;gbkey=misc_feature;gene=dsbA;inference=protein motif:Pfam:PF01323;locus_tag=Cj0872
gi|15791399|ref|NC_002163.1|	EMBL	terminator	814319	814352	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:814319..814352;Note=15 bp stem-loop%3B possible termination of replication?;gbkey=regulatory;regulatory_class=terminator
gi|15791399|ref|NC_002163.1|	EMBL	gene	814351	814563	.	-	.	ID=gene-Cj0873c;Name=Cj0873c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0873c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	814351	814563	.	-	0	ID=cds-CAL34996.1;Parent=gene-Cj0873c;Dbxref=EnsemblGenomes-Gn:Cj0873c,EnsemblGenomes-Tr:CAL34996,UniProtKB/TrEMBL:Q0PA23,NCBI_GP:CAL34996.1;Name=CAL34996.1;Note=Original (2000) note: Cj0873c%2C unknown%2C len: 70 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0873c;product=hypothetical protein Cj0873c;protein_id=CAL34996.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	814539	815099	.	-	.	ID=gene-Cj0874c;Name=Cj0874c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0874c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	814539	815099	.	-	0	ID=cds-CAL34997.1;Parent=gene-Cj0874c;Dbxref=EnsemblGenomes-Gn:Cj0874c,EnsemblGenomes-Tr:CAL34997,GOA:Q0PA22,InterPro:IPR003088,InterPro:IPR009056,UniProtKB/TrEMBL:Q0PA22,NCBI_GP:CAL34997.1;Name=CAL34997.1;Note=Original (2000) note: Cj0874c%2C possible cytochrome C%2C len: 186 aa%3B very weak similarity to many cytochrome C proteins e.g. CYC_APIME cytochrome C (107 aa)%2C fasta scores%3B opt: 106 z-score: 137.1 E(): 2.5%2C 36.5%25 identity in 52 aa overlap. No Hp match. Contains 2x PS00190 Cytochrome c family heme-binding site signature. Also some similarity to Cj0037c possible cytochrome C (36.0%25 identity in 178 aa overlap)%3B~Updated (2006) note: No specific characterisation in related bacteria with acceptable identity score. Appropriate motifs present. Putative added to product function. Functional classification - Energy metabolism -Electron transport;gbkey=CDS;inference=protein motif:Prosite:PS00190;locus_tag=Cj0874c;product=putative cytochrome C;protein_id=CAL34997.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	814701	814718	.	-	.	ID=id-Cj0874c;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0874c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	815025	815042	.	-	.	ID=id-Cj0874c-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0874c
gi|15791399|ref|NC_002163.1|	EMBL	gene	815050	815337	.	-	.	ID=gene-Cj0876c;Name=Cj0876c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0876c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	815050	815337	.	-	0	ID=cds-CAL34998.1;Parent=gene-Cj0876c;Dbxref=EnsemblGenomes-Gn:Cj0876c,EnsemblGenomes-Tr:CAL34998,UniProtKB/TrEMBL:Q0PA21,NCBI_GP:CAL34998.1;Name=CAL34998.1;Note=Original (2000) note: Cj0876c%2C probable periplasmic protein%2C len: 96 aa%3B no Hp match. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0876c;product=putative periplasmic protein;protein_id=CAL34998.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	815432	815524	.	-	.	ID=gene-Cj0877c;Name=Cj0877c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0877c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	815432	815524	.	-	0	ID=cds-CAL34999.1;Parent=gene-Cj0877c;Dbxref=EnsemblGenomes-Gn:Cj0877c,EnsemblGenomes-Tr:CAL34999,UniProtKB/TrEMBL:Q0PA20,NCBI_GP:CAL34999.1;Name=CAL34999.1;Note=Original (2000) note: Cj0877c%2C questionable ORF%2Clen: 30 aa%3B no Hp match. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0877c;product=very hypothetical protein Cj0877c;protein_id=CAL34999.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	815545	815691	.	+	.	ID=gene-Cj0878;Name=Cj0878;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0878
gi|15791399|ref|NC_002163.1|	EMBL	CDS	815545	815691	.	+	0	ID=cds-CAL35000.1;Parent=gene-Cj0878;Dbxref=EnsemblGenomes-Gn:Cj0878,EnsemblGenomes-Tr:CAL35000,UniProtKB/TrEMBL:Q0PA19,NCBI_GP:CAL35000.1;Name=CAL35000.1;Note=Original (2000) note: Cj0878%2C unknown%2C len: 48 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0878;product=hypothetical protein Cj0878;protein_id=CAL35000.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	815669	816301	.	-	.	ID=gene-Cj0879c;Name=Cj0879c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0879c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	815669	816301	.	-	0	ID=cds-CAL35001.1;Parent=gene-Cj0879c;Dbxref=EnsemblGenomes-Gn:Cj0879c,EnsemblGenomes-Tr:CAL35001,UniProtKB/TrEMBL:Q0PA18,NCBI_GP:CAL35001.1;Name=CAL35001.1;Note=Original (2000) note: Cj0879c%2C probable periplasmic protein%2C len: 210 aa%3B no Hp match. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0879c;product=putative periplasmic protein;protein_id=CAL35001.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	816298	816540	.	-	.	ID=gene-Cj0880c;Name=Cj0880c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0880c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	816298	816540	.	-	0	ID=cds-CAL35002.1;Parent=gene-Cj0880c;Dbxref=EnsemblGenomes-Gn:Cj0880c,EnsemblGenomes-Tr:CAL35002,UniProtKB/TrEMBL:Q0PA17,NCBI_GP:CAL35002.1;Name=CAL35002.1;Note=Original (2000) note: Cj0880c%2C unknown%2C len: 240 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0880c;product=hypothetical protein Cj0880c;protein_id=CAL35002.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	816524	817570	.	-	.	ID=gene-Cj0881c;Name=Cj0881c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0881c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	816524	817570	.	-	0	ID=cds-CAL35003.1;Parent=gene-Cj0881c;Dbxref=EnsemblGenomes-Gn:Cj0881c,EnsemblGenomes-Tr:CAL35003,InterPro:IPR001667,UniProtKB/TrEMBL:Q0PA16,NCBI_GP:CAL35003.1;Name=CAL35003.1;Note=Original (2000) note: Cj0881c%2C unknown%2C len: 348 aa%3B 40.6%25 identity to HP1042. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0881c;product=hypothetical protein Cj0881c;protein_id=CAL35003.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	817579	819753	.	-	.	ID=gene-Cj0882c;Name=flhA;gbkey=Gene;gene=flhA;gene_biotype=protein_coding;locus_tag=Cj0882c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	817579	819753	.	-	0	ID=cds-CAL35004.1;Parent=gene-Cj0882c;Dbxref=EnsemblGenomes-Gn:Cj0882c,EnsemblGenomes-Tr:CAL35004,GOA:Q0PA15,InterPro:IPR001712,InterPro:IPR006301,UniProtKB/TrEMBL:Q0PA15,NCBI_GP:CAL35004.1;Name=CAL35004.1;Note=Original (2000) note: Cj0882c%2C flhA%2C probable flagellar biosynthesis protein%2C len: 724 aa%3B similar to e.g. FLHA_ECOLI flagellar biosynthesis protein FLHA (692 aa)%2C fasta scores%3B opt: 1065 z-score: 1153.9 E(): 0%2C39.6%25 identity in 694 aa overlap. 51.1%25 identity to HP1041. Contains Pfam match to entry PF00771 FHIPEP%2CFHIPEP family%3B~Updated (2006) note: Seven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within more than one genus with acceptable identity scores. Putative not added to product function. Functional classification - Surface structures%3B~PMID:8002587%2C PMID:16332888%2C PMID:8063102;gbkey=CDS;gene=flhA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0882c;product=flagellar biosynthesis protein;protein_id=CAL35004.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	818794	818862	.	-	.	ID=id-Cj0882c;Note=7 probable transmembrane helices predicted for Cj0882c by TMHMM2.0 at aa 21-43%2C 48-70%2C 82-102%2C 122-144%2C214-236%2C 251-273 and 298-320;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0882c;part=1/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	818935	819003	.	-	.	ID=id-Cj0882c;Note=7 probable transmembrane helices predicted for Cj0882c by TMHMM2.0 at aa 21-43%2C 48-70%2C 82-102%2C 122-144%2C214-236%2C 251-273 and 298-320;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0882c;part=2/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	819046	819114	.	-	.	ID=id-Cj0882c;Note=7 probable transmembrane helices predicted for Cj0882c by TMHMM2.0 at aa 21-43%2C 48-70%2C 82-102%2C 122-144%2C214-236%2C 251-273 and 298-320;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0882c;part=3/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	819322	819390	.	-	.	ID=id-Cj0882c;Note=7 probable transmembrane helices predicted for Cj0882c by TMHMM2.0 at aa 21-43%2C 48-70%2C 82-102%2C 122-144%2C214-236%2C 251-273 and 298-320;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0882c;part=4/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	819448	819510	.	-	.	ID=id-Cj0882c;Note=7 probable transmembrane helices predicted for Cj0882c by TMHMM2.0 at aa 21-43%2C 48-70%2C 82-102%2C 122-144%2C214-236%2C 251-273 and 298-320;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0882c;part=5/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	819544	819612	.	-	.	ID=id-Cj0882c;Note=7 probable transmembrane helices predicted for Cj0882c by TMHMM2.0 at aa 21-43%2C 48-70%2C 82-102%2C 122-144%2C214-236%2C 251-273 and 298-320;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0882c;part=6/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	819625	819693	.	-	.	ID=id-Cj0882c;Note=7 probable transmembrane helices predicted for Cj0882c by TMHMM2.0 at aa 21-43%2C 48-70%2C 82-102%2C 122-144%2C214-236%2C 251-273 and 298-320;gbkey=misc_feature;gene=flhA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0882c;part=7/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	817612	819651	.	-	.	ID=id-Cj0882c-2;Note=HMMPfam hit to PF00771%2C FHIPEP family%2C score 4.4e-295;gbkey=misc_feature;gene=flhA;inference=protein motif:Pfam:PF00771;locus_tag=Cj0882c
gi|15791399|ref|NC_002163.1|	EMBL	gene	819740	820150	.	-	.	ID=gene-Cj0883c;Name=Cj0883c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0883c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	819740	820150	.	-	0	ID=cds-CAL35005.1;Parent=gene-Cj0883c;Dbxref=EnsemblGenomes-Gn:Cj0883c,EnsemblGenomes-Tr:CAL35005,InterPro:IPR000944,InterPro:IPR011991,UniProtKB/TrEMBL:Q0PA14,NCBI_GP:CAL35005.1;Name=CAL35005.1;Note=Original (2000) note: Cj0883c%2C unknown%2C len: 136 aa%3B identical to TR:Q46090 (EMBL:U06951) Campylobacter jejuni 81-176 ORF3 in region upstream of the flhA gene. (136 aa)%2C and similar to hypothetical proteins e.g. Y379_HAEIN (150 aa)%2C fasta scores%3B opt: 174 z-score: 226.5 E(): 2.6e-05%2C 28.3%25 identity in 138 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02082 Transcriptional regulator identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation carried out yet%2C so putative kept in product function. Literature search identified papers giving further clues to product function. Functional classification - Broad regulatory functions%3B~PMID:8063102%2C PMID:15066034%2C PMID:14985343;gbkey=CDS;inference=protein motif:Pfam:PF02082;locus_tag=Cj0883c;product=putative transcriptional regulator;protein_id=CAL35005.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	819788	820150	.	-	.	ID=id-Cj0883c;Note=HMMPfam hit to PF02082%2C Transcriptional regulator%2Cscore 3e-31;gbkey=misc_feature;inference=protein motif:Pfam:PF02082;locus_tag=Cj0883c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	819956	820012	.	-	.	ID=id-Cj0883c-2;Note=PS01332 Uncharacterized protein family UPF0074 signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01332;locus_tag=Cj0883c
gi|15791399|ref|NC_002163.1|	EMBL	gene	820325	820597	.	+	.	ID=gene-Cj0884;Name=rpsO;gbkey=Gene;gene=rpsO;gene_biotype=protein_coding;locus_tag=Cj0884
gi|15791399|ref|NC_002163.1|	EMBL	CDS	820325	820597	.	+	0	ID=cds-CAL35006.1;Parent=gene-Cj0884;Dbxref=EnsemblGenomes-Gn:Cj0884,EnsemblGenomes-Tr:CAL35006,GOA:Q0PA13,InterPro:IPR000589,InterPro:IPR005290,InterPro:IPR009068,PDB:4IYL,NCBI_GP:CAL35006.1;Name=CAL35006.1;Note=Original (2000) note: Cj0884%2C rpsO%2C 30S ribosomal protein S15%2C len: 90 aa%3B almost iedentical to RS15_CAMJE 30S ribosomal protein S15 (90 aa)%2C and highly similar to many e.g. RS15_ECOLI (88 aa)%2C fasta scores%3B opt: 286 z-score: 385.5 E(): 3.6e-14%2C 54.0%25 identity in 87 aa overlap. 58.9%25 identity to HP1040. Contains PS00362 Ribosomal protein S15 signature and Pfam match to entry PF00312 S15%2C Ribosomal protein S15%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:8063102;gbkey=CDS;gene=rpsO;inference=protein motif:Prosite:PS00362;locus_tag=Cj0884;product=30S ribosomal protein S15;protein_id=CAL35006.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	820340	820588	.	+	.	ID=id-Cj0884;Note=HMMPfam hit to PF00312%2C Ribosomal protein S15%2Cscore 2.4e-33;gbkey=misc_feature;gene=rpsO;inference=protein motif:Pfam:PF00312;locus_tag=Cj0884
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	820439	820531	.	+	.	ID=id-Cj0884-2;Note=PS00362 Ribosomal protein S15 signature;gbkey=misc_feature;gene=rpsO;inference=protein motif:Prosite:PS00362;locus_tag=Cj0884
gi|15791399|ref|NC_002163.1|	EMBL	gene	820683	823523	.	-	.	ID=gene-Cj0886c;Name=ftsK;gbkey=Gene;gene=ftsK;gene_biotype=protein_coding;locus_tag=Cj0886c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	820683	823523	.	-	0	ID=cds-CAL35007.1;Parent=gene-Cj0886c;Dbxref=EnsemblGenomes-Gn:Cj0886c,EnsemblGenomes-Tr:CAL35007,GOA:Q0PA12,InterPro:IPR002543,InterPro:IPR018541,InterPro:IPR027417,NCBI_GP:CAL35007.1;Name=CAL35007.1;Note=Original (2000) note: Cj0886c%2C ftsK%2C probable cell division protein%2C len: 946 aa%3B 96.7%25 identity to YRO1_CAMJE (941 aa)%2C and similar to e.g. FTSK_ECOLI cell division protein FTSK (1329 aa)%2C fasta scores%3B opt: 803 z-score: 772.9 E(): 0%2C 45.2%25 identity in 522 aa overlap%2Cand SP3E_BACSU stage III sporulation protein E (787 aa)%2Cfasta scores%3B opt: 1488 z-score: 1436.1 E(): 0%2C 48.3%25 identity in 476 aa overlap. 52.0%25 identity to HP1090. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF01580 FtsK/SpoIIIE family identified within CDS. Further support given to product function. Three probable transmembrane helices predicted by TMHMM2.0. Similar to more than one annotated function in different genus. Putative kept within product function. Functional classification - Cell division%3B~PMID:8063102%2C PMID:11778051%2C PMID:7592387;gbkey=CDS;gene=ftsK;inference=protein motif:TMHMM:2.0;locus_tag=Cj0886c;product=putative cell division protein;protein_id=CAL35007.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	823203	823271	.	-	.	ID=id-Cj0886c;Note=3 probable transmembrane helices predicted for Cj0886c by TMHMM2.0 at aa 13-35%2C 50-72 and 85-107;gbkey=misc_feature;gene=ftsK;inference=protein motif:TMHMM:2.0;locus_tag=Cj0886c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	823308	823376	.	-	.	ID=id-Cj0886c;Note=3 probable transmembrane helices predicted for Cj0886c by TMHMM2.0 at aa 13-35%2C 50-72 and 85-107;gbkey=misc_feature;gene=ftsK;inference=protein motif:TMHMM:2.0;locus_tag=Cj0886c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	823419	823487	.	-	.	ID=id-Cj0886c;Note=3 probable transmembrane helices predicted for Cj0886c by TMHMM2.0 at aa 13-35%2C 50-72 and 85-107;gbkey=misc_feature;gene=ftsK;inference=protein motif:TMHMM:2.0;locus_tag=Cj0886c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	821172	821747	.	-	.	ID=id-Cj0886c-2;Note=HMMPfam hit to PF01580%2C FtsK/SpoIIIE family%2C score 8.5e-94;gbkey=misc_feature;gene=ftsK;inference=protein motif:Pfam:PF01580;locus_tag=Cj0886c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	821592	821615	.	-	.	ID=id-Cj0886c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ftsK;inference=protein motif:Prosite:PS00017;locus_tag=Cj0886c
gi|15791399|ref|NC_002163.1|	EMBL	gene	823633	825885	.	-	.	ID=gene-Cj0887c;Name=flaD;gbkey=Gene;gene=flaD;gene_biotype=protein_coding;locus_tag=Cj0887c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	823633	825885	.	-	0	ID=cds-CAL35008.1;Parent=gene-Cj0887c;Dbxref=EnsemblGenomes-Gn:Cj0887c,EnsemblGenomes-Tr:CAL35008,GOA:Q0PA11,InterPro:IPR001029,UniProtKB/TrEMBL:Q0PA11,NCBI_GP:CAL35008.1;Name=CAL35008.1;Note=Original (2000) note: Cj0887c%2C flaD possible flagellin%2C len: 750 aa%3B similar to e.g. FLAB_HELMU flagellin B (513 aa)%2C fasta scores%3B opt: 251 z-score: 251.7 E(): 1e-06%2C 22.2%25 identity in 535 aa overlap. 29.7%25 identity to HP0295. Also similar to Cj1338c flaA (21.0%25 identity in 563 aa overlap) and Cj1339c flaB (20.2%25 identity in 560 aa overlap)%3B~Updated (2006) note: Pfam domain PF00669 Bacterial flagellin N-terminus identified within CDS. Further support given to product function. No specific characterisation work with acceptable identity score carried out yet. Putative kept within product function. Functional classification - Surface structures%3B~PMID:8932324%2C PMID:2121898;gbkey=CDS;gene=flaD;inference=protein motif:Pfam:PF00669;locus_tag=Cj0887c;product=putative flagellin;protein_id=CAL35008.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	825397	825807	.	-	.	ID=id-Cj0887c;Note=HMMPfam hit to PF00669%2C Bacterial flagellin N-terminus%2C score 1.8e-05;gbkey=misc_feature;gene=flaD;inference=protein motif:Pfam:PF00669;locus_tag=Cj0887c
gi|15791399|ref|NC_002163.1|	EMBL	gene	826066	826152	.	+	.	ID=gene-tRNA-Leu;Name=tRNA-Leu;gbkey=Gene;gene=tRNA-Leu;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	826066	826152	.	+	.	ID=rna-tRNA-Leu;Parent=gene-tRNA-Leu;Note=tRNA Leu anticodon CAA%2C Cove score 75.00;gbkey=tRNA;gene=tRNA-Leu;product=tRNA-Leu
gi|15791399|ref|NC_002163.1|	EMBL	exon	826066	826152	.	+	.	ID=exon-tRNA-Leu-1;Parent=rna-tRNA-Leu;Note=tRNA Leu anticodon CAA%2C Cove score 75.00;gbkey=tRNA;gene=tRNA-Leu;product=tRNA-Leu
gi|15791399|ref|NC_002163.1|	EMBL	gene	826163	826237	.	+	.	ID=gene-tRNA-Gly-2;Name=tRNA-Gly;gbkey=Gene;gene=tRNA-Gly;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	826163	826237	.	+	.	ID=rna-tRNA-Gly-2;Parent=gene-tRNA-Gly-2;Note=tRNA Gly anticodon GCC%2C Cove score 88.10;gbkey=tRNA;gene=tRNA-Gly;product=tRNA-Gly
gi|15791399|ref|NC_002163.1|	EMBL	exon	826163	826237	.	+	.	ID=exon-tRNA-Gly-2-1;Parent=rna-tRNA-Gly-2;Note=tRNA Gly anticodon GCC%2C Cove score 88.10;gbkey=tRNA;gene=tRNA-Gly;product=tRNA-Gly
gi|15791399|ref|NC_002163.1|	EMBL	gene	826268	828199	.	-	.	ID=gene-Cj0888c;Name=Cj0888c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0888c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	826268	828199	.	-	0	ID=cds-CAL35009.1;Parent=gene-Cj0888c;Dbxref=EnsemblGenomes-Gn:Cj0888c,EnsemblGenomes-Tr:CAL35009,GOA:Q0PA10,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0PA10,NCBI_GP:CAL35009.1;Name=CAL35009.1;Note=Original (2000) note: Cj0888c%2C ABC transport system ATP-binding protein%2C len: 643 aa%3B similar to UUP_ECOLI ABC transporter atp-binding protein UUP (635 aa)%2C fasta scores%3B opt: 744 z-score: 763.9 E(): 0%2C 37.1%25 identity in 634 aa overlap. No Hp ortholog. Contains 2x PS00017 ATP/GTP-binding site motif A (P-loop)%2C 2x PS00211 ABC transporters family signature%2C and 2x Pfam match to entry PF00005 ABC_tran%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Transport/binding proteins - Other%3B~PMID:9139905;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj0888c;product=ABC transport system ATP-binding protein;protein_id=CAL35009.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	826625	827131	.	-	.	ID=id-Cj0888c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 2.1e-45;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj0888c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	826799	826843	.	-	.	ID=id-Cj0888c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj0888c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	827087	827110	.	-	.	ID=id-Cj0888c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0888c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	827504	828115	.	-	.	ID=id-Cj0888c-4;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 7.2e-43;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj0888c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	827678	827722	.	-	.	ID=id-Cj0888c-5;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj0888c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	828071	828094	.	-	.	ID=id-Cj0888c-6;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0888c
gi|15791399|ref|NC_002163.1|	EMBL	gene	828203	829492	.	-	.	ID=gene-Cj0889c;Name=Cj0889c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0889c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	828203	829492	.	-	0	ID=cds-CAL35010.1;Parent=gene-Cj0889c;Dbxref=EnsemblGenomes-Gn:Cj0889c,EnsemblGenomes-Tr:CAL35010,GOA:Q0PA09,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q0PA09,NCBI_GP:CAL35010.1;Name=CAL35010.1;Note=Original (2000) note: Cj0889c%2C probable sensory transduction histidine kinase%2C len: 429 aa%3B similar in C-terminus to many e.g. ENVZ_ECOLI osmolarity sensor protein ENVZ (450 aa)%2C fasta scores%3B opt: 210 z-score: 229.3 E(): 1.8e-05. 26.5%25 identity in 204 aa overlap No Hp ortholog. Contains two probable transmembrane domains in N-terminus and Pfam match to entry PF00512 signal%2C Signal carboxyl-terminal domain%3B~Updated (2006) note: Pfam domain PF02518 Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase identified within CDS. Further support given to product function. Some characterisation in Bacillus subtilitis%2C however%2Cidentity score not acceptable. Putative kept in product function. Functional classification - Signal transduction%3B~PMID:8002614%2C PMID:14612242%2C PMID:12890034;gbkey=CDS;inference=protein motif:Pfam:PF02518;locus_tag=Cj0889c;product=putative sensory trasnduction histidine kinase;protein_id=CAL35010.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	829025	829093	.	-	.	ID=id-Cj0889c;Note=2 probable transmembrane helices predicted for Cj0889c by TMHMM2.0 at aa 7-26 and 134-156;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0889c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	829415	829474	.	-	.	ID=id-Cj0889c;Note=2 probable transmembrane helices predicted for Cj0889c by TMHMM2.0 at aa 7-26 and 134-156;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0889c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	828206	828514	.	-	.	ID=id-Cj0889c-2;Note=HMMPfam hit to PF02518%2C Histidine kinase-%2C DNA gyrase B-%2C and HSP90%2C score 1.5e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF02518;locus_tag=Cj0889c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	828620	828823	.	-	.	ID=id-Cj0889c-3;Note=HMMPfam hit to PF00512%2C His Kinase A (phosphoacceptor) domain%2C score 1.3e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00512;locus_tag=Cj0889c
gi|15791399|ref|NC_002163.1|	EMBL	gene	829486	830148	.	-	.	ID=gene-Cj0890c;Name=Cj0890c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0890c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	829486	830148	.	-	0	ID=cds-CAL35011.1;Parent=gene-Cj0890c;Dbxref=EnsemblGenomes-Gn:Cj0890c,EnsemblGenomes-Tr:CAL35011,GOA:Q0PA08,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q0PA08,NCBI_GP:CAL35011.1;Name=CAL35011.1;Note=Original (2000) note: Cj0890c%2C probable sensory transduction transcriptional regulator%2C len: 220 aa%3B similar to many e.g. PHOB_SHIFL phosphate regulon transcriptional regulator (229 aa)%2C fasta scores%3B opt: 396 z-score: 471.5 E(): 5.8e-19%2C 29.3%25 identity in 222 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain and Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%3B~Updated (2006) note: Characterisation within more than one genus%2C however%2C identity scores were marginal. Putative kept within product function. Functional classification - Signal transduction%3B~PMID:9141682;gbkey=CDS;inference=protein motif:Pfam:PF00486;locus_tag=Cj0890c;product=putative sensory transduction transcriptional regulator;protein_id=CAL35011.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	829492	829710	.	-	.	ID=id-Cj0890c;Note=HMMPfam hit to PF00486%2C Transcriptional regulatory protein%2C C te%2C score 3.4e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF00486;locus_tag=Cj0890c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	829780	830139	.	-	.	ID=id-Cj0890c-2;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 5.5e-25;gbkey=misc_feature;inference=protein motif:Pfam:PF00072;locus_tag=Cj0890c
gi|15791399|ref|NC_002163.1|	EMBL	gene	830135	831718	.	-	.	ID=gene-Cj0891c;Name=serA;gbkey=Gene;gene=serA;gene_biotype=protein_coding;locus_tag=Cj0891c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	830135	831718	.	-	0	ID=cds-CAL35012.1;Parent=gene-Cj0891c;Dbxref=EnsemblGenomes-Gn:Cj0891c,EnsemblGenomes-Tr:CAL35012,GOA:Q0PA07,InterPro:IPR002912,InterPro:IPR006139,InterPro:IPR006140,InterPro:IPR006236,InterPro:IPR016040,InterPro:IPR029009,InterPro:IPR029752,InterPro:IPR029753,UniProtKB/TrEMBL:Q0PA07,NCBI_GP:CAL35012.1;Name=CAL35012.1;Note=Original (2000) note: Cj0891c%2C serA%2C probable D-3-phosphoglycerate dehydrogenase%2C len: 527 aa%3B similar to e.g. SERA_BACSU D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) (525 aa)%2C fasta scores%3B opt: 1151 z-score: 1318.2 E(): 0%2C 36.4%25 identity in 528 aa overlap. 50.7%25 identity to HP0397. Also similar to Cj0373 (30.1%25 identity in 309 aa overlap). Contains PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature%2C S00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2%2C and Pfam match to entry PF00389 2-Hacid_DH%2C D-isomer specific 2-hydroxyacid dehydrogenases%3B~Updated (2006) note: Characterised in Escerichia coli and Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification - Amino acid biosynthesis - Serine family%3B~PMID:3017965;gbkey=CDS;gene=serA;inference=protein motif:Prosite:PS00065;locus_tag=Cj0891c;product=D-3-phosphoglycerate dehydrogenase;protein_id=CAL35012.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	830144	830356	.	-	.	ID=id-Cj0891c;Note=HMMPfam hit to PF01842%2C ACT domain%2C score 1.1e-11;gbkey=misc_feature;gene=serA;inference=protein motif:Pfam:PF01842;locus_tag=Cj0891c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	830873	831412	.	-	.	ID=id-Cj0891c-2;Note=HMMPfam hit to PF02826%2C D-isomer specific 2-hydroxyacid dehydrog%2C score 5.9e-52;gbkey=misc_feature;gene=serA;inference=protein motif:Pfam:PF02826;locus_tag=Cj0891c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	831068	831136	.	-	.	ID=id-Cj0891c-3;Note=PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2;gbkey=misc_feature;gene=serA;inference=protein motif:Prosite:PS00670;locus_tag=Cj0891c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	831200	831283	.	-	.	ID=id-Cj0891c-4;Note=PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature;gbkey=misc_feature;gene=serA;inference=protein motif:Prosite:PS00065;locus_tag=Cj0891c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	831428	831712	.	-	.	ID=id-Cj0891c-5;Note=HMMPfam hit to PF00389%2C D-isomer specific 2-hydroxyacid dehydrog%2C score 2.1e-20;gbkey=misc_feature;gene=serA;inference=protein motif:Pfam:PF00389;locus_tag=Cj0891c
gi|15791399|ref|NC_002163.1|	EMBL	gene	831715	832203	.	-	.	ID=gene-Cj0892c;Name=Cj0892c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0892c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	831715	832203	.	-	0	ID=cds-CAL35013.1;Parent=gene-Cj0892c;Dbxref=EnsemblGenomes-Gn:Cj0892c,EnsemblGenomes-Tr:CAL35013,UniProtKB/TrEMBL:Q0PA06,NCBI_GP:CAL35013.1;Name=CAL35013.1;Note=Original (2000) note: Cj0892c%2C probable periplasmic protein%2C len: 162 aa%3B no Hp match. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0892c;product=putative periplasmic protein;protein_id=CAL35013.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	832126	832185	.	-	.	ID=id-Cj0892c;Note=1 probable transmembrane helix predicted for Cj0892c by TMHMM2.0 at aa 7-26;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0892c
gi|15791399|ref|NC_002163.1|	EMBL	gene	832203	833873	.	-	.	ID=gene-Cj0893c;Name=rpsA;gbkey=Gene;gene=rpsA;gene_biotype=protein_coding;locus_tag=Cj0893c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	832203	833873	.	-	0	ID=cds-CAL35014.1;Parent=gene-Cj0893c;Dbxref=EnsemblGenomes-Gn:Cj0893c,EnsemblGenomes-Tr:CAL35014,GOA:Q0PA05,InterPro:IPR000110,InterPro:IPR003029,InterPro:IPR012340,InterPro:IPR022967,UniProtKB/TrEMBL:Q0PA05,NCBI_GP:CAL35014.1;Name=CAL35014.1;Note=Original (2000) note: Cj0893c%2C rpsA%2C probable 30S ribosomal protein S1%2C len: 556 aa%3B similar to many e.g. RS1_ECOLI 30S ribosomal protein S1 (557 aa)%2C fasta scores%3B opt: 1053 z-score: 1148.3 E(): 0%2C 33.4%25 identity in 548 aa overlap. 47.0%25 identity to HP0399. Contains 6x Pfam match to entry PF00575 S1%2C S1 RNA binding domain%3B~Updated (2006) note: Characterised in Escherichia coli with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:6267426;gbkey=CDS;gene=rpsA;inference=protein motif:Pfam:PF00575;locus_tag=Cj0893c;product=30S ribosomal protein S1;protein_id=CAL35014.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	832299	832508	.	-	.	ID=id-Cj0893c;Note=HMMPfam hit to PF00575%2C S1 RNA binding domain%2Cscore 4.8e-15;gbkey=misc_feature;gene=rpsA;inference=protein motif:Pfam:PF00575;locus_tag=Cj0893c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	832545	832763	.	-	.	ID=id-Cj0893c-2;Note=HMMPfam hit to PF00575%2C S1 RNA binding domain%2Cscore 3.1e-25;gbkey=misc_feature;gene=rpsA;inference=protein motif:Pfam:PF00575;locus_tag=Cj0893c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	832800	833024	.	-	.	ID=id-Cj0893c-3;Note=HMMPfam hit to PF00575%2C S1 RNA binding domain%2Cscore 1.9e-27;gbkey=misc_feature;gene=rpsA;inference=protein motif:Pfam:PF00575;locus_tag=Cj0893c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	833061	833279	.	-	.	ID=id-Cj0893c-4;Note=HMMPfam hit to PF00575%2C S1 RNA binding domain%2Cscore 5.7e-22;gbkey=misc_feature;gene=rpsA;inference=protein motif:Pfam:PF00575;locus_tag=Cj0893c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	833328	833534	.	-	.	ID=id-Cj0893c-5;Note=HMMPfam hit to PF00575%2C S1 RNA binding domain%2Cscore 1.8e-06;gbkey=misc_feature;gene=rpsA;inference=protein motif:Pfam:PF00575;locus_tag=Cj0893c
gi|15791399|ref|NC_002163.1|	EMBL	gene	834005	834838	.	-	.	ID=gene-Cj0894c;Name=ispH;gbkey=Gene;gene=ispH;gene_biotype=protein_coding;locus_tag=Cj0894c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	834005	834838	.	-	0	ID=cds-CAL35015.1;Parent=gene-Cj0894c;Dbxref=EnsemblGenomes-Gn:Cj0894c,EnsemblGenomes-Tr:CAL35015,GOA:P0C632,InterPro:IPR003451,NCBI_GP:CAL35015.1;Name=CAL35015.1;Note=Original (2000) note: Cj0894c%2C lytB%2C homolog of E. coli lytB involved in in penicillin tolerance and control of the stringent response%2C len: 277 aa%3B 98.9%25 identical to TRP94644 (EMBL:X89371) C. jejuni lytB (277 aa)%2C and similar to e.g. LYTB_ECOLI LYTB protein (316 aa)%2C fasta scores%3B opt: 418 z-score: 486.6 E(): 8.3e-20%2C 29.2%25 identity in 288 aa overlap. 59.1%25 identity HP0400%3B~Updated (2006) note: Pfam domain PF02401 LytB protein identified within CDS. Now fully characterised in Escherichia coli and Campylobacter jejuni with marginal identity scores. Appropriate motifs were identified. Product function updated along with gene name and EC number. Putative not added to product function. Functional classification - Misc%3B~PMID:11818558%2C PMID:11418107%2C PMID:9418246%2CPMID:15469281;gbkey=CDS;gene=ispH;inference=protein motif:Pfam:PF02401;locus_tag=Cj0894c;product=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;protein_id=CAL35015.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	834017	834832	.	-	.	ID=id-Cj0894c;Note=HMMPfam hit to PF02401%2C LytB protein%2C score 2.5e-160;gbkey=misc_feature;gene=ispH;inference=protein motif:Pfam:PF02401;locus_tag=Cj0894c
gi|15791399|ref|NC_002163.1|	EMBL	gene	834828	836114	.	-	.	ID=gene-Cj0895c;Name=aroA;gbkey=Gene;gene=aroA;gene_biotype=protein_coding;locus_tag=Cj0895c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	834828	836114	.	-	0	ID=cds-CAL35016.1;Parent=gene-Cj0895c;Dbxref=EnsemblGenomes-Gn:Cj0895c,EnsemblGenomes-Tr:CAL35016,GOA:P0C630,InterPro:IPR001986,InterPro:IPR006264,InterPro:IPR013792,InterPro:IPR023193,NCBI_GP:CAL35016.1;Name=CAL35016.1;Note=Original (2000) note: Cj0895c%2C aroA%2C3-phosphoshikimate 1-carboxyvinyltransferase%2C len: 428 aa%3B 98.6%25 identical to AROA_CAMJE 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) (428 aa)%2C and similar to many e.g. AROA_BACSU (428 aa)%2C fasta scores%3B opt: 932 z-score: 1099.9 E(): 0%2C 38.3%25 identity in 433 aa overlap. 52.0%25 identity to HP0401. Contains PS00104 EPSP synthase signature 1 and Pfam match to entry PF00275 EPSP_syntase%2C EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)%3B~Updated (2006) note: Characterised in Campylobacter jejuni%2C so putative not added to product function. Functional classification - Amino acid biosynthesis -Aromatic amino acid family%3B~PMID:8973316;gbkey=CDS;gene=aroA;inference=protein motif:Prosite:PS00104;locus_tag=Cj0895c;product=3-phosphoshikimate 1-carboxyvinyltransferase;protein_id=CAL35016.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	834858	836099	.	-	.	ID=id-Cj0895c;Note=HMMPfam hit to PF00275%2C EPSP synthase (3-phosphoshikimate 1-car%2C score 2.1e-163;gbkey=misc_feature;gene=aroA;inference=protein motif:Pfam:PF00275;locus_tag=Cj0895c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	835818	835862	.	-	.	ID=id-Cj0895c-2;Note=PS00104 EPSP synthase signature 1;gbkey=misc_feature;gene=aroA;inference=protein motif:Prosite:PS00104;locus_tag=Cj0895c
gi|15791399|ref|NC_002163.1|	EMBL	gene	836111	838432	.	-	.	ID=gene-Cj0896c;Name=pheT;gbkey=Gene;gene=pheT;gene_biotype=protein_coding;locus_tag=Cj0896c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	836111	838432	.	-	0	ID=cds-CAL35017.1;Parent=gene-Cj0896c;Dbxref=EnsemblGenomes-Gn:Cj0896c,EnsemblGenomes-Tr:CAL35017,GOA:Q9PP35,InterPro:IPR002547,InterPro:IPR003583,InterPro:IPR004532,InterPro:IPR005121,InterPro:IPR005146,InterPro:IPR005147,InterPro:IPR009061,InterPro:IPR012340,InterPro:IPR020825,NCBI_GP:CAL35017.1;Name=CAL35017.1;Note=Original (2000) note: Cj0896c%2C pheT%2C probable phenylalanyl-tRNA synthetase beta chain%2C len: 773 aa%3B similar to many e.g. SYFB_ECOLI phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) (795 aa)%2C fasta scores%3B opt: 585 z-score: 663.2 E(): 1.2e-29%2C 27.8%25 identity in 802 aa overlap. 36.0%25 identity to HP0402%3B~Updated (2006) note: Pfam domains PF03484 tRNA synthetase B5 domain%2C PF03483 B3/4 domain and PF01588 Putative tRNA binding domain were identified within CDS. Further support given to product function. Characterised in Escherichia coli with marginal identity score. Appropriate motfis present. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:8973316%2C PMID:2991205;gbkey=CDS;gene=pheT;inference=protein motif:Pfam:PF03484;locus_tag=Cj0896c;product=phenylalanyl-tRNA synthetase beta chain;protein_id=CAL35017.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	836114	836389	.	-	.	ID=id-Cj0896c;Note=HMMPfam hit to PF03147%2C Ferredoxin-fold anticodon binding domain%2C score 4.8e-19;gbkey=misc_feature;gene=pheT;inference=protein motif:Pfam:PF03147;locus_tag=Cj0896c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	837047	837256	.	-	.	ID=id-Cj0896c-2;Note=HMMPfam hit to PF03484%2C tRNA synthetase B5 domain%2Cscore 2.7e-21;gbkey=misc_feature;gene=pheT;inference=protein motif:Pfam:PF03484;locus_tag=Cj0896c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	837302	837787	.	-	.	ID=id-Cj0896c-3;Note=HMMPfam hit to PF03483%2C B3/4 domain%2C score 5.4e-21;gbkey=misc_feature;gene=pheT;inference=protein motif:Pfam:PF03483;locus_tag=Cj0896c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	837989	838300	.	-	.	ID=id-Cj0896c-4;Note=HMMPfam hit to PF01588%2C Putative tRNA binding domain%2C score 2.9e-27;gbkey=misc_feature;gene=pheT;inference=protein motif:Pfam:PF01588;locus_tag=Cj0896c
gi|15791399|ref|NC_002163.1|	EMBL	gene	838429	839421	.	-	.	ID=gene-Cj0897c;Name=pheS;gbkey=Gene;gene=pheS;gene_biotype=protein_coding;locus_tag=Cj0897c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	838429	839421	.	-	0	ID=cds-CAL35018.1;Parent=gene-Cj0897c;Dbxref=EnsemblGenomes-Gn:Cj0897c,EnsemblGenomes-Tr:CAL35018,GOA:Q9PP34,InterPro:IPR002319,InterPro:IPR004188,InterPro:IPR004529,InterPro:IPR006195,InterPro:IPR010978,InterPro:IPR022911,NCBI_GP:CAL35018.1;Name=CAL35018.1;Note=Original (2000) note: Cj0897c%2C pheS%2C probable phenylalanyl-tRNA synthetase alpha chain%2C len: 330 aa%3B similar to many e.g. SYFA_ECOLI phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (327 aa)%2C fasta scores%3B opt: 854 z-score: 1005.3 E(): 0%2C 51.2%25 identity in 326 aa overlap. 58.1%25 identity to HP0403. Contains PS00179 and PS00339 Aminoacyl-transfer RNA synthetases class-II signatures 1 and 2%3B~Updated (2006) note: Pfam domains PF01409 tRNA synthetases class II core domain and PF02912 Aminoacyl tRNA synthetase class II%2C N-terminal domain were identified within CDS. Further support given to product function. Characterised in Bacillus subtilis and Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:6317865%2C PMID:1537809;gbkey=CDS;gene=pheS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0897c;product=phenylalanyl-tRNA synthetase alpha chain;protein_id=CAL35018.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	838474	839121	.	-	.	ID=id-Cj0897c;Note=HMMPfam hit to PF01409%2C tRNA synthetases class II core domain%2C score 7.2e-143;gbkey=misc_feature;gene=pheS;inference=protein motif:Pfam:PF01409;locus_tag=Cj0897c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	838498	838527	.	-	.	ID=id-Cj0897c-2;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=pheS;inference=protein motif:Prosite:PS00339;locus_tag=Cj0897c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	838813	838863	.	-	.	ID=id-Cj0897c-3;Note=PS00179 Aminoacyl-transfer RNA synthetases class-II signature 1;gbkey=misc_feature;gene=pheS;inference=protein motif:Prosite:PS00179;locus_tag=Cj0897c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	839179	839397	.	-	.	ID=id-Cj0897c-4;Note=HMMPfam hit to PF02912%2C Aminoacyl tRNA synthetase class II%2C N%2C score 2.5e-23;gbkey=misc_feature;gene=pheS;inference=protein motif:Pfam:PF02912;locus_tag=Cj0897c
gi|15791399|ref|NC_002163.1|	EMBL	gene	839544	839909	.	+	.	ID=gene-Cj0898;Name=Cj0898;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0898
gi|15791399|ref|NC_002163.1|	EMBL	CDS	839544	839909	.	+	0	ID=cds-CAL35019.1;Parent=gene-Cj0898;Dbxref=EnsemblGenomes-Gn:Cj0898,EnsemblGenomes-Tr:CAL35019,GOA:Q0PA00,InterPro:IPR001310,InterPro:IPR011146,InterPro:IPR019808,UniProtKB/TrEMBL:Q0PA00,NCBI_GP:CAL35019.1;Name=CAL35019.1;Note=Original (2000) note: Cj0898%2C HIT-family protein%2Clen: 121 aa%3B similar to many members of the HIT family e.g. IPK1_HUMAN HINT protein (protein kinase C inhibitor 1) (125 aa)%2C fasta scores%3B opt: 286 z-score: 385.9 E(): 3.4e-14%2C 40.6%25 identity in 106 aa overlap%2C and YCFF_ECOLI HYPOTHETICAL 13.2 KD PROTEIN HIT-LIKE PROTE (119 aa)%2Cfasta scores%3B opt: 276 z-score: 373.2 E(): 1.7e-13%2C 38.2%25 identity in 110 aa overlap. 56.6%25 identity to HP0404. Contains Pfam match to entry PF01230 HIT%2C HIT family%3B~Updated (2006) note: Specific characterisation has not been carried out%2C so putative kept in product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF01230;locus_tag=Cj0898;product=putative histidine triad (HIT) family protein;protein_id=CAL35019.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	839556	839864	.	+	.	ID=id-Cj0898;Note=HMMPfam hit to PF01230%2C HIT domain%2C score 3.2e-40;gbkey=misc_feature;inference=protein motif:Pfam:PF01230;locus_tag=Cj0898
gi|15791399|ref|NC_002163.1|	EMBL	gene	839939	840508	.	-	.	ID=gene-Cj0899c;Name=thiJ;gbkey=Gene;gene=thiJ;gene_biotype=protein_coding;locus_tag=Cj0899c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	839939	840508	.	-	0	ID=cds-CAL35020.1;Parent=gene-Cj0899c;Dbxref=EnsemblGenomes-Gn:Cj0899c,EnsemblGenomes-Tr:CAL35020,InterPro:IPR002818,InterPro:IPR006287,InterPro:IPR029062,UniProtKB/TrEMBL:Q0P9Z9,NCBI_GP:CAL35020.1;Name=CAL35020.1;Note=Original (2000) note: Cj0899c%2C thiJ%2C probable 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein%2C len: 189 aa%3B simlar to e.g. THIJ_ECOLI 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme (198 aa)%2C fasta scores%3B opt: 265 z-score: 330.3 E(): 4.2e-11%2C 32.6%25 identity in 181 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01965 DJ-1/PfpI family identified within CDS. Further support given to product function. Characterised in Escherichia coli with marginal identity score. Putative not added to protein function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Thiamine%3B~PMID:10075431;gbkey=CDS;gene=thiJ;inference=protein motif:Pfam:PF01965;locus_tag=Cj0899c;product=4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein;protein_id=CAL35020.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	839996	840403	.	-	.	ID=id-Cj0899c;Note=HMMPfam hit to PF01965%2C DJ-1/PfpI family%2C score 6.9e-32;gbkey=misc_feature;gene=thiJ;inference=protein motif:Pfam:PF01965;locus_tag=Cj0899c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	840434	840481	.	-	.	ID=id-Cj0899c-2;Note=PS00225 Crystallins beta and gamma 'Greek key' motif signature;gbkey=misc_feature;gene=thiJ;inference=protein motif:Prosite:PS00225;locus_tag=Cj0899c
gi|15791399|ref|NC_002163.1|	EMBL	gene	840501	840680	.	-	.	ID=gene-Cj0900c;Name=Cj0900c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0900c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	840501	840680	.	-	0	ID=cds-CAL35021.1;Parent=gene-Cj0900c;Dbxref=EnsemblGenomes-Gn:Cj0900c,EnsemblGenomes-Tr:CAL35021,UniProtKB/TrEMBL:Q0P9Z8,NCBI_GP:CAL35021.1;Name=CAL35021.1;Note=Original (2000) note: Cj0900c%2C small hydrophobic protein%2C len: 59 aa%3B 29.8%25 identity to HP0085. Functional classification - Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0900c;product=small hydrophobic protein;protein_id=CAL35021.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	840585	840653	.	-	.	ID=id-Cj0900c;Note=1 probable transmembrane helix predicted for Cj0900c by TMHMM2.0 at aa 10-32;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0900c
gi|15791399|ref|NC_002163.1|	EMBL	gene	840763	841506	.	+	.	ID=gene-Cj0901;Name=Cj0901;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0901
gi|15791399|ref|NC_002163.1|	EMBL	CDS	840763	841506	.	+	0	ID=cds-CAL35022.1;Parent=gene-Cj0901;Dbxref=EnsemblGenomes-Gn:Cj0901,EnsemblGenomes-Tr:CAL35022,GOA:Q0P9Z7,InterPro:IPR000515,InterPro:IPR001991,InterPro:IPR010065,UniProtKB/TrEMBL:Q0P9Z7,NCBI_GP:CAL35022.1;Name=CAL35022.1;Note=Original (2000) note: Cj0901%2C probable amino acid ABC tansporter permease protein%2C len: 247 aa%3B similar to many e.g. YQIY_BACSU probable amino-acid ABC transporter permease protein (219 aa)%2C fasta scores%3B opt: 552 z-score: 683.2 E(): 9.3e-31%2C 43.6%25 identity in 204 aa overlap. 28.6%25 identity to HP0939. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp signature%2C and Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Transport/binding proteins - Amino acids and amines;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0901;product=putative amino acid ABC tansporter permease protein;protein_id=CAL35022.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	840775	840843	.	+	.	ID=id-Cj0901;Note=4 probable transmembrane helices predicted for Cj0901 by TMHMM2.0 at aa 5-27%2C 54-76%2C 100-122 and 217-236;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0901;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	840922	840990	.	+	.	ID=id-Cj0901;Note=4 probable transmembrane helices predicted for Cj0901 by TMHMM2.0 at aa 5-27%2C 54-76%2C 100-122 and 217-236;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0901;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	841060	841128	.	+	.	ID=id-Cj0901;Note=4 probable transmembrane helices predicted for Cj0901 by TMHMM2.0 at aa 5-27%2C 54-76%2C 100-122 and 217-236;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0901;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	841411	841470	.	+	.	ID=id-Cj0901;Note=4 probable transmembrane helices predicted for Cj0901 by TMHMM2.0 at aa 5-27%2C 54-76%2C 100-122 and 217-236;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0901;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	840904	841497	.	+	.	ID=id-Cj0901-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 2.6e-34;gbkey=misc_feature;inference=protein motif:Pfam:PF00528;locus_tag=Cj0901
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	840913	840945	.	+	.	ID=id-Cj0901-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0901
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	841183	841269	.	+	.	ID=id-Cj0901-4;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign;gbkey=misc_feature;inference=protein motif:Prosite:PS00402;locus_tag=Cj0901
gi|15791399|ref|NC_002163.1|	EMBL	gene	841499	842227	.	+	.	ID=gene-Cj0902;Name=glnQ;gbkey=Gene;gene=glnQ;gene_biotype=protein_coding;locus_tag=Cj0902
gi|15791399|ref|NC_002163.1|	EMBL	CDS	841499	842227	.	+	0	ID=cds-CAL35023.1;Parent=gene-Cj0902;Dbxref=EnsemblGenomes-Gn:Cj0902,EnsemblGenomes-Tr:CAL35023,GOA:Q0P9Z6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9Z6,NCBI_GP:CAL35023.1;Name=CAL35023.1;Note=Original (2000) note: Cj0902%2C glnQ%2C probable glutamine transport ATP-binding protein%2C len: 247 aa%3B highly similar to e.g. GLNQ_BACST glutamine transport ATP-binding protein (242 aa)%2C fasta scores%3B opt: 940 z-score: 1074.4 E(): 0%2C 56.2%25 identity in 242 aa overlap. No Hp ortholog. Also similar to Cj0469 (52.9%25 identity in 238 aa overlap). Contains S00017 ATP/GTP-binding site motif A (P-loop)%2C S00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Characterised in Bacillus stearothermophilus with acceptable identity score. Putative kept within product function as not sure whether exact substrate is used in Campylobacter jejuni. Functional classification - Transport/binding proteins -Amino acids and amines%3B~PMID:1856180;gbkey=CDS;gene=glnQ;inference=protein motif:Pfam:PF00005;locus_tag=Cj0902;product=putative glutamine transport ATP-binding protein;protein_id=CAL35023.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	841577	842134	.	+	.	ID=id-Cj0902;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 2.6e-56;gbkey=misc_feature;gene=glnQ;inference=protein motif:Pfam:PF00005;locus_tag=Cj0902
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	841598	841621	.	+	.	ID=id-Cj0902-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=glnQ;inference=protein motif:Prosite:PS00017;locus_tag=Cj0902
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	841907	841951	.	+	.	ID=id-Cj0902-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=glnQ;inference=protein motif:Prosite:PS00211;locus_tag=Cj0902
gi|15791399|ref|NC_002163.1|	EMBL	gene	842255	843721	.	-	.	ID=gene-Cj0903c;Name=Cj0903c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0903c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	842255	843721	.	-	0	ID=cds-CAL35024.1;Parent=gene-Cj0903c;Dbxref=EnsemblGenomes-Gn:Cj0903c,EnsemblGenomes-Tr:CAL35024,GOA:Q0P9Z5,InterPro:IPR001463,UniProtKB/TrEMBL:Q0P9Z5,NCBI_GP:CAL35024.1;Name=CAL35024.1;Note=Original (2000) note: Cj0903c%2C probable amino-acid transport protein%2C len: 488 aa%3B simlar to many hypothetical membaer of the sodium:alanine symporter family e.g. ALST_BACSU amino acid carrier protein ALST (465 aa)%2C fasta scores%3B opt: 821 z-score: 946.6 E(): 0%2C41.9%25 identity in 473 aa overlap. 33.6%25 identity to HP0942. Contains PS00873 Sodium:alanine symporter family signature%2C and Pfam match to entry PF01235 Na_Ala_symp%2CSodium:alanine symporter family%3B~Updated (2006) note: Nine probable transmembrane helices predicted for TMHMM2.0. Further support given to product function. No specfic characterisation with acceptable identity score carried out yet. Putative kept within product function along with amino-acid designation as not sure whether exact substrate is used in Campylobacter jejuni. Literature search identified paper giving further clues about product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:15066034;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0903c;product=putative amino-acid transport protein;protein_id=CAL35024.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	842345	842413	.	-	.	ID=id-Cj0903c;Note=9 probable transmembrane helices predicted for Cj0903c by TMHMM2.0 at aa 27-49%2C 85-107%2C 149-171%2C 199-221%2C231-253%2C 323-345%2C 371-393%2C 405-422 and 437-459;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0903c;part=1/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	842456	842509	.	-	.	ID=id-Cj0903c;Note=9 probable transmembrane helices predicted for Cj0903c by TMHMM2.0 at aa 27-49%2C 85-107%2C 149-171%2C 199-221%2C231-253%2C 323-345%2C 371-393%2C 405-422 and 437-459;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0903c;part=2/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	842543	842611	.	-	.	ID=id-Cj0903c;Note=9 probable transmembrane helices predicted for Cj0903c by TMHMM2.0 at aa 27-49%2C 85-107%2C 149-171%2C 199-221%2C231-253%2C 323-345%2C 371-393%2C 405-422 and 437-459;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0903c;part=3/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	842687	842755	.	-	.	ID=id-Cj0903c;Note=9 probable transmembrane helices predicted for Cj0903c by TMHMM2.0 at aa 27-49%2C 85-107%2C 149-171%2C 199-221%2C231-253%2C 323-345%2C 371-393%2C 405-422 and 437-459;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0903c;part=4/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	842963	843031	.	-	.	ID=id-Cj0903c;Note=9 probable transmembrane helices predicted for Cj0903c by TMHMM2.0 at aa 27-49%2C 85-107%2C 149-171%2C 199-221%2C231-253%2C 323-345%2C 371-393%2C 405-422 and 437-459;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0903c;part=5/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	843059	843127	.	-	.	ID=id-Cj0903c;Note=9 probable transmembrane helices predicted for Cj0903c by TMHMM2.0 at aa 27-49%2C 85-107%2C 149-171%2C 199-221%2C231-253%2C 323-345%2C 371-393%2C 405-422 and 437-459;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0903c;part=6/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	843209	843277	.	-	.	ID=id-Cj0903c;Note=9 probable transmembrane helices predicted for Cj0903c by TMHMM2.0 at aa 27-49%2C 85-107%2C 149-171%2C 199-221%2C231-253%2C 323-345%2C 371-393%2C 405-422 and 437-459;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0903c;part=7/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	843401	843469	.	-	.	ID=id-Cj0903c;Note=9 probable transmembrane helices predicted for Cj0903c by TMHMM2.0 at aa 27-49%2C 85-107%2C 149-171%2C 199-221%2C231-253%2C 323-345%2C 371-393%2C 405-422 and 437-459;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0903c;part=8/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	843575	843643	.	-	.	ID=id-Cj0903c;Note=9 probable transmembrane helices predicted for Cj0903c by TMHMM2.0 at aa 27-49%2C 85-107%2C 149-171%2C 199-221%2C231-253%2C 323-345%2C 371-393%2C 405-422 and 437-459;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0903c;part=9/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	842285	843556	.	-	.	ID=id-Cj0903c-2;Note=HMMPfam hit to PF01235%2C Sodium:alanine symporter family%2C score 4.2e-138;gbkey=misc_feature;inference=protein motif:Pfam:PF01235;locus_tag=Cj0903c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	843377	843424	.	-	.	ID=id-Cj0903c-3;Note=PS00873 Sodium:alanine symporter family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00873;locus_tag=Cj0903c
gi|15791399|ref|NC_002163.1|	EMBL	gene	843825	844292	.	-	.	ID=gene-Cj0904c;Name=Cj0904c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0904c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	843825	844292	.	-	0	ID=cds-CAL35025.1;Parent=gene-Cj0904c;Dbxref=EnsemblGenomes-Gn:Cj0904c,EnsemblGenomes-Tr:CAL35025,GOA:Q0P9Z4,InterPro:IPR001537,InterPro:IPR016914,InterPro:IPR029026,InterPro:IPR029028,UniProtKB/TrEMBL:Q0P9Z4,NCBI_GP:CAL35025.1;Name=CAL35025.1;Note=Original (2000) note: Cj0904c%2C probable RNA methylase%2C len: 155 aa%3B similar to members of the spoU family e.g. YIBK_ECOLI (157 aa)%2C fasta scores%3B opt: 373 z-score: 490.5 E(): 5e-20%2C 43.3%25 identity in 150 aa overlap. No Hp match. Contains Pfam match to entry PF00588 SpoU_methylase%2C SpoU rRNA Methylase family%3B~Updated (2006) note: Putative kept within product function%2C as full characterisation has not been carried out. Functional classification - RNA synthesis%2C RNA modification and DNA transcription;gbkey=CDS;inference=protein motif:Pfam:PF00588;locus_tag=Cj0904c;product=putative RNA methylase;protein_id=CAL35025.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	843864	844292	.	-	.	ID=id-Cj0904c;Note=HMMPfam hit to PF00588%2C SpoU rRNA Methylase family%2Cscore 9.5e-32;gbkey=misc_feature;inference=protein motif:Pfam:PF00588;locus_tag=Cj0904c
gi|15791399|ref|NC_002163.1|	EMBL	gene	844295	845281	.	-	.	ID=gene-Cj0905c;Name=alr;gbkey=Gene;gene=alr;gene_biotype=protein_coding;locus_tag=Cj0905c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	844295	845281	.	-	0	ID=cds-CAL35026.1;Parent=gene-Cj0905c;Dbxref=EnsemblGenomes-Gn:Cj0905c,EnsemblGenomes-Tr:CAL35026,GOA:Q9PP26,InterPro:IPR000821,InterPro:IPR001608,InterPro:IPR009006,InterPro:IPR011079,InterPro:IPR020622,InterPro:IPR029066,NCBI_GP:CAL35026.1;Name=CAL35026.1;Note=Original (2000) note: Cj0905c%2C alr%2C probable alanine racemase%2C len: 328 aa%3B similar to e.g. TR:O85045 (EMBL:AF038438) Listeria monocytogenes alanine racemase (EC 5.1.1.1) (368 aa)%2C fasta scores%3B opt: 233 z-score: 286.6 E(): 1.2e-08%2C 32.6%25 identity in 359 aa overlap%2C and ALR1_ECOLI alanine racemase%2C biosynthetic (EC 5.1.1.1) (359 aa)%2C fasta scores%3B opt: 193 z-score: 238.5 E(): 5.5e-06%2C 25.6%25 identity in 324 aa overlap. 28.6%25 identity to HP0941. Contains Pfam match to entry PF00842 Ala_racemase%2C Alanine racemase%3B~Updated (2006) note: Characterised in Bacillus stearothermophilus and others with marginal identity scores. Appropriate motifs present. Putative not added to product function. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:9063881%2C PMID:2835089;gbkey=CDS;gene=alr;inference=protein motif:Pfam:PF00842;locus_tag=Cj0905c;product=alanine racemase;protein_id=CAL35026.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	844298	844636	.	-	.	ID=id-Cj0905c;Note=HMMPfam hit to PF00842%2C Alanine racemase%2CC-terminal domain%2C score 6.9e-39;gbkey=misc_feature;gene=alr;inference=protein motif:Pfam:PF00842;locus_tag=Cj0905c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	844649	845281	.	-	.	ID=id-Cj0905c-2;Note=HMMPfam hit to PF01168%2C Alanine racemase%2CN-terminal domain%2C score 6.2e-57;gbkey=misc_feature;gene=alr;inference=protein motif:Pfam:PF01168;locus_tag=Cj0905c
gi|15791399|ref|NC_002163.1|	EMBL	gene	845282	846259	.	-	.	ID=gene-Cj0906c;Name=Cj0906c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0906c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	845282	846259	.	-	0	ID=cds-CAL35027.1;Parent=gene-Cj0906c;Dbxref=EnsemblGenomes-Gn:Cj0906c,EnsemblGenomes-Tr:CAL35027,GOA:Q0P9Z2,InterPro:IPR005490,UniProtKB/TrEMBL:Q0P9Z2,NCBI_GP:CAL35027.1;Name=CAL35027.1;Note=Original (2000) note: Cj0906c%2C probable periplasmic protein%2C len: 325 aa%3B similar to hypothetical proteins e.g. TR:O66569 (EMBL:AE000677) Aquifex aeolicus AQ_183 (397 aa)%2C fasta scores%3B opt: 380 z-score: 432.9 E(): 8.2e-17%2C 31.1%25 identity in 270 aa overlap. 36.6%25 identity to HP0518. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Paper identified linking protein to glycoprotein. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:12186869;gbkey=CDS;locus_tag=Cj0906c;product=putative periplasmic protein;protein_id=CAL35027.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	846415	846885	.	+	.	ID=gene-Cj0908;Name=Cj0908;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0908
gi|15791399|ref|NC_002163.1|	EMBL	CDS	846415	846885	.	+	0	ID=cds-CAL35028.1;Parent=gene-Cj0908;Dbxref=EnsemblGenomes-Gn:Cj0908,EnsemblGenomes-Tr:CAL35028,UniProtKB/TrEMBL:Q0P9Z1,NCBI_GP:CAL35028.1;Name=CAL35028.1;Note=Original (2000) note: Cj0908%2C probable periplasmic protein%2C len: 156 aa%3B no Hp match. Contains probable N-terminal signal sequence. Similar to downstream gene Cj0910 (41.3%25 identity in 143 aa overlap). Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0908;product=putative periplasmic protein;protein_id=CAL35028.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	846427	846483	.	+	.	ID=id-Cj0908;Note=1 probable transmembrane helix predicted for Cj0908 by TMHMM2.0 at aa 5-23;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0908
gi|15791399|ref|NC_002163.1|	EMBL	gene	846971	847390	.	+	.	ID=gene-Cj0909;Name=Cj0909;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0909
gi|15791399|ref|NC_002163.1|	EMBL	CDS	846971	847390	.	+	0	ID=cds-CAL35029.1;Parent=gene-Cj0909;Dbxref=EnsemblGenomes-Gn:Cj0909,EnsemblGenomes-Tr:CAL35029,InterPro:IPR007410,UniProtKB/TrEMBL:Q0P9Z0,NCBI_GP:CAL35029.1;Name=CAL35029.1;Note=Original (2000) note: Cj0909%2C probable periplasmic protein%2C len: 139 aa%3B similar to TR:O67294 (EMBL:AE000731) Aquifex aeolicus AQ_1253 (151 aa)%2C fasta scores%3B opt: 208 z-score: 273.4 E(): 6.3e-08%2C 34.3%25 identity in 134 aa overlap. No Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF04314 Protein of unknown function (DUF461) identified within CDS. This Pfam is linked to being a putative membrane or periplasmic protein. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Pfam:PF04314;locus_tag=Cj0909;product=putative periplasmic protein;protein_id=CAL35029.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	847037	847384	.	+	.	ID=id-Cj0909;Note=HMMPfam hit to PF04314%2C Protein of unknown function (DUF461)%2C score 1.3e-62;gbkey=misc_feature;inference=protein motif:Pfam:PF04314;locus_tag=Cj0909
gi|15791399|ref|NC_002163.1|	EMBL	gene	847394	847846	.	+	.	ID=gene-Cj0910;Name=Cj0910;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0910
gi|15791399|ref|NC_002163.1|	EMBL	CDS	847394	847846	.	+	0	ID=cds-CAL35030.1;Parent=gene-Cj0910;Dbxref=EnsemblGenomes-Gn:Cj0910,EnsemblGenomes-Tr:CAL35030,UniProtKB/TrEMBL:Q0P9Y9,NCBI_GP:CAL35030.1;Name=CAL35030.1;Note=Original (2000) note: Cj0910%2C probable periplasmic protein%2C len: 150 aa%3B no Hp match. Contains probable N-terminal signal sequence. Similar to downstream gene Cj0908 (41.3%25 identity in 145 aa overlap). Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0910;product=putative periplasmic protein;protein_id=CAL35030.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	847403	847471	.	+	.	ID=id-Cj0910;Note=1 probable transmembrane helix predicted for Cj0910 by TMHMM2.0 at aa 4-26;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0910
gi|15791399|ref|NC_002163.1|	EMBL	gene	847843	848403	.	+	.	ID=gene-Cj0911;Name=Cj0911;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0911
gi|15791399|ref|NC_002163.1|	EMBL	CDS	847843	848403	.	+	0	ID=cds-CAL35031.1;Parent=gene-Cj0911;Dbxref=EnsemblGenomes-Gn:Cj0911,EnsemblGenomes-Tr:CAL35031,InterPro:IPR003782,InterPro:IPR012336,UniProtKB/TrEMBL:Q0P9Y8,NCBI_GP:CAL35031.1;Name=CAL35031.1;Note=Original (2000) note: Cj0911%2C probable periplasmic protein%2C len: 186 aa%3B similar to bacterial hypotheticals e.g. TR:O67113 (EMBL:AE000717) Aquifex aeolicus AQ_988 (197 aa)%2C fasta scores%3B opt: 260 z-score: 314.1 E(): 3.4e-10%2C 28.1%25 identity in 167 aa overlap%2C and to N-terminus of eukaryotic proteins e.g. SCO1_YEAST SCO1 protein precursor (295 aa)%2C opt: 213 z-score: 257.2 E(): 5e-07%2C 32.1%25 identity in 137 aa overlap. No Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF02630 SCO1/SenC identified within CDS. Characterization has been carried out in Rhodobacter capsulatus%2C however%2C identity scores was unnacceptable. Putative kept in product function. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:7592491;gbkey=CDS;inference=protein motif:Pfam:PF02630;locus_tag=Cj0911;product=putative periplasmic protein;protein_id=CAL35031.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	847855	847908	.	+	.	ID=id-Cj0911;Note=1 probable transmembrane helix predicted for Cj0911 by TMHMM2.0 at aa 5-22;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0911
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	847858	848352	.	+	.	ID=id-Cj0911-2;Note=HMMPfam hit to PF02630%2C SCO1/SenC%2C score 2.3e-09;gbkey=misc_feature;inference=protein motif:Pfam:PF02630;locus_tag=Cj0911
gi|15791399|ref|NC_002163.1|	EMBL	gene	848410	849309	.	-	.	ID=gene-Cj0912c;Name=cysM;gbkey=Gene;gene=cysM;gene_biotype=protein_coding;locus_tag=Cj0912c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	848410	849309	.	-	0	ID=cds-CAL35032.1;Parent=gene-Cj0912c;Dbxref=EnsemblGenomes-Gn:Cj0912c,EnsemblGenomes-Tr:CAL35032,GOA:P71128,InterPro:IPR000634,InterPro:IPR001216,InterPro:IPR001926,InterPro:IPR005856,InterPro:IPR005859,NCBI_GP:CAL35032.1;Name=CAL35032.1;Note=Original (2000) note: Cj0912c%2C cysM%2C cysteine synthase%2C len: 299 aa%3B 98.7%25 identical to CYSM_CAMJE cysteine synthase B (EC 4.2.99.8) (299 aa)%2C and similar to many e.g. CYSK_BACSU CYSTEINE SYNTHASE (EC 4.2.99.8) (307 aa)%2C fasta scores%3B opt: 907 z-score: 1020.2 E(): 0%2C 48.5%25 identity in 305 aa overlap. 38.9%25 identity to HP0107. Contains PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site%2C PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site%2C and Pfam match to entry PF00291 S_T_dehydratase%2C Pyridoxal-phosphate dependant enzymes%3B~Updated (2006) note: Characterised in Campylobacter jejuni%2C so putative not added to product function. Functional classification - Amino acid biosynthesis -Serine family%3B~PMID:9034314;gbkey=CDS;gene=cysM;inference=protein motif:Prosite:PS00901;locus_tag=Cj0912c;product=cysteine synthase;protein_id=CAL35032.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	848446	849291	.	-	.	ID=id-Cj0912c;Note=HMMPfam hit to PF00291%2C Pyridoxal-phosphate dependent enzyme%2C score 2.3e-116;gbkey=misc_feature;gene=cysM;inference=protein motif:Pfam:PF00291;locus_tag=Cj0912c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	849169	849225	.	-	.	ID=id-Cj0912c-2;Note=PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site;gbkey=misc_feature;gene=cysM;inference=protein motif:Prosite:PS00901;locus_tag=Cj0912c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	849178	849219	.	-	.	ID=id-Cj0912c-3;Note=PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=cysM;inference=protein motif:Prosite:PS00165;locus_tag=Cj0912c
gi|15791399|ref|NC_002163.1|	EMBL	gene	849436	849732	.	-	.	ID=gene-Cj0913c;Name=hupB;gbkey=Gene;gene=hupB;gene_biotype=protein_coding;locus_tag=Cj0913c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	849436	849732	.	-	0	ID=cds-CAL35033.1;Parent=gene-Cj0913c;Dbxref=EnsemblGenomes-Gn:Cj0913c,EnsemblGenomes-Tr:CAL35033,GOA:Q46121,InterPro:IPR000119,InterPro:IPR010992,NCBI_GP:CAL35033.1;Name=CAL35033.1;Note=Original (2000) note: Cj0913c%2C hupB%2C DNA-binding protein HU homolog%2C len: 98 aa%3B identical to TR:Q46121 (EMBL:L25627) DNA-binding protein HU homolog (98 aa)%2C and highly similar to many e.g. DBHB_ECOLI DNA-binding protein HU-beta (90 aa)%2C fasta scores%3B opt: 272 z-score: 356.7 E(): 1.4e-12%2C 44.9%25 identity in 89 aa overlap. 42.2%25 identity to HP0835. Contains Pfam match to entry PF00216 Bac_DNA_binding%2C Bacterial DNA-binding protein%3B~Updated (2006) note: Characterised in Campylobacter jejuni and many others. Putative not added to product function. Functional classification - Synthesis and modification of macromolecules - Nucleoproteins%3B~PMID:8063109;gbkey=CDS;gene=hupB;inference=protein motif:Pfam:PF00216;locus_tag=Cj0913c;product=DNA-binding protein HU homolog;protein_id=CAL35033.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	849463	849732	.	-	.	ID=id-Cj0913c;Note=HMMPfam hit to PF00216%2C Bacterial DNA-binding protein%2C score 1.9e-42;gbkey=misc_feature;gene=hupB;inference=protein motif:Pfam:PF00216;locus_tag=Cj0913c
gi|15791399|ref|NC_002163.1|	EMBL	gene	849834	851666	.	-	.	ID=gene-Cj0914c;Name=ciaB;gbkey=Gene;gene=ciaB;gene_biotype=protein_coding;locus_tag=Cj0914c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	849834	851666	.	-	0	ID=cds-CAL35034.1;Parent=gene-Cj0914c;Dbxref=EnsemblGenomes-Gn:Cj0914c,EnsemblGenomes-Tr:CAL35034,UniProtKB/TrEMBL:Q0P9Y5,NCBI_GP:CAL35034.1;Name=CAL35034.1;Note=Original (2000) note: Cj0914c%2C ciaB%2C unknown function%2C len: 610 aa%3B no Hp match. Product is translocated into host cells. Mutants fail to translocate%2Cand fail to translocate other proteins. Contains PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature%3B~Updated (2006) note: Papers attached giving further information regarding this CDS. Functional classification - Pathogenicity%3B~PMID:10361274%2C PMID:10540297%2C PMID:10659361%2CPMID:15722140;gbkey=CDS;gene=ciaB;inference=protein motif:Prosite:PS00142;locus_tag=Cj0914c;product=CiaB protein;protein_id=CAL35034.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	850365	850394	.	-	.	ID=id-Cj0914c;Note=PS00142 Neutral zinc metallopeptidases%2Czinc-binding region signature;gbkey=misc_feature;gene=ciaB;inference=protein motif:Prosite:PS00142;locus_tag=Cj0914c
gi|15791399|ref|NC_002163.1|	EMBL	gene	851728	852141	.	+	.	ID=gene-Cj0915;Name=Cj0915;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0915
gi|15791399|ref|NC_002163.1|	EMBL	CDS	851728	852141	.	+	0	ID=cds-CAL35035.1;Parent=gene-Cj0915;Dbxref=EnsemblGenomes-Gn:Cj0915,EnsemblGenomes-Tr:CAL35035,GOA:Q0P9Y4,InterPro:IPR006683,InterPro:IPR029069,PDB:3D6L,UniProtKB/TrEMBL:Q0P9Y4,NCBI_GP:CAL35035.1;Name=CAL35035.1;Note=Original (2000) note: Cj0915%2C possible hydrolase%2Clen: 137 aa%3B similar to prokaryotic hypotheticals e.g. YCIA_ECOLI (132 aa)%2C fasta scores%3B opt: 351 z-score: 440.7 E(): 3e-17%2C 41.5%25 identity in 123 aa overlap%2C and to eukaryotic acyl-CoA hydrolases e.g. THCC_HUMAN cytosolic acyl coenzyme A thioester hydrolase (372 aa)%2C fasta scores%3B opt: 174 z-score: 220.2 E(): 5.7e-05%2C 31.6%25 identity in 114 aa overlap. 25.4%25 identity to HP0891 (VDLD_HELPY)%3B~Updated (2006) note: Pfam domain PF03061 Thioesterase superfamily identified within CDS. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Misc%3B~PMID:12426338;gbkey=CDS;inference=protein motif:Pfam:PF03061;locus_tag=Cj0915;product=putative hydrolase;protein_id=CAL35035.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	851788	852021	.	+	.	ID=id-Cj0915;Note=HMMPfam hit to PF03061%2C Thioesterase superfamily%2Cscore 7.8e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF03061;locus_tag=Cj0915
gi|15791399|ref|NC_002163.1|	EMBL	gene	852181	852378	.	-	.	ID=gene-Cj0916c;Name=Cj0916c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0916c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	852181	852378	.	-	0	ID=cds-CAL35036.1;Parent=gene-Cj0916c;Dbxref=EnsemblGenomes-Gn:Cj0916c,EnsemblGenomes-Tr:CAL35036,InterPro:IPR007423,UniProtKB/TrEMBL:Q0P9Y3,NCBI_GP:CAL35036.1;Name=CAL35036.1;Note=Original (2000) note: Cj0916c%2C unknown%2C len: 65 aa%3B similar to two hypothetical E. coli proteins%3B YBDD_ECOLI (65 aa)%2C fasta scores%3B opt: 154 z-score: 227.0 E(): 2.5e-05%2C 41.3%25 identity in 46 aa overlap%2C and YJIX_ECOLI (67 aa)%2C fasta scores%3B opt: 141 z-score: 209.5 E(): 0.00023%2C 35.8%25 identity in 67 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF04328 Protein of unknown function (DUF466) identified within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF04328;locus_tag=Cj0916c;product=conserved hypothetical protein Cj0916c;protein_id=CAL35036.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	852184	852378	.	-	.	ID=id-Cj0916c;Note=HMMPfam hit to PF04328%2C Protein of unknown function (DUF466)%2C score 1.2e-39;gbkey=misc_feature;inference=protein motif:Pfam:PF04328;locus_tag=Cj0916c
gi|15791399|ref|NC_002163.1|	EMBL	gene	852359	854470	.	-	.	ID=gene-Cj0917c;Name=cstA;gbkey=Gene;gene=cstA;gene_biotype=protein_coding;locus_tag=Cj0917c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	852359	854470	.	-	0	ID=cds-CAL35037.1;Parent=gene-Cj0917c;Dbxref=EnsemblGenomes-Gn:Cj0917c,EnsemblGenomes-Tr:CAL35037,GOA:Q0P9Y2,InterPro:IPR003706,InterPro:IPR025299,UniProtKB/TrEMBL:Q0P9Y2,NCBI_GP:CAL35037.1;Name=CAL35037.1;Note=Original (2000) note: Cj0917c%2C cstA%2C integral membrane protein%2C homolog of carbon starvation protein A%2Clen: 703 aa%3B highly similar to e.g. CSTA_ECOLI carbon starvation protein A (701 aa)%2C fasta scores%3B opt: 2523 z-score: 2823.2 E(): 0%2C 56.0%25 identity in 707 aa overlap. 65.6%25 identity to HP1168%3B~Updated (2006) note: Pfam domain PF02554 Carbon starvation protein CstA identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Membranes%2C lipoproteins and porins%3B~PMID:1848300;gbkey=CDS;gene=cstA;inference=protein motif:Pfam:PF02554;locus_tag=Cj0917c;product=putative integral membrane protein (CstA homolog);protein_id=CAL35037.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	852422	852490	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=1/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	852689	852748	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=2/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	852785	852853	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=3/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	852881	852949	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=4/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	853010	853078	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=5/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	853313	853381	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=6/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	853442	853510	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=7/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	853553	853621	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=8/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	853640	853708	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=9/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	853751	853819	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=10/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	853832	853900	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=11/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	853928	853996	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=12/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	854057	854116	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=13/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	854144	854212	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=14/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	854297	854365	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=15/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	854393	854452	.	-	.	ID=id-Cj0917c;Note=16 probable transmembrane helices predicted for Cj0917c by TMHMM2.0 at aa 7-26%2C 36-58%2C 87-109%2C 119-138%2C159-181%2C 191-213%2C 218-240%2C 255-277%2C 284-306%2C 321-343%2C364-386%2C 465-487%2C 508-530%2C 540-562%2C 575-594 and 661-683;gbkey=misc_feature;gene=cstA;inference=protein motif:TMHMM:2.0;locus_tag=Cj0917c;part=16/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	852440	852472	.	-	.	ID=id-Cj0917c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=cstA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0917c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	853175	854377	.	-	.	ID=id-Cj0917c-3;Note=HMMPfam hit to PF02554%2C Carbon starvation protein CstA%2C score 3.2e-248;gbkey=misc_feature;gene=cstA;inference=protein motif:Pfam:PF02554;locus_tag=Cj0917c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	853319	853351	.	-	.	ID=id-Cj0917c-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=cstA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0917c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	853463	853495	.	-	.	ID=id-Cj0917c-5;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=cstA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0917c
gi|15791399|ref|NC_002163.1|	EMBL	gene	854637	855566	.	-	.	ID=gene-Cj0918c;Name=prsA;gbkey=Gene;gene=prsA;gene_biotype=protein_coding;locus_tag=Cj0918c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	854637	855566	.	-	0	ID=cds-CAL35038.1;Parent=gene-Cj0918c;Dbxref=EnsemblGenomes-Gn:Cj0918c,EnsemblGenomes-Tr:CAL35038,GOA:Q9PP15,InterPro:IPR000842,InterPro:IPR005946,InterPro:IPR029057,InterPro:IPR029099,NCBI_GP:CAL35038.1;Name=CAL35038.1;Note=Original (2000) note: Cj0918c%2C prsA%2C probable ribose-phosphate pyrophosphokinase%2C len: 309 aa%3B highly similar to many e.g. KPRS_ECOLI ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (314 aa)%2C fasta scores%3B opt: 1167 z-score: 1345.2 E(): 0%2C 57.1%25 identity in 310 aa overlap. 71.4%25 identity to HP0742. Contains PS00114 Phosphoribosyl pyrophosphate synthetase signature%2C PS00103 Purine/pyrimidine phosphoribosyl transferases signature%2Cand Pfam match to entry PF00492 PRPP_synt%2C Phosphoribosyl pyrophosphate synthetase%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Purine ribonucleotide biosynthesis%3B~PMID:2542328%2C PMID:16689801;gbkey=CDS;gene=prsA;inference=protein motif:Prosite:PS00114;locus_tag=Cj0918c;product=ribose-phosphate pyrophosphokinase;protein_id=CAL35038.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	854760	855152	.	-	.	ID=id-Cj0918c;Note=HMMPfam hit to PF00156%2C Phosphoribosyl transferase domain%2C score 2.6e-35;gbkey=misc_feature;gene=prsA;inference=protein motif:Pfam:PF00156;locus_tag=Cj0918c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	854889	854927	.	-	.	ID=id-Cj0918c-2;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature;gbkey=misc_feature;gene=prsA;inference=protein motif:Prosite:PS00103;locus_tag=Cj0918c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	855138	855185	.	-	.	ID=id-Cj0918c-3;Note=PS00114 Phosphoribosyl pyrophosphate synthetase signature;gbkey=misc_feature;gene=prsA;inference=protein motif:Prosite:PS00114;locus_tag=Cj0918c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	855186	855215	.	-	.	ID=id-Cj0918c-4;Note=PS00339 Aminoacyl-transfer RNA synthetases class-II signature 2;gbkey=misc_feature;gene=prsA;inference=protein motif:Prosite:PS00339;locus_tag=Cj0918c
gi|15791399|ref|NC_002163.1|	EMBL	gene	855674	856333	.	-	.	ID=gene-Cj0919c;Name=Cj0919c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0919c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	855674	856333	.	-	0	ID=cds-CAL35039.1;Parent=gene-Cj0919c;Dbxref=EnsemblGenomes-Gn:Cj0919c,EnsemblGenomes-Tr:CAL35039,GOA:Q0P9Y0,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q0P9Y0,NCBI_GP:CAL35039.1;Name=CAL35039.1;Note=Original (2000) note: Cj0919c%2C probable ABC-type amino-acid transporter permease protein%2C len: 219 aa%3B similar to many e.g. GLTK_ECOLI glutamate/aspartate transport system permease protein (224 aa)%2C fasta scores%3B opt: 380 z-score: 457.9 E(): 3.3e-18%2C 32.6%25 identity in 221 aa overlap. No Hp ortholog. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign.%2C and Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%3B~Updated (2006) note: Three probable transmembrane helices predicted by TMHMM2.0. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:16689801;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0919c;product=putative ABC-type amino-acid transporter permease protein;protein_id=CAL35039.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	855710	855778	.	-	.	ID=id-Cj0919c;Note=3 probable transmembrane helices predicted for Cj0919c by TMHMM2.0 at aa 23-45%2C 66-88 and 186-208;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0919c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	856070	856138	.	-	.	ID=id-Cj0919c;Note=3 probable transmembrane helices predicted for Cj0919c by TMHMM2.0 at aa 23-45%2C 66-88 and 186-208;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0919c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	856199	856267	.	-	.	ID=id-Cj0919c;Note=3 probable transmembrane helices predicted for Cj0919c by TMHMM2.0 at aa 23-45%2C 66-88 and 186-208;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0919c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	855683	856297	.	-	.	ID=id-Cj0919c-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 7.4e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF00528;locus_tag=Cj0919c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	855923	856009	.	-	.	ID=id-Cj0919c-3;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign;gbkey=misc_feature;inference=protein motif:Prosite:PS00402;locus_tag=Cj0919c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	856115	856147	.	-	.	ID=id-Cj0919c-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0919c
gi|15791399|ref|NC_002163.1|	EMBL	gene	856344	857096	.	-	.	ID=gene-Cj0920c;Name=Cj0920c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0920c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	856344	857096	.	-	0	ID=cds-CAL35040.1;Parent=gene-Cj0920c;Dbxref=EnsemblGenomes-Gn:Cj0920c,EnsemblGenomes-Tr:CAL35040,GOA:Q0P9X9,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q0P9X9,NCBI_GP:CAL35040.1;Name=CAL35040.1;Note=Original (2000) note: Cj0920c%2C probable ABC-type amino-acid transporter permease protein%2C len: 250 aa%3B similar to many e.g. YCKA_BACSU probable amino-acid ABC transporter permease protein (226 aa)%2C fasta scores%3B opt: 448 z-score: 560.9 E(): 6e-24%2C 32.0%25 identity in 219 aa overlap. No Hp ortholog. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign.%2C and Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%3B~Updated (2006) note: Three probable transmembrane helices predicted by TMHMM2.0. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification -Transport/binding proteins - Amino acids and amines%3B~PMID:16689801;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0920c;product=putative ABC-type amino-acid transporter permease protein;protein_id=CAL35040.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	856389	856457	.	-	.	ID=id-Cj0920c;Note=3 probable transmembrane helices predicted for Cj0920c by TMHMM2.0 at aa 47-69%2C 90-112 and 214-236;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0920c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	856761	856829	.	-	.	ID=id-Cj0920c;Note=3 probable transmembrane helices predicted for Cj0920c by TMHMM2.0 at aa 47-69%2C 90-112 and 214-236;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0920c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	856890	856958	.	-	.	ID=id-Cj0920c;Note=3 probable transmembrane helices predicted for Cj0920c by TMHMM2.0 at aa 47-69%2C 90-112 and 214-236;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0920c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	856362	856967	.	-	.	ID=id-Cj0920c-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 1.2e-24;gbkey=misc_feature;inference=protein motif:Pfam:PF00528;locus_tag=Cj0920c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	856593	856679	.	-	.	ID=id-Cj0920c-3;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign;gbkey=misc_feature;inference=protein motif:Prosite:PS00402;locus_tag=Cj0920c
gi|15791399|ref|NC_002163.1|	EMBL	gene	857098	857877	.	-	.	ID=gene-Cj0921c;Name=peb1A;gbkey=Gene;gene=peb1A;gene_biotype=protein_coding;locus_tag=Cj0921c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	857098	857877	.	-	0	ID=cds-CAL35041.1;Parent=gene-Cj0921c;Dbxref=EnsemblGenomes-Gn:Cj0921c,EnsemblGenomes-Tr:CAL35041,GOA:Q0P9X8,InterPro:IPR001638,InterPro:IPR018313,PDB:2V25,NCBI_GP:CAL35041.1;Name=CAL35041.1;Note=Original (2000) note: Cj0921c%2C peb1A%2C probable ABC-type amino-acid transporter periplasmic solute-binding protein%2C len: 259 aa%3B identical to PEB1_CAMJE%2C and similar to many e.g. GLNH_BACST glutamine-binding protein precursor (262 aa)%2C fasta scores%3B opt: 499 z-score: 568.7 E(): 2.2e-24%2C 38.8%25 identity in 219 aa overlap. No Hp ortholog. Contains probable N-terminal signal sequence%2CPS01039 Bacterial extracellular solute-binding proteins%2Cfamily 3 signature%2C and Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C family 3%3B~Updated (2006) note: Characterised in Campylobacter jejuni. Product modified to more specific family member. Putative removed from product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:16689801;gbkey=CDS;gene=peb1A;inference=protein motif:Prosite:PS01039;locus_tag=Cj0921c;product=aspartate/glutamate-binding ABC transporter protein;protein_id=CAL35041.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	857101	857760	.	-	.	ID=id-Cj0921c;Note=HMMPfam hit to PF00497%2C Bacterial extracellular solute-binding prot%2C score 5.3e-41;gbkey=misc_feature;gene=peb1A;inference=protein motif:Pfam:PF00497;locus_tag=Cj0921c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	857650	857691	.	-	.	ID=id-Cj0921c-2;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature;gbkey=misc_feature;gene=peb1A;inference=protein motif:Prosite:PS01039;locus_tag=Cj0921c
gi|15791399|ref|NC_002163.1|	EMBL	gene	857899	858627	.	-	.	ID=gene-Cj0922c;Name=pebC;gbkey=Gene;gene=pebC;gene_biotype=protein_coding;locus_tag=Cj0922c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	857899	858627	.	-	0	ID=cds-CAL35042.1;Parent=gene-Cj0922c;Dbxref=EnsemblGenomes-Gn:Cj0922c,EnsemblGenomes-Tr:CAL35042,GOA:Q0P9X7,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL35042.1;Name=CAL35042.1;Note=Original (2000) note: Cj0922c%2C pebC%2C probable ABC-type amino-acid transporter ATP-binding protein%2C len: 242 aa%3B 98.8%25 identical to PEBC_CAMJE%2C and similar to many e.g. GLNQ_BACST glutamine transport ATP-binding protein (242 aa)%2C fasta scores%3B opt: 1013 z-score: 1161.8 E(): 0%2C64.6%25 identity in 243 aa overlap. No Hp ortholog. Contains PS00211 ABC transporters family signature%2C PS00017 ATP/GTP-binding site motif A (P-loop)%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Putative not added to product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:16689801;gbkey=CDS;gene=pebC;inference=protein motif:Prosite:PS00211;locus_tag=Cj0922c;product=ABC-type amino-acid transporter ATP-binding protein;protein_id=CAL35042.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	857992	858549	.	-	.	ID=id-Cj0922c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 1.3e-64;gbkey=misc_feature;gene=pebC;inference=protein motif:Pfam:PF00005;locus_tag=Cj0922c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	858178	858222	.	-	.	ID=id-Cj0922c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=pebC;inference=protein motif:Prosite:PS00211;locus_tag=Cj0922c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	858505	858528	.	-	.	ID=id-Cj0922c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=pebC;inference=protein motif:Prosite:PS00017;locus_tag=Cj0922c
gi|15791399|ref|NC_002163.1|	EMBL	gene	858763	859551	.	-	.	ID=gene-Cj0923c;Name=cheR;gbkey=Gene;gene=cheR;gene_biotype=protein_coding;locus_tag=Cj0923c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	858763	859551	.	-	0	ID=cds-CAL35043.1;Parent=gene-Cj0923c;Dbxref=EnsemblGenomes-Gn:Cj0923c,EnsemblGenomes-Tr:CAL35043,GOA:Q0P9X6,InterPro:IPR000780,InterPro:IPR022641,InterPro:IPR022642,InterPro:IPR029063,NCBI_GP:CAL35043.1;Name=CAL35043.1;Note=Original (2000) note: Cj0923c%2C cheR%2C probable MCP protein methyltransferase%2C len: 262 aa%3B identical to YPEB_CAMJE%2C and similar to e.g. CHER_BACSU chemotaxis protein methyltransferase (EC 2.1.1.80) (256 aa)%2C fasta scores%3B opt: 357 z-score: 432.6 E(): 8.5e-17%2C 31.6%25 identity in 231 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF01739 CheR methyltransferase%2C SAM binding domain and PF03705 CheR methyltransferase%2C all-alpha domain were identified within CDS. Further support given to product function. Characterised in more than one genus%2C however%2C identity scores were marginal. Putative kept within product function. Functional classification - Chemotaxis and mobility%3B~PMID:8244966%2C PMID:8360165%2C PMID:3510184%2CPMID:11669626;gbkey=CDS;gene=cheR;inference=protein motif:Pfam:PF03705;locus_tag=Cj0923c;product=putative MCP protein methyltransferase;protein_id=CAL35043.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	858778	859332	.	-	.	ID=id-Cj0923c;Note=HMMPfam hit to PF01739%2C CheR methyltransferase%2C SAM binding domain%2C score 5.3e-73;gbkey=misc_feature;gene=cheR;inference=protein motif:Pfam:PF01739;locus_tag=Cj0923c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	859363	859530	.	-	.	ID=id-Cj0923c-2;Note=HMMPfam hit to PF03705%2C CheR methyltransferase%2Call-alpha domain%2C score 3e-12;gbkey=misc_feature;gene=cheR;inference=protein motif:Pfam:PF03705;locus_tag=Cj0923c
gi|15791399|ref|NC_002163.1|	EMBL	gene	859567	860121	.	-	.	ID=gene-Cj0924c;Name=cheB';gbkey=Gene;gene=cheB';gene_biotype=protein_coding;locus_tag=Cj0924c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	859567	860121	.	-	0	ID=cds-CAL35044.1;Parent=gene-Cj0924c;Dbxref=EnsemblGenomes-Gn:Cj0924c,EnsemblGenomes-Tr:CAL35044,GOA:Q0P9X5,InterPro:IPR000673,UniProtKB/TrEMBL:Q0P9X5,NCBI_GP:CAL35044.1;Name=CAL35044.1;Note=Original (2000) note: Cj0924c%2C cheB' probable MCP protein-glutamate methylesterase%2C len: 184 aa%3B similar to the methylesterase domain of e.g. CHEB_ECOLI protein-glutamate methylesterase (EC 3.1.1.61) (349 aa)%2Cfasta scores%3B opt: 339 z-score: 430.2 E(): 1.1e-16%2C 34.4%25 identity in 183 aa overlap. Note that the 'response reciever domain' normally found in cheB is not present. No Hp match%3B~Updated (2006) note: Characterised within Escherichia coli%2C however%2C identity scores were marginal. Possible truncated protein as missing receiver domain of CheB protein. Putative kept within product function. Functional classification - Chemotaxis and mobility%3B~PMID:3280143%2C PMID:3510184%2C PMID:2188960%2CPMID:8244966;gbkey=CDS;gene=cheB';locus_tag=Cj0924c;product=putative MCP protein-glutamate methylesterase;protein_id=CAL35044.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	859582	860115	.	-	.	ID=id-Cj0924c;Note=HMMPfam hit to PF01339%2C CheB methylesterase%2C score 7.1e-18;gbkey=misc_feature;gene=cheB';inference=protein motif:Pfam:PF01339;locus_tag=Cj0924c
gi|15791399|ref|NC_002163.1|	EMBL	gene	860287	860724	.	+	.	ID=gene-Cj0925;Name=rpiB;gbkey=Gene;gene=rpiB;gene_biotype=protein_coding;locus_tag=Cj0925
gi|15791399|ref|NC_002163.1|	EMBL	CDS	860287	860724	.	+	0	ID=cds-CAL35045.1;Parent=gene-Cj0925;Dbxref=EnsemblGenomes-Gn:Cj0925,EnsemblGenomes-Tr:CAL35045,GOA:Q0P9X4,InterPro:IPR003500,InterPro:IPR004785,UniProtKB/TrEMBL:Q0P9X4,NCBI_GP:CAL35045.1;Name=CAL35045.1;Note=Original (2000) note: Cj0925%2C rpiB%2C probable ribose 5-phosphate isomerase%2C len: 145 aa%3B highly similar to e.g. RPIB_ECOLI ribose 5-phosphate isomerase B (EC 5.3.1.6) (149 aa)%2C fasta scores%3B opt: 399 z-score: 505.9 E(): 7e-21%2C 45.0%25 identity in 140 aa overlap. 45.0%25 identity to HP0574%2C misannotated as galactosidase acetyltransferase (lacA)%3B~Updated (2006) note: Prosite domain PS00237 G_PROTEIN_RECEP_F1_1%2C Rhodopsin-like GPCR superfamily and Pfam domain PF02502 Ribose/Galactose Isomerase were identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score. Putative removed from product funtion. Functional classification - Energy metabolism -Pentose phosphate pathway - Non-oxidative branch%3B~PMID:8576032%2CPMID:14499611;gbkey=CDS;gene=rpiB;inference=protein motif:Prosite:PS00237;locus_tag=Cj0925;product=ribose 5-phosphate isomerase;protein_id=CAL35045.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	860470	860712	.	+	.	ID=id-Cj0925;Note=HMMPfam hit to PF02502%2C Ribose/Galactose Isomerase%2Cscore 2.4e-46;gbkey=misc_feature;gene=rpiB;inference=protein motif:Pfam:PF02502;locus_tag=Cj0925
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	860482	860532	.	+	.	ID=id-Cj0925-2;Note=PS00237 G-protein coupled receptors signature;gbkey=misc_feature;gene=rpiB;inference=protein motif:Prosite:PS00237;locus_tag=Cj0925
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	860536	860553	.	+	.	ID=id-Cj0925-3;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=rpiB;inference=protein motif:Prosite:PS00190;locus_tag=Cj0925
gi|15791399|ref|NC_002163.1|	EMBL	gene	860724	861056	.	+	.	ID=gene-Cj0926;Name=Cj0926;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0926
gi|15791399|ref|NC_002163.1|	EMBL	CDS	860724	861056	.	+	0	ID=cds-CAL35046.1;Parent=gene-Cj0926;Dbxref=EnsemblGenomes-Gn:Cj0926,EnsemblGenomes-Tr:CAL35046,GOA:Q0P9X3,UniProtKB/TrEMBL:Q0P9X3,NCBI_GP:CAL35046.1;Name=CAL35046.1;Note=Original (2000) note: Cj0926%2C possible membrane protein%2C len: 110 aa%3B 50.0%25 identity to HP0573. Contains possible transmembrane domain at N-terminus%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0926;product=putative membrane protein;protein_id=CAL35046.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	860736	860795	.	+	.	ID=id-Cj0926;Note=1 probable transmembrane helix predicted for Cj0926 by TMHMM2.0 at aa 5-24;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0926
gi|15791399|ref|NC_002163.1|	EMBL	gene	861053	861601	.	+	.	ID=gene-Cj0927;Name=apt;gbkey=Gene;gene=apt;gene_biotype=protein_coding;locus_tag=Cj0927
gi|15791399|ref|NC_002163.1|	EMBL	CDS	861053	861601	.	+	0	ID=cds-CAL35047.1;Parent=gene-Cj0927;Dbxref=EnsemblGenomes-Gn:Cj0927,EnsemblGenomes-Tr:CAL35047,GOA:Q9PP06,InterPro:IPR000836,InterPro:IPR005764,InterPro:IPR029057,NCBI_GP:CAL35047.1;Name=CAL35047.1;Note=Original (2000) note: Cj0927%2C apt%2C probable adenine phosphoribosyltransferase%2C len: 182 aa%3B similar to e.g. APT_ECOLI adenine phosphoribosyltransferase (EC 2.4.2.7) (183 aa)%2C fasta scores%3B opt: 530 z-score: 656.2 E(): 3e-29%2C 48.3%25 identity in 178 aa overlap. 52.8%25 identity to HP0572. Contains PS00030 Eukaryotic putative RNA-binding region RNP-1 signature%2C PS00103 Purine/pyrimidine phosphoribosyl transferases signature%2C and Pfam match to entry PF00156 Pribosyltran%2C Purine/pyrimidine phosphoribosyl transferases%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Salvage of nucleosides and nucleotides%3B~PMID:348574%2C PMID:3527873;gbkey=CDS;gene=apt;inference=protein motif:Prosite:PS00103;locus_tag=Cj0927;product=adenine phosphoribosyltransferase;protein_id=CAL35047.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	861143	861559	.	+	.	ID=id-Cj0927;Note=HMMPfam hit to PF00156%2C Phosphoribosyl transferase domain%2C score 1.6e-41;gbkey=misc_feature;gene=apt;inference=protein motif:Pfam:PF00156;locus_tag=Cj0927
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	861251	861274	.	+	.	ID=id-Cj0927-2;Note=PS00030 Eukaryotic putative RNA-binding region RNP-1 signature;gbkey=misc_feature;gene=apt;inference=protein motif:Prosite:PS00030;locus_tag=Cj0927
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	861425	861463	.	+	.	ID=id-Cj0927-3;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature;gbkey=misc_feature;gene=apt;inference=protein motif:Prosite:PS00103;locus_tag=Cj0927
gi|15791399|ref|NC_002163.1|	EMBL	gene	861620	862216	.	+	.	ID=gene-Cj0928;Name=Cj0928;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0928
gi|15791399|ref|NC_002163.1|	EMBL	CDS	861620	862216	.	+	0	ID=cds-CAL35048.1;Parent=gene-Cj0928;Dbxref=EnsemblGenomes-Gn:Cj0928,EnsemblGenomes-Tr:CAL35048,InterPro:IPR015414,UniProtKB/TrEMBL:Q0P9X1,NCBI_GP:CAL35048.1;Name=CAL35048.1;Note=Original (2000) note: Cj0928%2C probable integral membrane protein%2C len: 198 aa%3B similar to members of the dedA family of hypothetical integral membrane proteins e.g. YOHD_ECOLI (192 aa)%2C fasta scores%3B opt: 303 z-score: 394.8 E(): 1.1e-14%2C 29.1%25 identity in 172 aa overlap%2C and DEDA_ECOLI DEDA protein (219 aa)%2C fasta scores%3B opt: 169 z-score: 224.4 E(): 3.3e-05%2C 25.3%25 identity in 162 aa overlap. 61.4%25 identity to HP0571. Contains Pfam match to entry PF00597 DedA%2C DedA family. Also similar to Cj1210 (27.1%25 identity in 177 aa overlap)%3B~Updated (2006) note: Five probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0928;product=putative integral membrane protein (dedA family);protein_id=CAL35048.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	861662	861730	.	+	.	ID=id-Cj0928;Note=5 probable transmembrane helices predicted for Cj0928 by TMHMM2.0 at aa 15-37%2C 44-66%2C 86-108%2C 128-150 and 165-183;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0928;part=1/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	861749	861817	.	+	.	ID=id-Cj0928;Note=5 probable transmembrane helices predicted for Cj0928 by TMHMM2.0 at aa 15-37%2C 44-66%2C 86-108%2C 128-150 and 165-183;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0928;part=2/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	861875	861943	.	+	.	ID=id-Cj0928;Note=5 probable transmembrane helices predicted for Cj0928 by TMHMM2.0 at aa 15-37%2C 44-66%2C 86-108%2C 128-150 and 165-183;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0928;part=3/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	862001	862069	.	+	.	ID=id-Cj0928;Note=5 probable transmembrane helices predicted for Cj0928 by TMHMM2.0 at aa 15-37%2C 44-66%2C 86-108%2C 128-150 and 165-183;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0928;part=4/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	862112	862168	.	+	.	ID=id-Cj0928;Note=5 probable transmembrane helices predicted for Cj0928 by TMHMM2.0 at aa 15-37%2C 44-66%2C 86-108%2C 128-150 and 165-183;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0928;part=5/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	861671	862114	.	+	.	ID=id-Cj0928-2;Note=HMMPfam hit to PF00597%2C DedA family%2C score 2.4e-10;gbkey=misc_feature;inference=protein motif:Pfam:PF00597;locus_tag=Cj0928
gi|15791399|ref|NC_002163.1|	EMBL	gene	862213	863664	.	+	.	ID=gene-Cj0929;Name=Cj0929;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0929
gi|15791399|ref|NC_002163.1|	EMBL	CDS	862213	863664	.	+	0	ID=cds-CAL35049.1;Parent=gene-Cj0929;Dbxref=EnsemblGenomes-Gn:Cj0929,EnsemblGenomes-Tr:CAL35049,GOA:Q9PP04,InterPro:IPR000819,InterPro:IPR008283,InterPro:IPR011356,InterPro:IPR023042,NCBI_GP:CAL35049.1;Name=CAL35049.1;Note=Original (2000) note: Cj0929%2C pepA%2C probable aminopeptidase%2C len: 483 aa%3B simimlar to many members of the peptidase family M17 e.g. AMPA_ECOLI aminopeptidase A/I (EC 3.4.11.1) (503 aa)%2C fasta scores%3B opt: 759 z-score: 884.5 E(): 0%2C 38.2%25 identity in 369 aa overlap. 54.5%25 identity to HP0570. Contains PS00631 Cytosol aminopeptidase signature and Pfam match to entry PF00883 Peptidase_M17%2C Cytosol aminopeptidase family%3B~Updated (2006) note: Characterised in Escherichia coli and similar to many peptidase. Putative not added to product function. Functional classification - Degradation of macromolecules - Proteins%2C peptides and glycopeptides%3B~PMID:10449417;gbkey=CDS;inference=protein motif:Prosite:PS00631;locus_tag=Cj0929;product=aminopeptidase;protein_id=CAL35049.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	862666	862713	.	+	.	ID=id-Cj0929;Note=PS00038 Myc-type%2C 'helix-loop-helix' dimerization domain signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00038;locus_tag=Cj0929
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	862693	863631	.	+	.	ID=id-Cj0929-2;Note=HMMPfam hit to PF00883%2C Cytosol aminopeptidase family%2C catalyti%2C score 5.3e-159;gbkey=misc_feature;inference=protein motif:Pfam:PF00883;locus_tag=Cj0929
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	863182	863205	.	+	.	ID=id-Cj0929-3;Note=PS00631 Cytosol aminopeptidase signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00631;locus_tag=Cj0929
gi|15791399|ref|NC_002163.1|	EMBL	gene	863661	864764	.	+	.	ID=gene-Cj0930;Name=Cj0930;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0930
gi|15791399|ref|NC_002163.1|	EMBL	CDS	863661	864764	.	+	0	ID=cds-CAL35050.1;Parent=gene-Cj0930;Dbxref=EnsemblGenomes-Gn:Cj0930,EnsemblGenomes-Tr:CAL35050,GOA:Q0P9W9,InterPro:IPR004396,InterPro:IPR006073,InterPro:IPR012675,InterPro:IPR012676,InterPro:IPR013029,InterPro:IPR023192,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9W9,NCBI_GP:CAL35050.1;Name=CAL35050.1;Note=Original (2000) note: Cj0930%2C probable GTP-binding protein%2C len: 367 aa%3B similar to many hypothetical GTP-binding proteins e.g. YYAF_BACSU (366 aa)%2C fasta scores%3B opt: 1288 z-score: 1380.9 E(): 0%2C 53.9%25 identity in 369 aa overlap. 64.9%25 identity to HP0569. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Also similar to Cj0096 (27.1%25 identity in 210 aa overlap)%3B~Updated (2006) note: Pfam domains PF01926 GTPase of unknown function and PF06071 Protein of unknown function (DUF933) were identified within CDS. No specific characterised has been carried out yet%2C so putative kept within product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj0930;product=putative GTP-binding protein;protein_id=CAL35050.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	863667	864098	.	+	.	ID=id-Cj0930;Note=HMMPfam hit to PF01926%2C GTPase of unknown function%2Cscore 2.2e-34;gbkey=misc_feature;inference=protein motif:Pfam:PF01926;locus_tag=Cj0930
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	863685	863708	.	+	.	ID=id-Cj0930-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0930
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	864507	864758	.	+	.	ID=id-Cj0930-3;Note=HMMPfam hit to PF06071%2C Protein of unknown function (DUF933)%2C score 8.1e-60;gbkey=misc_feature;inference=protein motif:Pfam:PF06071;locus_tag=Cj0930
gi|15791399|ref|NC_002163.1|	EMBL	gene	864786	866168	.	-	.	ID=gene-Cj0931c;Name=argH;gbkey=Gene;gene=argH;gene_biotype=protein_coding;locus_tag=Cj0931c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	864786	866168	.	-	0	ID=cds-CAL35051.1;Parent=gene-Cj0931c;Dbxref=EnsemblGenomes-Gn:Cj0931c,EnsemblGenomes-Tr:CAL35051,GOA:Q46104,InterPro:IPR000362,InterPro:IPR008948,InterPro:IPR009049,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,InterPro:IPR029419,NCBI_GP:CAL35051.1;Name=CAL35051.1;Note=Original (2000) note: Cj0931c%2C argH%2Cargininosuccinate lyase%2C len: 460 aa%3B 97.4%25 identical to ARLY_CAMJE argininosuccinate lyase (EC 4.3.2.1) (459 aa)%2Cand highly similar to many e.g. ARLY_CANAL argininosuccinate lyase (EC 4.3.2.1) (468 aa)%2C fasta scores%3B opt: 1337 z-score: 1518.4 E(): 0%2C 44.7%25 identity in 459 aa overlap. No Hp ortholog. Contains PS00163 Fumarate lyases signature%2C and Pfam match to entry PF00206 lyase_1%2C Lyases%3B~Updated (2006) note: Characterised in Campylobacter jejuni%2C so putative not added to product function. Functional classification - Amino acid biosynthesis -Glutamate family%3B~PMID:8144452;gbkey=CDS;gene=argH;inference=protein motif:Prosite:PS00163;locus_tag=Cj0931c;product=argininosuccinate lyase;protein_id=CAL35051.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	865260	866147	.	-	.	ID=id-Cj0931c;Note=HMMPfam hit to PF00206%2C Lyase%2C score 5.1e-88;gbkey=misc_feature;gene=argH;inference=protein motif:Pfam:PF00206;locus_tag=Cj0931c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	865308	865337	.	-	.	ID=id-Cj0931c-2;Note=PS00163 Fumarate lyases signature;gbkey=misc_feature;gene=argH;inference=protein motif:Prosite:PS00163;locus_tag=Cj0931c
gi|15791399|ref|NC_002163.1|	EMBL	gene	866178	867752	.	-	.	ID=gene-Cj0932c;Name=pckA;gbkey=Gene;gene=pckA;gene_biotype=protein_coding;locus_tag=Cj0932c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	866178	867752	.	-	0	ID=cds-CAL35052.1;Parent=gene-Cj0932c;Dbxref=EnsemblGenomes-Gn:Cj0932c,EnsemblGenomes-Tr:CAL35052,GOA:Q9PP01,InterPro:IPR001272,InterPro:IPR008210,InterPro:IPR013035,InterPro:IPR015994,NCBI_GP:CAL35052.1;Name=CAL35052.1;Note=Original (2000) note: Cj0932c%2C pckA%2C probable phosphoenolpyruvate carboxykinase (ATP)%2C len: 524 aa%3B highly similar to many e.g. PPCK_ECOLI phosphoenolpyruvate carboxykinase (ATP) (EC 4.1.1.49) (540 aa)%2C fasta scores%3B opt: 1979 z-score: 2341.3 E(): 0%2C 57.0%25 identity in 535 aa overlap. No Hp match. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature%2C and Pfam match to entry PF01293 PEPCK_ATP%2C Phosphoenolpyruvate carboxykinase (ATP)%3B~Updated (2006) note: Characterised in Esherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Central intermediary metabolism - Gluconeogenesis%3B~PMID:8393005;gbkey=CDS;gene=pckA;inference=protein motif:Prosite:PS00532;locus_tag=Cj0932c;product=phosphoenolpyruvate carboxykinase (ATP);protein_id=CAL35052.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	866322	867716	.	-	.	ID=id-Cj0932c;Note=HMMPfam hit to PF01293%2C Phosphoenolpyruvate carboxykinase%2C score 1.7e-302;gbkey=misc_feature;gene=pckA;inference=protein motif:Pfam:PF01293;locus_tag=Cj0932c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	866970	867017	.	-	.	ID=id-Cj0932c-2;Note=PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature;gbkey=misc_feature;gene=pckA;inference=protein motif:Prosite:PS00532;locus_tag=Cj0932c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	867045	867068	.	-	.	ID=id-Cj0932c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=pckA;inference=protein motif:Prosite:PS00017;locus_tag=Cj0932c
gi|15791399|ref|NC_002163.1|	EMBL	gene	867765	869564	.	-	.	ID=gene-Cj0933c;Name=pycB;gbkey=Gene;gene=pycB;gene_biotype=protein_coding;locus_tag=Cj0933c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	867765	869564	.	-	0	ID=cds-CAL35053.1;Parent=gene-Cj0933c;Dbxref=EnsemblGenomes-Gn:Cj0933c,EnsemblGenomes-Tr:CAL35053,GOA:Q0P9W6,InterPro:IPR000089,InterPro:IPR000891,InterPro:IPR001882,InterPro:IPR003379,InterPro:IPR011053,InterPro:IPR013785,UniProtKB/TrEMBL:Q0P9W6,NCBI_GP:CAL35053.1;Name=CAL35053.1;Note=Original (2000) note: Cj0933c%2C pycB%2C possible possible pyruvate carboxylase B subunit%2C len: 599 aa%3B similar to TR:O27179 (EMBL:AE000942) Methanobacterium thermoautotrophicum characterised pyruvate carboxylase B (EC 6.4.1.1) (568 aa)%2C fasta scores%3B opt: 425 z-score: 482.7 E(): 1.4e-19%2C 29.1%25 identity in 601 aa overlap. Also similar to other biotin-requiring decarboxlases e.g. DCOA_SALTY oxaloacetate decarboxylase alpha chain (590 aa)%2C fasta scores%3B opt: 515 z-score: 584.5 E(): 2.9e-25%2C27.3%25 identity in 605 aa overlap%2C and C-terminus of PYC1_YEAST pyruvate carboxylase 1 (1178 aa)%2C fasta scores%3B opt: 434 z-score: 488.3 E(): 6.7e-20%2C 24.2%25 identity in 631 aa overlap. No Hp match. Contains S00188 Biotin-requiring enzymes attachment site and Pfam match to entry PF00364 biotin_req_enzy%2C Biotin-requiring enzymes%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Central intermediary metabolism - Gluconeogenesis;gbkey=CDS;gene=pycB;inference=protein motif:Pfam:PF00364;locus_tag=Cj0933c;product=putative pyruvate carboxylase B subunit;protein_id=CAL35053.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	867774	867977	.	-	.	ID=id-Cj0933c;Note=HMMPfam hit to PF00364%2C Biotin-requiring enzyme%2Cscore 2e-19;gbkey=misc_feature;gene=pycB;inference=protein motif:Pfam:PF00364;locus_tag=Cj0933c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	867852	867905	.	-	.	ID=id-Cj0933c-2;Note=PS00188 Biotin-requiring enzymes attachment site;gbkey=misc_feature;gene=pycB;inference=protein motif:Prosite:PS00188;locus_tag=Cj0933c
gi|15791399|ref|NC_002163.1|	EMBL	gene	869596	870936	.	-	.	ID=gene-Cj0934c;Name=Cj0934c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0934c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	869596	870936	.	-	0	ID=cds-CAL35054.1;Parent=gene-Cj0934c;Dbxref=EnsemblGenomes-Gn:Cj0934c,EnsemblGenomes-Tr:CAL35054,GOA:Q0P9W5,InterPro:IPR000175,UniProtKB/TrEMBL:Q0P9W5,NCBI_GP:CAL35054.1;Name=CAL35054.1;Note=Original (2000) note: Cj0934c%2C probable transmembrane transport protein%2C len: 446 aa%3B similar to members of the sodium:neurotransmitter symporter family e.g. YD19_METJA hypothetical sodium-dependent transporter MJ1319 (492 aa)%2C fasta scores%3B opt: 628 z-score: 711.7 E(): 2.4e-32%2C 27.4%25 identity in 457 aa overlap. 42.6%25 identity to HP0498. Also similar to Cj0935c (51.0%25 identity in 441 aa overlap) and Cj0601c (28.2%25 identity in 454 aa overlap)%3B~Updated (2006) note: Pfam domain PF00209 Sodium:neurotransmitter symporter family identified within CDS. Also%2C eleven probable transmembrane helices predicted by TMHMM2.0. Product function modified to more specfific family member based on motif identification. No specific characterisation has been carried out%2C so putative has kept within product function. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;product=putative sodium:amino-acid symporter family protein;protein_id=CAL35054.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	869602	869670	.	-	.	ID=id-Cj0934c;Note=11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25%2C 35-57%2C 87-109%2C 133-155%2C167-189%2C 216-238%2C 251-273%2C 298-320%2C 341-363%2C 383-402 and 423-445;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;part=1/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	869731	869790	.	-	.	ID=id-Cj0934c;Note=11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25%2C 35-57%2C 87-109%2C 133-155%2C167-189%2C 216-238%2C 251-273%2C 298-320%2C 341-363%2C 383-402 and 423-445;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;part=2/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	869848	869916	.	-	.	ID=id-Cj0934c;Note=11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25%2C 35-57%2C 87-109%2C 133-155%2C167-189%2C 216-238%2C 251-273%2C 298-320%2C 341-363%2C 383-402 and 423-445;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;part=3/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	869977	870045	.	-	.	ID=id-Cj0934c;Note=11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25%2C 35-57%2C 87-109%2C 133-155%2C167-189%2C 216-238%2C 251-273%2C 298-320%2C 341-363%2C 383-402 and 423-445;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;part=4/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	870118	870186	.	-	.	ID=id-Cj0934c;Note=11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25%2C 35-57%2C 87-109%2C 133-155%2C167-189%2C 216-238%2C 251-273%2C 298-320%2C 341-363%2C 383-402 and 423-445;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;part=5/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	870223	870291	.	-	.	ID=id-Cj0934c;Note=11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25%2C 35-57%2C 87-109%2C 133-155%2C167-189%2C 216-238%2C 251-273%2C 298-320%2C 341-363%2C 383-402 and 423-445;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;part=6/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	870370	870438	.	-	.	ID=id-Cj0934c;Note=11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25%2C 35-57%2C 87-109%2C 133-155%2C167-189%2C 216-238%2C 251-273%2C 298-320%2C 341-363%2C 383-402 and 423-445;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;part=7/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	870472	870540	.	-	.	ID=id-Cj0934c;Note=11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25%2C 35-57%2C 87-109%2C 133-155%2C167-189%2C 216-238%2C 251-273%2C 298-320%2C 341-363%2C 383-402 and 423-445;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;part=8/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	870610	870678	.	-	.	ID=id-Cj0934c;Note=11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25%2C 35-57%2C 87-109%2C 133-155%2C167-189%2C 216-238%2C 251-273%2C 298-320%2C 341-363%2C 383-402 and 423-445;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;part=9/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	870766	870834	.	-	.	ID=id-Cj0934c;Note=11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25%2C 35-57%2C 87-109%2C 133-155%2C167-189%2C 216-238%2C 251-273%2C 298-320%2C 341-363%2C 383-402 and 423-445;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;part=10/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	870862	870918	.	-	.	ID=id-Cj0934c;Note=11 probable transmembrane helices predicted for Cj0934c by TMHMM2.0 at aa 7-25%2C 35-57%2C 87-109%2C 133-155%2C167-189%2C 216-238%2C 251-273%2C 298-320%2C 341-363%2C 383-402 and 423-445;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0934c;part=11/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	869608	870930	.	-	.	ID=id-Cj0934c-2;Note=HMMPfam hit to PF00209%2C Sodium:neurotransmitter symporter family%2C score 3.5e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF00209;locus_tag=Cj0934c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	870247	870279	.	-	.	ID=id-Cj0934c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0934c
gi|15791399|ref|NC_002163.1|	EMBL	gene	870949	872283	.	-	.	ID=gene-Cj0935c;Name=Cj0935c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0935c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	870949	872283	.	-	0	ID=cds-CAL35055.1;Parent=gene-Cj0935c;Dbxref=EnsemblGenomes-Gn:Cj0935c,EnsemblGenomes-Tr:CAL35055,GOA:Q0P9W4,InterPro:IPR000175,UniProtKB/TrEMBL:Q0P9W4,NCBI_GP:CAL35055.1;Name=CAL35055.1;Note=Original (2000) note: Cj0935c%2C probable transmembrane transport protein%2C len: 444 aa%3B similar to members of the sodium:neurotransmitter symporter family e.g. YG90_HAEIN hypothetical sodium-dependent transporter HI1690 (457 aa)%2C fasta scores%3B opt: 694 z-score: 771.9 E(): 0%2C 33.0%25 identity in 449 aa overlap. 40.4%25 identity to HP0497. Pfam match to entry PF00209 SNF%2CSodium:neurotransmitter symporter family. Also similar to Cj0934c (51.0%25 identity in 441 aa overlap) and Cj0601c (32.6%25 identity in 451 aa overlap)%3B~Updated (2006) note: Pfam domain PF00209 Sodium:neurotransmitter symporter family identified within CDS. Also%2C eleven probable transmembrane helices predicted by TMHMM2.0. Product function modified to more specfific family member based on motif identification. No specific characterisation has been carried out%2C so putative has kept within product function. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;product=putative sodium:amino-acid symporter family protein;protein_id=CAL35055.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	870955	871023	.	-	.	ID=id-Cj0935c;Note=11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25%2C 40-62%2C 83-105%2C 139-161%2C174-196%2C 216-238%2C 251-273%2C 299-321%2C 342-364%2C 384-401 and 421-443;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;part=1/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	871081	871134	.	-	.	ID=id-Cj0935c;Note=11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25%2C 40-62%2C 83-105%2C 139-161%2C174-196%2C 216-238%2C 251-273%2C 299-321%2C 342-364%2C 384-401 and 421-443;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;part=2/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	871192	871260	.	-	.	ID=id-Cj0935c;Note=11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25%2C 40-62%2C 83-105%2C 139-161%2C174-196%2C 216-238%2C 251-273%2C 299-321%2C 342-364%2C 384-401 and 421-443;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;part=3/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	871321	871389	.	-	.	ID=id-Cj0935c;Note=11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25%2C 40-62%2C 83-105%2C 139-161%2C174-196%2C 216-238%2C 251-273%2C 299-321%2C 342-364%2C 384-401 and 421-443;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;part=4/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	871465	871533	.	-	.	ID=id-Cj0935c;Note=11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25%2C 40-62%2C 83-105%2C 139-161%2C174-196%2C 216-238%2C 251-273%2C 299-321%2C 342-364%2C 384-401 and 421-443;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;part=5/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	871570	871638	.	-	.	ID=id-Cj0935c;Note=11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25%2C 40-62%2C 83-105%2C 139-161%2C174-196%2C 216-238%2C 251-273%2C 299-321%2C 342-364%2C 384-401 and 421-443;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;part=6/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	871696	871764	.	-	.	ID=id-Cj0935c;Note=11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25%2C 40-62%2C 83-105%2C 139-161%2C174-196%2C 216-238%2C 251-273%2C 299-321%2C 342-364%2C 384-401 and 421-443;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;part=7/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	871801	871869	.	-	.	ID=id-Cj0935c;Note=11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25%2C 40-62%2C 83-105%2C 139-161%2C174-196%2C 216-238%2C 251-273%2C 299-321%2C 342-364%2C 384-401 and 421-443;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;part=8/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	871969	872037	.	-	.	ID=id-Cj0935c;Note=11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25%2C 40-62%2C 83-105%2C 139-161%2C174-196%2C 216-238%2C 251-273%2C 299-321%2C 342-364%2C 384-401 and 421-443;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;part=9/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	872098	872166	.	-	.	ID=id-Cj0935c;Note=11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25%2C 40-62%2C 83-105%2C 139-161%2C174-196%2C 216-238%2C 251-273%2C 299-321%2C 342-364%2C 384-401 and 421-443;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;part=10/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	872209	872265	.	-	.	ID=id-Cj0935c;Note=11 probable transmembrane helices predicted for Cj0935c by TMHMM2.0 at aa 7-25%2C 40-62%2C 83-105%2C 139-161%2C174-196%2C 216-238%2C 251-273%2C 299-321%2C 342-364%2C 384-401 and 421-443;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0935c;part=11/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	870961	872268	.	-	.	ID=id-Cj0935c-2;Note=HMMPfam hit to PF00209%2C Sodium:neurotransmitter symporter family%2C score 2.2e-10;gbkey=misc_feature;inference=protein motif:Pfam:PF00209;locus_tag=Cj0935c
gi|15791399|ref|NC_002163.1|	EMBL	gene	872516	872854	.	+	.	ID=gene-Cj0936;Name=atpE;gbkey=Gene;gene=atpE;gene_biotype=protein_coding;locus_tag=Cj0936
gi|15791399|ref|NC_002163.1|	EMBL	CDS	872516	872854	.	+	0	ID=cds-CAL35056.1;Parent=gene-Cj0936;Dbxref=EnsemblGenomes-Gn:Cj0936,EnsemblGenomes-Tr:CAL35056,GOA:Q0P9W3,InterPro:IPR000454,InterPro:IPR002379,InterPro:IPR005953,InterPro:IPR020537,NCBI_GP:CAL35056.1;Name=CAL35056.1;Note=Original (2000) note: Cj0936%2C atpE%2C probable ATP synthase F0 sector C subunit%2C len: 112 aa%3B similar to e.g. ATPL_AQUAE ATP synthase C chain (EC 3.6.1.34) (100 aa)%2Cfasta scores%3B opt: 235 z-score: 280.1 E(): 2.6e-08%2C 42.9%25 identity in 105 aa overlap%2C and ATPL_ANASP (81 aa)%2C fasta scores%3B opt: 233 z-score: 279.2 E(): 3e-08%2C 48.7%25 identity in 76 aa overlap. 58.7%25 identity to HP1212. Contains PS00605 ATP synthase c subunit signature%2C and Pfam match to entry PF00137 ATP-synt_C%2C ATP synthase subunit C%2C score 79.00%2C E-value 1e-19%3B~Updated (2006) note: Three probable transmembrane helices predicted by TMHMM2.0. Characterisation within bacterial Anabaena species and others with acceptable identity scores. Appropriate motifs present. Putative not added to product fucntion. Functional classification -Energy metabolism - ATP-proton motive force%3B~PMID:1655755%2C PMID:2196429%2C PMID:2900236;gbkey=CDS;gene=atpE;inference=protein motif:TMHMM:2.0;locus_tag=Cj0936;product=ATP synthase F0 sector C subunit;protein_id=CAL35056.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	872528	872587	.	+	.	ID=id-Cj0936;Note=3 probable transmembrane helices predicted for Cj0936 by TMHMM2.0 at aa 5-24%2C 39-61 and 82-104;gbkey=misc_feature;gene=atpE;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0936;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	872630	872698	.	+	.	ID=id-Cj0936;Note=3 probable transmembrane helices predicted for Cj0936 by TMHMM2.0 at aa 5-24%2C 39-61 and 82-104;gbkey=misc_feature;gene=atpE;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0936;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	872759	872827	.	+	.	ID=id-Cj0936;Note=3 probable transmembrane helices predicted for Cj0936 by TMHMM2.0 at aa 5-24%2C 39-61 and 82-104;gbkey=misc_feature;gene=atpE;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0936;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	872621	872830	.	+	.	ID=id-Cj0936-2;Note=HMMPfam hit to PF00137%2C ATP synthase subunit C%2Cscore 3.8e-19;gbkey=misc_feature;gene=atpE;inference=protein motif:Pfam:PF00137;locus_tag=Cj0936
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	872717	872782	.	+	.	ID=id-Cj0936-3;Note=PS00605 ATP synthase c subunit signature;gbkey=misc_feature;gene=atpE;inference=protein motif:Prosite:PS00605;locus_tag=Cj0936
gi|15791399|ref|NC_002163.1|	EMBL	gene	872889	872974	.	+	.	ID=gene-tRNA-Leu-2;Name=tRNA-Leu;gbkey=Gene;gene=tRNA-Leu;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	872889	872974	.	+	.	ID=rna-tRNA-Leu-2;Parent=gene-tRNA-Leu-2;Note=tRNA Leu anticodon GAG%2C Cove score 55.92;gbkey=tRNA;gene=tRNA-Leu;product=tRNA-Leu
gi|15791399|ref|NC_002163.1|	EMBL	exon	872889	872974	.	+	.	ID=exon-tRNA-Leu-2-1;Parent=rna-tRNA-Leu-2;Note=tRNA Leu anticodon GAG%2C Cove score 55.92;gbkey=tRNA;gene=tRNA-Leu;product=tRNA-Leu
gi|15791399|ref|NC_002163.1|	EMBL	gene	873171	874082	.	+	.	ID=gene-Cj0937;Name=Cj0937;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0937
gi|15791399|ref|NC_002163.1|	EMBL	CDS	873171	874082	.	+	0	ID=cds-CAL35057.1;Parent=gene-Cj0937;Dbxref=EnsemblGenomes-Gn:Cj0937,EnsemblGenomes-Tr:CAL35057,GOA:Q0P9W2,InterPro:IPR004776,UniProtKB/TrEMBL:Q0P9W2,NCBI_GP:CAL35057.1;Name=CAL35057.1;Note=Original (2000) note: Cj0937%2C probable integral membrane protein%2C len: 303 aa%3B simimlar to hypothetical membrane proteins e.g. YA31_METJA MJ1031 (308 aa)%2C fasta scores%3B opt: 379 z-score: 446.4 E(): 1.4e-17%2C 26.1%25 identity in 318 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03547 Auxin Efflux Carrier identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. PProteins in this group are mostly uncharacterised and of unknown function. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0937;product=putative integral membrane protein;protein_id=CAL35057.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873174	874067	.	+	.	ID=id-Cj0937;Note=HMMPfam hit to PF03547%2C Auxin Efflux Carrier%2C score 1.1e-81;gbkey=misc_feature;inference=protein motif:Pfam:PF03547;locus_tag=Cj0937
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873180	873248	.	+	.	ID=id-Cj0937-2;Note=10 probable transmembrane helices predicted for Cj0937 by TMHMM2.0 at aa 4-26%2C 31-48%2C 58-80%2C 93-115%2C125-147%2C 168-187%2C 192-214%2C 221-243%2C 253-271 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0937;part=1/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873261	873314	.	+	.	ID=id-Cj0937-2;Note=10 probable transmembrane helices predicted for Cj0937 by TMHMM2.0 at aa 4-26%2C 31-48%2C 58-80%2C 93-115%2C125-147%2C 168-187%2C 192-214%2C 221-243%2C 253-271 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0937;part=2/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873342	873410	.	+	.	ID=id-Cj0937-2;Note=10 probable transmembrane helices predicted for Cj0937 by TMHMM2.0 at aa 4-26%2C 31-48%2C 58-80%2C 93-115%2C125-147%2C 168-187%2C 192-214%2C 221-243%2C 253-271 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0937;part=3/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873447	873515	.	+	.	ID=id-Cj0937-2;Note=10 probable transmembrane helices predicted for Cj0937 by TMHMM2.0 at aa 4-26%2C 31-48%2C 58-80%2C 93-115%2C125-147%2C 168-187%2C 192-214%2C 221-243%2C 253-271 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0937;part=4/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873543	873611	.	+	.	ID=id-Cj0937-2;Note=10 probable transmembrane helices predicted for Cj0937 by TMHMM2.0 at aa 4-26%2C 31-48%2C 58-80%2C 93-115%2C125-147%2C 168-187%2C 192-214%2C 221-243%2C 253-271 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0937;part=5/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873672	873731	.	+	.	ID=id-Cj0937-2;Note=10 probable transmembrane helices predicted for Cj0937 by TMHMM2.0 at aa 4-26%2C 31-48%2C 58-80%2C 93-115%2C125-147%2C 168-187%2C 192-214%2C 221-243%2C 253-271 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0937;part=6/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873744	873812	.	+	.	ID=id-Cj0937-2;Note=10 probable transmembrane helices predicted for Cj0937 by TMHMM2.0 at aa 4-26%2C 31-48%2C 58-80%2C 93-115%2C125-147%2C 168-187%2C 192-214%2C 221-243%2C 253-271 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0937;part=7/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873831	873899	.	+	.	ID=id-Cj0937-2;Note=10 probable transmembrane helices predicted for Cj0937 by TMHMM2.0 at aa 4-26%2C 31-48%2C 58-80%2C 93-115%2C125-147%2C 168-187%2C 192-214%2C 221-243%2C 253-271 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0937;part=8/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873927	873983	.	+	.	ID=id-Cj0937-2;Note=10 probable transmembrane helices predicted for Cj0937 by TMHMM2.0 at aa 4-26%2C 31-48%2C 58-80%2C 93-115%2C125-147%2C 168-187%2C 192-214%2C 221-243%2C 253-271 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0937;part=9/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	874002	874070	.	+	.	ID=id-Cj0937-2;Note=10 probable transmembrane helices predicted for Cj0937 by TMHMM2.0 at aa 4-26%2C 31-48%2C 58-80%2C 93-115%2C125-147%2C 168-187%2C 192-214%2C 221-243%2C 253-271 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj0937;part=10/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873351	873383	.	+	.	ID=id-Cj0937-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0937
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	873438	873470	.	+	.	ID=id-Cj0937-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0937
gi|15791399|ref|NC_002163.1|	EMBL	gene	874090	877602	.	-	.	ID=gene-Cj0938c;Name=aas;gbkey=Gene;gene=aas;gene_biotype=protein_coding;locus_tag=Cj0938c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	874090	877602	.	-	0	ID=cds-CAL35058.1;Parent=gene-Cj0938c;Dbxref=EnsemblGenomes-Gn:Cj0938c,EnsemblGenomes-Tr:CAL35058,GOA:Q0P9W1,InterPro:IPR000873,InterPro:IPR002123,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020845,UniProtKB/TrEMBL:Q0P9W1,NCBI_GP:CAL35058.1;Name=CAL35058.1;Note=Original (2000) note: Cj0938c%2C aas%2C probable 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase%2C len: 1170 aa%3B contains 2 domains%3B C-terminal domain (420 aa to end) is simlar to the bifunctional enzyme AAS_ECOLI 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase (719 aa)%2C fasta scores%3B opt: 438 z-score: 471.6 E(): 5.7e-19%2C 31.0%25 identity in 762 aa overlap%3B N-terminal domain contains approx 12 transmembrane domains%2C and is similar to the hypothetical membrane protein immediately upstreram of the E. coli aas%3B YGED_ECOLI%3B wublastp scores E%3D 3.5e-12%2C 25%25 in 192 aa overlap and 31%25 identity in 146 aa overlap. No Hp match. Contains PS00455 Putative AMP-binding domain signature%2C and Pfam match to entry PF00501 AMP-binding%2CAMP-binding enzyme%3B~Updated (2006) note: Now contains additional Pfam domains in centre of CDS%2C PF01553 Acyltransferase and N-terminal domain PF07690 Major Facilitator Superfamily. Characterisation has been carried out within Escherichia coli%2C however%2C sequence alignment is only partial. Putative kept within product function. Functional classification - Fatty acid biosynthesis%3B~PMID:10733890;gbkey=CDS;gene=aas;inference=protein motif:Prosite:PS00455;locus_tag=Cj0938c;product=putative 2-acylglycerophosphoethanolamine acyltransferase / acyl-acyl carrier protein synthetase;protein_id=CAL35058.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	875200	875268	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=1/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	876364	876432	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=2/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	876442	876510	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=3/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	876547	876615	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=4/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	876625	876693	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=5/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	876718	876786	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=6/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	876829	876888	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=7/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	877000	877068	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=8/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	877111	877179	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=9/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	877216	877284	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=10/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	877294	877353	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=11/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	877390	877458	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=12/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	877516	877584	.	-	.	ID=id-Cj0938c;Note=13 probable transmembrane helices predicted for Cj0938c by TMHMM2.0 at aa 7-29%2C 49-71%2C 84-103%2C 107-129%2C142-164%2C 179-201%2C 239-258%2C 273-295%2C 304-326%2C 330-352%2C365-387%2C 391-413 and 779-801;gbkey=misc_feature;gene=aas;inference=protein motif:TMHMM:2.0;locus_tag=Cj0938c;part=13/13
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	874306	875652	.	-	.	ID=id-Cj0938c-2;Note=HMMPfam hit to PF00501%2C AMP-binding enzyme%2C score 1e-63;gbkey=misc_feature;gene=aas;inference=protein motif:Pfam:PF00501;locus_tag=Cj0938c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	875140	875175	.	-	.	ID=id-Cj0938c-3;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=aas;inference=protein motif:Prosite:PS00455;locus_tag=Cj0938c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	875923	876306	.	-	.	ID=id-Cj0938c-4;Note=HMMPfam hit to PF01553%2C Acyltransferase%2C score 3.3e-22;gbkey=misc_feature;gene=aas;inference=protein motif:Pfam:PF01553;locus_tag=Cj0938c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	876439	877560	.	-	.	ID=id-Cj0938c-5;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 3e-18;gbkey=misc_feature;gene=aas;inference=protein motif:Pfam:PF07690;locus_tag=Cj0938c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	877021	877053	.	-	.	ID=id-Cj0938c-6;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=aas;inference=protein motif:Prosite:PS00013;locus_tag=Cj0938c
gi|15791399|ref|NC_002163.1|	EMBL	gene	877647	878027	.	-	.	ID=gene-Cj0939c;Name=Cj0939c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0939c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	877647	878027	.	-	0	ID=cds-CAL35059.1;Parent=gene-Cj0939c;Dbxref=EnsemblGenomes-Gn:Cj0939c,EnsemblGenomes-Tr:CAL35059,UniProtKB/TrEMBL:Q0P9W0,NCBI_GP:CAL35059.1;Name=CAL35059.1;Note=Original (2000) note: Cj0939c%2C unknown%2C len: 126 aa%3B 29.5%25 identity to HP1065. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0939c;product=hypothetical protein Cj0939c;protein_id=CAL35059.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	878095	878171	.	-	.	ID=gene-tRNA-Asp;Name=tRNA-Asp;gbkey=Gene;gene=tRNA-Asp;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	878095	878171	.	-	.	ID=rna-tRNA-Asp;Parent=gene-tRNA-Asp;Note=tRNA Asp anticodon GTC%2C Cove score 91.78;gbkey=tRNA;gene=tRNA-Asp;product=tRNA-Asp
gi|15791399|ref|NC_002163.1|	EMBL	exon	878095	878171	.	-	.	ID=exon-tRNA-Asp-1;Parent=rna-tRNA-Asp;Note=tRNA Asp anticodon GTC%2C Cove score 91.78;gbkey=tRNA;gene=tRNA-Asp;product=tRNA-Asp
gi|15791399|ref|NC_002163.1|	EMBL	gene	878223	878298	.	-	.	ID=gene-tRNA-Val;Name=tRNA-Val;gbkey=Gene;gene=tRNA-Val;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	878223	878298	.	-	.	ID=rna-tRNA-Val;Parent=gene-tRNA-Val;Note=tRNA Val anticodon TAC%2C Cove score 90.03;gbkey=tRNA;gene=tRNA-Val;product=tRNA-Val
gi|15791399|ref|NC_002163.1|	EMBL	exon	878223	878298	.	-	.	ID=exon-tRNA-Val-1;Parent=rna-tRNA-Val;Note=tRNA Val anticodon TAC%2C Cove score 90.03;gbkey=tRNA;gene=tRNA-Val;product=tRNA-Val
gi|15791399|ref|NC_002163.1|	EMBL	gene	878400	878475	.	-	.	ID=gene-tRNA-Lys;Name=tRNA-Lys;gbkey=Gene;gene=tRNA-Lys;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	878400	878475	.	-	.	ID=rna-tRNA-Lys;Parent=gene-tRNA-Lys;Note=tRNA Lys anticodon TTT%2C Cove score 81.97;gbkey=tRNA;gene=tRNA-Lys;product=tRNA-Lys
gi|15791399|ref|NC_002163.1|	EMBL	exon	878400	878475	.	-	.	ID=exon-tRNA-Lys-1;Parent=rna-tRNA-Lys;Note=tRNA Lys anticodon TTT%2C Cove score 81.97;gbkey=tRNA;gene=tRNA-Lys;product=tRNA-Lys
gi|15791399|ref|NC_002163.1|	EMBL	gene	878480	878556	.	-	.	ID=gene-tRNA-Asp-2;Name=tRNA-Asp;gbkey=Gene;gene=tRNA-Asp;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	878480	878556	.	-	.	ID=rna-tRNA-Asp-2;Parent=gene-tRNA-Asp-2;Note=tRNA Asp anticodon GTC%2C Cove score 91.78;gbkey=tRNA;gene=tRNA-Asp;product=tRNA-Asp
gi|15791399|ref|NC_002163.1|	EMBL	exon	878480	878556	.	-	.	ID=exon-tRNA-Asp-2-1;Parent=rna-tRNA-Asp-2;Note=tRNA Asp anticodon GTC%2C Cove score 91.78;gbkey=tRNA;gene=tRNA-Asp;product=tRNA-Asp
gi|15791399|ref|NC_002163.1|	EMBL	gene	878608	878683	.	-	.	ID=gene-tRNA-Val-2;Name=tRNA-Val;gbkey=Gene;gene=tRNA-Val;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	878608	878683	.	-	.	ID=rna-tRNA-Val-2;Parent=gene-tRNA-Val-2;Note=tRNA Val anticodon TAC%2C Cove score 90.03;gbkey=tRNA;gene=tRNA-Val;product=tRNA-Val
gi|15791399|ref|NC_002163.1|	EMBL	exon	878608	878683	.	-	.	ID=exon-tRNA-Val-2-1;Parent=rna-tRNA-Val-2;Note=tRNA Val anticodon TAC%2C Cove score 90.03;gbkey=tRNA;gene=tRNA-Val;product=tRNA-Val
gi|15791399|ref|NC_002163.1|	EMBL	gene	878691	878766	.	-	.	ID=gene-tRNA-Lys-2;Name=tRNA-Lys;gbkey=Gene;gene=tRNA-Lys;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	878691	878766	.	-	.	ID=rna-tRNA-Lys-2;Parent=gene-tRNA-Lys-2;Note=tRNA Lys anticodon TTT%2C Cove score 81.97;gbkey=tRNA;gene=tRNA-Lys;product=tRNA-Lys
gi|15791399|ref|NC_002163.1|	EMBL	exon	878691	878766	.	-	.	ID=exon-tRNA-Lys-2-1;Parent=rna-tRNA-Lys-2;Note=tRNA Lys anticodon TTT%2C Cove score 81.97;gbkey=tRNA;gene=tRNA-Lys;product=tRNA-Lys
gi|15791399|ref|NC_002163.1|	EMBL	gene	878828	879613	.	-	.	ID=gene-Cj0940c;Name=glnP;gbkey=Gene;gene=glnP;gene_biotype=protein_coding;locus_tag=Cj0940c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	878828	879613	.	-	0	ID=cds-CAL35060.1;Parent=gene-Cj0940c;Dbxref=EnsemblGenomes-Gn:Cj0940c,EnsemblGenomes-Tr:CAL35060,GOA:Q0P9V9,InterPro:IPR000515,InterPro:IPR010065,UniProtKB/TrEMBL:Q0P9V9,NCBI_GP:CAL35060.1;Name=CAL35060.1;Note=Original (2000) note: Cj0940c%2C glnP%2C probable glutamine transport system permease%2C len: 261 aa%3B similar to many e.g. GLNP_ECOLI glutamine transport system permease protein (219 aa)%2C fasta scores%3B opt: 414 z-score: 509.0 E(): 4.7e-21%2C 37.5%25 identity in 216 aa overlap. No Hp otholog. Contains PS00402 Binding-protein-dependent transport systems inner membrane comp sign.%2C and Pfam match to entry PF00528 BPD_transp%2CBinding-protein-dependent transport systems inner membrane component%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Not fully characterised%2C so putative kept in product function. Functional classification - Transport/binding proteins - Amino acids and amines;gbkey=CDS;gene=glnP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0940c;product=putative glutamine transport system permease;protein_id=CAL35060.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	878849	878917	.	-	.	ID=id-Cj0940c;Note=6 probable transmembrane helices predicted for Cj0940c by TMHMM2.0 at aa 26-48%2C 68-90%2C 102-124%2C 134-156%2C177-199 and 233-255;gbkey=misc_feature;gene=glnP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0940c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	879017	879085	.	-	.	ID=id-Cj0940c;Note=6 probable transmembrane helices predicted for Cj0940c by TMHMM2.0 at aa 26-48%2C 68-90%2C 102-124%2C 134-156%2C177-199 and 233-255;gbkey=misc_feature;gene=glnP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0940c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	879146	879214	.	-	.	ID=id-Cj0940c;Note=6 probable transmembrane helices predicted for Cj0940c by TMHMM2.0 at aa 26-48%2C 68-90%2C 102-124%2C 134-156%2C177-199 and 233-255;gbkey=misc_feature;gene=glnP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0940c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	879242	879310	.	-	.	ID=id-Cj0940c;Note=6 probable transmembrane helices predicted for Cj0940c by TMHMM2.0 at aa 26-48%2C 68-90%2C 102-124%2C 134-156%2C177-199 and 233-255;gbkey=misc_feature;gene=glnP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0940c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	879344	879412	.	-	.	ID=id-Cj0940c;Note=6 probable transmembrane helices predicted for Cj0940c by TMHMM2.0 at aa 26-48%2C 68-90%2C 102-124%2C 134-156%2C177-199 and 233-255;gbkey=misc_feature;gene=glnP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0940c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	879470	879538	.	-	.	ID=id-Cj0940c;Note=6 probable transmembrane helices predicted for Cj0940c by TMHMM2.0 at aa 26-48%2C 68-90%2C 102-124%2C 134-156%2C177-199 and 233-255;gbkey=misc_feature;gene=glnP;inference=protein motif:TMHMM:2.0;locus_tag=Cj0940c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	878831	879436	.	-	.	ID=id-Cj0940c-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 4.8e-27;gbkey=misc_feature;gene=glnP;inference=protein motif:Pfam:PF00528;locus_tag=Cj0940c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	879062	879148	.	-	.	ID=id-Cj0940c-3;Note=PS00402 Binding-protein-dependent transport systems inner membrane comp. sign;gbkey=misc_feature;gene=glnP;inference=protein motif:Prosite:PS00402;locus_tag=Cj0940c
gi|15791399|ref|NC_002163.1|	EMBL	gene	879636	880841	.	-	.	ID=gene-Cj0941c;Name=Cj0941c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0941c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	879636	880841	.	-	0	ID=cds-CAL35061.1;Parent=gene-Cj0941c;Dbxref=EnsemblGenomes-Gn:Cj0941c,EnsemblGenomes-Tr:CAL35061,GOA:Q0P9V8,InterPro:IPR003838,InterPro:IPR025857,UniProtKB/TrEMBL:Q0P9V8,NCBI_GP:CAL35061.1;Name=CAL35061.1;Note=Original (2000) note: Cj0941c%2C probable integral membrane protein%2C len: 401 aa%3B similar to many hypothetical membrane proteins e.g. YCFU_ECOLI(399 aa)%2Cfasta scores%3B opt: 414 z-score: 478.9 E(): 2.2e-19%2C 22.1%25 identity in 408 aa overlap. 53.5%25 identity to HP0787%3B~Updated (2006) note: Pfam domain PF02687 Predicted permease identified within CDS. Also%2C four probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member based on motif match. Not specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0941c;product=putative permease;protein_id=CAL35061.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	879690	879758	.	-	.	ID=id-Cj0941c;Note=4 probable transmembrane helices predicted for Cj0941c by TMHMM2.0 at aa 21-43%2C 266-288%2C 314-336 and 362-384;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0941c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	879834	879902	.	-	.	ID=id-Cj0941c;Note=4 probable transmembrane helices predicted for Cj0941c by TMHMM2.0 at aa 21-43%2C 266-288%2C 314-336 and 362-384;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0941c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	879978	880046	.	-	.	ID=id-Cj0941c;Note=4 probable transmembrane helices predicted for Cj0941c by TMHMM2.0 at aa 21-43%2C 266-288%2C 314-336 and 362-384;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0941c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	880713	880781	.	-	.	ID=id-Cj0941c;Note=4 probable transmembrane helices predicted for Cj0941c by TMHMM2.0 at aa 21-43%2C 266-288%2C 314-336 and 362-384;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0941c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	879660	880187	.	-	.	ID=id-Cj0941c-2;Note=HMMPfam hit to PF02687%2C Predicted permease%2C score 7.2e-44;gbkey=misc_feature;inference=protein motif:Pfam:PF02687;locus_tag=Cj0941c
gi|15791399|ref|NC_002163.1|	EMBL	gene	880838	883426	.	-	.	ID=gene-Cj0942c;Name=secA;gbkey=Gene;gene=secA;gene_biotype=protein_coding;locus_tag=Cj0942c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	880838	883426	.	-	0	ID=cds-CAL35062.1;Parent=gene-Cj0942c;Dbxref=EnsemblGenomes-Gn:Cj0942c,EnsemblGenomes-Tr:CAL35062,GOA:Q0P9V7,InterPro:IPR000185,InterPro:IPR001650,InterPro:IPR004027,InterPro:IPR011115,InterPro:IPR011116,InterPro:IPR011130,InterPro:IPR014018,InterPro:IPR027417,NCBI_GP:CAL35062.1;Name=CAL35062.1;Note=Original (2000) note: Cj0942c%2C secA%2C preprotein translocase SECA subunit%2C len: 862 aa%3B highly similar to many e.g. SECA_ECOLI preprotein translocase SECA subunit (901 aa)%2C fasta scores%3B opt: 1860 z-score: 1999.2 E(): 0%2C49.5%25 identity in 911 aa overlap. 62.8%25 identity to HP0786. Contains Pfam match to entry PF01043 SecA_protein%2CSecA protein%2C amino terminal region%3B~Updated (2006) note: Additional Pfam domains PF02810 SEC-C motif%2C PF07516 SecA Wing and Scaffold domain%2C PF00271 Helicase conserved C-terminal domain and PF07517 SecA DEAD-like domain were all identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Protein and peptide secretion%3B~PMID:7557338%2C PMID:15063851;gbkey=CDS;gene=secA;inference=protein motif:Pfam:PF07517;locus_tag=Cj0942c;product=preprotein translocase SecA subunit;protein_id=CAL35062.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	880862	880924	.	-	.	ID=id-Cj0942c;Note=HMMPfam hit to PF02810%2C SEC-C motif%2C score 3.7e-09;gbkey=misc_feature;gene=secA;inference=protein motif:Pfam:PF02810;locus_tag=Cj0942c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	881051	881683	.	-	.	ID=id-Cj0942c-2;Note=HMMPfam hit to PF07516%2C SecA Wing and Scaffold domain%2C score 2.8e-73;gbkey=misc_feature;gene=secA;inference=protein motif:Pfam:PF07516;locus_tag=Cj0942c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	881795	882043	.	-	.	ID=id-Cj0942c-3;Note=HMMPfam hit to PF00271%2C Helicase conserved C-terminal domain%2C score 0.002;gbkey=misc_feature;gene=secA;inference=protein motif:Pfam:PF00271;locus_tag=Cj0942c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	882239	883411	.	-	.	ID=id-Cj0942c-4;Note=HMMPfam hit to PF07517%2C SecA DEAD-like domain%2Cscore 5.8e-153;gbkey=misc_feature;gene=secA;inference=protein motif:Pfam:PF07517;locus_tag=Cj0942c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	882371	882739	.	-	.	ID=id-Cj0942c-5;Note=HMMPfam hit to PF01043%2C SecA preprotein cross-linking domain%2C score 6.2e-69;gbkey=misc_feature;gene=secA;inference=protein motif:Pfam:PF01043;locus_tag=Cj0942c
gi|15791399|ref|NC_002163.1|	EMBL	gene	883526	884035	.	+	.	ID=gene-Cj0943;Name=lolA;gbkey=Gene;gene=lolA;gene_biotype=protein_coding;locus_tag=Cj0943
gi|15791399|ref|NC_002163.1|	EMBL	CDS	883526	884035	.	+	0	ID=cds-CAL35063.1;Parent=gene-Cj0943;Dbxref=EnsemblGenomes-Gn:Cj0943,EnsemblGenomes-Tr:CAL35063,GOA:Q9PNZ0,InterPro:IPR004564,InterPro:IPR029046,NCBI_GP:CAL35063.1;Name=CAL35063.1;Note=Original (2000) note: Cj0943%2C probable periplasmic protein%2C len: 169 aa%3B 29.1%25 identity to HP0785. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF03548 Outer membrane lipoprotein carrier protein LolA domain identified within CDS. Product function modified to more specific family member. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:16354671;gbkey=CDS;gene=lolA;inference=protein motif:Pfam:PF03548;locus_tag=Cj0943;product=putative outer-membrane lipoprotein carrier protein precursor;protein_id=CAL35063.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	884032	884766	.	-	.	ID=gene-Cj0944c;Name=Cj0944c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0944c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	884032	884766	.	-	0	ID=cds-CAL35064.1;Parent=gene-Cj0944c;Dbxref=EnsemblGenomes-Gn:Cj0944c,EnsemblGenomes-Tr:CAL35064,UniProtKB/TrEMBL:Q0P9V5,NCBI_GP:CAL35064.1;Name=CAL35064.1;Note=Original (2000) note: Cj0944c%2C probable periplasmic protein%2C len: 244 aa%3B no Hp match%3B~Updated (2006) note: Paper identified linking protein to glycoprotein. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:12186869;gbkey=CDS;locus_tag=Cj0944c;product=putative periplasmic protein;protein_id=CAL35064.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	884776	886119	.	-	.	ID=gene-Cj0945c;Name=Cj0945c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0945c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	884776	886119	.	-	0	ID=cds-CAL35065.1;Parent=gene-Cj0945c;Dbxref=EnsemblGenomes-Gn:Cj0945c,EnsemblGenomes-Tr:CAL35065,GOA:Q0P9V4,InterPro:IPR003593,InterPro:IPR010285,InterPro:IPR027417,InterPro:IPR027785,NCBI_GP:CAL35065.1;Name=CAL35065.1;Note=Original (2000) note: Cj0945c%2C possible helicase%2Clen: 447 aa%3B similar to the C-terminus of members of the eukaryotic RAD3/XPD helicase subfamily%2C e.g. PIF1_YEAST mitochondrial DNA repair and recombination protein (857 aa)%2C fasta scores%3B opt: 193 z-score: 220.7 E(): 5.4e-05%2C29.6%25 identity in 324 aa overlap. No Hp match. Contains S00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair;gbkey=CDS;locus_tag=Cj0945c;product=putative helicase;protein_id=CAL35065.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	885931	885999	.	-	.	ID=id-Cj0945c;Note=1 probable transmembrane helix predicted for Cj0945c by TMHMM2.0 at aa 41-63;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0945c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	886045	886068	.	-	.	ID=id-Cj0945c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0945c
gi|15791399|ref|NC_002163.1|	EMBL	gene	886168	887514	.	+	.	ID=gene-Cj0946;Name=Cj0946;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0946
gi|15791399|ref|NC_002163.1|	EMBL	CDS	886168	887514	.	+	0	ID=cds-CAL35066.1;Parent=gene-Cj0946;Dbxref=EnsemblGenomes-Gn:Cj0946,EnsemblGenomes-Tr:CAL35066,InterPro:IPR000064,InterPro:IPR025606,InterPro:IPR026864,InterPro:IPR027017,UniProtKB/TrEMBL:Q0P9V3,NCBI_GP:CAL35066.1;Name=CAL35066.1;Note=Original (2000) note: Cj0946%2C probable lipoprotein%2Clen: 448 aa%3B 29.0%25 identity to HP0087. Contains probable N-terminal signal sequence with appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%2C and Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0946;product=putative lipoprotein;protein_id=CAL35066.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	886186	886218	.	+	.	ID=id-Cj0946;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0946
gi|15791399|ref|NC_002163.1|	EMBL	gene	887526	888398	.	-	.	ID=gene-Cj0947c;Name=Cj0947c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0947c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	887526	888398	.	-	0	ID=cds-CAL35067.1;Parent=gene-Cj0947c;Dbxref=EnsemblGenomes-Gn:Cj0947c,EnsemblGenomes-Tr:CAL35067,GOA:Q0P9V2,InterPro:IPR003010,UniProtKB/TrEMBL:Q0P9V2,NCBI_GP:CAL35067.1;Name=CAL35067.1;Note=Original (2000) note: Cj0947c%2C probable hydrolase%2Clen: 290 aa%3B similar to prokaryotic hypothetical hydrolases%2C and to e.g. BUP_RAT beta-ureidopropionase (393 aa)%2C fasta scores%3B opt: 319 z-score: 392.0 E(): 1.6e-14%2C26.0%25 identity in 304 aa overlap. 60.9%25 identity to HP0757%3B~Updated (2006) note: Pfam domain PF00795 Carbon-nitrogen hydrolase identified within CDS. Product modified to more specific family member based on motif match. Specific characterisation has been carried out yet%2Cso putative kept in product funciton. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF00795;locus_tag=Cj0947c;product=putative carbon-nitrogen hydrolase;protein_id=CAL35067.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	887877	888395	.	-	.	ID=id-Cj0947c;Note=HMMPfam hit to PF00795%2C Carbon-nitrogen hydrolase%2Cscore 2.2e-59;gbkey=misc_feature;inference=protein motif:Pfam:PF00795;locus_tag=Cj0947c
gi|15791399|ref|NC_002163.1|	EMBL	gene	888395	889282	.	-	.	ID=gene-Cj0948c;Name=Cj0948c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0948c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	888395	889282	.	-	0	ID=cds-CAL35068.1;Parent=gene-Cj0948c;Dbxref=EnsemblGenomes-Gn:Cj0948c,EnsemblGenomes-Tr:CAL35068,GOA:Q0P9V1,InterPro:IPR002524,InterPro:IPR027469,InterPro:IPR027470,UniProtKB/TrEMBL:Q0P9V1,NCBI_GP:CAL35068.1;Name=CAL35068.1;Note=Original (2000) note: Cj0948c%2C possible transmembrane transport protein%2C len: 295 aa%3B similar to members of the UPF0018 family%2C e.g. YIIP_ECOLI (300 aa)%2Cfasta scores%3B opt: 564 z-score: 671.3 E(): 4.3e-30%2C 31.8%25 identity in 292 aa overlap%2C and to cation efflux proteins e.g. CZCD_ALCEU cation efflux system protein CZCD (316 aa)%2C fasta scores%3B opt: 262 z-score: 316.4 E(): 2.5e-10%2C22.3%25 identity in 273 aa overlap. No Hp match. Also similar to Cj1163c (24.7%25 identity in 279 aa overlap)%3B~Updated (2006) note: Pfam domain PF01545 Cation efflux family identified within CDS. Six probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterisation within more than one species e.g. Klebsiella pneumoniae and some Escherichia coli. Putative kept in product function. Functional classification - Drug/analogue sensitivity%3B~PMID:12019132%2C PMID:15549269;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0948c;product=putative cation efflux family protein;protein_id=CAL35068.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	888701	888769	.	-	.	ID=id-Cj0948c;Note=6 probable transmembrane helices predicted for Cj0948c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-97%2C 112-134%2C146-168 and 172-194;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0948c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	888779	888847	.	-	.	ID=id-Cj0948c;Note=6 probable transmembrane helices predicted for Cj0948c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-97%2C 112-134%2C146-168 and 172-194;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0948c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	888881	888949	.	-	.	ID=id-Cj0948c;Note=6 probable transmembrane helices predicted for Cj0948c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-97%2C 112-134%2C146-168 and 172-194;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0948c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	888992	889060	.	-	.	ID=id-Cj0948c;Note=6 probable transmembrane helices predicted for Cj0948c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-97%2C 112-134%2C146-168 and 172-194;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0948c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	889118	889186	.	-	.	ID=id-Cj0948c;Note=6 probable transmembrane helices predicted for Cj0948c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-97%2C 112-134%2C146-168 and 172-194;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0948c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	889196	889264	.	-	.	ID=id-Cj0948c;Note=6 probable transmembrane helices predicted for Cj0948c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-97%2C 112-134%2C146-168 and 172-194;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0948c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	888422	889261	.	-	.	ID=id-Cj0948c-2;Note=HMMPfam hit to PF01545%2C Cation efflux family%2C score 5.9e-101;gbkey=misc_feature;inference=protein motif:Pfam:PF01545;locus_tag=Cj0948c
gi|15791399|ref|NC_002163.1|	EMBL	gene	889279	890256	.	-	.	ID=gene-Cj0949c;Name=Cj0949c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0949c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	889279	890256	.	-	0	ID=cds-CAL35069.1;Parent=gene-Cj0949c;Dbxref=EnsemblGenomes-Gn:Cj0949c,EnsemblGenomes-Tr:CAL35069,GOA:Q0P9V0,InterPro:IPR007466,UniProtKB/TrEMBL:Q0P9V0,NCBI_GP:CAL35069.1;Name=CAL35069.1;Note=Original (2000) note: Cj0949c%2C unknown%2C len: 325 aa%3B similar to hypothetical proteins e.g. TR:O86509 (EMBL:AL031124) Streptomyces coelicolor SC1C2.08 (339 aa)%2Cfasta scores%3B opt: 283 z-score: 328.5 E(): 5.3e-11%2C 24.3%25 identity in 333 aa overlap. 45.5%25 identity to HP0049%3B~Updated (2006) note: Pfam domain PF04371 Porphyromonas-type peptidyl-arginine deiminase identified within CDS. Product modified to more specific family member based on motif match. Not fully characterised yet%2Cso putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF04371;locus_tag=Cj0949c;product=putative peptidyl-arginine deiminase family protein;protein_id=CAL35069.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	889294	890253	.	-	.	ID=id-Cj0949c;Note=HMMPfam hit to PF04371%2C Porphyromonas-type peptidyl-arginine deimin%2C score 6.5e-166;gbkey=misc_feature;inference=protein motif:Pfam:PF04371;locus_tag=Cj0949c
gi|15791399|ref|NC_002163.1|	EMBL	gene	890355	890789	.	-	.	ID=gene-Cj0950c;Name=Cj0950c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0950c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	890355	890789	.	-	0	ID=cds-CAL35070.1;Parent=gene-Cj0950c;Dbxref=EnsemblGenomes-Gn:Cj0950c,EnsemblGenomes-Tr:CAL35070,InterPro:IPR005184,UniProtKB/TrEMBL:Q0P9U9,NCBI_GP:CAL35070.1;Name=CAL35070.1;Note=Original (2000) note: Cj0950c%2C probable lipoprotein%2C len: 144 aa%3B some similarity to HSLJ_ECOLI heat shock protein HSLJ (140 aa)%2C fasta scores%3B opt: 152 z-score: 202.3 E(): 0.00057%2C 26.2%25 identity in 145 aa overlap. 33.3%25 identity to HP1462 (secreted protein involved in flagellar motility). Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domain PF03724 Domain of unknown function (306) identified within CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0950c;product=putative lipoprotein;protein_id=CAL35070.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	890382	890693	.	-	.	ID=id-Cj0950c;Note=HMMPfam hit to PF03724%2C Domain of unknown function (306)%2C score 1.5e-33;gbkey=misc_feature;inference=protein motif:Pfam:PF03724;locus_tag=Cj0950c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	890739	890771	.	-	.	ID=id-Cj0950c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0950c
gi|15791399|ref|NC_002163.1|	EMBL	gene	890799	891473	.	-	.	ID=gene-Cj0951c;Name=Cj0951c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0951c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	890799	891473	.	-	0	ID=cds-CAL35071.1;Parent=gene-Cj0951c;Dbxref=EnsemblGenomes-Gn:Cj0951c,EnsemblGenomes-Tr:CAL35071,GOA:Q0P9U8,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:Q0P9U8,NCBI_GP:CAL35071.1;Name=CAL35071.1;Note=Original (2000) note: Cj0951c%2C probable MCP-domain signal transduction protein%2C len: 224 aa%3B similar to MCP domains in many proteins e.g. CPS_CLOTM putative sensory transducer protein (557 aa)%2C fasta scores%3B opt: 270 z-score: 283.0 E(): 1.8e-08%2C 30.3%25 identity in 198 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00015 MCPsignal%2C Methyl-accepting chemotaxis protein (MCP) signaling domain. The ORF continues upstream of this start%2C and contains BLASTX hits to other MCP proteins%2Csuggesting that this may be a pseudogene%2C and should be read through from the upstream CDS. The sequence has been checked%2C and is believed to be correct%3B~Updated (2006) note: No specific characterisation has been carried out yet. Putative kept in product function. Functional classification - Signal transduction;gbkey=CDS;inference=protein motif:Pfam:PF00015;locus_tag=Cj0951c;product=putative MCP-domain signal transduction protein;protein_id=CAL35071.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	890841	891446	.	-	.	ID=id-Cj0951c;Note=HMMPfam hit to PF00015%2C Methyl-accepting chemotaxis protein (MCP) s%2C score 3.3e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF00015;locus_tag=Cj0951c
gi|15791399|ref|NC_002163.1|	EMBL	gene	891663	892382	.	-	.	ID=gene-Cj0952c;Name=Cj0952c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0952c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	891663	892382	.	-	0	ID=cds-CAL35072.1;Parent=gene-Cj0952c;Dbxref=EnsemblGenomes-Gn:Cj0952c,EnsemblGenomes-Tr:CAL35072,InterPro:IPR021796,UniProtKB/TrEMBL:Q0P9U7,NCBI_GP:CAL35072.1;Name=CAL35072.1;Note=Original (2000) note: Cj0952c%2C probable membrane protein%2C len: 239 aa%3B some simlarity to TR:O66691 (EMBL:AE000686) Aquifex aeolicus AQ_367 (850 aa)%2C fasta scores%3B opt: 229 z-score: 256.9 E(): 5.2e-07%2C 26.4%25 identity in 208 aa overlap. No Hp match. Contains PS00190 Cytochrome c family heme-binding site signature. BLASTX hits to MCP proteins in the C-terminus of this CDS continue into the downstream ORF%2C suggesting that this may be a pseudogene%2C and should be read through into the downstream CDS. The sequence has been checked%2C and is believed to be correct%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Running own Pfam search identified PF00672 HAMP domain. This domain is known as the HAMP domain for histidine kinases%2C adenylyl cyclases%2Cmethyl binding proteins and phosphatases. They are found in bacterial sensor and chemotaxis proteins. The bacterial proteins are usually integral membrane proteins and part of a two-component signal transduction pathway. Product function modified to more specific family member based on motif search results. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0952c;product=putative HAMP containing membrane protein;protein_id=CAL35072.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	891792	891860	.	-	.	ID=id-Cj0952c;Note=2 probable transmembrane helices predicted for Cj0952c by TMHMM2.0 at aa 10-32 and 175-197;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0952c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	892287	892355	.	-	.	ID=id-Cj0952c;Note=2 probable transmembrane helices predicted for Cj0952c by TMHMM2.0 at aa 10-32 and 175-197;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0952c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	891951	891968	.	-	.	ID=id-Cj0952c-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj0952c
gi|15791399|ref|NC_002163.1|	EMBL	gene	892478	894010	.	-	.	ID=gene-Cj0953c;Name=purH;gbkey=Gene;gene=purH;gene_biotype=protein_coding;locus_tag=Cj0953c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	892478	894010	.	-	0	ID=cds-CAL35073.1;Parent=gene-Cj0953c;Dbxref=EnsemblGenomes-Gn:Cj0953c,EnsemblGenomes-Tr:CAL35073,GOA:Q9PNY2,InterPro:IPR002695,InterPro:IPR011607,InterPro:IPR016193,InterPro:IPR024051,PDB:4EHI,NCBI_GP:CAL35073.1;Name=CAL35073.1;Note=Original (2000) note: Cj0953c%2C purH%2Cphosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase%2C len: 510 aa%3B highly similar to many e.g. PUR9_ECOLI phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) / IMP cyclohydrolase (EC 3.5.4.10) (529 aa)%2C fasta scores%3B opt: 812 z-score: 935.5 E(): 0%2C 44.6%25 identity in 529 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF01808 AICARFT/IMPCHase bienzyme and PF02142 MGS-like domain were identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Purine ribonucleotide biosynthesis%3B~PMID:2687276;gbkey=CDS;gene=purH;inference=protein motif:Pfam:PF02142;locus_tag=Cj0953c;product=phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase;protein_id=CAL35073.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	892685	893620	.	-	.	ID=id-Cj0953c;Note=HMMPfam hit to PF01808%2C AICARFT/IMPCHase bienzyme%2Cscore 1.3e-86;gbkey=misc_feature;gene=purH;inference=protein motif:Pfam:PF01808;locus_tag=Cj0953c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	893633	893977	.	-	.	ID=id-Cj0953c-2;Note=HMMPfam hit to PF02142%2C MGS-like domain%2C score 3.8e-53;gbkey=misc_feature;gene=purH;inference=protein motif:Pfam:PF02142;locus_tag=Cj0953c
gi|15791399|ref|NC_002163.1|	EMBL	gene	894013	894783	.	-	.	ID=gene-Cj0954c;Name=Cj0954c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0954c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	894013	894783	.	-	0	ID=cds-CAL35074.1;Parent=gene-Cj0954c;Dbxref=EnsemblGenomes-Gn:Cj0954c,EnsemblGenomes-Tr:CAL35074,InterPro:IPR001623,InterPro:IPR007791,InterPro:IPR029024,UniProtKB/TrEMBL:Q0P9U5,NCBI_GP:CAL35074.1;Name=CAL35074.1;Note=Original (2000) note: Cj0954c%2C possible dnaJ-like protein%2C len: 256 aa%3B weak similarity to e.g. DJLA_COXBU DNAJ-like protein DJLA (270 aa)%2C fasta scores%3B opt: 167 z-score: 193.0 E(): 0.0019%2C 26.9%25 identity in 201 aa overlap. No Hp match. Contains Pfam match to entry PF00226 DnaJ%2C DnaJ domain%3B~Updated (2006) note: No specific characterisation with acceptable identity scores carried out yet. Putative kept within product function. Functional classification -Chaperones%2C chaperonins%2C heat shock;gbkey=CDS;inference=protein motif:Pfam:PF00226;locus_tag=Cj0954c;product=putative DnaJ-like protein;protein_id=CAL35074.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	894022	894213	.	-	.	ID=id-Cj0954c;Note=HMMPfam hit to PF00226%2C DnaJ domain%2C score 9e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00226;locus_tag=Cj0954c
gi|15791399|ref|NC_002163.1|	EMBL	gene	894780	896966	.	-	.	ID=gene-Cj0955c;Name=purL;gbkey=Gene;gene=purL;gene_biotype=protein_coding;locus_tag=Cj0955c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	894780	896966	.	-	0	ID=cds-CAL35075.1;Parent=gene-Cj0955c;Dbxref=EnsemblGenomes-Gn:Cj0955c,EnsemblGenomes-Tr:CAL35075,GOA:Q9PNY0,InterPro:IPR000728,InterPro:IPR010074,InterPro:IPR010918,InterPro:IPR016188,NCBI_GP:CAL35075.1;Name=CAL35075.1;Note=Original (2000) note: Cj0955c%2C purL%2C probable phosphoribosylformylglycinamidine synthase%2C len: 728 aa%3B similar to many e.g. PURL_BACSU phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3) (742 aa)%2C fasta scores%3B opt: 2158 z-score: 2438.1 E(): 0%2C46.8%25 identity in 693 aa overlap. No Hp match. Contains 2x Pfam match to entry PF00586 AIRS%2C AIR synthase related proteins%3B~Updated (2006) note: Characterisation has been carried out in Bacillus subtilis with acceptable identity score%2C so putative not added to product function. Functional classification - Purine ribonucleotide biosynthesis%3B~PMID:10784038;gbkey=CDS;gene=purL;inference=protein motif:Pfam:PF00586;locus_tag=Cj0955c;product=phosphoribosylformylglycinamidine synthase;protein_id=CAL35075.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	894843	895271	.	-	.	ID=id-Cj0955c;Note=HMMPfam hit to PF02769%2C AIR synthase related protein%2C C-terminal dom%2C score 2.5e-09;gbkey=misc_feature;gene=purL;inference=protein motif:Pfam:PF02769;locus_tag=Cj0955c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	895305	895781	.	-	.	ID=id-Cj0955c-2;Note=HMMPfam hit to PF00586%2C AIR synthase related protein%2C N-terminal dom%2C score 6.5e-29;gbkey=misc_feature;gene=purL;inference=protein motif:Pfam:PF00586;locus_tag=Cj0955c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	895905	896375	.	-	.	ID=id-Cj0955c-3;Note=HMMPfam hit to PF02769%2C AIR synthase related protein%2C C-terminal dom%2C score 6.6e-47;gbkey=misc_feature;gene=purL;inference=protein motif:Pfam:PF02769;locus_tag=Cj0955c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	896406	896867	.	-	.	ID=id-Cj0955c-4;Note=HMMPfam hit to PF00586%2C AIR synthase related protein%2C N-terminal dom%2C score 4.9e-39;gbkey=misc_feature;gene=purL;inference=protein motif:Pfam:PF00586;locus_tag=Cj0955c
gi|15791399|ref|NC_002163.1|	EMBL	gene	896977	898305	.	-	.	ID=gene-Cj0956c;Name=trmE;gbkey=Gene;gene=trmE;gene_biotype=protein_coding;locus_tag=Cj0956c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	896977	898305	.	-	0	ID=cds-CAL35076.1;Parent=gene-Cj0956c;Dbxref=EnsemblGenomes-Gn:Cj0956c,EnsemblGenomes-Tr:CAL35076,GOA:Q9PNX9,InterPro:IPR004520,InterPro:IPR005225,InterPro:IPR006073,InterPro:IPR018948,InterPro:IPR025867,InterPro:IPR027266,InterPro:IPR027368,InterPro:IPR027417,NCBI_GP:CAL35076.1;Name=CAL35076.1;Note=Original (2000) note: Cj0956c%2C thdF%2C probable thiophene and furan oxidation protein%2C len: 442 aa%3B similar to e.g. THDF_ECOLI thiophene and furan oxidation protein THDF (454 aa)%2C fasta scores%3B opt: 688 z-score: 720.6 E(): 7.7e-33%2C 34.3%25 identity in 455 aa overlap. 42.2%25 identity to HP1452. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF01926 GTPase of unknown function identified within CDS. Initial characterisation linked thdF to thiophene and furan oxidation within Escherichia coli (PMID:10601028). Recent evidence has linked the CDS with a tRNA modification GTPase%2C TrmE family (PMID:10601028). Gene name has been modified from thdF to trmE. Functional classification -Detoxification%3B~PMID:10601028;gbkey=CDS;gene=trmE;inference=protein motif:Prosite:PS00017;locus_tag=Cj0956c;product=putative tRNA modification GTPase;protein_id=CAL35076.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	897307	897663	.	-	.	ID=id-Cj0956c;Note=HMMPfam hit to PF01926%2C GTPase of unknown function%2Cscore 1.7e-44;gbkey=misc_feature;gene=trmE;inference=protein motif:Pfam:PF01926;locus_tag=Cj0956c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	897622	897645	.	-	.	ID=id-Cj0956c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=trmE;inference=protein motif:Prosite:PS00017;locus_tag=Cj0956c
gi|15791399|ref|NC_002163.1|	EMBL	gene	898298	899116	.	-	.	ID=gene-Cj0957c;Name=Cj0957c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0957c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	898298	899116	.	-	0	ID=cds-CAL35077.1;Parent=gene-Cj0957c;Dbxref=EnsemblGenomes-Gn:Cj0957c,EnsemblGenomes-Tr:CAL35077,UniProtKB/TrEMBL:Q0P9U2,NCBI_GP:CAL35077.1;Name=CAL35077.1;Note=Original (2000) note: Cj0957c%2C unknown%2C len: 272 aa%3B 42.5%25 identity to HP1451. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0957c;product=hypothetical protein Cj0957c;protein_id=CAL35077.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	899120	900706	.	-	.	ID=gene-Cj0958c;Name=Cj0958c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0958c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	899120	900706	.	-	0	ID=cds-CAL35078.1;Parent=gene-Cj0958c;Dbxref=EnsemblGenomes-Gn:Cj0958c,EnsemblGenomes-Tr:CAL35078,GOA:Q9PNX7,InterPro:IPR001708,InterPro:IPR019998,InterPro:IPR028053,InterPro:IPR028055,NCBI_GP:CAL35078.1;Name=CAL35078.1;Note=Original (2000) note: Cj0958c%2C probable membrane protein%2C len: 528 aa%3B simlar to 60 kD inner-membrane proteins e.g. 60IM_ECOLI 60 kD inner-membrane protein (548 aa)%2C fasta scores%3B opt: 857 z-score: 956.2 E(): 0%2C 31.3%25 identity in 550 aa overlap. 45.8%25 identity to HP1450%3B~Updated (2006) note: Pfam domain PF02096 60Kd inner membrane protein identified within CDS. Also%2C five probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Similar to OXAA_ECOLI inner membrane protein OxaA. Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:12950181%2C PMID:12068816;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0958c;product=putative membrane protein;protein_id=CAL35078.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	899204	899272	.	-	.	ID=id-Cj0958c;Note=5 probable transmembrane helices predicted for Cj0958c by TMHMM2.0 at aa 13-32%2C 332-354%2C 400-422%2C 442-459 and 479-501;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0958c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	899330	899383	.	-	.	ID=id-Cj0958c;Note=5 probable transmembrane helices predicted for Cj0958c by TMHMM2.0 at aa 13-32%2C 332-354%2C 400-422%2C 442-459 and 479-501;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0958c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	899441	899509	.	-	.	ID=id-Cj0958c;Note=5 probable transmembrane helices predicted for Cj0958c by TMHMM2.0 at aa 13-32%2C 332-354%2C 400-422%2C 442-459 and 479-501;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0958c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	899645	899713	.	-	.	ID=id-Cj0958c;Note=5 probable transmembrane helices predicted for Cj0958c by TMHMM2.0 at aa 13-32%2C 332-354%2C 400-422%2C 442-459 and 479-501;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0958c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	900611	900670	.	-	.	ID=id-Cj0958c;Note=5 probable transmembrane helices predicted for Cj0958c by TMHMM2.0 at aa 13-32%2C 332-354%2C 400-422%2C 442-459 and 479-501;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0958c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	899153	899707	.	-	.	ID=id-Cj0958c-2;Note=HMMPfam hit to PF02096%2C 60Kd inner membrane protein%2C score 1.1e-110;gbkey=misc_feature;inference=protein motif:Pfam:PF02096;locus_tag=Cj0958c
gi|15791399|ref|NC_002163.1|	EMBL	gene	900703	901044	.	-	.	ID=gene-Cj0959c;Name=Cj0959c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0959c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	900703	901044	.	-	0	ID=cds-CAL35079.1;Parent=gene-Cj0959c;Dbxref=EnsemblGenomes-Gn:Cj0959c,EnsemblGenomes-Tr:CAL35079,GOA:Q9PNX6,InterPro:IPR002696,NCBI_GP:CAL35079.1;Name=CAL35079.1;Note=Original (2000) note: Cj0959c%2C unknown%2C len: 113 aa%3B similar to hypothetical proteins from a wide range of organisms%2C e.g. YIDD_BUCAP (85 aa)%2C fasta scores%3B opt: 168 z-score: 234.3 E(): 9.5e-06%2C 32.3%25 identity in 65 aa overlap%2C and YIDD_ECOLI (85 aa)%2C fasta scores%3B opt: 156 z-score: 218.9 E(): 6.8e-05%2C 31.7%25 identity in 63 aa overlap. Also similar to TR:Q44066 (EMBL:L36462) Aeromonas hydrophila putative ALPHA-HEMOLYSIN (85 aa)%2C fasta scores%3B opt: 156 z-score: 218.9 E(): 6.8e-05%2C 31.7%25 identity in 63 aa overlap. 34.2%25 identity to HP1449%3B~Updated (2006) note: Pfam domain PF01809 Domain of unknown function DUF37 identified within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01809;locus_tag=Cj0959c;product=conserved hypothetical protein Cj0959c;protein_id=CAL35079.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	900847	901044	.	-	.	ID=id-Cj0959c;Note=HMMPfam hit to PF01809%2C Domain of unknown function DUF37%2C score 6e-25;gbkey=misc_feature;inference=protein motif:Pfam:PF01809;locus_tag=Cj0959c
gi|15791399|ref|NC_002163.1|	EMBL	gene	901041	901367	.	-	.	ID=gene-Cj0960c;Name=rnpA;gbkey=Gene;gene=rnpA;gene_biotype=protein_coding;locus_tag=Cj0960c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	901041	901367	.	-	0	ID=cds-CAL35080.1;Parent=gene-Cj0960c;Dbxref=EnsemblGenomes-Gn:Cj0960c,EnsemblGenomes-Tr:CAL35080,GOA:Q9PNX5,InterPro:IPR000100,InterPro:IPR014721,InterPro:IPR020539,InterPro:IPR020568,NCBI_GP:CAL35080.1;Name=CAL35080.1;Note=Original (2000) note: Cj0960c%2C rnpA%2C probable ribonuclease P protein component%2C len: 108 aa%3B similar to e.g. RNPA_BACSU ribonuclease P protein component (EC 3.1.26.5) (116 aa)%2C fasta scores%3B opt: 195 z-score: 280.1 E(): 2.6e-08%2C 27.9%25 identity in 111 aa overlap. 31.9%25 identity to HP1448. Contains Pfam match to entry PF00825 Ribonuclease_P%2C Ribonuclease P%3B~Updated (2006) note: Prosite domain PS00648 RIBONUCLEASE_P%2C Bacterial ribonuclease P protein identified within CDS. Further support given to product function. Characterised in Bacillus subtilis%2C however%2Cidentity score was marginal. Putative not added to product function. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:9628904;gbkey=CDS;gene=rnpA;inference=protein motif:Prosite:PS00648;locus_tag=Cj0960c;product=ribonuclease P protein component;protein_id=CAL35080.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	901053	901367	.	-	.	ID=id-Cj0960c;Note=HMMPfam hit to PF00825%2C Ribonuclease P%2C score 2.6e-15;gbkey=misc_feature;gene=rnpA;inference=protein motif:Pfam:PF00825;locus_tag=Cj0960c
gi|15791399|ref|NC_002163.1|	EMBL	gene	901364	901498	.	-	.	ID=gene-Cj0961c;Name=rpmH;gbkey=Gene;gene=rpmH;gene_biotype=protein_coding;locus_tag=Cj0961c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	901364	901498	.	-	0	ID=cds-CAL35081.1;Parent=gene-Cj0961c;Dbxref=EnsemblGenomes-Gn:Cj0961c,EnsemblGenomes-Tr:CAL35081,GOA:Q9PNX4,InterPro:IPR000271,InterPro:IPR020939,NCBI_GP:CAL35081.1;Name=CAL35081.1;Note=Original (2000) note: Cj0961c%2C rpmH%2C 50S ribosomal protein L34%2C len: 44 aa%3B highly similar to many e.g. RL34_ECOLI 50S ribosomal protein L34 (46 aa)%2C fasta scores%3B opt: 196 z-score: 321.0 E(): 1.4e-10%2C 65.9%25 identity in 44 aa overlap. 90.9%25 identity to HP1447. Contains PS00784 Ribosomal protein L34 signature%2C and Pfam match to entry PF00468 L34%2C Ribosomal protein L34%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:6329723;gbkey=CDS;gene=rpmH;inference=protein motif:Prosite:PS00784;locus_tag=Cj0961c;product=50S ribosomal protein L34;protein_id=CAL35081.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	901367	901498	.	-	.	ID=id-Cj0961c;Note=HMMPfam hit to PF00468%2C Ribosomal protein L34%2Cscore 2.7e-18;gbkey=misc_feature;gene=rpmH;inference=protein motif:Pfam:PF00468;locus_tag=Cj0961c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	901436	901495	.	-	.	ID=id-Cj0961c-2;Note=PS00784 Ribosomal protein L34 signature;gbkey=misc_feature;gene=rpmH;inference=protein motif:Prosite:PS00784;locus_tag=Cj0961c
gi|15791399|ref|NC_002163.1|	EMBL	gene	901629	902108	.	+	.	ID=gene-Cj0962;Name=Cj0962;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0962
gi|15791399|ref|NC_002163.1|	EMBL	CDS	901629	902108	.	+	0	ID=cds-CAL35082.1;Parent=gene-Cj0962;Dbxref=EnsemblGenomes-Gn:Cj0962,EnsemblGenomes-Tr:CAL35082,GOA:Q0P9T7,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q0P9T7,NCBI_GP:CAL35082.1;Name=CAL35082.1;Note=Original (2000) note: Cj0962%2C possible acetyltransferase%2C len: 159 aa%3B most similar to eukaryotic acetyltransferases%2C e.g. TR:P79081 (EMBL:U82218) Schizosaccharomyces pombe putative acetyltransferase ATS1 (168 aa)%2C fasta scores%3B opt: 317 z-score: 406.2 E(): 2.5e-15%2C 34.6%25 identity in 162 aa overlap%2C and ATDA_MOUSE diamine acetyltransferase (171 aa)%2C fasta scores%3B opt: 211 z-score: 274.9 E(): 5.2e-08%2C 27.4%25 identity in 168 aa overlap. No Hp match. Contains Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Pfam:PF00583;locus_tag=Cj0962;product=putative acetyltransferase;protein_id=CAL35082.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	901788	902042	.	+	.	ID=id-Cj0962;Note=HMMPfam hit to PF00583%2C Acetyltransferase (GNAT) family%2C score 1.8e-13;gbkey=misc_feature;inference=protein motif:Pfam:PF00583;locus_tag=Cj0962
gi|15791399|ref|NC_002163.1|	EMBL	gene	902105	902713	.	+	.	ID=gene-Cj0963;Name=Cj0963;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0963
gi|15791399|ref|NC_002163.1|	EMBL	CDS	902105	902713	.	+	0	ID=cds-CAL35083.1;Parent=gene-Cj0963;Dbxref=EnsemblGenomes-Gn:Cj0963,EnsemblGenomes-Tr:CAL35083,InterPro:IPR005122,UniProtKB/TrEMBL:Q0P9T6,NCBI_GP:CAL35083.1;Name=CAL35083.1;Note=Original (2000) note: Cj0963%2C unknown%2C len: 202 aa%3B similar to hypothetical proteins e.g. TR:O67598 (EMBL:AE000751) Aquifex aeolicus DPLF (195 aa)%2C fasta scores%3B opt: 234 z-score: 301.4 E(): 1.7e-09%2C 27.2%25 identity in 184 aa overlap. 21.4%25 identity to HP0650. Functional classification - Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0963;product=hypothetical protein Cj0963;protein_id=CAL35083.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	902710	903900	.	+	.	ID=gene-Cj0964;Name=Cj0964;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0964
gi|15791399|ref|NC_002163.1|	EMBL	CDS	902710	903900	.	+	0	ID=cds-CAL35084.1;Parent=gene-Cj0964;Dbxref=EnsemblGenomes-Gn:Cj0964,EnsemblGenomes-Tr:CAL35084,UniProtKB/TrEMBL:Q0P9T5,NCBI_GP:CAL35084.1;Name=CAL35084.1;Note=Original (2000) note: Cj0964%2C probable periplasmic protein%2C len: 396 aa%3B 26.6%25 identity to HP0781. Contains probable N-terminal signal sequence. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0964;product=putative periplasmic protein;protein_id=CAL35084.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	903892	904266	.	-	.	ID=gene-Cj0965c;Name=Cj0965c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0965c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	903892	904266	.	-	0	ID=cds-CAL35085.1;Parent=gene-Cj0965c;Dbxref=EnsemblGenomes-Gn:Cj0965c,EnsemblGenomes-Tr:CAL35085,GOA:Q0P9T4,InterPro:IPR006683,InterPro:IPR006684,InterPro:IPR008272,InterPro:IPR029069,UniProtKB/TrEMBL:Q0P9T4,NCBI_GP:CAL35085.1;Name=CAL35085.1;Note=Original (2000) note: Cj0965c%2C unknown%2C len: 124 aa%3B similar to hypothetical proteins e.g. YBGC_ECOLI (134 aa)%2C fasta scores%3B opt: 235 z-score: 313.7 E(): 3.5e-10%2C38.1%25 identity in 113 aa overlap. 40.6%25 identity to HP0496%3B~Updated (2006) note: Pfam domain PF03061 Thioesterase superfamily and Prosite domain PS01328 4HBCOA_THIOESTERASE%2C 4-hydroxybenzoyl-CoA thioesterase%2Cactive site identified within CDS. Product modified to more specific family member based on motif match. Some characterisation carried out in Escerichia coli with acceptable identity score. Putative kept in product function. Functional classification - Misc%3B~PMID:15808744;gbkey=CDS;inference=protein motif:Prosite:PS01328;locus_tag=Cj0965c;product=putative acyl-CoA thioester hydrolase;protein_id=CAL35085.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	903979	904230	.	-	.	ID=id-Cj0965c;Note=HMMPfam hit to PF03061%2C Thioesterase superfamily%2Cscore 1.4e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF03061;locus_tag=Cj0965c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	904204	904257	.	-	.	ID=id-Cj0965c-2;Note=PS01328 4-hydroxybenzoyl-CoA thioesterase family active site;gbkey=misc_feature;inference=protein motif:Prosite:PS01328;locus_tag=Cj0965c
gi|15791399|ref|NC_002163.1|	EMBL	gene	904409	906697	.	+	.	ID=gene-Cj0967;Name=Cj0967;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0967
gi|15791399|ref|NC_002163.1|	EMBL	CDS	904409	906697	.	+	0	ID=cds-CAL35086.1;Parent=gene-Cj0967;Dbxref=EnsemblGenomes-Gn:Cj0967,EnsemblGenomes-Tr:CAL35086,UniProtKB/TrEMBL:Q0P9T3,NCBI_GP:CAL35086.1;Name=CAL35086.1;Note=Original (2000) note: Cj0967%2C possible periplasmic protein%2C len: 762 aa%3B no Hp match. N- and C- termini are similar to two consecutive genes Cj0735 (37.8%25 identity in 214 aa overlap) and Cj0736 (42.3%25 identity in 562 aa overlap). Contains probable N-terminal signal sequence. Note that an ATA initiation codon has been used: this is consistent with the RBS%2C the similarity to Cj0735%2C and measures of coding likelyhood based on aa usage. Contains S00639 Eukaryotic thiol (cysteine) proteases histidine active site%2C PS00133 Zinc carboxypeptidases%2C zinc-binding region 2 signature%2C and PS00017 ATP/GTP-binding site motif A (P-loop). Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Prosite:PS00133;locus_tag=Cj0967;product=putative periplasmic protein;protein_id=CAL35086.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	904736	904768	.	+	.	ID=id-Cj0967;Note=PS00639 Eukaryotic thiol (cysteine) proteases histidine active site;gbkey=misc_feature;inference=protein motif:Prosite:PS00639;locus_tag=Cj0967
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	904763	904795	.	+	.	ID=id-Cj0967-2;Note=PS00133 Zinc carboxypeptidases%2C zinc-binding region 2 signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00133;locus_tag=Cj0967
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	905468	905491	.	+	.	ID=id-Cj0967-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj0967
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	906964	907004	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:906964..907004;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	907117	907396	.	+	.	ID=gene-Cj0969;Name=Cj0969;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Cj0969;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	907117	907305	.	+	0	ID=cds-Cj0969;Parent=gene-Cj0969;Note=Original (2000) note: Cj0968%2C probable periplasmic protein%2C len: 80 aa%3B no Hp match. Contains probable N-terminal signal sequence. Similar to N-terminus of Cj0737 (53.3%25 identity in 92 aa overlap). The similarity continues in Cj0968%2C suggesting that this may be the start of a pseudogene%3B~Original (2000) note: Cj0969%2C probable pseudogene%2Clen 132 bp%3B 65.4%25 identical to part of Cj0737%2C similarity continues from upstream ORF. No Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity scores has been carried out yet. Thus%2C putative kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0969;product=pseudogene (putative periplasmic protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	907289	907396	.	+	0	ID=cds-Cj0969;Parent=gene-Cj0969;Note=Original (2000) note: Cj0968%2C probable periplasmic protein%2C len: 80 aa%3B no Hp match. Contains probable N-terminal signal sequence. Similar to N-terminus of Cj0737 (53.3%25 identity in 92 aa overlap). The similarity continues in Cj0968%2C suggesting that this may be the start of a pseudogene%3B~Original (2000) note: Cj0969%2C probable pseudogene%2Clen 132 bp%3B 65.4%25 identical to part of Cj0737%2C similarity continues from upstream ORF. No Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity scores has been carried out yet. Thus%2C putative kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj0969;product=pseudogene (putative periplasmic protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	907408	907710	.	+	.	ID=gene-Cj0970;Name=Cj0970;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0970
gi|15791399|ref|NC_002163.1|	EMBL	CDS	907408	907710	.	+	0	ID=cds-CAL35088.1;Parent=gene-Cj0970;Dbxref=EnsemblGenomes-Gn:Cj0970,EnsemblGenomes-Tr:CAL35088,UniProtKB/TrEMBL:Q0P9T2,NCBI_GP:CAL35088.1;Name=CAL35088.1;Note=Original (2000) note: Cj0970%2C unknown%2C len: 100 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0970;product=hypothetical protein Cj0970;protein_id=CAL35088.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	907713	908105	.	+	.	ID=gene-Cj0971;Name=Cj0971;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0971
gi|15791399|ref|NC_002163.1|	EMBL	CDS	907713	908105	.	+	0	ID=cds-CAL35089.1;Parent=gene-Cj0971;Dbxref=EnsemblGenomes-Gn:Cj0971,EnsemblGenomes-Tr:CAL35089,UniProtKB/TrEMBL:Q0P9T1,NCBI_GP:CAL35089.1;Name=CAL35089.1;Note=Original (2000) note: Cj0971%2C unknown%2C len: 130 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0971;product=hypothetical protein Cj0971;protein_id=CAL35089.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	908107	908430	.	+	.	ID=gene-Cj0972;Name=Cj0972;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0972
gi|15791399|ref|NC_002163.1|	EMBL	CDS	908107	908430	.	+	0	ID=cds-CAL35090.1;Parent=gene-Cj0972;Dbxref=EnsemblGenomes-Gn:Cj0972,EnsemblGenomes-Tr:CAL35090,UniProtKB/TrEMBL:Q0P9T0,NCBI_GP:CAL35090.1;Name=CAL35090.1;Note=Original (2000) note: Cj0972%2C unknown%2C len: 107 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0972;product=hypothetical protein Cj0972;protein_id=CAL35090.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	908554	908664	.	+	.	ID=gene-Cj0973;Name=Cj0973;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0973
gi|15791399|ref|NC_002163.1|	EMBL	CDS	908554	908664	.	+	0	ID=cds-CAL35091.1;Parent=gene-Cj0973;Dbxref=EnsemblGenomes-Gn:Cj0973,EnsemblGenomes-Tr:CAL35091,UniProtKB/TrEMBL:Q0P9S9,NCBI_GP:CAL35091.1;Name=CAL35091.1;Note=Original (2000) note: Cj0973%2C unknown%2C len: 36 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0973;product=hypothetical protein Cj0973;protein_id=CAL35091.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	908693	908833	.	+	.	ID=gene-Cj0974;Name=Cj0974;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0974
gi|15791399|ref|NC_002163.1|	EMBL	CDS	908693	908833	.	+	0	ID=cds-CAL35092.1;Parent=gene-Cj0974;Dbxref=EnsemblGenomes-Gn:Cj0974,EnsemblGenomes-Tr:CAL35092,UniProtKB/TrEMBL:Q0P9S8,NCBI_GP:CAL35092.1;Name=CAL35092.1;Note=Original (2000) note: Cj0974%2C questionable CDS%2C len 46 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj0974;product=very hypothetical protein Cj0974;protein_id=CAL35092.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	908891	910615	.	+	.	ID=gene-Cj0975;Name=Cj0975;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0975
gi|15791399|ref|NC_002163.1|	EMBL	CDS	908891	910615	.	+	0	ID=cds-CAL35093.1;Parent=gene-Cj0975;Dbxref=EnsemblGenomes-Gn:Cj0975,EnsemblGenomes-Tr:CAL35093,InterPro:IPR013686,UniProtKB/TrEMBL:Q0P9S7,NCBI_GP:CAL35093.1;Name=CAL35093.1;Note=Original (2000) note: Cj0975%2C probable outer-membrane protein%2C len: 584 aa%3B similar to OM proteins involved in specific protein secretion/activation e.g. HXB1_HAEIN heme-hemopexin utilization protein B precursor (565 aa)%2C fasta scores%3B opt: 489 z-score: 539.9 E(): 9e-23%2C 23.9%25 identity in 570 aa overlap%2C and HLYB_PROMI hemolysin activator protein precursor (561 aa)%2Cfasta scores%3B opt: 220 z-score: 244.2 E(): 2.7e-06%2C 21.0%25 identity in 539 aa overlap. No Hp match. Apparently a complete copy of pseudogene Cj0742%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Protein and peptide secretion;gbkey=CDS;locus_tag=Cj0975;product=putative outer-membrane protein;protein_id=CAL35093.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	910711	911601	.	+	.	ID=gene-Cj0976;Name=Cj0976;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0976
gi|15791399|ref|NC_002163.1|	EMBL	CDS	910711	911601	.	+	0	ID=cds-CAL35094.1;Parent=gene-Cj0976;Dbxref=EnsemblGenomes-Gn:Cj0976,EnsemblGenomes-Tr:CAL35094,GOA:Q0P9S6,InterPro:IPR010017,InterPro:IPR027555,InterPro:IPR029063,NCBI_GP:CAL35094.1;Name=CAL35094.1;Note=Original (2000) note: Cj0976%2C unknown%2C len: 296 aa%3B similar to hypothetical proteins e.g. YECP_ECOLI (323 aa)%2Cfatsta scores%3B opt: 649 z-score: 775.1 E(): 0%2C 35.7%25 identity in 291 aa overlap. 51.2%25 identity to HP0419%3B~Updated (2006) note: Prosite domain PS50124 methyltransferase identified within CDS. Product modified to more specific family member based on motif match. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS50124;locus_tag=Cj0976;product=putative methyltransferase;protein_id=CAL35094.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	911674	912252	.	+	.	ID=gene-Cj0977;Name=Cj0977;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0977
gi|15791399|ref|NC_002163.1|	EMBL	CDS	911674	912252	.	+	0	ID=cds-CAL35095.1;Parent=gene-Cj0977;Dbxref=EnsemblGenomes-Gn:Cj0977,EnsemblGenomes-Tr:CAL35095,InterPro:IPR029069,UniProtKB/TrEMBL:Q0P9S5,NCBI_GP:CAL35095.1;Name=CAL35095.1;Note=Original (2000) note: Cj0977%2C unknown%2C len: 192 aa%3B 29.2%25 identity to HP0420%3B~Updated (2006) note: Literature search identified paper linking product function to be involved with invasion of intestinal epithelial cells. Functional classification - Conserved hypothetical proteins%3B~PMID:16369037;gbkey=CDS;locus_tag=Cj0977;product=hypothetical protein Cj0977;protein_id=CAL35095.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	912253	912426	.	-	.	ID=gene-Cj0978c;Name=Cj0978c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0978c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	912253	912426	.	-	0	ID=cds-CAL35096.1;Parent=gene-Cj0978c;Dbxref=EnsemblGenomes-Gn:Cj0978c,EnsemblGenomes-Tr:CAL35096,UniProtKB/TrEMBL:Q0P9S4,NCBI_GP:CAL35096.1;Name=CAL35096.1;Note=Original (2000) note: Cj0978c%2C probable lipoprotein%2C len: 57 aa%3B no Hp match. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0978c;product=putative lipoprotein;protein_id=CAL35096.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	912376	912408	.	-	.	ID=id-Cj0978c;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0978c
gi|15791399|ref|NC_002163.1|	EMBL	gene	912435	912962	.	-	.	ID=gene-Cj0979c;Name=Cj0979c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0979c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	912435	912962	.	-	0	ID=cds-CAL35097.1;Parent=gene-Cj0979c;Dbxref=EnsemblGenomes-Gn:Cj0979c,EnsemblGenomes-Tr:CAL35097,GOA:Q0P9S3,InterPro:IPR016071,UniProtKB/TrEMBL:Q0P9S3,NCBI_GP:CAL35097.1;Name=CAL35097.1;Note=Original (2000) note: Cj0979c%2C probable secreted nuclease%2C len: 175 aa%3B similar to many e.g. NUC_STAHY thermonuclease precursor (EC 3.1.31.1) (169 aa)%2C fasta scores%3B opt: 206 z-score: 261.7 E(): 2.8e-07%2C 36.9%25 identity in 122 aa overlap. No Hp match. Contains possible N-terminal signal sequence and Pfam match to entry PF00565 SNase%2C Staphylococcal nuclease homologues%3B~Updated (2006) note: Some characterisation work in Staphylococcus spp. Putative kept in product function. Functional classification - Degradation of macromolecules - DNA%3B~PMID:67041918;gbkey=CDS;inference=protein motif:Pfam:PF00565;locus_tag=Cj0979c;product=putative secreted nuclease;protein_id=CAL35097.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	912483	912839	.	-	.	ID=id-Cj0979c;Note=HMMPfam hit to PF00565%2C Staphylococcal nuclease homologue%2C score 1.3e-34;gbkey=misc_feature;inference=protein motif:Pfam:PF00565;locus_tag=Cj0979c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	912846	912902	.	-	.	ID=id-Cj0979c-2;Note=1 probable transmembrane helix predicted for Cj0979c by TMHMM2.0 at aa 21-39;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0979c
gi|15791399|ref|NC_002163.1|	EMBL	gene	913030	914298	.	+	.	ID=gene-Cj0980;Name=Cj0980;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0980
gi|15791399|ref|NC_002163.1|	EMBL	CDS	913030	914298	.	+	0	ID=cds-CAL35098.1;Parent=gene-Cj0980;Dbxref=EnsemblGenomes-Gn:Cj0980,EnsemblGenomes-Tr:CAL35098,GOA:Q0P9S2,InterPro:IPR001160,InterPro:IPR002933,UniProtKB/TrEMBL:Q0P9S2,NCBI_GP:CAL35098.1;Name=CAL35098.1;Note=Original (2000) note: Cj0980%2C possible peptidase%2Clen: 422 aa%3B similar to e.g. PEPD_ECOLI aminoacyl-histidine dipeptidase (484 aa)%2C fasta scores%3B opt: 175 z-score: 206.9 E(): 0.00032%2C 31.1%25 identity in 476 aa overlap. No Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Degradation of macromolecules - Proteins%2C peptides and glycopeptides%3B~PMID:2651887;gbkey=CDS;locus_tag=Cj0980;product=putative peptidase;protein_id=CAL35098.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	914281	915528	.	-	.	ID=gene-Cj0981c;Name=cjaB;gbkey=Gene;gene=cjaB;gene_biotype=protein_coding;locus_tag=Cj0981c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	914281	915528	.	-	0	ID=cds-CAL35099.1;Parent=gene-Cj0981c;Dbxref=EnsemblGenomes-Gn:Cj0981c,EnsemblGenomes-Tr:CAL35099,GOA:Q0P9S1,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0P9S1,NCBI_GP:CAL35099.1;Name=CAL35099.1;Note=Original (2000) note: Cj0981c%2C transmembrane transport protein%2C len: 415 aa%3B similar to many members of the sugar transporter family e.g. YHJE_ECOLI hypothetical metabolite transport protein I (440 aa)%2C fasta scores%3B opt: 548 z-score: 610.3 E(): 1.1e-26%2C 30.4%25 identity in 418 aa overlap%2C and PROP_ECOLI proline/betaine transporter (500 aa)%2C fasta scores%3B opt: 474 z-score: 528.2 E(): 4e-22%2C 28.0%25 identity in 421 aa overlap. No Hp ortholog. Contains PS00216 Sugar transport protein%3B~Updated (2006) note: Pfam domains PF07690 Major Facilitator Superfamily and PF00083 Sugar (and other) transporter%2C were identified within CDS. Twelve probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member based on motif match. Not specifically characterised yet%2C so putative kept in product function. Some characterisation work carried out within Campylobacter jejuni. Gene name has been added. Functional classification - Transport/binding proteins - Other%3B~PMID:9395059;gbkey=CDS;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;product=putative MFS (Major Facilitator Superfamily) transport protein;protein_id=CAL35099.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	914332	914391	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	914401	914469	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	914503	914571	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	914584	914637	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	914656	914724	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	914767	914835	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	914935	914994	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	915037	915105	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	915163	915222	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	915235	915294	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	915331	915399	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	915442	915510	.	-	.	ID=id-Cj0981c;Note=12 probable transmembrane helices predicted for Cj0981c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-98%2C 103-122%2C142-164%2C 179-198%2C 232-254%2C 269-291%2C 298-315%2C 320-342%2C354-376 and 380-399;gbkey=misc_feature;gene=cjaB;inference=protein motif:TMHMM:2.0;locus_tag=Cj0981c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	914284	915513	.	-	.	ID=id-Cj0981c-2;Note=HMMPfam hit to PF00083%2C Sugar (and other) transporter%2C score 6.5e-10;gbkey=misc_feature;gene=cjaB;inference=protein motif:Pfam:PF00083;locus_tag=Cj0981c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	914356	914388	.	-	.	ID=id-Cj0981c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=cjaB;inference=protein motif:Prosite:PS00013;locus_tag=Cj0981c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	914395	915498	.	-	.	ID=id-Cj0981c-4;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 2.8e-19;gbkey=misc_feature;gene=cjaB;inference=protein motif:Pfam:PF07690;locus_tag=Cj0981c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	915280	915330	.	-	.	ID=id-Cj0981c-5;Note=PS00216 Sugar transport proteins signature 1;gbkey=misc_feature;gene=cjaB;inference=protein motif:Prosite:PS00216;locus_tag=Cj0981c
gi|15791399|ref|NC_002163.1|	EMBL	gene	915568	916407	.	-	.	ID=gene-Cj0982c;Name=cjaA;gbkey=Gene;gene=cjaA;gene_biotype=protein_coding;locus_tag=Cj0982c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	915568	916407	.	-	0	ID=cds-CAL35100.1;Parent=gene-Cj0982c;Dbxref=EnsemblGenomes-Gn:Cj0982c,EnsemblGenomes-Tr:CAL35100,GOA:Q0P9S0,InterPro:IPR001638,PDB:1XT8,UniProtKB/TrEMBL:Q0P9S0,NCBI_GP:CAL35100.1;Name=CAL35100.1;Note=Original (2000) note: Cj0982c%2C probable amino-acid transporter periplasmic solute-binding protein%2C len: 279 aa%3B similar to e.g. GLNH_BACST glutamine-binding protein precursor (262 aa)%2C fasta scores%3B opt: 410 z-score: 484.3 E(): 1.1e-19%2C 32.4%25 identity in 253 aa overlap. 98.2%25 identical to TR:O05414 (EMBL:U93169) C. jejuni OMPH1%2C and 89.2%25 identical to TR:P94643 (EMBL:U93169) C. jejuni CjaA. 56.1%25 identity to HP1172. Contains Pfam match to entry PF00497 SBP_bac_3%2C Bacterial extracellular solute-binding proteins%2C N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Similar to more than one genus with marginal identity scores. Putative kept within product function. Some characterisation work carried out within Campylobacter jejuni. Gene name has been added. Functional classification - Transport/binding proteins -Other%3B~PMID:9395059;gbkey=CDS;gene=cjaA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0982c;product=putative amino-acid transporter periplasmic solute-binding protein;protein_id=CAL35100.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	915625	916287	.	-	.	ID=id-Cj0982c;Note=HMMPfam hit to PF00497%2C Bacterial extracellular solute-binding prot%2C score 4.6e-53;gbkey=misc_feature;gene=cjaA;inference=protein motif:Pfam:PF00497;locus_tag=Cj0982c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	916348	916380	.	-	.	ID=id-Cj0982c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=cjaA;inference=protein motif:Prosite:PS00013;locus_tag=Cj0982c
gi|15791399|ref|NC_002163.1|	EMBL	gene	916626	917744	.	+	.	ID=gene-Cj0983;Name=Cj0983;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0983
gi|15791399|ref|NC_002163.1|	EMBL	CDS	916626	917744	.	+	0	ID=cds-CAL35101.1;Parent=gene-Cj0983;Dbxref=EnsemblGenomes-Gn:Cj0983,EnsemblGenomes-Tr:CAL35101,GOA:P45492,NCBI_GP:CAL35101.1;Name=CAL35101.1;Note=Original (2000) note: Cj0983%2C probable lipoprotein%2Clen: 372 aa%3B 97.0%25 identical to YHI4_CAMJE. No Hp match. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj0983;product=putative lipoprotein;protein_id=CAL35101.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	916647	916679	.	+	.	ID=id-Cj0983;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj0983
gi|15791399|ref|NC_002163.1|	EMBL	gene	917836	918576	.	+	.	ID=gene-Cj0984;Name=Cj0984;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0984
gi|15791399|ref|NC_002163.1|	EMBL	CDS	917836	918576	.	+	0	ID=cds-CAL35102.1;Parent=gene-Cj0984;Dbxref=EnsemblGenomes-Gn:Cj0984,EnsemblGenomes-Tr:CAL35102,InterPro:IPR005583,NCBI_GP:CAL35102.1;Name=CAL35102.1;Note=Original (2000) note: Cj0984%2C unknown%2C len: 246 aa%3B 97.2%25 identical to YHI3_CAMJE. No Hp match. Weak similarity to TR:O66885 (EMBL:AE000700) Aquifex aeolicus AQ_644 (227 aa)%2C fasta scores%3B opt: 154 z-score: 190.3 E(): 0.0027%2C 23.6%25 identity in 212 aa overlap%3B~Updated (2006) note: Pfam domain PF03883 Protein of unknown function (DUF328) identified within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF03883;locus_tag=Cj0984;product=conserved hypothetical protein Cj0984;protein_id=CAL35102.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	917836	918573	.	+	.	ID=id-Cj0984;Note=HMMPfam hit to PF03883%2C Protein of unknown function (DUF328)%2C score 1.8e-128;gbkey=misc_feature;inference=protein motif:Pfam:PF03883;locus_tag=Cj0984
gi|15791399|ref|NC_002163.1|	EMBL	gene	918580	919731	.	-	.	ID=gene-Cj0985c;Name=hipO;gbkey=Gene;gene=hipO;gene_biotype=protein_coding;locus_tag=Cj0985c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	918580	919731	.	-	0	ID=cds-CAL35103.1;Parent=gene-Cj0985c;Dbxref=EnsemblGenomes-Gn:Cj0985c,EnsemblGenomes-Tr:CAL35103,GOA:P45493,InterPro:IPR002933,InterPro:IPR011650,InterPro:IPR017439,NCBI_GP:CAL35103.1;Name=CAL35103.1;Note=Original (2000) note: Cj0985c%2C hipO%2C hippurate hydrolase%2C len: 383 aa%3B 99.0%25 identical to HIPO_CAMJE hippurate hydrolase (EC 3.5.1.32)%2C and similar to other hydrolases belinging to the peptidase M40 family (AMA/HIPO/HYUC hydrolase family) e.g. CBPX_SULSO thermostable carboxypeptidase (393 aa)%2C fasta scores%3B opt: 805 z-score: 949.5 E(): 0%2C 38.2%25 identity in 398 aa overlap%3B~Updated (2006) note: Pfam domains PF01546 Peptidase family M20/M25/M40 and PF07687 Peptidase dimerisation domain identified within CDS. Characterised in Campylobacter jejuni%2C so putative not added to product function. Functional classification - Misc%3B~PMID:7730270;gbkey=CDS;gene=hipO;inference=protein motif:Pfam:PF07687;locus_tag=Cj0985c;product=hippurate hydrolase;protein_id=CAL35103.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	918592	919518	.	-	.	ID=id-Cj0985c;Note=HMMPfam hit to PF01546%2C Peptidase family M20/M25/M40%2C score 8.8e-44;gbkey=misc_feature;gene=hipO;inference=protein motif:Pfam:PF01546;locus_tag=Cj0985c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	918658	918681	.	-	.	ID=id-Cj0985c-2;Note=PS00881 Protein splicing signature;gbkey=misc_feature;gene=hipO;inference=protein motif:Prosite:PS00881;locus_tag=Cj0985c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	918883	919203	.	-	.	ID=id-Cj0985c-3;Note=HMMPfam hit to PF07687%2C Peptidase dimerisation domain%2C score 3.8e-12;gbkey=misc_feature;gene=hipO;inference=protein motif:Pfam:PF07687;locus_tag=Cj0985c
gi|15791399|ref|NC_002163.1|	EMBL	gene	919733	919921	.	-	.	ID=gene-Cj0986c;Name=Cj0986c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0986c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	919733	919921	.	-	0	ID=cds-CAL35104.1;Parent=gene-Cj0986c;Dbxref=EnsemblGenomes-Gn:Cj0986c,EnsemblGenomes-Tr:CAL35104,UniProtKB/TrEMBL:Q0P9R6,NCBI_GP:CAL35104.1;Name=CAL35104.1;Note=Original (2000) note: Cj0986c%2C possible integral membrane protein%2C len: 62 aa%3B 98.4%25 identical to C-terminus of YHI2_CAMJE hypothetical protein (203 aa). No Hp match%3B~Updated (2006) note: Two probable transmembrane helices predicted for Cj0986c by TMHMM2.0. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0986c;product=putative integral membrane protein;protein_id=CAL35104.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	919769	919837	.	-	.	ID=id-Cj0986c;Note=2 probable transmembrane helices predicted for Cj0986c by TMHMM2.0 at aa 2-19 and 29-51;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0986c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	919865	919918	.	-	.	ID=id-Cj0986c;Note=2 probable transmembrane helices predicted for Cj0986c by TMHMM2.0 at aa 2-19 and 29-51;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0986c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	919988	920953	.	-	.	ID=gene-Cj0987c;Name=Cj0987c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0987c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	919988	920953	.	-	0	ID=cds-CAL35105.1;Parent=gene-Cj0987c;Dbxref=EnsemblGenomes-Gn:Cj0987c,EnsemblGenomes-Tr:CAL35105,GOA:P45490,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,NCBI_GP:CAL35105.1;Name=CAL35105.1;Note=Original (2000) note: Cj0987c%2C probable integral membrane protein%2C len: 321 aa%3B identical to N- and C-terminus of YHI2_CAMJE hypothetical protein (203 aa)%2Cwhich has a central deletion relative to this CDS. Some similarity to hypothetical membrane proteins e.g. YJHB_ECOLI (405 aa)%2C fasta scores%3B opt: 239 z-score: 285.2 E(): 1.4e-08%2C 24.6%25 identity in 301 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Also%2C nine probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member based on motif match. Not specifically characterised yet%2C so putative kept in product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0987c;product=putative MFS (Major Facilitator Superfamily) transport protein;protein_id=CAL35105.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	920033	920101	.	-	.	ID=id-Cj0987c;Note=9 probable transmembrane helices predicted for Cj0987c by TMHMM2.0 at aa 12-31%2C 51-73%2C 80-97%2C 103-125%2C134-156%2C 171-188%2C 212-234%2C 256-273 and 285-307;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0987c;part=1/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	920135	920188	.	-	.	ID=id-Cj0987c;Note=9 probable transmembrane helices predicted for Cj0987c by TMHMM2.0 at aa 12-31%2C 51-73%2C 80-97%2C 103-125%2C134-156%2C 171-188%2C 212-234%2C 256-273 and 285-307;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0987c;part=2/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	920252	920320	.	-	.	ID=id-Cj0987c;Note=9 probable transmembrane helices predicted for Cj0987c by TMHMM2.0 at aa 12-31%2C 51-73%2C 80-97%2C 103-125%2C134-156%2C 171-188%2C 212-234%2C 256-273 and 285-307;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0987c;part=3/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	920390	920443	.	-	.	ID=id-Cj0987c;Note=9 probable transmembrane helices predicted for Cj0987c by TMHMM2.0 at aa 12-31%2C 51-73%2C 80-97%2C 103-125%2C134-156%2C 171-188%2C 212-234%2C 256-273 and 285-307;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0987c;part=4/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	920486	920554	.	-	.	ID=id-Cj0987c;Note=9 probable transmembrane helices predicted for Cj0987c by TMHMM2.0 at aa 12-31%2C 51-73%2C 80-97%2C 103-125%2C134-156%2C 171-188%2C 212-234%2C 256-273 and 285-307;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0987c;part=5/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	920579	920647	.	-	.	ID=id-Cj0987c;Note=9 probable transmembrane helices predicted for Cj0987c by TMHMM2.0 at aa 12-31%2C 51-73%2C 80-97%2C 103-125%2C134-156%2C 171-188%2C 212-234%2C 256-273 and 285-307;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0987c;part=6/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	920663	920716	.	-	.	ID=id-Cj0987c;Note=9 probable transmembrane helices predicted for Cj0987c by TMHMM2.0 at aa 12-31%2C 51-73%2C 80-97%2C 103-125%2C134-156%2C 171-188%2C 212-234%2C 256-273 and 285-307;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0987c;part=7/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	920735	920803	.	-	.	ID=id-Cj0987c;Note=9 probable transmembrane helices predicted for Cj0987c by TMHMM2.0 at aa 12-31%2C 51-73%2C 80-97%2C 103-125%2C134-156%2C 171-188%2C 212-234%2C 256-273 and 285-307;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0987c;part=8/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	920861	920920	.	-	.	ID=id-Cj0987c;Note=9 probable transmembrane helices predicted for Cj0987c by TMHMM2.0 at aa 12-31%2C 51-73%2C 80-97%2C 103-125%2C134-156%2C 171-188%2C 212-234%2C 256-273 and 285-307;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0987c;part=9/9
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	919994	920902	.	-	.	ID=id-Cj0987c-2;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 7.7e-16;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj0987c
gi|15791399|ref|NC_002163.1|	EMBL	gene	920967	921203	.	-	.	ID=gene-Cj0988c;Name=Cj0988c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0988c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	920967	921203	.	-	0	ID=cds-CAL35106.1;Parent=gene-Cj0988c;Dbxref=EnsemblGenomes-Gn:Cj0988c,EnsemblGenomes-Tr:CAL35106,UniProtKB/TrEMBL:Q0P9R4,NCBI_GP:CAL35106.1;Name=CAL35106.1;Note=Original (2000) note: Cj0988c%2C questionable CDS%2Clen: 78 aa%3B 98.3%25 identical to TR:Q46117 (EMBL:Z36940) C. jejuni hypothetical protein. No Hp match%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Functional classification -Unknown;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0988c;product=very hypothetical protein Cj0988c;protein_id=CAL35106.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	921078	921131	.	-	.	ID=id-Cj0988c;Note=1 probable transmembrane helix predicted for Cj0988c by TMHMM2.0 at aa 25-42;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0988c
gi|15791399|ref|NC_002163.1|	EMBL	gene	921188	921394	.	+	.	ID=gene-Cj0989;Name=Cj0989;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0989
gi|15791399|ref|NC_002163.1|	EMBL	CDS	921188	921394	.	+	0	ID=cds-CAL35107.1;Parent=gene-Cj0989;Dbxref=EnsemblGenomes-Gn:Cj0989,EnsemblGenomes-Tr:CAL35107,UniProtKB/TrEMBL:Q0P9R3,NCBI_GP:CAL35107.1;Name=CAL35107.1;Note=Original (2000) note: Cj0989%2C possible membrane protein%2C len: 68 aa%3B identical to TR:Q46118 (EMBL:Z36940) C. jejuni hypothetical protein. No Hp match%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0989;product=putative membrane protein;protein_id=CAL35107.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	921197	921250	.	+	.	ID=id-Cj0989;Note=1 probable transmembrane helix predicted for Cj0989 by TMHMM2.0 at aa 4-21;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0989
gi|15791399|ref|NC_002163.1|	EMBL	gene	921397	922158	.	-	.	ID=gene-Cj0990c;Name=Cj0990c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0990c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	921397	922158	.	-	0	ID=cds-CAL35108.1;Parent=gene-Cj0990c;Dbxref=EnsemblGenomes-Gn:Cj0990c,EnsemblGenomes-Tr:CAL35108,InterPro:IPR020525,NCBI_GP:CAL35108.1;Name=CAL35108.1;Note=Original (2000) note: Cj0990c%2C unknown%2C len: 253 aa%3B identical in C-terminus to YHI1_CAMJE C. jejuni hypothetical protein fragment (94 aa). No Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj0990c;product=hypothetical protein Cj0990c;protein_id=CAL35108.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	922155	923420	.	-	.	ID=gene-Cj0991c;Name=Cj0991c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0991c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	922155	923420	.	-	0	ID=cds-CAL35109.1;Parent=gene-Cj0991c;Dbxref=EnsemblGenomes-Gn:Cj0991c,EnsemblGenomes-Tr:CAL35109,GOA:Q0P9R1,InterPro:IPR004017,InterPro:IPR009051,InterPro:IPR012257,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q0P9R1,NCBI_GP:CAL35109.1;Name=CAL35109.1;Note=Original (2000) note: Cj0991c%2C probable oxidoreductase ferredoxin-type electron transport protein%2Clen: 421%3B weak similarity to e.g. GLPC_ECOLI anaerobic glycerol-3-phosphate dehydrogenase subunit C (396 aa)%2Cfasta scores%3B opt: 280 z-score: 323.3 E(): 1e-10%2C 23.3%25 identity in 425 aa overlap%2C and GLCF_ECOLI glycolate oxidase iron-sulfur subunit (407 aa)%2C fasta scores%3B opt: 199 z-score: 231.5 E(): 1.4e-05%2C 22.3%25 identity in 413 aa overlap. 44.7%25 identity to HP0666 (annotated as glpC%2C but there are no homologs of glpA or glpB in Hp or Cj). Contains PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature%2C and 2x Pfam match to entry PF00037 fer4%2C4Fe-4S ferredoxins and related iron-sulfur cluster binding domains%3B~Updated (2006) note: Pfam domain PF02754 Cysteine-rich domain identified within CDS. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification - Energy metabolism - Electron transport;gbkey=CDS;inference=protein motif:Prosite:PS00198;locus_tag=Cj0991c;product=putative oxidoreductase ferredoxin-type electron transport protein;protein_id=CAL35109.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	922227	922418	.	-	.	ID=id-Cj0991c;Note=HMMPfam hit to PF02754%2C Cysteine-rich domain%2C score 2.4e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF02754;locus_tag=Cj0991c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	922638	922826	.	-	.	ID=id-Cj0991c-2;Note=HMMPfam hit to PF02754%2C Cysteine-rich domain%2C score 6.7e-10;gbkey=misc_feature;inference=protein motif:Pfam:PF02754;locus_tag=Cj0991c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	923190	923261	.	-	.	ID=id-Cj0991c-3;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.0013;gbkey=misc_feature;inference=protein motif:Pfam:PF00037;locus_tag=Cj0991c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	923205	923240	.	-	.	ID=id-Cj0991c-4;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00198;locus_tag=Cj0991c
gi|15791399|ref|NC_002163.1|	EMBL	gene	923422	924777	.	-	.	ID=gene-Cj0992c;Name=Cj0992c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0992c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	923422	924777	.	-	0	ID=cds-CAL35110.1;Parent=gene-Cj0992c;Dbxref=EnsemblGenomes-Gn:Cj0992c,EnsemblGenomes-Tr:CAL35110,GOA:Q0P9R0,InterPro:IPR004558,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010723,InterPro:IPR023404,UniProtKB/TrEMBL:Q0P9R0,NCBI_GP:CAL35110.1;Name=CAL35110.1;Note=Original (2000) note: Cj0992c%2C hemN%2C probable oxygen-independent coproporphyrinogen III oxidase%2C len: 451 aa%3B HEMN_ECOLI oxygen-independent coproporphyrinogen III oxidase (457 aa)%2C fasta scores%3B opt: 1283 z-score: 1443.0 E(): 0%2C 44.9%25 identity in 452 aa overlap. 56.6%25 identity to HP0665%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Heme%3B~PMID:7768836;gbkey=CDS;locus_tag=Cj0992c;product=oxygen-independent coproporphyrinogen III oxidase;protein_id=CAL35110.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	923506	923862	.	-	.	ID=id-Cj0992c;Note=HMMPfam hit to PF06969%2C HemN C-terminal region%2Cscore 6.8e-41;gbkey=misc_feature;inference=protein motif:Pfam:PF06969;locus_tag=Cj0992c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	924106	924633	.	-	.	ID=id-Cj0992c-2;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 3.5e-26;gbkey=misc_feature;inference=protein motif:Pfam:PF04055;locus_tag=Cj0992c
gi|15791399|ref|NC_002163.1|	EMBL	gene	924764	925255	.	-	.	ID=gene-Cj0993c;Name=Cj0993c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0993c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	924764	925255	.	-	0	ID=cds-CAL35111.1;Parent=gene-Cj0993c;Dbxref=EnsemblGenomes-Gn:Cj0993c,EnsemblGenomes-Tr:CAL35111,InterPro:IPR019724,NCBI_GP:CAL35111.1;Name=CAL35111.1;Note=Original (2000) note: Cj0993c%2C unknown%2C len: 163 aa%3B 30.1%25 identity to HP0664. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj0993c;product=hypothetical protein Cj0993c;protein_id=CAL35111.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	925252	926172	.	-	.	ID=gene-Cj0994c;Name=argF;gbkey=Gene;gene=argF;gene_biotype=protein_coding;locus_tag=Cj0994c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	925252	926172	.	-	0	ID=cds-CAL35112.1;Parent=gene-Cj0994c;Dbxref=EnsemblGenomes-Gn:Cj0994c,EnsemblGenomes-Tr:CAL35112,GOA:Q9PNU6,InterPro:IPR002292,InterPro:IPR006130,InterPro:IPR006131,InterPro:IPR006132,InterPro:IPR024904,PDB:3TPF,NCBI_GP:CAL35112.1;Name=CAL35112.1;Note=Original (2000) note: Cj0994c%2C argF%2C probable ornithine carbamoyltransferase%2C len: 306 aa%3B highly similar to many e.g. TCA_BACSU ornithine carbamoyltransferase%2C anabolic (EC 2.1.3.3) (319 aa)%2Cfasta scores%3B opt: 856 z-score: 1014.3 E(): 0%2C 47.0%25 identity in 296 aa overlap. No Hp ortholog. Contains PS00097 Aspartate and ornithine carbamoyltransferases signature%2C and Pfam match to entry PF00185 OTCace%2CAspartate and ornithine carbamoyltransferases%3B~Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score%2C so putative not added to product function. Functional classification -Amino acid biosynthesis - Glutamate family%3B~PMID:3968036%2C PMID:2117745;gbkey=CDS;gene=argF;inference=protein motif:Prosite:PS00097;locus_tag=Cj0994c;product=ornithine carbamoyltransferase;protein_id=CAL35112.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	925276	925749	.	-	.	ID=id-Cj0994c;Note=HMMPfam hit to PF00185%2C Aspartate/ornithine carbamoyltransferase%2C As%2C score 4.8e-46;gbkey=misc_feature;gene=argF;inference=protein motif:Pfam:PF00185;locus_tag=Cj0994c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	925756	926169	.	-	.	ID=id-Cj0994c-2;Note=HMMPfam hit to PF02729%2C Aspartate/ornithine carbamoyltransferase%2C ca%2C score 3.9e-67;gbkey=misc_feature;gene=argF;inference=protein motif:Pfam:PF02729;locus_tag=Cj0994c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	926026	926049	.	-	.	ID=id-Cj0994c-3;Note=PS00097 Aspartate and ornithine carbamoyltransferases signature;gbkey=misc_feature;gene=argF;inference=protein motif:Prosite:PS00097;locus_tag=Cj0994c
gi|15791399|ref|NC_002163.1|	EMBL	gene	926169	927152	.	-	.	ID=gene-Cj0995c;Name=hemB;gbkey=Gene;gene=hemB;gene_biotype=protein_coding;locus_tag=Cj0995c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	926169	927152	.	-	0	ID=cds-CAL35113.1;Parent=gene-Cj0995c;Dbxref=EnsemblGenomes-Gn:Cj0995c,EnsemblGenomes-Tr:CAL35113,GOA:Q0P9Q7,InterPro:IPR001731,InterPro:IPR013785,UniProtKB/TrEMBL:Q0P9Q7,NCBI_GP:CAL35113.1;Name=CAL35113.1;Note=Original (2000) note: Cj0995c%2C hemB%2C probable delta-aminolevulinic acid dehydratase%2C len: 327 aa%3B similar to many e.g. HEM2_ECOLI delta-aminolevulinic acid dehydratase (EC 4.2.1.24) (323 aa)%2C fasta scores%3B opt: 1037 z-score: 1214.2 E(): 0%2C 50.9%25 identity in 326 aa overlap. 63.7%25 identity to HP0163. Contains PS00169 Delta-aminolevulinic acid dehydratase active site%2C and Pfam match to entry PF00490 ALAD%2C Delta-aminolevulinic acid dehydratase%3B~Updated (2006) note: Characterised in Escherichia coli and Bacillus subtilis with acceptable identity scores%2C so putative not added to product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Heme%3B~PMID:1987138%2C PMID:7894023;gbkey=CDS;gene=hemB;inference=protein motif:Prosite:PS00169;locus_tag=Cj0995c;product=delta-aminolevulinic acid dehydratase;protein_id=CAL35113.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	926184	927152	.	-	.	ID=id-Cj0995c;Note=HMMPfam hit to PF00490%2C Delta-aminolevulinic acid dehydratase%2C score 2e-176;gbkey=misc_feature;gene=hemB;inference=protein motif:Pfam:PF00490;locus_tag=Cj0995c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	926391	926429	.	-	.	ID=id-Cj0995c-2;Note=PS00169 Delta-aminolevulinic acid dehydratase active site;gbkey=misc_feature;gene=hemB;inference=protein motif:Prosite:PS00169;locus_tag=Cj0995c
gi|15791399|ref|NC_002163.1|	EMBL	gene	927210	927770	.	+	.	ID=gene-Cj0996;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=Cj0996
gi|15791399|ref|NC_002163.1|	EMBL	CDS	927210	927770	.	+	0	ID=cds-CAL35114.1;Parent=gene-Cj0996;Dbxref=EnsemblGenomes-Gn:Cj0996,EnsemblGenomes-Tr:CAL35114,GOA:Q0P9Q6,InterPro:IPR000926,UniProtKB/TrEMBL:Q0P9Q6,NCBI_GP:CAL35114.1;Name=CAL35114.1;Note=Original (2000) note: Cj0996%2C ribA%2C probable GTP cyclohydrolase II%2C len: 186 aa%3B similar to many e.g. GCH2_ECOLI GTP cyclohydrolase II (EC 3.5.4.25) (196 aa)%2Cfasta scores%3B opt: 569 z-score: 678.3 E(): 1.8e-30%2C 47.2%25 identity in 193 aa overlap. 53.2%25 identity to HP0802. Contains Pfam match to entry PF00925 GTP_cyclohydro2%2C GTP cyclohydrolase II%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Riboflavin%3B~PMID:8320220%2C PMID:11024263;gbkey=CDS;gene=ribA;inference=protein motif:Pfam:PF00925;locus_tag=Cj0996;product=GTP cyclohydrolase II;protein_id=CAL35114.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	927210	927698	.	+	.	ID=id-Cj0996;Note=HMMPfam hit to PF00925%2C GTP cyclohydrolase II%2Cscore 7e-67;gbkey=misc_feature;gene=ribA;inference=protein motif:Pfam:PF00925;locus_tag=Cj0996
gi|15791399|ref|NC_002163.1|	EMBL	gene	927771	928337	.	+	.	ID=gene-Cj0997;Name=Cj0997;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0997
gi|15791399|ref|NC_002163.1|	EMBL	CDS	927771	928337	.	+	0	ID=cds-CAL35115.1;Parent=gene-Cj0997;Dbxref=EnsemblGenomes-Gn:Cj0997,EnsemblGenomes-Tr:CAL35115,GOA:Q9PNU3,InterPro:IPR003682,InterPro:IPR029063,NCBI_GP:CAL35115.1;Name=CAL35115.1;Note=Original (2000) note: Cj0997%2C probable gidB homolog. len: 188 aa%3B similar to gidB proteins from many organisms e.g. GIDB_ECOLI glucose inhibited division protein B (207 aa)%2C fasta scores%3B opt: 212 z-score: 265.9 E(): 1.6e-07%2C 24.7%25 identity in 182 aa overlap. 37.3%25 identity to HP1063%3B~Updated (2006) note: Pfam domain PF02527 Glucose inhibited division protein identified within CDS. Further support given to product function. Recent characterisation within Escherichia coli has identified GidB containing a methyltransferase fold (PMID:12001236). Thus%2C product function has now been modified to more specific family member. Functional classification - Misc%3B~PMID:12001236;gbkey=CDS;inference=protein motif:Pfam:PF02527;locus_tag=Cj0997;product=putative methyltransferase (GidB homolog);protein_id=CAL35115.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	927819	928325	.	+	.	ID=id-Cj0997;Note=HMMPfam hit to PF02527%2C Glucose inhibited division protein%2C score 1.4e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF02527;locus_tag=Cj0997
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	928323	928334	.	+	.	ID=id-Cj0997-2;Note=PS00294 Prenyl group binding site (CAAX box);gbkey=misc_feature;inference=protein motif:Prosite:PS00294;locus_tag=Cj0997
gi|15791399|ref|NC_002163.1|	EMBL	gene	928353	928925	.	-	.	ID=gene-Cj0998c;Name=Cj0998c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0998c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	928353	928925	.	-	0	ID=cds-CAL35116.1;Parent=gene-Cj0998c;Dbxref=EnsemblGenomes-Gn:Cj0998c,EnsemblGenomes-Tr:CAL35116,UniProtKB/TrEMBL:Q0P9Q4,NCBI_GP:CAL35116.1;Name=CAL35116.1;Note=Original (2000) note: Cj0998c%2C probable periplasmic protein%2C len: 190 aa%3B 33.9%25 identity to HP0305. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Paper identified linking protein to glycoprotein. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:12186869;gbkey=CDS;locus_tag=Cj0998c;product=putative periplasmic protein;protein_id=CAL35116.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	929020	930117	.	-	.	ID=gene-Cj0999c;Name=Cj0999c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj0999c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	929020	930117	.	-	0	ID=cds-CAL35117.1;Parent=gene-Cj0999c;Dbxref=EnsemblGenomes-Gn:Cj0999c,EnsemblGenomes-Tr:CAL35117,GOA:Q9PNU1,InterPro:IPR018383,NCBI_GP:CAL35117.1;Name=CAL35117.1;Note=Original (2000) note: Cj0999c%2C probable integral membrane protein%2C len: 365 aa%3B similar to hypothetical membrane proteins e.g. YEIH_ECOLI (349 aa)%2C fasta scores%3B opt: 631 z-score: 729.2 E(): 0%2C 35.7%25 identity in 347 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03601 Conserved hypothetical protein identified within CDS. Also%2C eleven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;product=putative integral membrane protein;protein_id=CAL35117.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	929038	929106	.	-	.	ID=id-Cj0999c;Note=11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34%2C 44-63%2C 83-100%2C 105-127%2C134-153%2C 163-185%2C 197-219%2C 234-256%2C 269-288%2C 303-325 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;part=1/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	929143	929211	.	-	.	ID=id-Cj0999c;Note=11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34%2C 44-63%2C 83-100%2C 105-127%2C134-153%2C 163-185%2C 197-219%2C 234-256%2C 269-288%2C 303-325 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;part=2/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	929254	929313	.	-	.	ID=id-Cj0999c;Note=11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34%2C 44-63%2C 83-100%2C 105-127%2C134-153%2C 163-185%2C 197-219%2C 234-256%2C 269-288%2C 303-325 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;part=3/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	929350	929418	.	-	.	ID=id-Cj0999c;Note=11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34%2C 44-63%2C 83-100%2C 105-127%2C134-153%2C 163-185%2C 197-219%2C 234-256%2C 269-288%2C 303-325 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;part=4/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	929461	929529	.	-	.	ID=id-Cj0999c;Note=11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34%2C 44-63%2C 83-100%2C 105-127%2C134-153%2C 163-185%2C 197-219%2C 234-256%2C 269-288%2C 303-325 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;part=5/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	929563	929631	.	-	.	ID=id-Cj0999c;Note=11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34%2C 44-63%2C 83-100%2C 105-127%2C134-153%2C 163-185%2C 197-219%2C 234-256%2C 269-288%2C 303-325 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;part=6/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	929659	929718	.	-	.	ID=id-Cj0999c;Note=11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34%2C 44-63%2C 83-100%2C 105-127%2C134-153%2C 163-185%2C 197-219%2C 234-256%2C 269-288%2C 303-325 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;part=7/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	929737	929805	.	-	.	ID=id-Cj0999c;Note=11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34%2C 44-63%2C 83-100%2C 105-127%2C134-153%2C 163-185%2C 197-219%2C 234-256%2C 269-288%2C 303-325 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;part=8/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	929818	929871	.	-	.	ID=id-Cj0999c;Note=11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34%2C 44-63%2C 83-100%2C 105-127%2C134-153%2C 163-185%2C 197-219%2C 234-256%2C 269-288%2C 303-325 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;part=9/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	929929	929988	.	-	.	ID=id-Cj0999c;Note=11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34%2C 44-63%2C 83-100%2C 105-127%2C134-153%2C 163-185%2C 197-219%2C 234-256%2C 269-288%2C 303-325 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;part=10/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	930016	930084	.	-	.	ID=id-Cj0999c;Note=11 probable transmembrane helices predicted for Cj0999c by TMHMM2.0 at aa 12-34%2C 44-63%2C 83-100%2C 105-127%2C134-153%2C 163-185%2C 197-219%2C 234-256%2C 269-288%2C 303-325 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj0999c;part=11/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	929092	930066	.	-	.	ID=id-Cj0999c-2;Note=HMMPfam hit to PF03601%2C Conserved hypothetical protein%2C score 3.7e-156;gbkey=misc_feature;inference=protein motif:Pfam:PF03601;locus_tag=Cj0999c
gi|15791399|ref|NC_002163.1|	EMBL	gene	930230	931111	.	+	.	ID=gene-Cj1000;Name=Cj1000;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1000
gi|15791399|ref|NC_002163.1|	EMBL	CDS	930230	931111	.	+	0	ID=cds-CAL35118.1;Parent=gene-Cj1000;Dbxref=EnsemblGenomes-Gn:Cj1000,EnsemblGenomes-Tr:CAL35118,GOA:Q0P9Q2,InterPro:IPR000847,InterPro:IPR005119,InterPro:IPR011991,UniProtKB/TrEMBL:Q0P9Q2,NCBI_GP:CAL35118.1;Name=CAL35118.1;Note=Original (2000) note: Cj1000%2C probable transcriptional regulator%2C len: 293 aa%3B similar to members of the lysR family e.g. YEIE_ECOLI hypothetical transcriptional regulator (293 aa)%2C fasta scores%3B opt: 332 z-score: 390.5 E(): 1.9e-14%2C 24.3%25 identity in 288 aa overlap. No Hp match. Contains Pfam match to entry PF00126 HTH_1%2C Bacterial regulatory helix-turn-helix proteins%2ClysR family%2C and probable helix-turn-helix motif at aa 17-38 (Score 1147%2C +3.09 SD)%3B~Updated (2006) note: Pfam domain PF03466 LysR substrate binding domain identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet%2C so putative kept in product function. Functional classification - Broad regulatory functions;gbkey=CDS;inference=protein motif:Pfam:PF03466;locus_tag=Cj1000;product=putative transcriptional regulator (LysR family);protein_id=CAL35118.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	930236	930415	.	+	.	ID=id-Cj1000;Note=HMMPfam hit to PF00126%2C Bacterial regulatory helix-turn-helix%2C score 7e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF00126;locus_tag=Cj1000
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	930482	931108	.	+	.	ID=id-Cj1000-2;Note=HMMPfam hit to PF03466%2C LysR substrate binding domain%2C score 7.7e-23;gbkey=misc_feature;inference=protein motif:Pfam:PF03466;locus_tag=Cj1000
gi|15791399|ref|NC_002163.1|	EMBL	gene	931191	933059	.	+	.	ID=gene-Cj1001;Name=rpoD;gbkey=Gene;gene=rpoD;gene_biotype=protein_coding;locus_tag=Cj1001
gi|15791399|ref|NC_002163.1|	EMBL	CDS	931191	933059	.	+	0	ID=cds-CAL35119.1;Parent=gene-Cj1001;Dbxref=EnsemblGenomes-Gn:Cj1001,EnsemblGenomes-Tr:CAL35119,GOA:Q0P9Q1,InterPro:IPR000943,InterPro:IPR007624,InterPro:IPR007627,InterPro:IPR007630,InterPro:IPR009042,InterPro:IPR011991,InterPro:IPR012760,InterPro:IPR013324,InterPro:IPR013325,InterPro:IPR014284,InterPro:IPR028630,UniProtKB/TrEMBL:Q0P9Q1,NCBI_GP:CAL35119.1;Name=CAL35119.1;Note=Original (2000) note: Cj1001%2C rpoD%2C RNA polymerase sigma factor (sigma-70)%2C len: 622 aa%3B 99.7%25 identical to TR:O52921 (EMBL:AJ002379) RNA polymerase sigma factor (622 aa)%2C and similar to many e.g. RPSD_ECOLI RNA polymerase sigma factor RPOD (SIGMA-70) (613 aa)%2C fasta scores%3B opt: 1203 z-score: 1120.9 E(): 0%2C 35.9%25 identity in 626 aa overlap. 65.6%25 identity to HP0088. Contains PS00715 and PS00716 Sigma-70 factors family signatures 1 and 2%2C Pfam match to entry PF00140 sigma70%2C and probable helix-turn-helix motif at aa 579-600 (Score 1989%2C +5.96 SD)%3B~Updated (2006) note: Additional Pfam matches identified giving further support. Pfam domains PF04546 Sigma-70%2C non-essential region%2C PF04542 %26 PF04539 %26PF04545 Sigma-70 regions were all identified within CDS. Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Broad regulatory functions%3B~PMID:8858155;gbkey=CDS;gene=rpoD;inference=protein motif:Prosite:PS00716;locus_tag=Cj1001;product=RNA polymerase sigma factor (sigma-70);protein_id=CAL35119.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	931497	931607	.	+	.	ID=id-Cj1001;Note=HMMPfam hit to PF00140%2C Sigma-70 factor%2C region%2Cscore 8.5e-15;gbkey=misc_feature;gene=rpoD;inference=protein motif:Pfam:PF00140;locus_tag=Cj1001
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	931626	932168	.	+	.	ID=id-Cj1001-2;Note=HMMPfam hit to PF04546%2C Sigma-70%2C non-essential region%2C score 0.01;gbkey=misc_feature;gene=rpoD;inference=protein motif:Pfam:PF04546;locus_tag=Cj1001
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	932343	932555	.	+	.	ID=id-Cj1001-3;Note=HMMPfam hit to PF04542%2C Sigma-70 region%2C score 6.2e-28;gbkey=misc_feature;gene=rpoD;inference=protein motif:Pfam:PF04542;locus_tag=Cj1001
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	932415	932456	.	+	.	ID=id-Cj1001-4;Note=PS00715 Sigma-70 factors family signature 1;gbkey=misc_feature;gene=rpoD;inference=protein motif:Prosite:PS00715;locus_tag=Cj1001
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	932565	932813	.	+	.	ID=id-Cj1001-5;Note=HMMPfam hit to PF04539%2C Sigma-70 region%2C score 5.3e-35;gbkey=misc_feature;gene=rpoD;inference=protein motif:Pfam:PF04539;locus_tag=Cj1001
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	932847	933011	.	+	.	ID=id-Cj1001-6;Note=HMMPfam hit to PF04545%2C Sigma-70%2C region%2C score 7.3e-19;gbkey=misc_feature;gene=rpoD;inference=protein motif:Pfam:PF04545;locus_tag=Cj1001
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	932925	933005	.	+	.	ID=id-Cj1001-7;Note=PS00716 Sigma-70 factors family signature 2;gbkey=misc_feature;gene=rpoD;inference=protein motif:Prosite:PS00716;locus_tag=Cj1001
gi|15791399|ref|NC_002163.1|	EMBL	gene	933075	933587	.	-	.	ID=gene-Cj1002c;Name=Cj1002c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1002c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	933075	933587	.	-	0	ID=cds-CAL35120.1;Parent=gene-Cj1002c;Dbxref=EnsemblGenomes-Gn:Cj1002c,EnsemblGenomes-Tr:CAL35120,GOA:Q0P9Q0,InterPro:IPR013078,InterPro:IPR029033,UniProtKB/TrEMBL:Q0P9Q0,NCBI_GP:CAL35120.1;Name=CAL35120.1;Note=Original (2000) note: Cj1002c%2C unknown%2C len: 170 aa%3B similar to hypothetical proteins e.g. TR:O67234 (EMBL:AE000727) Aquifex aeolicus AQ_1173 (149 aa)%2C fasta scores%3B opt: 185 z-score: 235.0 E(): 8.6e-06%2C 34.2%25 identity in 117 aa overlap. No Hp match%3B~Updated (2006) note: Running own Pfam search allowed identification of Pfam domain PF00300 Phosphoglycerate mutase family. This is an enzyme that catalyses reactions involving the transfer of phospho groups between the 3 carbon atoms of phosphoglycerate. Not specifically characterised%2C so putative kept in product function. Functional classification - Energy metabolism -Glycolysis;gbkey=CDS;inference=protein motif:Pfam:PF00300;locus_tag=Cj1002c;product=putative phosphoglycerate/bisphosphoglycerate mutase;protein_id=CAL35120.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	933584	934102	.	-	.	ID=gene-Cj1003c;Name=Cj1003c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1003c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	933584	934102	.	-	0	ID=cds-CAL35121.1;Parent=gene-Cj1003c;Dbxref=EnsemblGenomes-Gn:Cj1003c,EnsemblGenomes-Tr:CAL35121,GOA:Q0P9P9,InterPro:IPR002610,InterPro:IPR022764,UniProtKB/TrEMBL:Q0P9P9,NCBI_GP:CAL35121.1;Name=CAL35121.1;Note=Original (2000) note: Cj1003c%2C probable integral membrane protein%2C len: 172 aa%3B similar to hypothetical proteins e.g. TR:O59166 (EMBL:AP000006) Pyrococcus horikoshii PH1497 (197 aa)%2C fasta scores%3B opt: 233 z-score: 292.8 E(): 5.2e-09%2C 30.8%25 identity in 172 aa overlap. No Hp ortholog%3B~Updated (2006) note: Pfam domain PF01694 Rhomboid family identified within CDS. Also%2C five probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific charactersation carried out yet%2C so putative kept in product function. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1003c;product=putative integral membrane protein;protein_id=CAL35121.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	933644	933712	.	-	.	ID=id-Cj1003c;Note=5 probable transmembrane helices predicted for Cj1003c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-95%2C 105-124 and 131-153;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1003c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	933731	933790	.	-	.	ID=id-Cj1003c;Note=5 probable transmembrane helices predicted for Cj1003c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-95%2C 105-124 and 131-153;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1003c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	933818	933886	.	-	.	ID=id-Cj1003c;Note=5 probable transmembrane helices predicted for Cj1003c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-95%2C 105-124 and 131-153;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1003c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	933905	933973	.	-	.	ID=id-Cj1003c;Note=5 probable transmembrane helices predicted for Cj1003c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-95%2C 105-124 and 131-153;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1003c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	934016	934084	.	-	.	ID=id-Cj1003c;Note=5 probable transmembrane helices predicted for Cj1003c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-95%2C 105-124 and 131-153;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1003c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	933587	934012	.	-	.	ID=id-Cj1003c-2;Note=HMMPfam hit to PF01694%2C Rhomboid family%2C score 2.2e-38;gbkey=misc_feature;inference=protein motif:Pfam:PF01694;locus_tag=Cj1003c
gi|15791399|ref|NC_002163.1|	EMBL	gene	934201	934617	.	+	.	ID=gene-Cj1004;Name=Cj1004;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1004
gi|15791399|ref|NC_002163.1|	EMBL	CDS	934201	934617	.	+	0	ID=cds-CAL35122.1;Parent=gene-Cj1004;Dbxref=EnsemblGenomes-Gn:Cj1004,EnsemblGenomes-Tr:CAL35122,InterPro:IPR021533,UniProtKB/TrEMBL:Q0P9P8,NCBI_GP:CAL35122.1;Name=CAL35122.1;Note=Original (2000) note: Cj1004%2C probable periplasmic protein%2C len: 138 aa%3B very weak similarity to TR:P75137 (EMBL:AE000019) Mycoplasma pneumoniae putative lipoprotein E09_orf129 (129 aa)%2C fasta scores%3B opt: 110 z-score: 147.3 E(): 0.66%2C 34.9%25 identity in 129 aa overlap. No Hp match. Also similar to Cj1626c (38.6%25 identity in 140 aa overlap)%3B~Updated (2006) note: Literature search identified paper giving further clues on product funciton. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:15554967;gbkey=CDS;locus_tag=Cj1004;product=putative periplasmic protein;protein_id=CAL35122.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	934626	936242	.	-	.	ID=gene-Cj1005c;Name=Cj1005c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1005c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	934626	936242	.	-	0	ID=cds-CAL35123.1;Parent=gene-Cj1005c;Dbxref=EnsemblGenomes-Gn:Cj1005c,EnsemblGenomes-Tr:CAL35123,GOA:Q0P9P7,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR003960,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9P7,NCBI_GP:CAL35123.1;Name=CAL35123.1;Note=Original (2000) note: Cj1005c%2C probable membrane bound ATPase%2C len: 538 aa%3B similar to many members of the AAA family e.g. FTSH_BACSU cell division protein FTSH homolog (EC 3.4.24.-) (637 aa)%2C fasta scores%3B opt: 901 z-score: 909.6 E(): 0%2C 36.3%25 identity in 518 aa overlap. 43.8%25 identity to HP0286. Also similar to ftsH Cj1116c (36.2%25 identity in 578 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00674 AAA-protein family signature%2C and Pfam match to entry PF00004 AAA%2CATPases associated with various cellular activities (AAA)%3B~Updated (2006) note: Pfam domain PF06480 FtsH Extracellular protein. This domain is found in FtsH family proteins. FtsH is the only membrane-bound ATP-dependent protease universally conserved in prokaryotes. Putative kept within product function. Functional classification -Misc%3B~PMID:8892813%2C PMID:9244252 and PMID:96132941;gbkey=CDS;inference=protein motif:Prosite:PS00674;locus_tag=Cj1005c;product=putative membrane bound ATPase;protein_id=CAL35123.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	935913	935981	.	-	.	ID=id-Cj1005c;Note=2 probable transmembrane helices predicted for Cj1005c by TMHMM2.0 at aa 6-23 and 88-110;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1005c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	936174	936227	.	-	.	ID=id-Cj1005c;Note=2 probable transmembrane helices predicted for Cj1005c by TMHMM2.0 at aa 6-23 and 88-110;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1005c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	934638	935120	.	-	.	ID=id-Cj1005c-2;Note=HMMPfam hit to PF01434%2C Peptidase family M41%2C score 0.00033;gbkey=misc_feature;inference=protein motif:Pfam:PF01434;locus_tag=Cj1005c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	935136	935684	.	-	.	ID=id-Cj1005c-3;Note=HMMPfam hit to PF00004%2C ATPase family associated with various c%2C score 3.2e-83;gbkey=misc_feature;inference=protein motif:Pfam:PF00004;locus_tag=Cj1005c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	935325	935381	.	-	.	ID=id-Cj1005c-4;Note=PS00674 AAA-protein family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00674;locus_tag=Cj1005c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	935646	935669	.	-	.	ID=id-Cj1005c-5;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1005c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	935760	936161	.	-	.	ID=id-Cj1005c-6;Note=HMMPfam hit to PF06480%2C FtsH Extracellular%2C score 5e-36;gbkey=misc_feature;inference=protein motif:Pfam:PF06480;locus_tag=Cj1005c
gi|15791399|ref|NC_002163.1|	EMBL	gene	936246	937496	.	-	.	ID=gene-Cj1006c;Name=Cj1006c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1006c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	936246	937496	.	-	0	ID=cds-CAL35124.1;Parent=gene-Cj1006c;Dbxref=EnsemblGenomes-Gn:Cj1006c,EnsemblGenomes-Tr:CAL35124,GOA:Q0P9P6,InterPro:IPR005839,InterPro:IPR006467,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013848,InterPro:IPR020612,InterPro:IPR023404,InterPro:IPR023970,UniProtKB/TrEMBL:Q0P9P6,NCBI_GP:CAL35124.1;Name=CAL35124.1;Note=Original (2000) note: Cj1006c%2C unknown%2C len: 416 aa%3B similar to hypothetical proteins belonging to the UPF0004 family e.g. Y16R_MYCIO (438 aa)%2C fasta scores%3B opt: 580 z-score: 664.7 E(): 1e-29%2C 30.5%25 identity in 413 aa overlap. 50.1%25 identity to HP0285. Also similar to Cj0458c (28.6%25 identity in 391 aa overlap) and Cj1454c (28.4%25 identity in 419 aa overlap). Contains PS01278 Uncharacterized protein family UPF0004 signature and Pfam match to entry PF00919 UPF0004%3B~Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily identified within CDS. TIGRFAM TIGR01579 MiaB-like tRNA modifying enzyme has also been identified. Characterisation papers have also been attached. Product modified based on motif match and supporting literature. Some characterisation in Escherichia coli%2C however%2Cputative kept within product function. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:10572129%2C PMID:11882645 and PMID:11313137;gbkey=CDS;inference=protein motif:Prosite:PS01278;locus_tag=Cj1006c;product=putative MiaB-like tRNA modifying enzyme;protein_id=CAL35124.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	936585	937088	.	-	.	ID=id-Cj1006c;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 1.5e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF04055;locus_tag=Cj1006c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	937026	937088	.	-	.	ID=id-Cj1006c-2;Note=PS01278 Uncharacterized protein family UPF0004 signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01278;locus_tag=Cj1006c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	937212	937487	.	-	.	ID=id-Cj1006c-3;Note=HMMPfam hit to PF00919%2C Uncharacterized protein family UPF0004%2C score 8.5e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF00919;locus_tag=Cj1006c
gi|15791399|ref|NC_002163.1|	EMBL	gene	937493	939064	.	-	.	ID=gene-Cj1007c;Name=Cj1007c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1007c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	937493	939064	.	-	0	ID=cds-CAL35125.1;Parent=gene-Cj1007c;Dbxref=EnsemblGenomes-Gn:Cj1007c,EnsemblGenomes-Tr:CAL35125,GOA:Q0P9P5,InterPro:IPR006685,InterPro:IPR010920,InterPro:IPR011066,UniProtKB/TrEMBL:Q0P9P5,NCBI_GP:CAL35125.1;Name=CAL35125.1;Note=Original (2000) note: Cj1007c%2C probable membrane protein%2C len: 523 aa%3B similar in C-terminus to hypothetical proteins e.g. Y700_METJA hypothetical protein MJ0700 (324 aa)%2C fasta scores%3B opt: 281 z-score: 300.2 E(): 2e-09%2C 29.0%25 identity in 276 aa overlap. 37.4%25 identity to HP0284%3B~Updated (2006) note: Pfam domain PF00924 Mechanosensitive ion channel identified within CDS. Also%2Cthree probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Transport/binding proteins - Other%3B~PMID:12446901;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1007c;product=putative mechanosensitive ion channel family protein;protein_id=CAL35125.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	938105	938164	.	-	.	ID=id-Cj1007c;Note=3 probable transmembrane helices predicted for Cj1007c by TMHMM2.0 at aa 221-243%2C 264-286 and 301-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1007c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	938207	938275	.	-	.	ID=id-Cj1007c;Note=3 probable transmembrane helices predicted for Cj1007c by TMHMM2.0 at aa 221-243%2C 264-286 and 301-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1007c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	938336	938404	.	-	.	ID=id-Cj1007c;Note=3 probable transmembrane helices predicted for Cj1007c by TMHMM2.0 at aa 221-243%2C 264-286 and 301-320;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1007c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	937589	938293	.	-	.	ID=id-Cj1007c-2;Note=HMMPfam hit to PF00924%2C Mechanosensitive ion channel%2C score 1.1e-24;gbkey=misc_feature;inference=protein motif:Pfam:PF00924;locus_tag=Cj1007c
gi|15791399|ref|NC_002163.1|	EMBL	gene	939061	940116	.	-	.	ID=gene-Cj1008c;Name=aroB;gbkey=Gene;gene=aroB;gene_biotype=protein_coding;locus_tag=Cj1008c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	939061	940116	.	-	0	ID=cds-CAL35126.1;Parent=gene-Cj1008c;Dbxref=EnsemblGenomes-Gn:Cj1008c,EnsemblGenomes-Tr:CAL35126,GOA:Q9PNT2,InterPro:IPR016037,NCBI_GP:CAL35126.1;Name=CAL35126.1;Note=Original (2000) note: Cj1008c%2C aroB%2C probable 3-dehydroquinate synthase%2C len: 351 aa%3B similar to many e.g. AROB_ECOLI 3-dehydroquinate synthase (EC 4.6.1.3) (362 aa)%2C fasta scores%3B opt: 726 z-score: 831.8 E(): 0%2C36.3%25 identity in 333 aa overlap. 51.1%25 identity to HP0283%3B~Updated (2006) note: Pfam domain PF01761 3-dehydroquinate synthase identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Aromatic amino acid family%3B~PMID:6386050;gbkey=CDS;gene=aroB;inference=protein motif:Pfam:PF01761;locus_tag=Cj1008c;product=3-dehydroquinate synthase;protein_id=CAL35126.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	939166	940098	.	-	.	ID=id-Cj1008c;Note=HMMPfam hit to PF01761%2C 3-dehydroquinate synthase%2Cscore 7.1e-147;gbkey=misc_feature;gene=aroB;inference=protein motif:Pfam:PF01761;locus_tag=Cj1008c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	939748	939780	.	-	.	ID=id-Cj1008c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=aroB;inference=protein motif:Prosite:PS00013;locus_tag=Cj1008c
gi|15791399|ref|NC_002163.1|	EMBL	gene	940162	941562	.	-	.	ID=gene-Cj1009c;Name=Cj1009c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1009c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	940162	941562	.	-	0	ID=cds-CAL35127.1;Parent=gene-Cj1009c;Dbxref=EnsemblGenomes-Gn:Cj1009c,EnsemblGenomes-Tr:CAL35127,GOA:Q0P9P3,InterPro:IPR006037,UniProtKB/TrEMBL:Q0P9P3,NCBI_GP:CAL35127.1;Name=CAL35127.1;Note=Original (2000) note: Cj1009c%2C unknown%2C len: 466 aa%3B 29.1%25 identity to HP0282%3B~Updated (2006) note: Pfam domain PF02080 TrkA-C domain identified within CDS. The TrkA-C domain is typically found next to the -N domain. Currently unknown function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02080;locus_tag=Cj1009c;product=conserved hypothetical proetin Cj1009c;protein_id=CAL35127.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	940918	941121	.	-	.	ID=id-Cj1009c;Note=HMMPfam hit to PF02080%2C TrkA-C domain%2C score 2.6e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF02080;locus_tag=Cj1009c
gi|15791399|ref|NC_002163.1|	EMBL	gene	941592	942713	.	+	.	ID=gene-Cj1010;Name=tgt;gbkey=Gene;gene=tgt;gene_biotype=protein_coding;locus_tag=Cj1010
gi|15791399|ref|NC_002163.1|	EMBL	CDS	941592	942713	.	+	0	ID=cds-CAL35128.1;Parent=gene-Cj1010;Dbxref=EnsemblGenomes-Gn:Cj1010,EnsemblGenomes-Tr:CAL35128,GOA:Q9PNT0,InterPro:IPR002616,InterPro:IPR004803,NCBI_GP:CAL35128.1;Name=CAL35128.1;Note=Original (2000) note: Cj1010%2C tgt%2C probable queuine tRNA-ribosyltransferase%2C len: 373 aa%3B similar to many e.g. TGT_ECOLI queuine tRNA-ribosyltransferase (EC 2.4.2.29) (375 aa)%2C fasta scores%3B opt: 1016 z-score: 1190.9 E(): 0%2C41.3%25 identity in 373 aa overlap. 56.7%25 identity to HP0281%3B~Updated (2006) note: Pfam domain PF01702 Queuine tRNA-ribosyltransferase identified within CDS. Further support given to product function. Characterised in Escherishia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:9055203;gbkey=CDS;gene=tgt;inference=protein motif:Pfam:PF01702;locus_tag=Cj1010;product=queuine tRNA-ribosyltransferase;protein_id=CAL35128.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	941967	942698	.	+	.	ID=id-Cj1010;Note=HMMPfam hit to PF01702%2C Queuine tRNA-ribosyltransferase%2C score 4.9e-110;gbkey=misc_feature;gene=tgt;inference=protein motif:Pfam:PF01702;locus_tag=Cj1010
gi|15791399|ref|NC_002163.1|	EMBL	gene	942715	943482	.	+	.	ID=gene-Cj1011;Name=Cj1011;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1011
gi|15791399|ref|NC_002163.1|	EMBL	CDS	942715	943482	.	+	0	ID=cds-CAL35129.1;Parent=gene-Cj1011;Dbxref=EnsemblGenomes-Gn:Cj1011,EnsemblGenomes-Tr:CAL35129,GOA:Q0P9P1,InterPro:IPR002523,UniProtKB/TrEMBL:Q0P9P1,NCBI_GP:CAL35129.1;Name=CAL35129.1;Note=Original (2000) note: Cj1011%2C probable membrane protein%2C len: 255 aa%3B no Hp match%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Running own Pfam search identified PF01544 CorA-like Mg2+ transporter protein. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet. Putative kept in product function. Functional classification - Transport/binding proteins - Cations;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1011;product=putative CorA-like Mg2+ transporter protein;protein_id=CAL35129.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	943252	943320	.	+	.	ID=id-Cj1011;Note=2 probable transmembrane helices predicted for Cj1011 by TMHMM2.0 at aa 180-202 and 217-236;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1011;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	943363	943422	.	+	.	ID=id-Cj1011;Note=2 probable transmembrane helices predicted for Cj1011 by TMHMM2.0 at aa 180-202 and 217-236;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1011;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	943535	943611	.	+	.	ID=gene-tRNA-Arg-2;Name=tRNA-Arg;gbkey=Gene;gene=tRNA-Arg;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	943535	943611	.	+	.	ID=rna-tRNA-Arg-2;Parent=gene-tRNA-Arg-2;Note=tRNA Arg anticodon GCG%2C Cove score 83.29;gbkey=tRNA;gene=tRNA-Arg;product=tRNA-Arg
gi|15791399|ref|NC_002163.1|	EMBL	exon	943535	943611	.	+	.	ID=exon-tRNA-Arg-2-1;Parent=rna-tRNA-Arg-2;Note=tRNA Arg anticodon GCG%2C Cove score 83.29;gbkey=tRNA;gene=tRNA-Arg;product=tRNA-Arg
gi|15791399|ref|NC_002163.1|	EMBL	gene	943614	944063	.	-	.	ID=gene-Cj1012c;Name=Cj1012c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1012c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	943614	944063	.	-	0	ID=cds-CAL35130.1;Parent=gene-Cj1012c;Dbxref=EnsemblGenomes-Gn:Cj1012c,EnsemblGenomes-Tr:CAL35130,UniProtKB/TrEMBL:Q0P9P0,NCBI_GP:CAL35130.1;Name=CAL35130.1;Note=Original (2000) note: Cj1012c%2C possible membrane protein%2C len: 149 aa%3B no Hp match%3B~Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1012c;product=putative membrane protein;protein_id=CAL35130.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	943995	944054	.	-	.	ID=id-Cj1012c;Note=1 probable transmembrane helix predicted for Cj1012c by TMHMM2.0 at aa 4-23;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1012c
gi|15791399|ref|NC_002163.1|	EMBL	gene	944080	947325	.	-	.	ID=gene-Cj1013c;Name=Cj1013c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1013c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	944080	947325	.	-	0	ID=cds-CAL35131.1;Parent=gene-Cj1013c;Dbxref=EnsemblGenomes-Gn:Cj1013c,EnsemblGenomes-Tr:CAL35131,GOA:Q0P9N9,InterPro:IPR002541,InterPro:IPR007816,UniProtKB/TrEMBL:Q0P9N9,NCBI_GP:CAL35131.1;Name=CAL35131.1;Note=Original (2000) note: Cj1013c%2C probable membrane protein%2C len: 1081 aa%3B contains three domains%3B aa 1-90 contains three membrane spanning domains%3B aa 90-780 is non-membrane%2C and aa 780-1081 contains ten possible membrane spanning domains. Some similarity in C-teminal membrane domain to eukaryotic proteins e.g. CCSA_CHLRE cytochrome C biogenesis protein CCSA (353 aa)%2C fasta scores%3B opt: 459 z-score: 515.4 E(): 2.1e-21%2C 36.0%25 identity in 267 aa overlap%2C and to prokaryotic equivalents e.g. CCMF_ECOLI cytochrome C-type biogenesis protein CCMF (647 aa)%3B BLASTP scores%3B E %3D 0.20%2C 24%25 identity in 293 aa overlap. 39.0%25 identity to HP0378 (domains 2+3 only)%3B~Updated (2006) note: Twelve probable transmembrane helices predicted by TMHMM2.0. Pfam domain PF01578 Cytochrome C assembly protein identified within CDS. Product function modified based on motif match. Some characterisation within Wolinella succinogenes and Escherichia coli%2C however%2C identity scores were marginal. Putative kept within product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:10672190%2C PMID:11069671%2C PMID:16629661;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;product=putative cytochrome C biogenesis protein;protein_id=CAL35131.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	944113	944172	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	944215	944283	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	944302	944358	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	944401	944469	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	944530	944598	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	944677	944736	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	944749	944817	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	944845	944913	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	944947	945015	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	947026	947094	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	947128	947187	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	947230	947289	.	-	.	ID=id-Cj1013c;Note=12 probable transmembrane helices predicted for Cj1013c by TMHMM2.0 at aa 13-32%2C 47-66%2C 78-100%2C 771-793%2C805-827%2C 837-859%2C 864-883%2C 910-932%2C 953-975%2C 990-1008%2C1015-1037 and 1052-1071;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1013c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	944197	944817	.	-	.	ID=id-Cj1013c-2;Note=HMMPfam hit to PF01578%2C Cytochrome C assembly protein%2C score 3.8e-49;gbkey=misc_feature;inference=protein motif:Pfam:PF01578;locus_tag=Cj1013c
gi|15791399|ref|NC_002163.1|	EMBL	gene	947343	948038	.	-	.	ID=gene-Cj1014c;Name=livF;gbkey=Gene;gene=livF;gene_biotype=protein_coding;locus_tag=Cj1014c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	947343	948038	.	-	0	ID=cds-CAL35132.1;Parent=gene-Cj1014c;Dbxref=EnsemblGenomes-Gn:Cj1014c,EnsemblGenomes-Tr:CAL35132,GOA:Q0P9N8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9N8,NCBI_GP:CAL35132.1;Name=CAL35132.1;Note=Original (2000) note: Cj1014c%2C livF%2C probable branched-chain amino-acid ABC transport system ATP-binding protein%2C len: 231 aa%3B similar to e.g. LIVF_ECOLI high-affinity branched-chain amino acid transport ATP-binding protein (237 aa)%2C fasta scores%3B opt: 686 z-score: 797.6 E(): 0%2C 46.4%25 identity in 233 aa overlap. No Hp ortholog. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%3B~Updated (2006) note: Characterised within Pseudomonas aeruginosa and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:2120183%2C PMID:1429514%2C PMID:2195019;gbkey=CDS;gene=livF;inference=protein motif:Prosite:PS00211;locus_tag=Cj1014c;product=branched-chain amino-acid ABC transport system ATP-binding protein;protein_id=CAL35132.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	947418	947960	.	-	.	ID=id-Cj1014c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 1.7e-42;gbkey=misc_feature;gene=livF;inference=protein motif:Pfam:PF00005;locus_tag=Cj1014c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	947601	947645	.	-	.	ID=id-Cj1014c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=livF;inference=protein motif:Prosite:PS00211;locus_tag=Cj1014c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	947916	947939	.	-	.	ID=id-Cj1014c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=livF;inference=protein motif:Prosite:PS00017;locus_tag=Cj1014c
gi|15791399|ref|NC_002163.1|	EMBL	gene	948025	948795	.	-	.	ID=gene-Cj1015c;Name=livG;gbkey=Gene;gene=livG;gene_biotype=protein_coding;locus_tag=Cj1015c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	948025	948795	.	-	0	ID=cds-CAL35133.1;Parent=gene-Cj1015c;Dbxref=EnsemblGenomes-Gn:Cj1015c,EnsemblGenomes-Tr:CAL35133,GOA:Q0P9N7,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9N7,NCBI_GP:CAL35133.1;Name=CAL35133.1;Note=Original (2000) note: Cj1015c%2C livG%2C probable branched-chain amino-acid ABC transport system ATP-binding protein%2C len: 256 aa%3B similar to e.g. LIVG_ECOLI high-affinity branched-chain amino acid transport ATP-binding protein (255 aa)%2C fasta scores%3B opt: 680 z-score: 800.2 E(): 0%2C 41.2%25 identity in 250 aa overlap. No Hp ortholog. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%3B~Updated (2006) note: Characterised within Pseudomonas aeruginosa and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:2120183%2C PMID:1429514%2C PMID:2195019;gbkey=CDS;gene=livG;inference=protein motif:Prosite:PS00211;locus_tag=Cj1015c;product=branched-chain amino-acid ABC transport system ATP-binding protein;protein_id=CAL35133.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	948115	948714	.	-	.	ID=id-Cj1015c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 1.5e-57;gbkey=misc_feature;gene=livG;inference=protein motif:Pfam:PF00005;locus_tag=Cj1015c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	948301	948345	.	-	.	ID=id-Cj1015c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=livG;inference=protein motif:Prosite:PS00211;locus_tag=Cj1015c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	948514	948561	.	-	.	ID=id-Cj1015c-3;Note=PS00063 Aldo/keto reductase family putative active site signature;gbkey=misc_feature;gene=livG;inference=protein motif:Prosite:PS00063;locus_tag=Cj1015c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	948670	948693	.	-	.	ID=id-Cj1015c-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=livG;inference=protein motif:Prosite:PS00017;locus_tag=Cj1015c
gi|15791399|ref|NC_002163.1|	EMBL	gene	948792	949844	.	-	.	ID=gene-Cj1016c;Name=livM;gbkey=Gene;gene=livM;gene_biotype=protein_coding;locus_tag=Cj1016c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	948792	949844	.	-	0	ID=cds-CAL35134.1;Parent=gene-Cj1016c;Dbxref=EnsemblGenomes-Gn:Cj1016c,EnsemblGenomes-Tr:CAL35134,GOA:Q0P9N6,InterPro:IPR001851,UniProtKB/TrEMBL:Q0P9N6,NCBI_GP:CAL35134.1;Name=CAL35134.1;Note=Original (2000) note: Cj1016c%2C livM%2C probable branched-chain amino-acid ABC transport system permease protein%2C len: 350 aa%3B similar to e.g. LIVM_ECOLI high-affinity branched-chain amino acid transport permease protein (425 aa) fasta scores%3B opt: 239 z-score: 284.9 E(): 1.4e-08%2C 31.5%25 identity in 321 aa overlap. No Hp ortholog%3B~Updated (2006) note: Eight probable transmembrane helices predicted by TMHMM2.0. Pfam domain PF02653 Branched-chain amino acid transport system / permease component. Characterised in Escherichia coli with marginal identity score. Appropriate motifs present. Putative removed from product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:2120183%2C PMID:1429514%2C PMID:2195019;gbkey=CDS;gene=livM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1016c;product=branched-chain amino-acid ABC transport system permease protein;protein_id=CAL35134.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	948873	948926	.	-	.	ID=id-Cj1016c;Note=8 probable transmembrane helices predicted for Cj1016c by TMHMM2.0 at aa 7-29%2C 34-51%2C 58-80%2C 104-126%2C133-155%2C 170-191%2C 257-279 and 307-324;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1016c;part=1/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	949008	949076	.	-	.	ID=id-Cj1016c;Note=8 probable transmembrane helices predicted for Cj1016c by TMHMM2.0 at aa 7-29%2C 34-51%2C 58-80%2C 104-126%2C133-155%2C 170-191%2C 257-279 and 307-324;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1016c;part=2/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	949272	949337	.	-	.	ID=id-Cj1016c;Note=8 probable transmembrane helices predicted for Cj1016c by TMHMM2.0 at aa 7-29%2C 34-51%2C 58-80%2C 104-126%2C133-155%2C 170-191%2C 257-279 and 307-324;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1016c;part=3/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	949380	949448	.	-	.	ID=id-Cj1016c;Note=8 probable transmembrane helices predicted for Cj1016c by TMHMM2.0 at aa 7-29%2C 34-51%2C 58-80%2C 104-126%2C133-155%2C 170-191%2C 257-279 and 307-324;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1016c;part=4/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	949467	949535	.	-	.	ID=id-Cj1016c;Note=8 probable transmembrane helices predicted for Cj1016c by TMHMM2.0 at aa 7-29%2C 34-51%2C 58-80%2C 104-126%2C133-155%2C 170-191%2C 257-279 and 307-324;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1016c;part=5/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	949605	949673	.	-	.	ID=id-Cj1016c;Note=8 probable transmembrane helices predicted for Cj1016c by TMHMM2.0 at aa 7-29%2C 34-51%2C 58-80%2C 104-126%2C133-155%2C 170-191%2C 257-279 and 307-324;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1016c;part=6/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	949692	949745	.	-	.	ID=id-Cj1016c;Note=8 probable transmembrane helices predicted for Cj1016c by TMHMM2.0 at aa 7-29%2C 34-51%2C 58-80%2C 104-126%2C133-155%2C 170-191%2C 257-279 and 307-324;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1016c;part=7/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	949758	949826	.	-	.	ID=id-Cj1016c;Note=8 probable transmembrane helices predicted for Cj1016c by TMHMM2.0 at aa 7-29%2C 34-51%2C 58-80%2C 104-126%2C133-155%2C 170-191%2C 257-279 and 307-324;gbkey=misc_feature;gene=livM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1016c;part=8/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	948882	949757	.	-	.	ID=id-Cj1016c-2;Note=HMMPfam hit to PF02653%2C Branched-chain amino acid transport syst%2C score 1.8e-32;gbkey=misc_feature;gene=livM;inference=protein motif:Pfam:PF02653;locus_tag=Cj1016c
gi|15791399|ref|NC_002163.1|	EMBL	gene	949844	950740	.	-	.	ID=gene-Cj1017c;Name=livH;gbkey=Gene;gene=livH;gene_biotype=protein_coding;locus_tag=Cj1017c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	949844	950740	.	-	0	ID=cds-CAL35135.1;Parent=gene-Cj1017c;Dbxref=EnsemblGenomes-Gn:Cj1017c,EnsemblGenomes-Tr:CAL35135,GOA:Q0P9N5,InterPro:IPR001851,UniProtKB/TrEMBL:Q0P9N5,NCBI_GP:CAL35135.1;Name=CAL35135.1;Note=Original (2000) note: Cj1017c%2C livH%2C probable branched-chain amino-acid ABC transport system permease protein%2C len: 298 aa%3B similar to e.g. LIVH_ECOLI high-affinity branched-chain amino acid transport permease protein (308 aa) fasta scores%3B opt: 538 z-score: 595.2 E(): 7.4e-26%2C 40.8%25 identity in 299 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02653 Branched-chain amino acid transport system / permease component identified within CDS. Also%2C seven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised in Escherichia coli with marginal identity score. Appropriate motifs present. Putative removed from product function. Functional classification - Transport/binding proteins -Amino acids and amines%3B~PMID:2120183%2C PMID:1429514%2C PMID:2195019;gbkey=CDS;gene=livH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1017c;product=branched-chain amino-acid ABC transport system permease protein;protein_id=CAL35135.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	949862	949930	.	-	.	ID=id-Cj1017c;Note=7 probable transmembrane helices predicted for Cj1017c by TMHMM2.0 at aa 15-37%2C 58-80%2C 95-117%2C 138-160%2C191-213%2C 234-256 and 271-293;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1017c;part=1/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	949973	950041	.	-	.	ID=id-Cj1017c;Note=7 probable transmembrane helices predicted for Cj1017c by TMHMM2.0 at aa 15-37%2C 58-80%2C 95-117%2C 138-160%2C191-213%2C 234-256 and 271-293;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1017c;part=2/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	950102	950170	.	-	.	ID=id-Cj1017c;Note=7 probable transmembrane helices predicted for Cj1017c by TMHMM2.0 at aa 15-37%2C 58-80%2C 95-117%2C 138-160%2C191-213%2C 234-256 and 271-293;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1017c;part=3/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	950261	950329	.	-	.	ID=id-Cj1017c;Note=7 probable transmembrane helices predicted for Cj1017c by TMHMM2.0 at aa 15-37%2C 58-80%2C 95-117%2C 138-160%2C191-213%2C 234-256 and 271-293;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1017c;part=4/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	950390	950458	.	-	.	ID=id-Cj1017c;Note=7 probable transmembrane helices predicted for Cj1017c by TMHMM2.0 at aa 15-37%2C 58-80%2C 95-117%2C 138-160%2C191-213%2C 234-256 and 271-293;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1017c;part=5/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	950501	950569	.	-	.	ID=id-Cj1017c;Note=7 probable transmembrane helices predicted for Cj1017c by TMHMM2.0 at aa 15-37%2C 58-80%2C 95-117%2C 138-160%2C191-213%2C 234-256 and 271-293;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1017c;part=6/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	950630	950698	.	-	.	ID=id-Cj1017c;Note=7 probable transmembrane helices predicted for Cj1017c by TMHMM2.0 at aa 15-37%2C 58-80%2C 95-117%2C 138-160%2C191-213%2C 234-256 and 271-293;gbkey=misc_feature;gene=livH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1017c;part=7/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	949898	950716	.	-	.	ID=id-Cj1017c-2;Note=HMMPfam hit to PF02653%2C Branched-chain amino acid transport syst%2C score 1e-38;gbkey=misc_feature;gene=livH;inference=protein motif:Pfam:PF02653;locus_tag=Cj1017c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	950513	950545	.	-	.	ID=id-Cj1017c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=livH;inference=protein motif:Prosite:PS00013;locus_tag=Cj1017c
gi|15791399|ref|NC_002163.1|	EMBL	gene	950759	951868	.	-	.	ID=gene-Cj1018c;Name=livK;gbkey=Gene;gene=livK;gene_biotype=protein_coding;locus_tag=Cj1018c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	950759	951868	.	-	0	ID=cds-CAL35136.1;Parent=gene-Cj1018c;Dbxref=EnsemblGenomes-Gn:Cj1018c,EnsemblGenomes-Tr:CAL35136,GOA:Q0P9N4,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:Q0P9N4,NCBI_GP:CAL35136.1;Name=CAL35136.1;Note=Original (2000) note: Cj1018c%2C livK%2C probable branched-chain amino-acid ABC transport system periplasmic binding protein%2C len: 369 aa%3B similar to e.g. LIVK_ECOLI LEU/ILE/VAL-binding protein precursor (367 aa)%2C fasta scores%3B opt: 386 z-score: 436.5 E(): 5.1e-17%2C 28.3%25 identity in 272 aa overlap. No Hp match. Highly similar to Cj1019c (62.0%25 identity in 371 aa overlap)%3B~Updated (2006) note: Pfam domain PF01094 Receptor family ligand binding region identified within CDS. Further support given to product function. Paper identified linking protein to glycoprotein (PMID:12186869). Characterised in Escherichia coli with marginal identity score. Appropriate motifs present. Putative removed from product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:2649683%2C PMID:2195019;gbkey=CDS;gene=livK;inference=protein motif:Pfam:PF01094;locus_tag=Cj1018c;product=branched-chain amino-acid ABC transport system%2Cperiplasmic binding protein;protein_id=CAL35136.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	950789	951769	.	-	.	ID=id-Cj1018c;Note=HMMPfam hit to PF01094%2C Receptor family ligand binding region%2C score 3.8e-49;gbkey=misc_feature;gene=livK;inference=protein motif:Pfam:PF01094;locus_tag=Cj1018c
gi|15791399|ref|NC_002163.1|	EMBL	gene	951890	953005	.	-	.	ID=gene-Cj1019c;Name=livJ;gbkey=Gene;gene=livJ;gene_biotype=protein_coding;locus_tag=Cj1019c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	951890	953005	.	-	0	ID=cds-CAL35137.1;Parent=gene-Cj1019c;Dbxref=EnsemblGenomes-Gn:Cj1019c,EnsemblGenomes-Tr:CAL35137,GOA:Q0P9N3,InterPro:IPR000709,InterPro:IPR028081,InterPro:IPR028082,UniProtKB/TrEMBL:Q0P9N3,NCBI_GP:CAL35137.1;Name=CAL35137.1;Note=Original (2000) note: Cj1019c%2C livJ%2C probable branched-chain amino-acid ABC transport system periplasmic binding protein%2C len: 369 aa%3B similar to e.g. LIVJ_ECOLI LEU/ILE/VAL-binding protein precursor (367 aa)%2C fasta scores%3B opt: 419 z-score: 465.8 E(): 1.2e-18%2C 27.8%25 identity in 352 aa overlap. No Hp match. Highly similar to Cj1018c (62.0%25 identity in 371 aa overlap)%3B~Updated (2006) note: Pfam domain PF01094 Receptor family ligand binding region identified within CDS. Further support given to producnt fucntion. Characterised in Escherichia coli with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Transport/binding proteins - Amino acids and amines%3B~PMID:15850393%2C PMID:2195019;gbkey=CDS;gene=livJ;inference=protein motif:Pfam:PF01094;locus_tag=Cj1019c;product=branched-chain amino-acid ABC transport system periplasmic binding protein;protein_id=CAL35137.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	951920	952888	.	-	.	ID=id-Cj1019c;Note=HMMPfam hit to PF01094%2C Receptor family ligand binding region%2C score 1.3e-52;gbkey=misc_feature;gene=livJ;inference=protein motif:Pfam:PF01094;locus_tag=Cj1019c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	952907	952924	.	-	.	ID=id-Cj1019c-2;Note=PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide;gbkey=misc_feature;gene=livJ;inference=protein motif:Prosite:PS00343;locus_tag=Cj1019c
gi|15791399|ref|NC_002163.1|	EMBL	gene	953036	953470	.	-	.	ID=gene-Cj1020c;Name=Cj1020c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1020c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	953036	953470	.	-	0	ID=cds-CAL35138.1;Parent=gene-Cj1020c;Dbxref=EnsemblGenomes-Gn:Cj1020c,EnsemblGenomes-Tr:CAL35138,GOA:Q0P9N2,InterPro:IPR009056,UniProtKB/TrEMBL:Q0P9N2,NCBI_GP:CAL35138.1;Name=CAL35138.1;Note=Original (2000) note: Cj1020c%2C probable cytochrome C%2C len: 144 aa%3B similar to e.g.C553_DESDN cytochrome C-553 (80 aa)%2C fasta scores%3B opt: 142 z-score: 184.4 E(): 0.0056%2C 30.8%25 identity in 78 aa overlap. Also similar to Cj1153 (27.6%25 identity in 76 aa overlap). No Hp ortholog. Contains N-terminal signal sequence%2C PS00190 Cytochrome c family heme-binding site signature%2C and Pfam match to entry PF00034 cytochrome_c%3B~Updated (2006) note: Putative kept in product function as no specific characterisation has been carried out. Functional classification - Energy metabolism -Electron transport;gbkey=CDS;inference=protein motif:Prosite:PS00190;locus_tag=Cj1020c;product=putative cytochrome C;protein_id=CAL35138.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	953117	953359	.	-	.	ID=id-Cj1020c;Note=HMMPfam hit to PF00034%2C Cytochrome c%2C score 0.0087;gbkey=misc_feature;inference=protein motif:Pfam:PF00034;locus_tag=Cj1020c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	953309	953326	.	-	.	ID=id-Cj1020c-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj1020c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	953390	953458	.	-	.	ID=id-Cj1020c-3;Note=1 probable transmembrane helix predicted for Cj1020c by TMHMM2.0 at aa 5-27;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1020c
gi|15791399|ref|NC_002163.1|	EMBL	gene	953479	953670	.	-	.	ID=gene-Cj1021c;Name=Cj1021c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1021c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	953479	953670	.	-	0	ID=cds-CAL35139.1;Parent=gene-Cj1021c;Dbxref=EnsemblGenomes-Gn:Cj1021c,EnsemblGenomes-Tr:CAL35139,InterPro:IPR008439,UniProtKB/TrEMBL:Q0P9N1,NCBI_GP:CAL35139.1;Name=CAL35139.1;Note=Original (2000) note: Cj1021c%2C probable periplasmic protein%2C len: 63 aa%3B similar to the N-terminus of C. jejuni major outer membrane protein TR:G2529699 (EMBL:U96452) (MOMP_CAMJE) momp%2C porA%2C Cj1259 (424 aa)%2Cfasta scores%3B opt: 110 z-score: 165.3 E(): 0.066%2C 36.4%25 identity in 55 aa overlap. No Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF05538 Campylobacter major outer membrane protein identified when running own Pfam search. Some characterisation work within Cj1259%2C however%2C alignment was only partial. Putative kept within product function. Psort was also ran with no additional results. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:10992471%2C PMID:754346%2C PMID:99163918;gbkey=CDS;inference=protein motif:Pfam:PF05538;locus_tag=Cj1021c;product=putative periplasmic protein;protein_id=CAL35139.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	953723	954229	.	-	.	ID=gene-Cj1022c;Name=Cj1022c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1022c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	953723	954229	.	-	0	ID=cds-CAL35140.1;Parent=gene-Cj1022c;Dbxref=EnsemblGenomes-Gn:Cj1022c,EnsemblGenomes-Tr:CAL35140,InterPro:IPR005134,UniProtKB/TrEMBL:Q0P9N0,NCBI_GP:CAL35140.1;Name=CAL35140.1;Note=Original (2000) note: Cj1022c%2C probable integral membrane protein%2C len: 168 aa%3B similar to e.g. TR:O66639 (EMBL:AE000682) Aquifex aeolicus AQ_286 (175 aa)%2C fasta scores%3B opt: 354 z-score: 451.1 E(): 7.9e-18%2C 34.3%25 identity in 166 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF07053 Protein of unknown function (DUF1334) identified within CDS. Also%2Cfour probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1022c;product=putative integral membrane protein;protein_id=CAL35140.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	953741	953794	.	-	.	ID=id-Cj1022c;Note=4 probable transmembrane helices predicted for Cj1022c by TMHMM2.0 at aa 13-35%2C 63-85%2C 119-136 and 146-163;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1022c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	953822	953875	.	-	.	ID=id-Cj1022c;Note=4 probable transmembrane helices predicted for Cj1022c by TMHMM2.0 at aa 13-35%2C 63-85%2C 119-136 and 146-163;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1022c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	953975	954043	.	-	.	ID=id-Cj1022c;Note=4 probable transmembrane helices predicted for Cj1022c by TMHMM2.0 at aa 13-35%2C 63-85%2C 119-136 and 146-163;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1022c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	954125	954193	.	-	.	ID=id-Cj1022c;Note=4 probable transmembrane helices predicted for Cj1022c by TMHMM2.0 at aa 13-35%2C 63-85%2C 119-136 and 146-163;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1022c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	953750	954202	.	-	.	ID=id-Cj1022c-2;Note=HMMPfam hit to PF07053%2C Protein of unknown function (DUF1334)%2C score 3e-81;gbkey=misc_feature;inference=protein motif:Pfam:PF07053;locus_tag=Cj1022c
gi|15791399|ref|NC_002163.1|	EMBL	gene	954238	955269	.	-	.	ID=gene-Cj1023c;Name=asd;gbkey=Gene;gene=asd;gene_biotype=protein_coding;locus_tag=Cj1023c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	954238	955269	.	-	0	ID=cds-CAL35141.1;Parent=gene-Cj1023c;Dbxref=EnsemblGenomes-Gn:Cj1023c,EnsemblGenomes-Tr:CAL35141,GOA:Q59291,InterPro:IPR000319,InterPro:IPR000534,InterPro:IPR005986,InterPro:IPR012080,InterPro:IPR012280,InterPro:IPR016040,NCBI_GP:CAL35141.1;Name=CAL35141.1;Note=Original (2000) note: Cj1023c%2C asd%2Caspartate-semialdehyde dehydrogenase%2C len: 343 aa%3B 88.3%25 identical to DHAS_CAMJE aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (343 aa)%2C and similar to e.g. DHAS_BACSU aspartate-semialdehyde dehydrogenase (346 aa)%2Cfasta scores%3B opt: 1001 z-score: 1136.7 E(): 0%2C 46.1%25 identity in 349 aa overlap. 51.6%25 identity to HP1189. Contains PS01103 Aspartate-semialdehyde dehydrogenase signature%2C and Pfam match to entry PF01118 Semialdhyde_dh%2CSemialdehyde dehydrogenase%3B~Updated (2006) note: Characterised in Campylobacter jejuni%2C so putative not added to product function. Functional classification - Amino acid biosynthesis -Aspartate family%3B~PMID:9127485%2C PMID:11274115;gbkey=CDS;gene=asd;inference=protein motif:Prosite:PS01103;locus_tag=Cj1023c;product=aspartate-semialdehyde dehydrogenase;protein_id=CAL35141.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	954298	954843	.	-	.	ID=id-Cj1023c;Note=HMMPfam hit to PF02774%2C Semialdehyde dehydrogenase%2Cdimerisat%2C score 6.2e-88;gbkey=misc_feature;gene=asd;inference=protein motif:Pfam:PF02774;locus_tag=Cj1023c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	954523	954567	.	-	.	ID=id-Cj1023c-2;Note=PS01103 Aspartate-semialdehyde dehydrogenase signature;gbkey=misc_feature;gene=asd;inference=protein motif:Prosite:PS01103;locus_tag=Cj1023c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	954880	955260	.	-	.	ID=id-Cj1023c-3;Note=HMMPfam hit to PF01118%2C Semialdehyde dehydrogenase%2CNAD bindi%2C score 5.8e-59;gbkey=misc_feature;gene=asd;inference=protein motif:Pfam:PF01118;locus_tag=Cj1023c
gi|15791399|ref|NC_002163.1|	EMBL	gene	955269	956570	.	-	.	ID=gene-Cj1024c;Name=flgR;gbkey=Gene;gene=flgR;gene_biotype=protein_coding;locus_tag=Cj1024c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	955269	956570	.	-	0	ID=cds-CAL35142.1;Parent=gene-Cj1024c;Dbxref=EnsemblGenomes-Gn:Cj1024c,EnsemblGenomes-Tr:CAL35142,GOA:Q0P9M8,InterPro:IPR001789,InterPro:IPR002078,InterPro:IPR003593,InterPro:IPR009057,InterPro:IPR011006,InterPro:IPR025662,InterPro:IPR025943,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9M8,NCBI_GP:CAL35142.1;Name=CAL35142.1;Note=Original (2000) note: Cj1024c%2C probable signal-transduction regulatory protein%2C len: 433 aa%3B similar to e.g. NTRC_PROVU nitrogen regulation protein NR(I) (473 aa)%2C fasta scores%3B opt: 957 z-score: 1002.5 E(): 0%2C 38.8%25 identity in 397 aa overlap%2C and ATOC_ECOLI acetoacetate metabolism regulatory protein (461 aa)%2C fasta scores%3B opt: 929 z-score: 973.5 E(): 0%2C 38.2%25 identity in 453 aa overlap. 57.1%25 identity to HP0703. Contains Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C PS00675 and PS00676 Sigma-54 interaction domain ATP-binding regions A and B signatures%2C and Pfam match to entry PF00158 sigma54%2C Sigma-54 transcription factors%3B~Updated (2006) note: Characterised within Campylobacter jejuni and Helicobacter pylori. Putative not added to product function. Literature search identified papers linking Cj0793 and Cj1024 to a two-component signal transduction system (FlgS/FlgR) that regulates the fla regulon in Campylobacter jejuni. Similar to that found in Helicobacter pylori. Functional classification - Signal transduction%3B~PMID:11292815%2C PMID:14617189%2C PMID:14960570;gbkey=CDS;gene=flgR;inference=protein motif:Prosite:PS00676;locus_tag=Cj1024c;product=sigma-54 associated transcriptional activator;protein_id=CAL35142.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	955500	956165	.	-	.	ID=id-Cj1024c;Note=HMMPfam hit to PF00158%2C Sigma-54 interaction domain%2C score 9.7e-136;gbkey=misc_feature;gene=flgR;inference=protein motif:Pfam:PF00158;locus_tag=Cj1024c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	955860	955907	.	-	.	ID=id-Cj1024c-2;Note=PS00676 Sigma-54 interaction domain ATP-binding region B signature;gbkey=misc_feature;gene=flgR;inference=protein motif:Prosite:PS00676;locus_tag=Cj1024c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	956052	956093	.	-	.	ID=id-Cj1024c-3;Note=PS00675 Sigma-54 interaction domain ATP-binding region A signature;gbkey=misc_feature;gene=flgR;inference=protein motif:Prosite:PS00675;locus_tag=Cj1024c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	956220	956570	.	-	.	ID=id-Cj1024c-4;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 9.1e-27;gbkey=misc_feature;gene=flgR;inference=protein motif:Pfam:PF00072;locus_tag=Cj1024c
gi|15791399|ref|NC_002163.1|	EMBL	gene	956627	957076	.	-	.	ID=gene-Cj1025c;Name=Cj1025c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1025c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	956627	957076	.	-	0	ID=cds-CAL35143.1;Parent=gene-Cj1025c;Dbxref=EnsemblGenomes-Gn:Cj1025c,EnsemblGenomes-Tr:CAL35143,UniProtKB/TrEMBL:Q0P9M7,NCBI_GP:CAL35143.1;Name=CAL35143.1;Note=Original (2000) note: Cj1025c%2C unknown%2C len: 149 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj1025c;product=hypothetical protein Cj1025c;protein_id=CAL35143.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	957052	957567	.	-	.	ID=gene-Cj1026c;Name=Cj1026c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1026c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	957052	957567	.	-	0	ID=cds-CAL35144.1;Parent=gene-Cj1026c;Dbxref=EnsemblGenomes-Gn:Cj1026c,EnsemblGenomes-Tr:CAL35144,InterPro:IPR007293,InterPro:IPR024952,UniProtKB/TrEMBL:Q0P9M6,NCBI_GP:CAL35144.1;Name=CAL35144.1;Note=Original (2000) note: Cj1026c%2C probable lipoprotein%2C len: 171 aa%3B 51.0%25 identity in N-terminus to HP0837 (102 aa). Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Pfam domain PF04164 Protein of unknown function%2C DUF400 identified within CDS. Literature search identified paper linking product to motility. Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:14985343;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1026c;product=putative lipoprotein;protein_id=CAL35144.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	957055	957351	.	-	.	ID=id-Cj1026c;Note=HMMPfam hit to PF04164%2C Protein of unknown function%2C DUF400%2C score 3.2e-61;gbkey=misc_feature;inference=protein motif:Pfam:PF04164;locus_tag=Cj1026c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	957517	957549	.	-	.	ID=id-Cj1026c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1026c
gi|15791399|ref|NC_002163.1|	EMBL	gene	957631	960222	.	-	.	ID=gene-Cj1027c;Name=gyrA;gbkey=Gene;gene=gyrA;gene_biotype=protein_coding;locus_tag=Cj1027c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	957631	960222	.	-	0	ID=cds-CAL35145.1;Parent=gene-Cj1027c;Dbxref=EnsemblGenomes-Gn:Cj1027c,EnsemblGenomes-Tr:CAL35145,GOA:Q03470,InterPro:IPR002205,InterPro:IPR005743,InterPro:IPR006691,InterPro:IPR013758,InterPro:IPR013760,InterPro:IPR024946,NCBI_GP:CAL35145.1;Name=CAL35145.1;Note=Original (2000) note: Cj1027c%2C gyrA%2C DNA gyrase subunit A%2C len: 863 aa%3B identical to GYRA_CAMJE%2C and similar to e.g. GYRA_BACSU DNA gyrase subunit A (EC 5.99.1.3) (821 aa)%2C fasta scores%3B opt: 2365 z-score: 2566.2 E(): 0%2C 49.4%25 identity in 849 aa overlap. 61.9%25 identity to HP0701. Contains Pfam match to entry PF00521 DNA_topoisoIV%2C DNA gyrase/topoisomerase IV%2C subunit A%3B~Updated (2006) note: Characterised in Campylobacter jejuni and Escherichia coli%2C so putative not added to product function. Functional classification - DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:8384814;gbkey=CDS;gene=gyrA;inference=protein motif:Pfam:PF00521;locus_tag=Cj1027c;product=DNA gyrase subunit A;protein_id=CAL35145.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	957688	957834	.	-	.	ID=id-Cj1027c;Note=HMMPfam hit to PF03989%2C DNA gyrase C-terminal domain%2C beta-prop%2C score 9.4e-11;gbkey=misc_feature;gene=gyrA;inference=protein motif:Pfam:PF03989;locus_tag=Cj1027c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	957835	957987	.	-	.	ID=id-Cj1027c-2;Note=HMMPfam hit to PF03989%2C DNA gyrase C-terminal domain%2C beta-prop%2C score 1.4e-15;gbkey=misc_feature;gene=gyrA;inference=protein motif:Pfam:PF03989;locus_tag=Cj1027c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	957991	958143	.	-	.	ID=id-Cj1027c-3;Note=HMMPfam hit to PF03989%2C DNA gyrase C-terminal domain%2C beta-prop%2C score 2.1e-15;gbkey=misc_feature;gene=gyrA;inference=protein motif:Pfam:PF03989;locus_tag=Cj1027c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	958252	958395	.	-	.	ID=id-Cj1027c-4;Note=HMMPfam hit to PF03989%2C DNA gyrase C-terminal domain%2C beta-prop%2C score 2.4e-14;gbkey=misc_feature;gene=gyrA;inference=protein motif:Pfam:PF03989;locus_tag=Cj1027c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	958405	958563	.	-	.	ID=id-Cj1027c-5;Note=HMMPfam hit to PF03989%2C DNA gyrase C-terminal domain%2C beta-prop%2C score 5.4e-15;gbkey=misc_feature;gene=gyrA;inference=protein motif:Pfam:PF03989;locus_tag=Cj1027c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	958564	958713	.	-	.	ID=id-Cj1027c-6;Note=HMMPfam hit to PF03989%2C DNA gyrase C-terminal domain%2C beta-prop%2C score 4.8e-14;gbkey=misc_feature;gene=gyrA;inference=protein motif:Pfam:PF03989;locus_tag=Cj1027c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	958780	960120	.	-	.	ID=id-Cj1027c-7;Note=HMMPfam hit to PF00521%2C DNA gyrase/topoisomerase IV%2C subunit A%2C score 0;gbkey=misc_feature;gene=gyrA;inference=protein motif:Pfam:PF00521;locus_tag=Cj1027c
gi|15791399|ref|NC_002163.1|	EMBL	gene	960263	960838	.	-	.	ID=gene-Cj1028c;Name=Cj1028c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1028c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	960263	960838	.	-	0	ID=cds-CAL35146.1;Parent=gene-Cj1028c;Dbxref=EnsemblGenomes-Gn:Cj1028c,EnsemblGenomes-Tr:CAL35146,GOA:Q0P9M4,InterPro:IPR029057,UniProtKB/TrEMBL:Q0P9M4,NCBI_GP:CAL35146.1;Name=CAL35146.1;Note=Original (2000) note: Cj1028c%2C possible purine/pyrimidine phosphoribosyltransferase%2C len: 191 aa%3B weak similarity to e.g. orotate phosphoribosyltransferase domain of PYR5_HUMAN uridine 5'-monophosphate synthase (480 aa)%2C fasta scores%3B opt: 114 z-score: 145.4 E(): 0.85%2C25.5%25 identity in 149 aa overlap. 37.3%25 identity to HP1473. Contains PS00103 Purine/pyrimidine phosphoribosyl transferases signature%3B~Updated (2006) note: Pfam domain PF00156 Phosphoribosyl transferase domain identified within CDS. Further support given to product function. Product kept the same as no specific characterisation has been carried out. Possible was changed to putative. Literature search identified two papers giving further clues to product function. Functional classification - Miscellaneous nucleoside/nucleotide reactions%3B~PMID:16048946%2C PMID:12949093;gbkey=CDS;inference=protein motif:Prosite:PS00103;locus_tag=Cj1028c;product=putative purine/pyrimidine phosphoribosyltransferase;protein_id=CAL35146.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	960344	960382	.	-	.	ID=id-Cj1028c;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00103;locus_tag=Cj1028c
gi|15791399|ref|NC_002163.1|	EMBL	gene	960835	961479	.	-	.	ID=gene-Cj1029c;Name=mapA;gbkey=Gene;gene=mapA;gene_biotype=protein_coding;locus_tag=Cj1029c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	960835	961479	.	-	0	ID=cds-CAL35147.1;Parent=gene-Cj1029c;Dbxref=EnsemblGenomes-Gn:Cj1029c,EnsemblGenomes-Tr:CAL35147,GOA:P0C633,NCBI_GP:CAL35147.1;Name=CAL35147.1;Note=Original (2000) note: Cj1029c%2C mapA%2C probable lipoprotein%2C len: 214 aa%3B identical to TR:Q46122 (EMBL:X80135) C. jeuni species specific mapA gene (214 aa). No Hp match. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Studied in Campylobacter jejuni. No specific characterisation has been carried out yet. Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:7790451;gbkey=CDS;gene=mapA;inference=protein motif:Prosite:PS00013;locus_tag=Cj1029c;product=putative liproprotein;protein_id=CAL35147.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	961426	961458	.	-	.	ID=id-Cj1029c;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=mapA;inference=protein motif:Prosite:PS00013;locus_tag=Cj1029c
gi|15791399|ref|NC_002163.1|	EMBL	gene	961556	963352	.	-	.	ID=gene-Cj1030c;Name=lepA;gbkey=Gene;gene=lepA;gene_biotype=protein_coding;locus_tag=Cj1030c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	961556	963352	.	-	0	ID=cds-CAL35148.1;Parent=gene-Cj1030c;Dbxref=EnsemblGenomes-Gn:Cj1030c,EnsemblGenomes-Tr:CAL35148,GOA:Q9PNR1,InterPro:IPR000640,InterPro:IPR000795,InterPro:IPR004161,InterPro:IPR005225,InterPro:IPR006297,InterPro:IPR009000,InterPro:IPR009022,InterPro:IPR013842,InterPro:IPR027417,NCBI_GP:CAL35148.1;Name=CAL35148.1;Note=Original (2000) note: Cj1030c%2C lepA%2C probable GTP-binding protein%2C len: 598 aa%3B similar to many e.g. LEPA_ECOLI GTP-binding protein LEPA (599 aa)%2C fasta scores%3B opt: 2327 z-score: 2553.7 E(): 0%2C 58.4%25 identity in 596 aa overlap. 74.7%25 identity to HP0355. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00301 GTP-binding elongation factors signature%2C and Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%3B~Updated (2006) note: Pfam domains PF06421 GTP-binding protein LepA C-terminus%2C PF00679 Elongation factor G C-terminus and PF03144 Elongation factor Tu domain were all found in CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score. Homolog kept within product function. Functional classification - Misc%3B~PMID:2987248;gbkey=CDS;gene=lepA;inference=protein motif:Prosite:PS00301;locus_tag=Cj1030c;product=GTP-binding protein;protein_id=CAL35148.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	961559	961885	.	-	.	ID=id-Cj1030c;Note=HMMPfam hit to PF06421%2C GTP-binding protein LepA C-terminus%2C score 1.2e-74;gbkey=misc_feature;gene=lepA;inference=protein motif:Pfam:PF06421;locus_tag=Cj1030c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	961886	962155	.	-	.	ID=id-Cj1030c-2;Note=HMMPfam hit to PF00679%2C Elongation factor G C-terminus%2C score 3.7e-39;gbkey=misc_feature;gene=lepA;inference=protein motif:Pfam:PF00679;locus_tag=Cj1030c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	962522	962737	.	-	.	ID=id-Cj1030c-3;Note=HMMPfam hit to PF03144%2C Elongation factor Tu domain%2C score 1.2e-10;gbkey=misc_feature;gene=lepA;inference=protein motif:Pfam:PF03144;locus_tag=Cj1030c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	962798	963343	.	-	.	ID=id-Cj1030c-4;Note=HMMPfam hit to PF00009%2C Elongation factor Tu GTP binding domain%2C score 5.1e-73;gbkey=misc_feature;gene=lepA;inference=protein motif:Pfam:PF00009;locus_tag=Cj1030c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	963176	963223	.	-	.	ID=id-Cj1030c-5;Note=PS00301 GTP-binding elongation factors signature;gbkey=misc_feature;gene=lepA;inference=protein motif:Prosite:PS00301;locus_tag=Cj1030c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	963293	963316	.	-	.	ID=id-Cj1030c-6;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=lepA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1030c
gi|15791399|ref|NC_002163.1|	EMBL	gene	963479	964753	.	+	.	ID=gene-Cj1031;Name=cmeD;gbkey=Gene;gene=cmeD;gene_biotype=protein_coding;locus_tag=Cj1031
gi|15791399|ref|NC_002163.1|	EMBL	CDS	963479	964753	.	+	0	ID=cds-CAL35149.1;Parent=gene-Cj1031;Dbxref=EnsemblGenomes-Gn:Cj1031,EnsemblGenomes-Tr:CAL35149,GOA:Q0P9M1,InterPro:IPR003423,UniProtKB/TrEMBL:Q0P9M1,NCBI_GP:CAL35149.1;Name=CAL35149.1;Note=Original (2000) note: Cj1031%2C possible outer membrane component of efflux system%2C len: 424 aa%3B similar to members of the PRTF family of secretion proteins e.g. TR:O68960 (EMBL:AF059041) putative outer membrane pore protein hefA (%3DHP0605) (477 aa)%2C fasta scores%3B opt: 238 z-score: 261.5 E(): 2.9e-07%2C 25.2%25 identity in 409 aa overlap%2C and TOLC_SALEN outer membrane protein TOLC precursor (491 aa)%2C fasta scores%3B opt: 174 z-score: 192.9 E(): 0.0019%2C 21.5%25 identity in 437 aa overlap. 24.8%25 identity to HP0605. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domains x2 PF02321 Outer membrane efflux protein were identified within CDS. Further support given to product function. Characterised in Campylobacter jejuni%2C so putative removed from product function. Functional classification - Antibiotic resistance%3B~PMID:16048946%2C PMID:15793099%2C PMID:12069964%2CPMID:15201231%2C PMID:16303882;gbkey=CDS;gene=cmeD;inference=protein motif:Pfam:PF02321;locus_tag=Cj1031;product=outer membrane component of efflux system (multidrug efflux system CmeDEF);protein_id=CAL35149.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	963548	964096	.	+	.	ID=id-Cj1031;Note=HMMPfam hit to PF02321%2C Outer membrane efflux protein%2C score 3.8e-05;gbkey=misc_feature;gene=cmeD;inference=protein motif:Pfam:PF02321;locus_tag=Cj1031
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	964139	964723	.	+	.	ID=id-Cj1031-2;Note=HMMPfam hit to PF02321%2C Outer membrane efflux protein%2C score 1.3e-11;gbkey=misc_feature;gene=cmeD;inference=protein motif:Pfam:PF02321;locus_tag=Cj1031
gi|15791399|ref|NC_002163.1|	EMBL	gene	964750	965490	.	+	.	ID=gene-Cj1032;Name=cmeE;gbkey=Gene;gene=cmeE;gene_biotype=protein_coding;locus_tag=Cj1032
gi|15791399|ref|NC_002163.1|	EMBL	CDS	964750	965490	.	+	0	ID=cds-CAL35150.1;Parent=gene-Cj1032;Dbxref=EnsemblGenomes-Gn:Cj1032,EnsemblGenomes-Tr:CAL35150,GOA:Q0P9M0,InterPro:IPR006143,UniProtKB/TrEMBL:Q0P9M0,NCBI_GP:CAL35150.1;Name=CAL35150.1;Note=Original (2000) note: Cj1032%2C possible membrane fusion component of efflux system%2C len: 246 aa%3B similar to e.g. TR:O68961 EMBL:AF059041) H. pylori putative membrane fusion protein hefB (%3DHP0606) (241 aa)%2C fasta scores%3B opt: 318 z-score: 369.4 E(): 2.8e-13%2C 35.5%25 identity in 248 aa overlap%2C and part of CZCB_ALCSP cation efflux system protein CZCB (520 aa)%2C fasta scores%3B opt: 224 z-score: 258.9 E(): 4e-07%2C 28.6%25 identity in 213 aa overlap. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain identified by running own Pfam search%2C PF00529 HlyD family secretion protein. Further support given to product function. Characterised in Campylobacter jejuni%2C so putative removed from product function. Functional classification -Antibiotic resistance%3B~PMID:16048946%2C PMID:15793099%2C PMID:12069964%2CPMID:15201231%2C PMID:16303882;gbkey=CDS;gene=cmeE;inference=protein motif:Pfam:PF00529;locus_tag=Cj1032;product=membrane fusion component of efflux system (mutlidrug efflux system CmeDEF);protein_id=CAL35150.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	965493	968510	.	+	.	ID=gene-Cj1033;Name=cmeF;gbkey=Gene;gene=cmeF;gene_biotype=protein_coding;locus_tag=Cj1033
gi|15791399|ref|NC_002163.1|	EMBL	CDS	965493	968510	.	+	0	ID=cds-CAL35151.1;Parent=gene-Cj1033;Dbxref=EnsemblGenomes-Gn:Cj1033,EnsemblGenomes-Tr:CAL35151,GOA:Q0P9L9,InterPro:IPR001036,InterPro:IPR027463,UniProtKB/TrEMBL:Q0P9L9,NCBI_GP:CAL35151.1;Name=CAL35151.1;Note=Original (2000) note: Cj1033%2C probable integral membrane component of efflux system%2C len: 1005 aa%3B similar to members of the ACRB/ACRD/ACRF family e.g. TR:O68962 (EMBL:AF059041) H. pylori putative RND pump protein hefC (%3DHP0607) (1026 aa)%2C fasta scores%3B opt: 1372 z-score: 1439.0 E(): 0%2C 36.9%25 identity in 1027 aa overlap%2C and ACRD_ECOLI acriflavin resistance protein D (1037 aa)%2Cfasta scores%3B opt: 571 z-score: 598.0 E(): 5.2e-26%2C 25.7%25 identity in 1033 aa overlap. 37.1%25 identity to HP0607. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2Cand Pfam match to entry PF00873 ACR_tran%2C AcrB/AcrD/AcrF family%3B~Updated (2006) note: Twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised in Campylobacter jejuni%2Cso putative removed from product function. Functional classification - Antibiotic resistance%3B~PMID:16048946%2C PMID:15793099%2C PMID:12069964%2CPMID:15201231%2C PMID:16303882;gbkey=CDS;gene=cmeF;inference=protein motif:TMHMM:2.0;locus_tag=Cj1033;product=integral membrane component of efflux system (multidrug efflux system CmeDEF);protein_id=CAL35151.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	965493	968459	.	+	.	ID=id-Cj1033;Note=HMMPfam hit to PF00873%2C AcrB/AcrD/AcrF family%2Cscore 5.6e-198;gbkey=misc_feature;gene=cmeF;inference=protein motif:Pfam:PF00873;locus_tag=Cj1033
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	965526	965594	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=1/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	966447	966506	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=2/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	966525	966593	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=3/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	966606	966674	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=4/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	966735	966803	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=5/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	966846	966914	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=6/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	967014	967082	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=7/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	967977	968045	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=8/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	968058	968126	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=9/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	968139	968207	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=10/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	968283	968351	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=11/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	968379	968447	.	+	.	ID=id-Cj1033-2;Note=12 probable transmembrane helices predicted for Cj1033 by TMHMM2.0 at aa 12-34%2C 319-338%2C 345-367%2C 372-394%2C415-437%2C 452-474%2C 508-530%2C 829-851%2C 856-878%2C 883-905%2C931-953 and 963-985;gbkey=misc_feature;gene=cmeF;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1033;part=12/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	968256	968279	.	+	.	ID=id-Cj1033-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=cmeF;inference=protein motif:Prosite:PS00017;locus_tag=Cj1033
gi|15791399|ref|NC_002163.1|	EMBL	gene	968534	969340	.	-	.	ID=gene-Cj1034c;Name=Cj1034c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1034c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	968534	969340	.	-	0	ID=cds-CAL35152.1;Parent=gene-Cj1034c;Dbxref=EnsemblGenomes-Gn:Cj1034c,EnsemblGenomes-Tr:CAL35152,InterPro:IPR001623,UniProtKB/TrEMBL:Q0P9L8,NCBI_GP:CAL35152.1;Name=CAL35152.1;Note=Original (2000) note: Cj1034c%2C possible dnaJ-like protein%2C len: 268 aa%3B no Hp match. Some similarity to dnaJ-like protein Cj0954c (23.2%25 identity in 254 aa overlap). Contains weak Pfam match to entry PF00226 DnaJ%2CDnaJ domain%3B~Updated (2006) note: Prosite domain PS50076 DNAJ_2%2CHeat shock protein DnaJ%2C N-terminal identified within CDS. No specific characterisation has been carried out yet%2C so putative kept in product function. Functional classification - Chaperones%2C chaperonins%2C heat shock;gbkey=CDS;inference=protein motif:Prosite:PS50076;locus_tag=Cj1034c;product=putative DnaJ-like protein;protein_id=CAL35152.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	968537	968734	.	-	.	ID=id-Cj1034c;Note=HMMPfam hit to PF00226%2C DnaJ domain%2C score 1.5e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF00226;locus_tag=Cj1034c
gi|15791399|ref|NC_002163.1|	EMBL	gene	969341	970060	.	-	.	ID=gene-Cj1035c;Name=ate;gbkey=Gene;gene=ate;gene_biotype=protein_coding;locus_tag=Cj1035c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	969341	970060	.	-	0	ID=cds-CAL35153.1;Parent=gene-Cj1035c;Dbxref=EnsemblGenomes-Gn:Cj1035c,EnsemblGenomes-Tr:CAL35153,GOA:Q9PNQ6,InterPro:IPR007471,InterPro:IPR007472,InterPro:IPR016181,InterPro:IPR017138,NCBI_GP:CAL35153.1;Name=CAL35153.1;Note=Original (2000) note: Cj1035c%2C possible transferase%2C len: 239 aa%3B similar to the N-terminus of eukarotic arginyl-tRNA--protein transferases e.g. ATE1_YEAST arginyl-tRNA--protein transferase (503 aa)%2Cfasta scores%3B opt: 263 z-score: 316.1 E(): 2.6e-10%2C 30.1%25 identity in 219 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF04377 Arginine-tRNA-protein transferase%2C C terminus and PF04376 Arginine-tRNA-protein transferase%2C N terminus were identified within CDS. Product function modified to more specific family member based on motif matches. Specific characterisation has not been carried out with acceptable identity score%2C so putative kept within product function. Functional classification - Aminoacyl tRNA synthetases and their modification;gbkey=CDS;gene=ate;inference=protein motif:Pfam:PF04377;locus_tag=Cj1035c;product=putative arginyl-tRNA-protein transferase;protein_id=CAL35153.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	969362	969781	.	-	.	ID=id-Cj1035c;Note=HMMPfam hit to PF04377%2C Arginine-tRNA-protein transferase%2C C terminu%2C score 7.3e-72;gbkey=misc_feature;gene=ate;inference=protein motif:Pfam:PF04377;locus_tag=Cj1035c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	969797	970060	.	-	.	ID=id-Cj1035c-2;Note=HMMPfam hit to PF04376%2C Arginine-tRNA-protein transferase%2C N terminu%2C score 1.9e-42;gbkey=misc_feature;gene=ate;inference=protein motif:Pfam:PF04376;locus_tag=Cj1035c
gi|15791399|ref|NC_002163.1|	EMBL	gene	970060	970311	.	-	.	ID=gene-Cj1036c;Name=Cj1036c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1036c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	970060	970311	.	-	0	ID=cds-CAL35154.1;Parent=gene-Cj1036c;Dbxref=EnsemblGenomes-Gn:Cj1036c,EnsemblGenomes-Tr:CAL35154,UniProtKB/TrEMBL:Q0P9L6,NCBI_GP:CAL35154.1;Name=CAL35154.1;Note=Original (2000) note: Cj1036c%2C possible transcriptional regulator%2C len: 83 aa%3B no Hp match. Contains probable helix-turn-helix motif at aa 19-40 (Score 1070%2C +2.83 SD)%3B~Updated (2006) note: Conserved added to product function. Functional classification - Broad regulatory functions;gbkey=CDS;locus_tag=Cj1036c;product=conserved hypothetical protein Cj1036c;protein_id=CAL35154.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	970315	971760	.	-	.	ID=gene-Cj1037c;Name=pycA;gbkey=Gene;gene=pycA;gene_biotype=protein_coding;locus_tag=Cj1037c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	970315	971760	.	-	0	ID=cds-CAL35155.1;Parent=gene-Cj1037c;Dbxref=EnsemblGenomes-Gn:Cj1037c,EnsemblGenomes-Tr:CAL35155,GOA:Q0P9L5,InterPro:IPR004549,InterPro:IPR005479,InterPro:IPR005481,InterPro:IPR005482,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR011764,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,UniProtKB/TrEMBL:Q0P9L5,NCBI_GP:CAL35155.1;Name=CAL35155.1;Note=Original (2000) note: Cj1037c%2C pycA%2C possible pyruvate carboxylase A subunit%2C len: 481 aa%3B similar to TR:O27939 (EMBL:AE000942) Methanobacterium thermoautotrophicum characterised pyruvate carboxylase A (EC 6.4.1.1) (491 aa)%2C fasta scores%3B opt: 1569 z-score: 1762.8 E(): 0%2C 50.4%25 identity in 490 aa overlap. Also similar to many acetyl-CoA carboxylase A subunits e.g. ACCC_ECOLI biotin carboxylase (A subunit of acetyl-CoA carboxylase ) (449 aa)%2C fasta scores%3B opt: 1468 z-score: 1650.1 E(): 0%2C 49.9%25 identity in 451 aa overlap. No Hp ortholog. Also similar to accC Cj1290c (46.5%25 identity in 445 aa overlap)%3B~Updated (2006) note: Pfam domains PF02785 Biotin carboxylase C-terminal domain%2C PF02786 Carbamoyl-phosphate synthase L chain and PF00289 Carbamoyl-phosphate synthase L chain were all identified within CDS. Further support given to product function. Characterised within Campylobacter jejuni%2C putative removed from product function. Functional classification - Central intermediary metabolism - Gluconeogenesis%3B~PMID:9478969%2C PMID:11882702;gbkey=CDS;gene=pycA;inference=protein motif:Pfam:PF02786;locus_tag=Cj1037c;product=pyruvate carboxylase A subunit;protein_id=CAL35155.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	970429	970749	.	-	.	ID=id-Cj1037c;Note=HMMPfam hit to PF02785%2C Biotin carboxylase C-terminal domain%2C score 7.6e-49;gbkey=misc_feature;gene=pycA;inference=protein motif:Pfam:PF02785;locus_tag=Cj1037c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	970768	971415	.	-	.	ID=id-Cj1037c-2;Note=HMMPfam hit to PF02786%2C Carbamoyl-phosphate synthase L chain%2C%2C score 2.9e-98;gbkey=misc_feature;gene=pycA;inference=protein motif:Pfam:PF02786;locus_tag=Cj1037c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	970876	970899	.	-	.	ID=id-Cj1037c-3;Note=PS00867 Carbamoyl-phosphate synthase subdomain signature 2;gbkey=misc_feature;gene=pycA;inference=protein motif:Prosite:PS00867;locus_tag=Cj1037c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	971254	971298	.	-	.	ID=id-Cj1037c-4;Note=PS00866 Carbamoyl-phosphate synthase subdomain signature 1;gbkey=misc_feature;gene=pycA;inference=protein motif:Prosite:PS00866;locus_tag=Cj1037c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	971419	971754	.	-	.	ID=id-Cj1037c-5;Note=HMMPfam hit to PF00289%2C Carbamoyl-phosphate synthase L chain%2C%2C score 1.3e-42;gbkey=misc_feature;gene=pycA;inference=protein motif:Pfam:PF00289;locus_tag=Cj1037c
gi|15791399|ref|NC_002163.1|	EMBL	gene	971900	973063	.	+	.	ID=gene-Cj1038;Name=Cj1038;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1038
gi|15791399|ref|NC_002163.1|	EMBL	CDS	971900	973063	.	+	0	ID=cds-CAL35156.1;Parent=gene-Cj1038;Dbxref=EnsemblGenomes-Gn:Cj1038,EnsemblGenomes-Tr:CAL35156,GOA:Q0P9L4,InterPro:IPR001182,InterPro:IPR013437,UniProtKB/TrEMBL:Q0P9L4,NCBI_GP:CAL35156.1;Name=CAL35156.1;Note=Original (2000) note: Cj1038%2C probable cell division/peptidoglycan biosynthesis protein%2C len: 387 aa%3B similar to members of the FTSW/RODA/SPOVE family e.g. RODA_ECOLi rod shape-determining protein RODA (370 aa)%2Cfasta scores%3B opt: 297 z-score: 358.2 E(): 1.2e-12%2C 27.1%25 identity in 388 aa overlap%2C and FTSW_ECOLI cell division protein FTSW (414 aa)%2C fasta scores%3B opt: 288 z-score: 346.8 E(): 5.1e-12%2C 28.4%25 identity in 394 aa overlap. 46.4%25 identity to HP1560. Contains Pfam match to entry PF01098 FTSW_RODA_SPOVE%2C Cell cycle protein%3B~Updated (2006) note: Ten probable transmembrane helices predicted by TMHMM2.0. Specific characterisation not yet carried out%2C so putative kept in product function. Functional classification - Cell division;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1038;product=putative cell division/peptidoglycan biosynthesis protein;protein_id=CAL35156.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	971912	973060	.	+	.	ID=id-Cj1038;Note=HMMPfam hit to PF01098%2C Cell cycle protein%2C score 6e-78;gbkey=misc_feature;inference=protein motif:Pfam:PF01098;locus_tag=Cj1038
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	971918	971986	.	+	.	ID=id-Cj1038-2;Note=10 probable transmembrane helices predicted for Cj1038 by TMHMM2.0 at aa 7-29%2C 39-58%2C 71-93%2C 103-125%2C145-164%2C 168-186%2C 191-208%2C 294-314%2C 326-348 and 358-380;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1038;part=1/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	972014	972073	.	+	.	ID=id-Cj1038-2;Note=10 probable transmembrane helices predicted for Cj1038 by TMHMM2.0 at aa 7-29%2C 39-58%2C 71-93%2C 103-125%2C145-164%2C 168-186%2C 191-208%2C 294-314%2C 326-348 and 358-380;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1038;part=2/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	972110	972178	.	+	.	ID=id-Cj1038-2;Note=10 probable transmembrane helices predicted for Cj1038 by TMHMM2.0 at aa 7-29%2C 39-58%2C 71-93%2C 103-125%2C145-164%2C 168-186%2C 191-208%2C 294-314%2C 326-348 and 358-380;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1038;part=3/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	972206	972274	.	+	.	ID=id-Cj1038-2;Note=10 probable transmembrane helices predicted for Cj1038 by TMHMM2.0 at aa 7-29%2C 39-58%2C 71-93%2C 103-125%2C145-164%2C 168-186%2C 191-208%2C 294-314%2C 326-348 and 358-380;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1038;part=4/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	972332	972391	.	+	.	ID=id-Cj1038-2;Note=10 probable transmembrane helices predicted for Cj1038 by TMHMM2.0 at aa 7-29%2C 39-58%2C 71-93%2C 103-125%2C145-164%2C 168-186%2C 191-208%2C 294-314%2C 326-348 and 358-380;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1038;part=5/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	972401	972457	.	+	.	ID=id-Cj1038-2;Note=10 probable transmembrane helices predicted for Cj1038 by TMHMM2.0 at aa 7-29%2C 39-58%2C 71-93%2C 103-125%2C145-164%2C 168-186%2C 191-208%2C 294-314%2C 326-348 and 358-380;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1038;part=6/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	972470	972523	.	+	.	ID=id-Cj1038-2;Note=10 probable transmembrane helices predicted for Cj1038 by TMHMM2.0 at aa 7-29%2C 39-58%2C 71-93%2C 103-125%2C145-164%2C 168-186%2C 191-208%2C 294-314%2C 326-348 and 358-380;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1038;part=7/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	972779	972841	.	+	.	ID=id-Cj1038-2;Note=10 probable transmembrane helices predicted for Cj1038 by TMHMM2.0 at aa 7-29%2C 39-58%2C 71-93%2C 103-125%2C145-164%2C 168-186%2C 191-208%2C 294-314%2C 326-348 and 358-380;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1038;part=8/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	972875	972943	.	+	.	ID=id-Cj1038-2;Note=10 probable transmembrane helices predicted for Cj1038 by TMHMM2.0 at aa 7-29%2C 39-58%2C 71-93%2C 103-125%2C145-164%2C 168-186%2C 191-208%2C 294-314%2C 326-348 and 358-380;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1038;part=9/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	972971	973039	.	+	.	ID=id-Cj1038-2;Note=10 probable transmembrane helices predicted for Cj1038 by TMHMM2.0 at aa 7-29%2C 39-58%2C 71-93%2C 103-125%2C145-164%2C 168-186%2C 191-208%2C 294-314%2C 326-348 and 358-380;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1038;part=10/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	973060	974088	.	+	.	ID=gene-Cj1039;Name=murG;gbkey=Gene;gene=murG;gene_biotype=protein_coding;locus_tag=Cj1039
gi|15791399|ref|NC_002163.1|	EMBL	CDS	973060	974088	.	+	0	ID=cds-CAL35157.1;Parent=gene-Cj1039;Dbxref=EnsemblGenomes-Gn:Cj1039,EnsemblGenomes-Tr:CAL35157,GOA:Q9PNQ2,InterPro:IPR004276,InterPro:IPR006009,InterPro:IPR007235,NCBI_GP:CAL35157.1;Name=CAL35157.1;Note=EC number 2.4.1.277%3B~Original (2000) note: Cj1039%2C murG%2C possible UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase%2C len: 342 aa%3B simialr to many e.g. MURG_BACSU UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (EC 2.4.1.-) (363 aa)%2C fasta scores%3B opt: 274 z-score: 321.1 E(): 1.4e-10%2C 25.7%25 identity in 358 aa overlap. 48.7%25 identity to HP1155%3B~Updated (2006) note: Pfam domains PF03033 %26 PF04101 Glycosyltransferase family identified within CDS. Further support given to product function. Characterisation has been carried out in Escherichia coli%2C however%2C identity score was unacceptable. Thus%2C putative kept in product function. Product function updated due to EC revision. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:10892798%2C PMID:1649817;gbkey=CDS;gene=murG;inference=protein motif:Pfam:PF04101;locus_tag=Cj1039;product=putative undecaprenyldiphospho-muramoylpentapeptide b-N-acetylglucosaminyltransferase;protein_id=CAL35157.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	973066	973488	.	+	.	ID=id-Cj1039;Note=HMMPfam hit to PF03033%2C Glycosyltransferase family%2Cscore 1.4e-14;gbkey=misc_feature;gene=murG;inference=protein motif:Pfam:PF03033;locus_tag=Cj1039
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	973567	974058	.	+	.	ID=id-Cj1039-2;Note=HMMPfam hit to PF04101%2C Glycosyltransferase family%2Cscore 1.2e-40;gbkey=misc_feature;gene=murG;inference=protein motif:Pfam:PF04101;locus_tag=Cj1039
gi|15791399|ref|NC_002163.1|	EMBL	gene	974059	975222	.	-	.	ID=gene-Cj1040c;Name=Cj1040c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1040c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	974059	975222	.	-	0	ID=cds-CAL35158.1;Parent=gene-Cj1040c;Dbxref=EnsemblGenomes-Gn:Cj1040c,EnsemblGenomes-Tr:CAL35158,GOA:Q0P9L2,InterPro:IPR011701,InterPro:IPR016196,UniProtKB/TrEMBL:Q0P9L2,NCBI_GP:CAL35158.1;Name=CAL35158.1;Note=Original (2000) note: Cj1040c%2C probable transmembrane transport protein%2C len: 387 aa%3B simlar to hypothetical membrane proteins e.g. YEAN_ECOLI (393 aa)%2Cfasta scores%3B opt: 641 z-score: 726.5 E(): 0%2C 31.2%25 identity in 381 aa overlap%2C and to CYNX_ECOLI cyanate transport protein CYNX (384 aa)%2C fasta scores%3B opt: 421 z-score: 480.1 E(): 1.9e-19%2C 23.9%25 identity in 368 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily (MFS) protein identified within CDS. Also%2C Twelve probable transmembrane helices predicted by TMHMM2.0. Specific characterisation has not been carried out yet%2C so putative kept in product function. Functional classification - Transport/binding proteins -Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;product=putative MFS (Major Facilitator Superfamily) transport protein;protein_id=CAL35158.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974080	974148	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974176	974235	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974272	974340	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974356	974424	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974443	974511	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974539	974607	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974686	974754	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974764	974832	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974869	974937	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974947	975006	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	975025	975093	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	975136	975204	.	-	.	ID=id-Cj1040c;Note=12 probable transmembrane helices predicted for Cj1040c by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-92%2C 96-118%2C131-153%2C 157-179%2C 206-228%2C 238-260%2C 267-289%2C 295-317%2C330-349 and 359-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1040c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974161	975180	.	-	.	ID=id-Cj1040c-2;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 4.2e-14;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj1040c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	974908	974940	.	-	.	ID=id-Cj1040c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1040c
gi|15791399|ref|NC_002163.1|	EMBL	gene	975230	976081	.	-	.	ID=gene-Cj1041c;Name=Cj1041c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1041c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	975230	976081	.	-	0	ID=cds-CAL35159.1;Parent=gene-Cj1041c;Dbxref=EnsemblGenomes-Gn:Cj1041c,EnsemblGenomes-Tr:CAL35159,InterPro:IPR011042,UniProtKB/TrEMBL:Q0P9L1,NCBI_GP:CAL35159.1;Name=CAL35159.1;Note=Original (2000) note: Cj1041c%2C probable periplasmic ATP/GTP-binding protein%2C len: 283 aa%3B no Hp match. Contains probable N-terminal signal sequence and PS00017 ATP/GTP-binding site motif A (P-loop). Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj1041c;product=putative periplasmic ATP/GTP-binding protein;protein_id=CAL35159.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	975809	975832	.	-	.	ID=id-Cj1041c;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1041c
gi|15791399|ref|NC_002163.1|	EMBL	gene	976144	977034	.	-	.	ID=gene-Cj1042c;Name=Cj1042c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1042c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	976144	977034	.	-	0	ID=cds-CAL35160.1;Parent=gene-Cj1042c;Dbxref=EnsemblGenomes-Gn:Cj1042c,EnsemblGenomes-Tr:CAL35160,GOA:Q0P9L0,InterPro:IPR009057,InterPro:IPR018060,InterPro:IPR018062,UniProtKB/TrEMBL:Q0P9L0,NCBI_GP:CAL35160.1;Name=CAL35160.1;Note=Original (2000) note: Cj1042c%2C probable transcriptional regulatory protein%2C len: 296 aa%3B similar to many members of the ARAC/XYLS family e.g. VIRF_YEREN VIRULENCE regulon transcriptional activator (271 aa)%2Cfasta scores%3B opt: 220 z-score: 270.6 E(): 9e-08%2C 23.9%25 identity in 247 aa overlap%2C and LCRF_YERPE thermoregulatory protein LCRF (271 aa)%2C fasta scores%3B opt: 219 z-score: 269.4 E(): 1e-07%2C 23.5%25 identity in 247 aa overlap. No Hp match. Contains PS00041 Bacterial regulatory proteins%2C araC family signature%2C and Pfam match to entry PF00165 HTH_2%2C Bacterial regulatory helix-turn-helix proteins%2C araC family%3B~Updated (2006) note: No characterisation with acceptable identity score has been identified%2C so putative kept in product function. Literature search identified paper giving further clues to product function. Functional classification - Broad regulatory functions%3B~PMID:15201231;gbkey=CDS;inference=protein motif:Prosite:PS00041;locus_tag=Cj1042c;product=putative transcriptional regulatory protein;protein_id=CAL35160.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	976177	976311	.	-	.	ID=id-Cj1042c;Note=HMMPfam hit to PF00165%2C Bacterial regulatory helix-turn-helix protei%2C score 3.3e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00165;locus_tag=Cj1042c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	976192	976320	.	-	.	ID=id-Cj1042c-2;Note=PS00041 Bacterial regulatory proteins%2C araC family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00041;locus_tag=Cj1042c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	976327	976446	.	-	.	ID=id-Cj1042c-3;Note=HMMPfam hit to PF00165%2C Bacterial regulatory helix-turn-helix protei%2C score 0.096;gbkey=misc_feature;inference=protein motif:Pfam:PF00165;locus_tag=Cj1042c
gi|15791399|ref|NC_002163.1|	EMBL	gene	977031	977636	.	-	.	ID=gene-Cj1043c;Name=Cj1043c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1043c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	977031	977636	.	-	0	ID=cds-CAL35161.1;Parent=gene-Cj1043c;Dbxref=EnsemblGenomes-Gn:Cj1043c,EnsemblGenomes-Tr:CAL35161,GOA:Q0P9K9,InterPro:IPR003733,InterPro:IPR013785,InterPro:IPR022998,UniProtKB/TrEMBL:Q0P9K9,NCBI_GP:CAL35161.1;Name=CAL35161.1;Note=Original (2000) note: Cj1043c%2C possible transferase%2C len: 201 aa%3B similar to e.g. TENI_BACSU regulatory protein TENI (205 aa)%2C fasta scores%3B opt: 217 z-score: 277.4 E(): 3.8e-08%2C 26.3%25 identity in 171 aa overlap%2C and THIE_ECOLI thiamin-phosphate pyrophosphorylase (211 aa)%2C fasta scores%3B opt: 146 z-score: 190.3 E(): 0.0026%2C 27.9%25 identity in 154 aa overlap. No Hp ortholog. Also similar to Cj1081c (30.0%25 identity in 190 aa overlap)%3B~Updated (2006) note: Pfam domain PF02581 Thiamine monophosphate synthase/TENI identified by running own Pfam search. Product modified to more specific family member based on motif matches. Specific characterisation with acceptable identity score has not been carried out yet%2C so putative kept in product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Thiamine;gbkey=CDS;inference=protein motif:Pfam:PF02581;locus_tag=Cj1043c;product=putative thiamine-phosphate pyrophosphorylase;protein_id=CAL35161.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	977626	978771	.	-	.	ID=gene-Cj1044c;Name=thiH;gbkey=Gene;gene=thiH;gene_biotype=protein_coding;locus_tag=Cj1044c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	977626	978771	.	-	0	ID=cds-CAL35162.1;Parent=gene-Cj1044c;Dbxref=EnsemblGenomes-Gn:Cj1044c,EnsemblGenomes-Tr:CAL35162,GOA:Q0P9K8,InterPro:IPR006638,InterPro:IPR010722,InterPro:IPR012726,InterPro:IPR013785,UniProtKB/TrEMBL:Q0P9K8,NCBI_GP:CAL35162.1;Name=CAL35162.1;Note=Original (2000) note: Cj1044c%2C thiH%2C probable thiamine biosynthesis protein%2C len: 381 aa%3B similar to THIH_ECOLI THIH protein (377 aa)%2C fasta scores%3B opt: 785 z-score: 909.4 E(): 0%2C 37.4%25 identity in 350 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF06968 Biotin and Thiamin Synthesis associated domain and PF04055 Radical SAM superfamily were identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Based on recent characterisation papers within Escherichia coli%2C product function modified to more specific family member. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Thiamine%3B~PMID:8432721%2C PMID:10082377%2C PMID:14757766%2CPMID:12650933%2C PMID:15271986;gbkey=CDS;gene=thiH;inference=protein motif:Pfam:PF06968;locus_tag=Cj1044c;product=thiazole biosynthesis protein ThiH;protein_id=CAL35162.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	977656	977976	.	-	.	ID=id-Cj1044c;Note=HMMPfam hit to PF06968%2C Biotin and Thiamin Synthesis associated d%2C score 1.4e-41;gbkey=misc_feature;gene=thiH;inference=protein motif:Pfam:PF06968;locus_tag=Cj1044c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	978013	978504	.	-	.	ID=id-Cj1044c-2;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 2.4e-10;gbkey=misc_feature;gene=thiH;inference=protein motif:Pfam:PF04055;locus_tag=Cj1044c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	978064	978087	.	-	.	ID=id-Cj1044c-3;Note=PS00030 Eukaryotic putative RNA-binding region RNP-1 signature;gbkey=misc_feature;gene=thiH;inference=protein motif:Prosite:PS00030;locus_tag=Cj1044c
gi|15791399|ref|NC_002163.1|	EMBL	gene	978774	979550	.	-	.	ID=gene-Cj1045c;Name=thiG;gbkey=Gene;gene=thiG;gene_biotype=protein_coding;locus_tag=Cj1045c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	978774	979550	.	-	0	ID=cds-CAL35163.1;Parent=gene-Cj1045c;Dbxref=EnsemblGenomes-Gn:Cj1045c,EnsemblGenomes-Tr:CAL35163,GOA:Q9PNP6,InterPro:IPR008867,InterPro:IPR013785,NCBI_GP:CAL35163.1;Name=CAL35163.1;Note=Original (2000) note: Cj1045c%2C thiG%2C probable thiamine biosynthesis protein%2C len: 258 aa%3B simlar to many e.g. THIG_ECOLI THIG protein (281 aa)%2C fasta scores%3B opt: 688 z-score: 824.2 E(): 0%2C 47.6%25 identity in 252 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF05690 Thiazole biosynthesis protein ThiG identified within CDS. Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Thiamine%3B~PMID:8432721%2C PMID:12650933%2C PMID:15489164;gbkey=CDS;gene=thiG;inference=protein motif:Pfam:PF05690;locus_tag=Cj1045c;product=thiazole biosynthesis protein ThiG;protein_id=CAL35163.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	978780	979526	.	-	.	ID=id-Cj1045c;Note=HMMPfam hit to PF05690%2C Thiazole biosynthesis protein ThiG%2C score 8.9e-158;gbkey=misc_feature;gene=thiG;inference=protein motif:Pfam:PF05690;locus_tag=Cj1045c
gi|15791399|ref|NC_002163.1|	EMBL	gene	979553	980356	.	-	.	ID=gene-Cj1046c;Name=moeB;gbkey=Gene;gene=moeB;gene_biotype=protein_coding;locus_tag=Cj1046c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	979553	980356	.	-	0	ID=cds-CAL35164.1;Parent=gene-Cj1046c;Dbxref=EnsemblGenomes-Gn:Cj1046c,EnsemblGenomes-Tr:CAL35164,GOA:Q0P9K6,InterPro:IPR000594,InterPro:IPR009036,InterPro:IPR012729,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P9K6,NCBI_GP:CAL35164.1;Name=CAL35164.1;Note=Original (2000) note: Cj1046c%2C moeB%2C probable molybdopterin biosynthesis protein%2C len: 267 aa%3B similar to e.g. MOEB_ECOLI molybdopterin biosynthesis MOEB protein (249 aa)%2C fasta scores%3B opt: 256 z-score: 309.6 E(): 6e-1%2C28.6%25 identity in 192 aa overlap. 34.2%25 identity to HP0814. Contains Pfam match to entry PF00899 ThiF_family%3B~Updated (2006) note: Characterisation has been carried out in Escerichia coli%2C however%2C identity score was marginal%2C so putative kept in product function. Recent literature search has shown strong similarity with ThiF protein. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Thiamine%3B~PMID:11463785%2C PMID:16388576%2C PMID:12234097;gbkey=CDS;gene=moeB;inference=protein motif:Pfam:PF00899;locus_tag=Cj1046c;product=putative molybdopterin biosynthesis protein;protein_id=CAL35164.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	979703	980110	.	-	.	ID=id-Cj1046c;Note=HMMPfam hit to PF00899%2C ThiF family%2C score 4.1e-30;gbkey=misc_feature;gene=moeB;inference=protein motif:Pfam:PF00899;locus_tag=Cj1046c
gi|15791399|ref|NC_002163.1|	EMBL	gene	980353	980544	.	-	.	ID=gene-Cj1047c;Name=thiS;gbkey=Gene;gene=thiS;gene_biotype=protein_coding;locus_tag=Cj1047c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	980353	980544	.	-	0	ID=cds-CAL35165.1;Parent=gene-Cj1047c;Dbxref=EnsemblGenomes-Gn:Cj1047c,EnsemblGenomes-Tr:CAL35165,InterPro:IPR003749,InterPro:IPR010035,InterPro:IPR012675,InterPro:IPR016155,UniProtKB/TrEMBL:Q0P9K5,NCBI_GP:CAL35165.1;Name=CAL35165.1;Note=Original (2000) note: Cj1047c%2C unknown%2C len: 63 aa%3B similar to hypothetical proteins e.g. YC40_ODOSI (73 aa)%2Cfasta scores%3B opt: 131 z-score: 200.4 E(): 0.00072%2C 37.1%25 identity in 62 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02597 ThiS family identified within CDS. Product modified to a more specific family member based on motif match. Characterisation has been carried out within Escherichia coli and Bacillus subtilis with marginal simlilarity score. Putativae kept in product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Thiamine%3B~PMID:15489164%2C PMID:15362849;gbkey=CDS;gene=thiS;inference=protein motif:Pfam:PF02597;locus_tag=Cj1047c;product=putative thiamine biosynthesis protein;protein_id=CAL35165.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	980356	980544	.	-	.	ID=id-Cj1047c;Note=HMMPfam hit to PF02597%2C ThiS family%2C score 1.4e-12;gbkey=misc_feature;gene=thiS;inference=protein motif:Pfam:PF02597;locus_tag=Cj1047c
gi|15791399|ref|NC_002163.1|	EMBL	gene	980554	981651	.	-	.	ID=gene-Cj1048c;Name=dapE;gbkey=Gene;gene=dapE;gene_biotype=protein_coding;locus_tag=Cj1048c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	980554	981651	.	-	0	ID=cds-CAL35166.1;Parent=gene-Cj1048c;Dbxref=EnsemblGenomes-Gn:Cj1048c,EnsemblGenomes-Tr:CAL35166,GOA:Q0P9K4,InterPro:IPR001261,InterPro:IPR002933,InterPro:IPR005941,InterPro:IPR011650,NCBI_GP:CAL35166.1;Name=CAL35166.1;Note=Original (2000) note: Cj1048c%2C dapE%2C probable succinyl-diaminopimelate desuccinylase%2C len: 365 aa%3B simlar to many e.g. DAPE_ECOLI succinyl-diaminopimelate desuccinylase (EC 3.5.1.18) (375 aa)%2C fasta scores%3B opt: 744 z-score: 854.0 E(): 0%2C 35.9%25 identity in 370 aa overlap. 48.7%25 identity to HP0212. Contains PS00758 ArgE/dapE/ACY1/CPG2/yscS family signature 1%3B~Updated (2006) note: Pfam domains PF01546 Peptidase family M20/M25/M40 and PF07687 Peptidase dimerisation domain were identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score along with appropriate motif matches. Thus%2C putative not added to product function. Functional classification - Amino acid biosynthesis - Aspartate family%3B~PMID:1644752;gbkey=CDS;gene=dapE;inference=protein motif:Prosite:PS00758;locus_tag=Cj1048c;product=succinyl-diaminopimelate desuccinylase;protein_id=CAL35166.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	980560	981471	.	-	.	ID=id-Cj1048c;Note=HMMPfam hit to PF01546%2C Peptidase family M20/M25/M40%2C score 1.5e-35;gbkey=misc_feature;gene=dapE;inference=protein motif:Pfam:PF01546;locus_tag=Cj1048c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	980824	981150	.	-	.	ID=id-Cj1048c-2;Note=HMMPfam hit to PF07687%2C Peptidase dimerisation domain%2C score 9.4e-17;gbkey=misc_feature;gene=dapE;inference=protein motif:Pfam:PF07687;locus_tag=Cj1048c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	981445	981474	.	-	.	ID=id-Cj1048c-3;Note=PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1;gbkey=misc_feature;gene=dapE;inference=protein motif:Prosite:PS00758;locus_tag=Cj1048c
gi|15791399|ref|NC_002163.1|	EMBL	gene	981655	982254	.	-	.	ID=gene-Cj1049c;Name=Cj1049c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1049c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	981655	982254	.	-	0	ID=cds-CAL35167.1;Parent=gene-Cj1049c;Dbxref=EnsemblGenomes-Gn:Cj1049c,EnsemblGenomes-Tr:CAL35167,GOA:Q0P9K3,InterPro:IPR001123,UniProtKB/TrEMBL:Q0P9K3,NCBI_GP:CAL35167.1;Name=CAL35167.1;Note=Original (2000) note: Cj1049c%2C probable integral membrane protein%2C len: 199 aa%3B similar to hypothetical membrane proteins belonging to the UPF0056 (MARC) family e.g. YVBG_BACSU (211 aa)%2C fasta scores%3B opt: 173 z-score: 220.6 E(): 5.4e-05%2C 32.8%25 identity in 189 aa overlap. No Hp match%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Also%2C Pfam domain PF01810 LysE type translocator identified within CDS. Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. Product modified to more specific family member based on motif match. Characterisation has not been specifically carried out%2C so putative kept in product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1049c;product=putative LysE family transporter protein;protein_id=CAL35167.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	981685	981753	.	-	.	ID=id-Cj1049c;Note=6 probable transmembrane helices predicted for Cj1049c by TMHMM2.0 at aa 5-27%2C 40-62%2C 66-88%2C 109-131%2C141-163 and 168-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1049c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	981766	981834	.	-	.	ID=id-Cj1049c;Note=6 probable transmembrane helices predicted for Cj1049c by TMHMM2.0 at aa 5-27%2C 40-62%2C 66-88%2C 109-131%2C141-163 and 168-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1049c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	981862	981930	.	-	.	ID=id-Cj1049c;Note=6 probable transmembrane helices predicted for Cj1049c by TMHMM2.0 at aa 5-27%2C 40-62%2C 66-88%2C 109-131%2C141-163 and 168-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1049c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	981991	982059	.	-	.	ID=id-Cj1049c;Note=6 probable transmembrane helices predicted for Cj1049c by TMHMM2.0 at aa 5-27%2C 40-62%2C 66-88%2C 109-131%2C141-163 and 168-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1049c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	982069	982137	.	-	.	ID=id-Cj1049c;Note=6 probable transmembrane helices predicted for Cj1049c by TMHMM2.0 at aa 5-27%2C 40-62%2C 66-88%2C 109-131%2C141-163 and 168-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1049c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	982174	982242	.	-	.	ID=id-Cj1049c;Note=6 probable transmembrane helices predicted for Cj1049c by TMHMM2.0 at aa 5-27%2C 40-62%2C 66-88%2C 109-131%2C141-163 and 168-190;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1049c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	981667	982218	.	-	.	ID=id-Cj1049c-2;Note=HMMPfam hit to PF01810%2C LysE type translocator%2Cscore 3.1e-59;gbkey=misc_feature;inference=protein motif:Pfam:PF01810;locus_tag=Cj1049c
gi|15791399|ref|NC_002163.1|	EMBL	gene	982247	982948	.	-	.	ID=gene-Cj1050c;Name=npdA;gbkey=Gene;gene=npdA;gene_biotype=protein_coding;locus_tag=Cj1050c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	982247	982948	.	-	0	ID=cds-CAL35168.1;Parent=gene-Cj1050c;Dbxref=EnsemblGenomes-Gn:Cj1050c,EnsemblGenomes-Tr:CAL35168,GOA:Q9JN05,InterPro:IPR003000,InterPro:IPR026590,InterPro:IPR026591,InterPro:IPR027546,InterPro:IPR029035,NCBI_GP:CAL35168.1;Name=CAL35168.1;Note=Original (2000) note: Cj1050c%2C possible transferase%2C len: 233 aa%3B similar to hypothetical proteins and to TR:G2996605 (EMBL:U89687) putative nicotinic acid mononucleotide:5%2C6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (cobB) gene (237 aa)%2C fasta scores%3B opt: 486 z-score: 586.6 E(): 2.2e-25%2C 37.7%25 identity in 207 aa overlap. 42.4%25 identity to HP1259%3B~Updated (2006) note: Pfam domain PF02146 Sir2 family identified within CDS. These sequences represent the Sir2 family of NAD+-dependent deacetylases. Characterisation has been carried out in Escherichia coli and this matches up with acceptable identity score and appropriate motifs. Product modified to more specific family member. Putative not added to product function. Functional classification - Misc%3B~PMID:10811920%2C PMID:15019790;gbkey=CDS;gene=npdA;inference=protein motif:Pfam:PF02146;locus_tag=Cj1050c;product=NAD-dependent deacetylase;protein_id=CAL35168.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	982412	982924	.	-	.	ID=id-Cj1050c;Note=HMMPfam hit to PF02146%2C Sir2 family%2C score 4.1e-40;gbkey=misc_feature;gene=npdA;inference=protein motif:Pfam:PF02146;locus_tag=Cj1050c
gi|15791399|ref|NC_002163.1|	EMBL	gene	982991	987010	.	-	.	ID=gene-Cj1051c;Name=cjeI;gbkey=Gene;gene=cjeI;gene_biotype=protein_coding;locus_tag=Cj1051c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	982991	987010	.	-	0	ID=cds-CAL35169.1;Parent=gene-Cj1051c;Dbxref=EnsemblGenomes-Gn:Cj1051c,EnsemblGenomes-Tr:CAL35169,GOA:Q0P9K1,InterPro:IPR000055,InterPro:IPR002052,InterPro:IPR002296,InterPro:IPR003356,InterPro:IPR029063,InterPro:IPR029464,UniProtKB/TrEMBL:Q0P9K1,NCBI_GP:CAL35169.1;Name=CAL35169.1;Note=Original (2000) note: Cj1051c%2C probable restriction modification enzyme%2C len: 1339 aa%3B similar in N-terminal 70%25 to TR:O85299 (EMBL:AF060542) Haemophilus influenzae biogroup aegyptius HaeIV restriction/modification system (953 aa)%2C fasta scores%3B opt: 1818 z-score: 1949.8 E(): 0 42.7%25 identity in 976 aa overlap%2C and in extreme C-terminus to e.g. T1SA_ECOLI type I restriction enzyme ECOAI specificity protein (589 aa)%2C fasta scores%3B opt: 393 z-score: 422.5 E(): 3.1e-16%2C 40.4%25 identity in 178 aa overlap. No Hp ortholog. Contains PS00092 N-6 Adenine-specific DNA methylases signature%3B~Updated (2006) note: Pfam domains PF01420 x2 Type I restriction modification DNA specificity domain was identified within CDS. Prosite domain PS00290 IG_MHC%2CImmunoglobulins and major histocompatibility complex proteins signature was also identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:2642743%2C PMID:12879741%2C PMID:15699185;gbkey=CDS;gene=cjeI;inference=protein motif:Prosite:PS00290;locus_tag=Cj1051c;product=restriction modification enzyme;protein_id=CAL35169.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	983072	983575	.	-	.	ID=id-Cj1051c;Note=HMMPfam hit to PF01420%2C Type I restriction modification DNA speci%2C score 8.2e-06;gbkey=misc_feature;gene=cjeI;inference=protein motif:Pfam:PF01420;locus_tag=Cj1051c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	983888	984340	.	-	.	ID=id-Cj1051c-2;Note=HMMPfam hit to PF01420%2C Type I restriction modification DNA speci%2C score 4.8e-08;gbkey=misc_feature;gene=cjeI;inference=protein motif:Pfam:PF01420;locus_tag=Cj1051c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	985373	985393	.	-	.	ID=id-Cj1051c-3;Note=PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=misc_feature;gene=cjeI;inference=protein motif:Prosite:PS00092;locus_tag=Cj1051c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	985649	985669	.	-	.	ID=id-Cj1051c-4;Note=PS00290 Immunoglobulins and major histocompatibility complex proteins signature;gbkey=misc_feature;gene=cjeI;inference=protein motif:Prosite:PS00290;locus_tag=Cj1051c
gi|15791399|ref|NC_002163.1|	EMBL	gene	987019	989229	.	-	.	ID=gene-Cj1052c;Name=mutS;gbkey=Gene;gene=mutS;gene_biotype=protein_coding;locus_tag=Cj1052c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	987019	989229	.	-	0	ID=cds-CAL35170.1;Parent=gene-Cj1052c;Dbxref=EnsemblGenomes-Gn:Cj1052c,EnsemblGenomes-Tr:CAL35170,GOA:Q0P9K0,InterPro:IPR000432,InterPro:IPR002625,InterPro:IPR005747,InterPro:IPR007696,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9K0,NCBI_GP:CAL35170.1;Name=CAL35170.1;Note=Original (2000) note: Cj1052c%2C mutS%2C possible mismatch repair protein%2C len: 736 aa%3B similar to several predicted mutS homologs%2C e.g. MUS2_AQUAE MUTS2 protein (762 aa)%2C fasta scores%3B opt: 706 z-score: 740.6 E(): 0%2C26.4%25 identity in 709 aa overlap%2C and to eukaryotic mismatch repair proteins e.g. MSH2_DROME DNA mismatch repair protein spellchecker 1 (913 aa)%2C fasta scores%3B opt: 225 z-score: 236.1 E(): 7.5e-06%2C 21.9%25 identity in 548 aa overlap. Weak similarity to mutS proteins e.g. MUTS_BACSU DNA mismatch repair protein MUTS (852 aa)%2C fasta scores%3B opt: 192 z-score: 202.0 E(): 0.0006%2C 20.3%25 identity in 395 aa overlap. 44.2%25 identity to HP0621. Contains PS00017 ATP/GTP-binding site motif A (P-loop). Cj does not appear to have a closer match to mutS%3B~Updated (2006) note: Pfam domain PF01713 Smr (Small MutS Related protein) domain identified within CDS. Not fully characterised in related bacteria with acceptable identity score%2C so putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair;gbkey=CDS;gene=mutS;inference=protein motif:Prosite:PS00017;locus_tag=Cj1052c;product=putative mismatch repair protein;protein_id=CAL35170.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	987022	987246	.	-	.	ID=id-Cj1052c;Note=HMMPfam hit to PF01713%2C Smr domain%2C score 2.2e-31;gbkey=misc_feature;gene=mutS;inference=protein motif:Pfam:PF01713;locus_tag=Cj1052c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	988273	988296	.	-	.	ID=id-Cj1052c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=mutS;inference=protein motif:Prosite:PS00017;locus_tag=Cj1052c
gi|15791399|ref|NC_002163.1|	EMBL	gene	989219	989569	.	-	.	ID=gene-Cj1053c;Name=Cj1053c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1053c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	989219	989569	.	-	0	ID=cds-CAL35171.1;Parent=gene-Cj1053c;Dbxref=EnsemblGenomes-Gn:Cj1053c,EnsemblGenomes-Tr:CAL35171,UniProtKB/TrEMBL:Q0P9J9,NCBI_GP:CAL35171.1;Name=CAL35171.1;Note=Original (2000) note: Cj1053c%2C possible integral membrane protein%2C len: 116 aa%3B 25.4%25 identity to HP0622%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1053c;product=putative integral membrane protein;protein_id=CAL35171.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	989423	989476	.	-	.	ID=id-Cj1053c;Note=2 probable transmembrane helices predicted for Cj1053c by TMHMM2.0 at aa 5-22 and 32-49;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1053c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	989504	989557	.	-	.	ID=id-Cj1053c;Note=2 probable transmembrane helices predicted for Cj1053c by TMHMM2.0 at aa 5-22 and 32-49;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1053c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	989562	990860	.	-	.	ID=gene-Cj1054c;Name=murC;gbkey=Gene;gene=murC;gene_biotype=protein_coding;locus_tag=Cj1054c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	989562	990860	.	-	0	ID=cds-CAL35172.1;Parent=gene-Cj1054c;Dbxref=EnsemblGenomes-Gn:Cj1054c,EnsemblGenomes-Tr:CAL35172,GOA:Q9PNN7,InterPro:IPR000713,InterPro:IPR004101,InterPro:IPR005758,InterPro:IPR013221,InterPro:IPR016040,NCBI_GP:CAL35172.1;Name=CAL35172.1;Note=Original (2000) note: Cj1054c%2C murC%2C probable UDP-N-acetylmuramate--alanine ligase%2C len: 432 aa%3B similar to many e.g. MURC_BACSU UDP-N-acetylmuramate--alanine ligase (EC 6.3.2.8) (432 aa)%2C fasta scores%3B opt: 590 z-score: 678.6 E(): 1.7e-30%2C 30.6%25 identity in 447 aa overlap. 52.5%25 identity to HP0623%3B~Updated (2006) note: Pfam domains PF01225 Mur ligase family%2C catalytic domain and PF02875 Mur ligase family%2C glutamate ligase domain were identified within CDS. Further support given to product function. Characterised in Bacillus subtilis and Escherichia coli with acceptable identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:8733232%2C PMID:12876369;gbkey=CDS;gene=murC;inference=protein motif:Pfam:PF02875;locus_tag=Cj1054c;product=UDP-N-acetylmuramate--alanine ligase;protein_id=CAL35172.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	989712	989990	.	-	.	ID=id-Cj1054c;Note=HMMPfam hit to PF02875%2C Mur ligase family%2Cglutamate ligase doma%2C score 1.1e-24;gbkey=misc_feature;gene=murC;inference=protein motif:Pfam:PF02875;locus_tag=Cj1054c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	990015	990749	.	-	.	ID=id-Cj1054c-2;Note=HMMPfam hit to PF01225%2C Mur ligase family%2Ccatalytic domain%2C score 6.5e-27;gbkey=misc_feature;gene=murC;inference=protein motif:Pfam:PF01225;locus_tag=Cj1054c
gi|15791399|ref|NC_002163.1|	EMBL	gene	990924	992897	.	-	.	ID=gene-Cj1055c;Name=Cj1055c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1055c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	990924	992897	.	-	0	ID=cds-CAL35173.1;Parent=gene-Cj1055c;Dbxref=EnsemblGenomes-Gn:Cj1055c,EnsemblGenomes-Tr:CAL35173,GOA:Q0P9J7,InterPro:IPR000917,InterPro:IPR017849,InterPro:IPR017850,UniProtKB/TrEMBL:Q0P9J7,NCBI_GP:CAL35173.1;Name=CAL35173.1;Note=Original (2000) note: Cj1055c%2C probable integral membrane protein%2C len: 657 aa%3B weakly similar to hypothetical proteins%2C e.g. YQGS_BACSU (638 aa)%2C fasta scores%3B opt: 197 z-score: 215.2 E(): 0.00011%2C 22.1%25 identity in 602 aa overlap. 24.3%25 identity to HP0578. Contains PS00044 Bacterial regulatory proteins%2C lysR family signature%2C though this may be spurious%3B~Updated (2006) note: Pfam domain PF00884 Sulfatase identified within CDS. Sulfatases are enzymes that hydrolyze various sulphate esters. Five probable transmembrane helices predicted by TMHMM2.0. Product function modified to more specific family member based on motif match. No specific characterisation has been carried out yet%2C so putative kept in product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1055c;product=putative sulfatase family protein;protein_id=CAL35173.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	992298	992366	.	-	.	ID=id-Cj1055c;Note=5 probable transmembrane helices predicted for Cj1055c by TMHMM2.0 at aa 5-27%2C 55-77%2C 90-112%2C 149-171 and 178-200;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1055c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	992385	992453	.	-	.	ID=id-Cj1055c;Note=5 probable transmembrane helices predicted for Cj1055c by TMHMM2.0 at aa 5-27%2C 55-77%2C 90-112%2C 149-171 and 178-200;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1055c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	992562	992630	.	-	.	ID=id-Cj1055c;Note=5 probable transmembrane helices predicted for Cj1055c by TMHMM2.0 at aa 5-27%2C 55-77%2C 90-112%2C 149-171 and 178-200;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1055c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	992667	992735	.	-	.	ID=id-Cj1055c;Note=5 probable transmembrane helices predicted for Cj1055c by TMHMM2.0 at aa 5-27%2C 55-77%2C 90-112%2C 149-171 and 178-200;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1055c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	992817	992885	.	-	.	ID=id-Cj1055c;Note=5 probable transmembrane helices predicted for Cj1055c by TMHMM2.0 at aa 5-27%2C 55-77%2C 90-112%2C 149-171 and 178-200;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1055c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	990975	992069	.	-	.	ID=id-Cj1055c-2;Note=HMMPfam hit to PF00884%2C Sulfatase%2C score 1.4e-94;gbkey=misc_feature;inference=protein motif:Pfam:PF00884;locus_tag=Cj1055c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	992586	992618	.	-	.	ID=id-Cj1055c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1055c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	992643	992735	.	-	.	ID=id-Cj1055c-4;Note=PS00044 Bacterial regulatory proteins%2C lysR family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00044;locus_tag=Cj1055c
gi|15791399|ref|NC_002163.1|	EMBL	gene	992909	993685	.	-	.	ID=gene-Cj1056c;Name=Cj1056c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1056c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	992909	993685	.	-	0	ID=cds-CAL35174.1;Parent=gene-Cj1056c;Dbxref=EnsemblGenomes-Gn:Cj1056c,EnsemblGenomes-Tr:CAL35174,GOA:Q0P9J6,InterPro:IPR003010,UniProtKB/TrEMBL:Q0P9J6,NCBI_GP:CAL35174.1;Name=CAL35174.1;Note=Original (2000) note: Cj1056c%2C unknown%2C len: 258 aa%3B similar to hypothetical proteins e.g. TR:O59829 (EMBL:AL023590) Schizosaccharomyces pombe putative nitrilase SPCC965.09 (272 aa)%2C fasta scores%3B opt: 175 z-score: 224.3 E(): 3.4e-05%2C 25.1%25 identity in 187 aa overlap. 38.8%25 identity to HP1481%3B~Updated (2006) note: Prosite domain PS50263 CN_HYDROLASE%2C Carbon-nitrogen hydrolase domain%2CNitrilase/cyanide hydratase and apolipoprotein N-acyltransferase identified within CDS. Product modified to more specific family member due to motif match. No specific characterisation yet%2C so putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS50263;locus_tag=Cj1056c;product=putative carbon-nitrogen hydrolase family protein;protein_id=CAL35174.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	993678	993851	.	-	.	ID=gene-Cj1057c;Name=Cj1057c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1057c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	993678	993851	.	-	0	ID=cds-CAL35175.1;Parent=gene-Cj1057c;Dbxref=EnsemblGenomes-Gn:Cj1057c,EnsemblGenomes-Tr:CAL35175,GOA:Q0P9J5,InterPro:IPR003761,UniProtKB/TrEMBL:Q0P9J5,NCBI_GP:CAL35175.1;Name=CAL35175.1;Note=Original (2000) note: Cj1057c%2C probable coiled-coil protein%2C len: 57 aa%3B 31.5%25 identity to HP1482. Contains coiled-coil prediction for entire length. Functional classification - Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1057c;product=putative coiled-coil protein;protein_id=CAL35175.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	993848	995305	.	-	.	ID=gene-Cj1058c;Name=guaB;gbkey=Gene;gene=guaB;gene_biotype=protein_coding;locus_tag=Cj1058c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	993848	995305	.	-	0	ID=cds-CAL35176.1;Parent=gene-Cj1058c;Dbxref=EnsemblGenomes-Gn:Cj1058c,EnsemblGenomes-Tr:CAL35176,GOA:Q0P9J4,InterPro:IPR000644,InterPro:IPR001093,InterPro:IPR005990,InterPro:IPR013785,InterPro:IPR015875,PDB:4MZ1,PDB:4MZ8,PDB:4R7J,UniProtKB/TrEMBL:Q0P9J4,NCBI_GP:CAL35176.1;Name=CAL35176.1;Note=Original (2000) note: Cj1058c%2C guaB%2C probable inosine-5'-monophosphate dehydrogenase%2C len: 485 aa%3B highly similar to many e.g. IMDH_ECOLI inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (488 aa)%2C fasta scores%3B opt: 1819 z-score: 1884.8 E(): 0%2C 57.3%25 identity in 485 aa overlap. 67.7%25 identity to HP0829. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C 2x Pfam match to entry PF00571 CBS%2C CBS domain%2C PS00487 IMP dehydrogenase/GMP reductase signature%2C and Pfam match to entry PF00478 IMPDH%2C IMP dehydrogenase/GMP reductase%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Purine ribonucleotide biosynthesis%3B~PMID:6461728%2C PMID:1979163;gbkey=CDS;gene=guaB;inference=protein motif:Prosite:PS00487;locus_tag=Cj1058c;product=inosine-5'-monophosphate dehydrogenase;protein_id=CAL35176.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	993899	995290	.	-	.	ID=id-Cj1058c;Note=HMMPfam hit to PF00478%2C IMP dehydrogenase / GMP reductase domain%2C score 4.6e-211;gbkey=misc_feature;gene=guaB;inference=protein motif:Pfam:PF00478;locus_tag=Cj1058c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	994397	994435	.	-	.	ID=id-Cj1058c-2;Note=PS00487 IMP dehydrogenase / GMP reductase signature;gbkey=misc_feature;gene=guaB;inference=protein motif:Prosite:PS00487;locus_tag=Cj1058c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	994694	994855	.	-	.	ID=id-Cj1058c-3;Note=HMMPfam hit to PF00571%2C CBS domain%2C score 4.4e-11;gbkey=misc_feature;gene=guaB;inference=protein motif:Pfam:PF00571;locus_tag=Cj1058c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	994877	995038	.	-	.	ID=id-Cj1058c-4;Note=HMMPfam hit to PF00571%2C CBS domain%2C score 1.3e-17;gbkey=misc_feature;gene=guaB;inference=protein motif:Pfam:PF00571;locus_tag=Cj1058c
gi|15791399|ref|NC_002163.1|	EMBL	gene	995315	996676	.	-	.	ID=gene-Cj1059c;Name=gatA;gbkey=Gene;gene=gatA;gene_biotype=protein_coding;locus_tag=Cj1059c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	995315	996676	.	-	0	ID=cds-CAL35177.1;Parent=gene-Cj1059c;Dbxref=EnsemblGenomes-Gn:Cj1059c,EnsemblGenomes-Tr:CAL35177,GOA:Q9PNN2,InterPro:IPR000120,InterPro:IPR004412,InterPro:IPR020556,InterPro:IPR023631,NCBI_GP:CAL35177.1;Name=CAL35177.1;Note=Original (2000) note: Cj1059c%2C gatA%2C probable Glu-tRNAGln amidotransferase subunit A%2C len: 453 aa%3B similar to e.g. TR:O06491 (EMBL:AF008553) Bacillus subtilis Glu-tRNAGln amidotransferase subunit A (486 aa)%2Cfasta scores%3B opt: 1234 z-score: 1296.5 E(): 0%2C 49.0%25 identity in 420 aa overlap. 61.1%25 identity to HP0830. Contains PS00017 ATP/GTP-binding site motif A (P-loop) and PS00571 Amidases signature. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:9342321;gbkey=CDS;gene=gatA;inference=protein motif:Prosite:PS00571;locus_tag=Cj1059c;product=Glu-tRNAGln amidotransferase subunit A;protein_id=CAL35177.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	995354	996661	.	-	.	ID=id-Cj1059c;Note=HMMPfam hit to PF01425%2C Amidase%2C score 4.2e-161;gbkey=misc_feature;gene=gatA;inference=protein motif:Pfam:PF01425;locus_tag=Cj1059c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	996197	996292	.	-	.	ID=id-Cj1059c-2;Note=PS00571 Amidases signature;gbkey=misc_feature;gene=gatA;inference=protein motif:Prosite:PS00571;locus_tag=Cj1059c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	996323	996346	.	-	.	ID=id-Cj1059c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=gatA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1059c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	996335	996367	.	-	.	ID=id-Cj1059c-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=gatA;inference=protein motif:Prosite:PS00013;locus_tag=Cj1059c
gi|15791399|ref|NC_002163.1|	EMBL	gene	996673	996783	.	-	.	ID=gene-Cj1060c;Name=Cj1060c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1060c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	996673	996783	.	-	0	ID=cds-CAL35178.1;Parent=gene-Cj1060c;Dbxref=EnsemblGenomes-Gn:Cj1060c,EnsemblGenomes-Tr:CAL35178,UniProtKB/TrEMBL:Q0P9J2,NCBI_GP:CAL35178.1;Name=CAL35178.1;Note=Original (2000) note: Cj1060c%2C small hydrophobic protein%2C len: 36 aa. No Hp match%3B~Updated (2006) note: One probable transmembrane helix predicted for TMHMM2.0. Also%2C one signal peptide predicted by SignalP 2.0 HMM. Product function modified to more specific family member. Putative kept within product function. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1060c;product=putative membrane protein;protein_id=CAL35178.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	996697	996756	.	-	.	ID=id-Cj1060c;Note=1 probable transmembrane helix predicted for Cj1060c by TMHMM2.0 at aa 10-29;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1060c
gi|15791399|ref|NC_002163.1|	EMBL	gene	996777	999530	.	-	.	ID=gene-Cj1061c;Name=ileS;gbkey=Gene;gene=ileS;gene_biotype=protein_coding;locus_tag=Cj1061c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	996777	999530	.	-	0	ID=cds-CAL35179.1;Parent=gene-Cj1061c;Dbxref=EnsemblGenomes-Gn:Cj1061c,EnsemblGenomes-Tr:CAL35179,GOA:P41257,InterPro:IPR001412,InterPro:IPR002300,InterPro:IPR002301,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR013155,InterPro:IPR014729,InterPro:IPR023585,NCBI_GP:CAL35179.1;Name=CAL35179.1;Note=Updated (2006) note: Characterised in Campylobacter jejuni%2C so putative not added to product function%3B~Original (2000) note: Cj1061c%2C ileS%2C isoleucyl-tRNA synthetase%2C len: 917 aa%3B 98.7%25 identical to SYI_CAMJE isoleucyl-tRNA synthetase (EC 6.1.1.5) (917 aa)%2C and similar to many e.g. SYI_ECOLI (937 aa)%2C fasta scores%3B opt: 1919 z-score: 2244.1 E(): 0%2C 40.6%25 identity in 953 aa overlap. 49.5%25 identity to HP1422. Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature%2C and Pfam match to entry PF00133 tRNA-synt_1%2C tRNA synthetases class I. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:7582016;gbkey=CDS;gene=ileS;inference=protein motif:Prosite:PS00178;locus_tag=Cj1061c;product=isoleucyl-tRNA synthetase;protein_id=CAL35179.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	996798	996872	.	-	.	ID=id-Cj1061c;Note=HMMPfam hit to PF06827%2C Zinc finger found in FPG and IleRS%2C score 0.0023;gbkey=misc_feature;gene=ileS;inference=protein motif:Pfam:PF06827;locus_tag=Cj1061c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	997584	999455	.	-	.	ID=id-Cj1061c-2;Note=HMMPfam hit to PF00133%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score 0;gbkey=misc_feature;gene=ileS;inference=protein motif:Pfam:PF00133;locus_tag=Cj1061c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	998319	998351	.	-	.	ID=id-Cj1061c-3;Note=PS00133 Zinc carboxypeptidases%2C zinc-binding region 2 signature;gbkey=misc_feature;gene=ileS;inference=protein motif:Prosite:PS00133;locus_tag=Cj1061c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	999321	999356	.	-	.	ID=id-Cj1061c-4;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=ileS;inference=protein motif:Prosite:PS00178;locus_tag=Cj1061c
gi|15791399|ref|NC_002163.1|	EMBL	gene	999629	1000717	.	+	.	ID=gene-Cj1062;Name=Cj1062;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1062
gi|15791399|ref|NC_002163.1|	EMBL	CDS	999629	1000717	.	+	0	ID=cds-CAL35180.1;Parent=gene-Cj1062;Dbxref=EnsemblGenomes-Gn:Cj1062,EnsemblGenomes-Tr:CAL35180,InterPro:IPR008136,UniProtKB/TrEMBL:Q0P9J0,NCBI_GP:CAL35180.1;Name=CAL35180.1;Note=Original (2000) note: Cj1062%2C unknown%2C len: 362 aa%3B C-terminus is similar to hypothetical proteins e.g. YGAD_ENTAG (164 aa)%2C fasta scores%3B opt: 326 z-score: 399.0 E(): 6.3e-15%2C 39.9%25 identity in 153 aa overlap. 33.5%25 identity in C-terminus to HP0952%3B~Updated (2006) note: Pfam domain PF02464 Competence-damaged protein (CinA) identified within CDS. Product modified to more specific family member based on motif match. Specific characterisation not yet carried out%2C so putative kept within product function. Literature search identified paper (PMID:11895937)%2C giving further clues to product function. Functional classification -Pathogenicity%3B~PMID:11895937;gbkey=CDS;inference=protein motif:Pfam:PF02464;locus_tag=Cj1062;product=putative CinA-like protein;protein_id=CAL35180.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1000232	1000696	.	+	.	ID=id-Cj1062;Note=HMMPfam hit to PF02464%2C Competence-damaged protein%2Cscore 1.5e-28;gbkey=misc_feature;inference=protein motif:Pfam:PF02464;locus_tag=Cj1062
gi|15791399|ref|NC_002163.1|	EMBL	gene	1000729	1001154	.	+	.	ID=gene-Cj1063;Name=Cj1063;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1063
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1000729	1001154	.	+	0	ID=cds-CAL35181.1;Parent=gene-Cj1063;Dbxref=EnsemblGenomes-Gn:Cj1063,EnsemblGenomes-Tr:CAL35181,GOA:Q0P9I9,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q0P9I9,NCBI_GP:CAL35181.1;Name=CAL35181.1;Note=Original (2000) note: Cj1063%2C possible acetyltransferase%2C len: 141 aa%3B very weak similarity to PHNO_ECOLI PHNO protein (involved in alkylphosphonate uptake) (144 aa)%2C fasta scores%3B opt: 135 z-score: 184.7 E(): 0.0054%2C 26.8%25 identity in 138 aa overlap. No Hp match. Contains Pfam match to entry PF00583 Acetyltransf%2CAcetyltransferase (GNAT) family%3B~Updated (2006) note: Specific characterisation with acceptable identity score has not been carried out yet%2C so putative was kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF00583;locus_tag=Cj1063;product=putative acetyltransferase;protein_id=CAL35181.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1000861	1001115	.	+	.	ID=id-Cj1063;Note=HMMPfam hit to PF00583%2C Acetyltransferase (GNAT) family%2C score 1.1e-12;gbkey=misc_feature;inference=protein motif:Pfam:PF00583;locus_tag=Cj1063
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	1001218	1001520	.	+	.	ID=gene-Cj1064;Name=Cj1064;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj1064;part=1/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	1001523	1001837	.	+	.	ID=gene-Cj1064;Name=Cj1064;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj1064;part=2/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1001218	1001520	.	+	0	ID=cds-Cj1064;Parent=gene-Cj1064;Dbxref=PSEUDO:CAL35182.1;Note=Original (2000) note: Cj1064%2C possible nitroreductase pseudogene%2C len: 617 bp%3B similar to many e.g. YFKO_BACSU putative NAD(P)H nitroreductase YFKO (221 aa). Contains single frasemhift. Equivalent to HP0642%2C and similar to downstream (intact) gene Cj1066. Contains Pfam match to entry PF00881 Nitroreductase%3B~Updated (2006) note: Characterised within Escherichia coli and Bacillus subtilus with acceptable identity scores. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Misc%3B~PMID:8947835%2C PMID:7813889;gbkey=CDS;inference=protein motif:Pfam:PF00881;locus_tag=Cj1064;product=pseudogene (nitroreductase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1001523	1001837	.	+	0	ID=cds-Cj1064;Parent=gene-Cj1064;Dbxref=PSEUDO:CAL35182.1;Note=Original (2000) note: Cj1064%2C possible nitroreductase pseudogene%2C len: 617 bp%3B similar to many e.g. YFKO_BACSU putative NAD(P)H nitroreductase YFKO (221 aa). Contains single frasemhift. Equivalent to HP0642%2C and similar to downstream (intact) gene Cj1066. Contains Pfam match to entry PF00881 Nitroreductase%3B~Updated (2006) note: Characterised within Escherichia coli and Bacillus subtilus with acceptable identity scores. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Misc%3B~PMID:8947835%2C PMID:7813889;gbkey=CDS;inference=protein motif:Pfam:PF00881;locus_tag=Cj1064;product=pseudogene (nitroreductase);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1001236	1001520	.	+	.	ID=id-Cj1064;Note=HMMPfam hit to PF00881%2C Nitroreductase family%2Cscore 1.3e-32;gbkey=misc_feature;inference=protein motif:Pfam:PF00881;is_ordered=true;locus_tag=Cj1064;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1001523	1001762	.	+	.	ID=id-Cj1064;Note=HMMPfam hit to PF00881%2C Nitroreductase family%2Cscore 1.3e-32;gbkey=misc_feature;inference=protein motif:Pfam:PF00881;is_ordered=true;locus_tag=Cj1064;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1001837	1002442	.	+	.	ID=gene-Cj1066;Name=rdxA;gbkey=Gene;gene=rdxA;gene_biotype=protein_coding;locus_tag=Cj1066
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1001837	1002442	.	+	0	ID=cds-CAL35183.1;Parent=gene-Cj1066;Dbxref=EnsemblGenomes-Gn:Cj1066,EnsemblGenomes-Tr:CAL35183,GOA:Q0P9I8,InterPro:IPR000415,InterPro:IPR029479,UniProtKB/TrEMBL:Q0P9I8,NCBI_GP:CAL35183.1;Name=CAL35183.1;Note=Original (2000) note: Cj1066%2C rdxA%2C probable nitroreductase%2C len: 201 aa%3B similar to TR:O30585 (EMBL:AF012552) H. pylori NADPH-linked flavin nitroreductase RDXA (%3DHP0954) (210 aa)%2C fasta scores%3B opt: 261 z-score: 325.6 E(): 7.8e-11%2C 29.1%25 identity in 199 aa overlap. 28.3%25 identity to HP0954. Also similar to upstream pseudogene Cj1064. Contains Pfam match to entry PF00881 Nitroreductase%2C Nitroreductase family%3B~Updated (2006) note: Some characterisation in Helicobacter pylori. Appropriate motifs present. Putative not added to product function. Functional classification -Misc;gbkey=CDS;gene=rdxA;inference=protein motif:Pfam:PF00881;locus_tag=Cj1066;product=nitroreductase;protein_id=CAL35183.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1001858	1002376	.	+	.	ID=id-Cj1066;Note=HMMPfam hit to PF00881%2C Nitroreductase family%2Cscore 2e-33;gbkey=misc_feature;gene=rdxA;inference=protein motif:Pfam:PF00881;locus_tag=Cj1066
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	1002434	1002471	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1002434..1002471;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	1002567	1003103	.	+	.	ID=gene-Cj1067;Name=pgsA;gbkey=Gene;gene=pgsA;gene_biotype=protein_coding;locus_tag=Cj1067
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1002567	1003103	.	+	0	ID=cds-CAL35184.1;Parent=gene-Cj1067;Dbxref=EnsemblGenomes-Gn:Cj1067,EnsemblGenomes-Tr:CAL35184,GOA:Q0P9I7,InterPro:IPR000462,InterPro:IPR004570,UniProtKB/TrEMBL:Q0P9I7,NCBI_GP:CAL35184.1;Name=CAL35184.1;Note=Original (2000) note: Cj1067%2C pgsA%2C probable CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase%2C len: 201 aa%3B similar to many e.g. PGSA_ECOLI CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC 2.7.8.5) (181 aa)%2C fasta scores%3B opt: 320 z-score: 405.9 E(): 2.6e-15%2C 35.8%25 identity in 176 aa overlap. 43.9%25 identity to HP1016. Contains PS00379 CDP-alcohol phosphatidyltransferases signature%2C and Pfam match to entry PF01066 CDP-OH_P_transf%2C CDP-alcohol phosphatidyltransferase%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Synthesis and modification of macromolecules - Phospholipids%3B~PMID:6267013%2C PMID:9853401;gbkey=CDS;gene=pgsA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1067;product=CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase;protein_id=CAL35184.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1002585	1002638	.	+	.	ID=id-Cj1067;Note=4 probable transmembrane helices predicted for Cj1067 by TMHMM2.0 at aa 7-24%2C 34-56%2C 77-99 and 141-163;gbkey=misc_feature;gene=pgsA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1067;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1002666	1002734	.	+	.	ID=id-Cj1067;Note=4 probable transmembrane helices predicted for Cj1067 by TMHMM2.0 at aa 7-24%2C 34-56%2C 77-99 and 141-163;gbkey=misc_feature;gene=pgsA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1067;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1002795	1002863	.	+	.	ID=id-Cj1067;Note=4 probable transmembrane helices predicted for Cj1067 by TMHMM2.0 at aa 7-24%2C 34-56%2C 77-99 and 141-163;gbkey=misc_feature;gene=pgsA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1067;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1002987	1003055	.	+	.	ID=id-Cj1067;Note=4 probable transmembrane helices predicted for Cj1067 by TMHMM2.0 at aa 7-24%2C 34-56%2C 77-99 and 141-163;gbkey=misc_feature;gene=pgsA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1067;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1002681	1003070	.	+	.	ID=id-Cj1067-2;Note=HMMPfam hit to PF01066%2C CDP-alcohol phosphatidyltransferase%2C score 6.5e-30;gbkey=misc_feature;gene=pgsA;inference=protein motif:Pfam:PF01066;locus_tag=Cj1067
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1002720	1002788	.	+	.	ID=id-Cj1067-3;Note=PS00379 CDP-alcohol phosphatidyltransferases signature;gbkey=misc_feature;gene=pgsA;inference=protein motif:Prosite:PS00379;locus_tag=Cj1067
gi|15791399|ref|NC_002163.1|	EMBL	gene	1003100	1004206	.	+	.	ID=gene-Cj1068;Name=Cj1068;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1068
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1003100	1004206	.	+	0	ID=cds-CAL35185.1;Parent=gene-Cj1068;Dbxref=EnsemblGenomes-Gn:Cj1068,EnsemblGenomes-Tr:CAL35185,GOA:Q9PNM6,InterPro:IPR001478,InterPro:IPR004387,InterPro:IPR008915,NCBI_GP:CAL35185.1;Name=CAL35185.1;Note=Original (2000) note: Cj1068%2C probable integral membrane protein%2C len: 368 aa%3B similar to hypothetical proteins e.g. YAEL_ECOLI (450 aa)%2C fasta scores%3B opt: 341 z-score: 399.4 E(): 6e-15%2C 29.0%25 identity in 445 aa overlap. 39.6%25 identity to HP0258. Contains PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature%2C and Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF)%3B~Updated (2006) note: Pfam domain PF02163 Peptidase family M50 identified within CDS. Also%2C four probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member due to motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Degradation of macromolecules - Proteins%2Cpeptides and glycopeptides;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1068;product=putative peptidase M50 family protein;protein_id=CAL35185.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1003118	1003186	.	+	.	ID=id-Cj1068;Note=4 probable transmembrane helices predicted for Cj1068 by TMHMM2.0 at aa 7-29%2C 112-134%2C 291-313 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1068;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1003433	1003501	.	+	.	ID=id-Cj1068;Note=4 probable transmembrane helices predicted for Cj1068 by TMHMM2.0 at aa 7-29%2C 112-134%2C 291-313 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1068;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1003970	1004038	.	+	.	ID=id-Cj1068;Note=4 probable transmembrane helices predicted for Cj1068 by TMHMM2.0 at aa 7-29%2C 112-134%2C 291-313 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1068;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1004111	1004179	.	+	.	ID=id-Cj1068;Note=4 probable transmembrane helices predicted for Cj1068 by TMHMM2.0 at aa 7-29%2C 112-134%2C 291-313 and 338-360;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1068;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1003169	1004182	.	+	.	ID=id-Cj1068-2;Note=HMMPfam hit to PF02163%2C Peptidase family M50%2C score 1.2e-61;gbkey=misc_feature;inference=protein motif:Pfam:PF02163;locus_tag=Cj1068
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1003196	1003225	.	+	.	ID=id-Cj1068-3;Note=PS00142 Neutral zinc metallopeptidases%2Czinc-binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00142;locus_tag=Cj1068
gi|15791399|ref|NC_002163.1|	EMBL	gene	1004199	1005065	.	+	.	ID=gene-Cj1069;Name=Cj1069;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1069
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1004199	1005065	.	+	0	ID=cds-CAL35186.1;Parent=gene-Cj1069;Dbxref=EnsemblGenomes-Gn:Cj1069,EnsemblGenomes-Tr:CAL35186,InterPro:IPR007488,UniProtKB/TrEMBL:Q0P9I5,NCBI_GP:CAL35186.1;Name=CAL35186.1;Note=Original (2000) note: Cj1069%2C unknown%2C len: 288 aa%3B similar to hypothetical proteins e.g. YB19_HAEIN HI1119 (292 aa)%2C fasta scores%3B opt: 428 z-score: 534.0 E(): 1.9e-22%2C 34.1%25 identity in 290 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF04393 Protein of unknown function (DUF535) identified within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF04393;locus_tag=Cj1069;product=conserved hypothetical protein Cj1069;protein_id=CAL35186.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1004229	1005050	.	+	.	ID=id-Cj1069;Note=HMMPfam hit to PF04393%2C Protein of unknown function (DUF535)%2C score 6.6e-134;gbkey=misc_feature;inference=protein motif:Pfam:PF04393;locus_tag=Cj1069
gi|15791399|ref|NC_002163.1|	EMBL	gene	1005152	1005529	.	+	.	ID=gene-Cj1070;Name=rpsF;gbkey=Gene;gene=rpsF;gene_biotype=protein_coding;locus_tag=Cj1070
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1005152	1005529	.	+	0	ID=cds-CAL35187.1;Parent=gene-Cj1070;Dbxref=EnsemblGenomes-Gn:Cj1070,EnsemblGenomes-Tr:CAL35187,GOA:Q9ZAH3,InterPro:IPR000529,InterPro:IPR014717,InterPro:IPR020814,NCBI_GP:CAL35187.1;Name=CAL35187.1;Note=Original (2000) note: Cj1070%2C rpsF%2C 30S ribosomal protein S6%2C len: 125 aa%3B similar to many e.g. RS6_ECOLI 30S ribosomal protein S6 (135 aa)%2C fasta scores%3B opt: 180 z-score: 241.5 E(): 3.8e-06%2C 31.5%25 identity in 92 aa overlap. 54.5%25 identity to HP1246. Contains Pfam match to entry PF01250 Ribosomal_S6%3B~Updated (2006) note: Characterised within Escherichia coli with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:366612;gbkey=CDS;gene=rpsF;inference=protein motif:Pfam:PF01250;locus_tag=Cj1070;product=30S ribosomal protein S6;protein_id=CAL35187.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1005155	1005430	.	+	.	ID=id-Cj1070;Note=HMMPfam hit to PF01250%2C Ribosomal protein S6%2C score 3.5e-37;gbkey=misc_feature;gene=rpsF;inference=protein motif:Pfam:PF01250;locus_tag=Cj1070
gi|15791399|ref|NC_002163.1|	EMBL	gene	1005538	1006089	.	+	.	ID=gene-Cj1071;Name=ssb;gbkey=Gene;gene=ssb;gene_biotype=protein_coding;locus_tag=Cj1071
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1005538	1006089	.	+	0	ID=cds-CAL35188.1;Parent=gene-Cj1071;Dbxref=EnsemblGenomes-Gn:Cj1071,EnsemblGenomes-Tr:CAL35188,GOA:O69302,InterPro:IPR000424,InterPro:IPR011344,InterPro:IPR012340,NCBI_GP:CAL35188.1;Name=CAL35188.1;Note=Original (2000) note: Cj1071%2C ssb%2C single-strand DNA binding protein%2C len: 183 aa%3B 99.5%25 identical to TR:O69302 (EMBL:Y17166) C. jejuni ssb (183 aa)%2C and similar to many e.g. SSB_ECOLI (177 aa)%2C fasta scores%3B opt: 322 z-score: 365.8 E(): 4.5e-13%2C 34.9%25 identity in 186 aa overlap. 40.7%25 identity to HP1245. Contains PS00735 Single-strand binding protein family signature 1%2C and Pfam match to entry PF00436 SSB%2C Single-strand binding protein family%3B~Updated (2006) note: Characterised within Campylobacter jejuni and similar to others with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification - DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:9742705;gbkey=CDS;gene=ssb;inference=protein motif:Prosite:PS00735;locus_tag=Cj1071;product=single-strand DNA binding protein;protein_id=CAL35188.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1005541	1005852	.	+	.	ID=id-Cj1071;Note=HMMPfam hit to PF00436%2C Single-strand binding protein family%2C score 6.3e-33;gbkey=misc_feature;gene=ssb;inference=protein motif:Pfam:PF00436;locus_tag=Cj1071
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1005541	1005579	.	+	.	ID=id-Cj1071-2;Note=PS00735 Single-strand binding protein family signature 1;gbkey=misc_feature;gene=ssb;inference=protein motif:Prosite:PS00735;locus_tag=Cj1071
gi|15791399|ref|NC_002163.1|	EMBL	gene	1006100	1006360	.	+	.	ID=gene-Cj1072;Name=rpsR;gbkey=Gene;gene=rpsR;gene_biotype=protein_coding;locus_tag=Cj1072
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1006100	1006360	.	+	0	ID=cds-CAL35189.1;Parent=gene-Cj1072;Dbxref=EnsemblGenomes-Gn:Cj1072,EnsemblGenomes-Tr:CAL35189,GOA:O69301,InterPro:IPR001648,NCBI_GP:CAL35189.1;Name=CAL35189.1;Note=Original (2000) note: Cj1072%2C rpsR%2C 30S ribosomal protein S18%2C len: 86 aa%3B identical to TR:O69301 (EMBL:Y17166) C. jejuni rps18 (86 aa)%2C and similar to many e.g. RS18_ECOLI 30S ribosomal protein S18 (74 aa)%2C fasta scores%3B opt: 228 z-score: 348.5 E(): 4.1e-12%2C 50.7%25 identity in 69 aa overlap. 75.6%25 identity to HP1244. Contains Pfam match to entry PF01084 S18%2C Ribosomal protein S18%3B~Updated (2006) note: Characterised within Campylobacter jejuni and similar to others with acceptable identity score. Appropriate motifs present. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:366612%2C PMID:14762004;gbkey=CDS;gene=rpsR;inference=protein motif:Pfam:PF01084;locus_tag=Cj1072;product=30S ribosomal protein S18;protein_id=CAL35189.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1006145	1006306	.	+	.	ID=id-Cj1072;Note=HMMPfam hit to PF01084%2C Ribosomal protein S18%2Cscore 5.9e-25;gbkey=misc_feature;gene=rpsR;inference=protein motif:Pfam:PF01084;locus_tag=Cj1072
gi|15791399|ref|NC_002163.1|	EMBL	gene	1006421	1008796	.	-	.	ID=gene-Cj1073c;Name=lon;gbkey=Gene;gene=lon;gene_biotype=protein_coding;locus_tag=Cj1073c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1006421	1008796	.	-	0	ID=cds-CAL35190.1;Parent=gene-Cj1073c;Dbxref=EnsemblGenomes-Gn:Cj1073c,EnsemblGenomes-Tr:CAL35190,GOA:O69300,InterPro:IPR003111,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004815,InterPro:IPR008268,InterPro:IPR008269,InterPro:IPR014721,InterPro:IPR015947,InterPro:IPR020568,InterPro:IPR027065,InterPro:IPR027417,InterPro:IPR027543,NCBI_GP:CAL35190.1;Name=CAL35190.1;Note=Original (2000) note: Cj1073c%2C lon%2C ATP-dependent protease La%2C len: 791 aa%3B 99.7%25 identical to LON_CAMJE ATP-dependent protease La (EC 3.4.21.53) (791 aa)%2C and similar to many e.g. LON_ECOLI (784 aa)%2C fasta scores%3B opt: 1394 z-score: 1373.0 E(): 0%2C 39.9%25 identity in 782 aa overlap. 55.6%25 identity to HP1379. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS01046 ATP-dependent serine proteases%2C lon family%2C serine active site%2C and Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities%3B~Updated (2006) note: Characterised in Campylobacter jejuni%2C so putative not added to product function. Functional classification - Degradation of macromolecules - Proteins%2C peptides and glycopeptides%3B~PMID:9742705;gbkey=CDS;gene=lon;inference=protein motif:Prosite:PS01046;locus_tag=Cj1073c;product=ATP-dependent protease La;protein_id=CAL35190.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1006424	1007068	.	-	.	ID=id-Cj1073c;Note=HMMPfam hit to PF05362%2C Lon protease (S16) C-terminal proteolytic do%2C score 3.7e-98;gbkey=misc_feature;gene=lon;inference=protein motif:Pfam:PF05362;locus_tag=Cj1073c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1006691	1006717	.	-	.	ID=id-Cj1073c-2;Note=PS01046 ATP-dependent serine proteases%2C lon family%2Cserine active site;gbkey=misc_feature;gene=lon;inference=protein motif:Prosite:PS01046;locus_tag=Cj1073c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1007135	1007722	.	-	.	ID=id-Cj1073c-3;Note=HMMPfam hit to PF00004%2C ATPase family associated with various cellul%2C score 6.4e-49;gbkey=misc_feature;gene=lon;inference=protein motif:Pfam:PF00004;locus_tag=Cj1073c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1007684	1007707	.	-	.	ID=id-Cj1073c-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=lon;inference=protein motif:Prosite:PS00017;locus_tag=Cj1073c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1008194	1008763	.	-	.	ID=id-Cj1073c-5;Note=HMMPfam hit to PF02190%2C ATP-dependent protease La (LON) domain%2C score 1.9e-06;gbkey=misc_feature;gene=lon;inference=protein motif:Pfam:PF02190;locus_tag=Cj1073c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1008813	1009460	.	-	.	ID=gene-Cj1074c;Name=Cj1074c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1074c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1008813	1009460	.	-	0	ID=cds-CAL35191.1;Parent=gene-Cj1074c;Dbxref=EnsemblGenomes-Gn:Cj1074c,EnsemblGenomes-Tr:CAL35191,UniProtKB/TrEMBL:Q0P9I0,NCBI_GP:CAL35191.1;Name=CAL35191.1;Note=Original (2000) note: Cj1074c%2C probable lipoprotein%2C len: 215 aa%3B identical to partial TR:O69299 (EMBL:Y17166) C. jejuni (called comL)%2C 34.1%25 identity to HP1378 (called comL%2C on basis of weak match to N. gonorrhoeae comL). This gene has no detectable similarity to N.g. comL. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1074c;product=putative lipoprotein;protein_id=CAL35191.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1009407	1009439	.	-	.	ID=id-Cj1074c;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1074c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1009621	1010010	.	+	.	ID=gene-Cj1075;Name=Cj1075;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1075
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1009621	1010010	.	+	0	ID=cds-CAL35192.1;Parent=gene-Cj1075;Dbxref=EnsemblGenomes-Gn:Cj1075,EnsemblGenomes-Tr:CAL35192,GOA:Q0P9H9,InterPro:IPR003775,InterPro:IPR024046,NCBI_GP:CAL35192.1;Name=CAL35192.1;Note=Original (2000) note: Cj1075%2C unknown%2C len: 129 aa%3B simlar to hypothetical proteins e.g. TR:P96503 (EMBL:U56901) B. subtilis YVIF (143 aa)%2C fasta scores%3B opt: 213 z-score: 290.1 E(): 7.4e-09%2C 31.5%25 identity in 108 aa overlap. 41.7%25 identity to HP1377%2C and 38.8%25 identity to HP1154%3B~Updated (2006) note: Pfam domain PF02623 uncharacterized BCR%2C COG1699 identified within CDS. Conserved added to product function. Literature search identified paper giving further clues to product function. Functional classification - Conserved hypothetical proteins%3B~PMID:11895937;gbkey=CDS;inference=protein motif:Pfam:PF02623;locus_tag=Cj1075;product=conserved hypothetical protein Cj1075;protein_id=CAL35192.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1009621	1009989	.	+	.	ID=id-Cj1075;Note=HMMPfam hit to PF02623%2C Uncharacterized BCR%2CCOG1699%2C score 1.2e-36;gbkey=misc_feature;inference=protein motif:Pfam:PF02623;locus_tag=Cj1075
gi|15791399|ref|NC_002163.1|	EMBL	gene	1010010	1010741	.	+	.	ID=gene-Cj1076;Name=proC;gbkey=Gene;gene=proC;gene_biotype=protein_coding;locus_tag=Cj1076
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1010010	1010741	.	+	0	ID=cds-CAL35193.1;Parent=gene-Cj1076;Dbxref=EnsemblGenomes-Gn:Cj1076,EnsemblGenomes-Tr:CAL35193,GOA:Q0P9H8,InterPro:IPR000304,InterPro:IPR008927,InterPro:IPR016040,InterPro:IPR028939,InterPro:IPR029036,UniProtKB/TrEMBL:Q0P9H8,NCBI_GP:CAL35193.1;Name=CAL35193.1;Note=Original (2000) note: Cj1076%2C proC%2C probable pyrroline-5-carboxylate reductase%2C len: 243 aa%3B similar to many e.g. PROC_ECOLI pyrroline-5-carboxylate reductase (EC 1.5.1.2) (269 aa)%2C fasta scores%3B opt: 293 z-score: 348.5 E(): 4.1e-12%2C 26.1%25 identity in 253 aa overlap. 36.2%25 identity to HP1158. Contains PS00521 Delta 1-pyrroline-5-carboxylate reductase signature%2C and Pfam match to entry PF01089 P5CR%2C Delta 1-pyrroline-5-carboxylate reductase%3B~Updated (2006) note: Characterised in Escherichia coli with marginal identity score. Some work also carried out in Campylobacter jejuni (PMID:12949093). Appropriate motifs present. Putative removed from product function. Functional classification - Amino acid biosynthesis -Glutamate family%3B~PMID:6296787%2C PMID:16199181%2C PMID:12949093;gbkey=CDS;gene=proC;inference=protein motif:Prosite:PS00521;locus_tag=Cj1076;product=pyrroline-5-carboxylate reductase;protein_id=CAL35193.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1010019	1010705	.	+	.	ID=id-Cj1076;Note=HMMPfam hit to PF01089%2C Delta 1-pyrroline-5-carboxylate reductase%2C score 2.4e-44;gbkey=misc_feature;gene=proC;inference=protein motif:Pfam:PF01089;locus_tag=Cj1076
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1010448	1010480	.	+	.	ID=id-Cj1076-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=proC;inference=protein motif:Prosite:PS00013;locus_tag=Cj1076
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1010616	1010684	.	+	.	ID=id-Cj1076-3;Note=PS00521 Delta 1-pyrroline-5-carboxylate reductase signature;gbkey=misc_feature;gene=proC;inference=protein motif:Prosite:PS00521;locus_tag=Cj1076
gi|15791399|ref|NC_002163.1|	EMBL	gene	1010738	1011040	.	+	.	ID=gene-Cj1077;Name=ctsT;gbkey=Gene;gene=ctsT;gene_biotype=protein_coding;locus_tag=Cj1077
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1010738	1011040	.	+	0	ID=cds-CAL35194.1;Parent=gene-Cj1077;Dbxref=EnsemblGenomes-Gn:Cj1077,EnsemblGenomes-Tr:CAL35194,UniProtKB/TrEMBL:Q0P9H7,NCBI_GP:CAL35194.1;Name=CAL35194.1;Note=Original (2000) note: Cj1077%2C probable periplasmic protein%2C len: 100 aa%3B no Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Some characterisation work carried out within Campylobacter jejuni. Product unchanged%2C but gene name added. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:12949093;gbkey=CDS;gene=ctsT;locus_tag=Cj1077;product=putative periplasmic protein;protein_id=CAL35194.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1010756	1010824	.	+	.	ID=id-Cj1077;Note=1 probable transmembrane helix predicted for Cj1077 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;gene=ctsT;inference=protein motif:TMHMM:2.0;locus_tag=Cj1077
gi|15791399|ref|NC_002163.1|	EMBL	gene	1011037	1011699	.	+	.	ID=gene-Cj1078;Name=Cj1078;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1078
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1011037	1011699	.	+	0	ID=cds-CAL35195.1;Parent=gene-Cj1078;Dbxref=EnsemblGenomes-Gn:Cj1078,EnsemblGenomes-Tr:CAL35195,UniProtKB/TrEMBL:Q0P9H6,NCBI_GP:CAL35195.1;Name=CAL35195.1;Note=Original (2000) note: Cj1078%2C probable periplasmic protein%2C len: 220 aa%3B no Hp match. Contains probable N-terminal signal sequence and PS00572 Glycosyl hydrolases family 1 active site%3B~Updated (2006) note: Some research carried out within Campylobacter jejuni. Product unchanged. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:12949093;gbkey=CDS;inference=protein motif:Prosite:PS00572;locus_tag=Cj1078;product=putative periplasmic protein;protein_id=CAL35195.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1011049	1011108	.	+	.	ID=id-Cj1078;Note=1 probable transmembrane helix predicted for Cj1078 by TMHMM2.0 at aa 5-24;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1078
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1011451	1011477	.	+	.	ID=id-Cj1078-2;Note=PS00572 Glycosyl hydrolases family 1 active site;gbkey=misc_feature;inference=protein motif:Prosite:PS00572;locus_tag=Cj1078
gi|15791399|ref|NC_002163.1|	EMBL	gene	1011696	1012148	.	+	.	ID=gene-Cj1079;Name=Cj1079;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1079
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1011696	1012148	.	+	0	ID=cds-CAL35196.1;Parent=gene-Cj1079;Dbxref=EnsemblGenomes-Gn:Cj1079,EnsemblGenomes-Tr:CAL35196,UniProtKB/TrEMBL:Q0P9H5,NCBI_GP:CAL35196.1;Name=CAL35196.1;Note=Original (2000) note: Cj1079%2C probable periplasmic protein%2C len: 150 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1079;product=putative periplasmic protein;protein_id=CAL35196.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1011708	1011776	.	+	.	ID=id-Cj1079;Note=1 probable transmembrane helix predicted for Cj1079 by TMHMM2.0 at aa 5-27;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1079
gi|15791399|ref|NC_002163.1|	EMBL	gene	1012145	1012774	.	-	.	ID=gene-Cj1080c;Name=hemD;gbkey=Gene;gene=hemD;gene_biotype=protein_coding;locus_tag=Cj1080c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1012145	1012774	.	-	0	ID=cds-CAL35197.1;Parent=gene-Cj1080c;Dbxref=EnsemblGenomes-Gn:Cj1080c,EnsemblGenomes-Tr:CAL35197,GOA:Q0P9H4,InterPro:IPR003754,UniProtKB/TrEMBL:Q0P9H4,NCBI_GP:CAL35197.1;Name=CAL35197.1;Note=Original (2000) note: Cj1080c%2C unknown%2C len: 209 aa%3B similar to hypothetical proteins e.g. TR:O67647 (EMBL:AE000755) aquifex aeolicus AQ_1771 (250 aa)%2C fasta scores%3B opt: 146 z-score: 189.8 E(): 0.0029%2C 29.0%25 identity in 217 aa overlap. Some simlarity to proteins annotated as hemD%2C but no detectable similarity to verified hemD proteins. 33.3%25 identity to HP1224%3B~Updated (2006) note: Pfam domain PF02602 Uroporphyrinogen-III synthase HemD identified within CDS. Product modified to more specific function based on motif match. Specific characterisation with acceptable identity score has not been carried out yet%2C so putative kept in product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Heme%3B~PMID:7628476%2C PMID:2557837%2C PMID:7597845;gbkey=CDS;gene=hemD;inference=protein motif:Pfam:PF02602;locus_tag=Cj1080c;product=putative uroporphyrinogen-III synthase;protein_id=CAL35197.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1012166	1012774	.	-	.	ID=id-Cj1080c;Note=HMMPfam hit to PF02602%2C Uroporphyrinogen-III synthase HemD%2C score 1.6e-06;gbkey=misc_feature;gene=hemD;inference=protein motif:Pfam:PF02602;locus_tag=Cj1080c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1012752	1013384	.	-	.	ID=gene-Cj1081c;Name=thiE;gbkey=Gene;gene=thiE;gene_biotype=protein_coding;locus_tag=Cj1081c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1012752	1013384	.	-	0	ID=cds-CAL35198.1;Parent=gene-Cj1081c;Dbxref=EnsemblGenomes-Gn:Cj1081c,EnsemblGenomes-Tr:CAL35198,GOA:Q9PNL3,InterPro:IPR003733,InterPro:IPR013785,InterPro:IPR022998,NCBI_GP:CAL35198.1;Name=CAL35198.1;Note=Original (2000) note: Cj1081c%2C thiE%2C probale thiamin-phosphate pyrophosphorylase%2C len: 210 aa%3B similar to many e.g. THIE_BACSU thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) (222 aa)%2C fasta scores%3B opt: 342 z-score: 426.6 E(): 1.8e-16%2C 31.6%25 identity in 206 aa overlap. 38.9%25 identity to HP0843. Also similar to Cj1043c (29.5%25 identity in 190 aa overlap)%3B~Updated (2006) note: Pfam domain PF02581 Thiamine monophosphate synthase/TENI identified within CDS. Further support given to product function. Characterised in Bacillus subtilis with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Thiamine%3B~PMID:10350464;gbkey=CDS;gene=thiE;inference=protein motif:Pfam:PF02581;locus_tag=Cj1081c;product=thiamin-phosphate pyrophosphorylase;protein_id=CAL35198.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1012776	1013369	.	-	.	ID=id-Cj1081c;Note=HMMPfam hit to PF02581%2C Thiamine monophosphate synthase/TENI%2C score 1.5e-63;gbkey=misc_feature;gene=thiE;inference=protein motif:Pfam:PF02581;locus_tag=Cj1081c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1013374	1014186	.	-	.	ID=gene-Cj1082c;Name=thiD;gbkey=Gene;gene=thiD;gene_biotype=protein_coding;locus_tag=Cj1082c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1013374	1014186	.	-	0	ID=cds-CAL35199.1;Parent=gene-Cj1082c;Dbxref=EnsemblGenomes-Gn:Cj1082c,EnsemblGenomes-Tr:CAL35199,GOA:Q0P9H2,InterPro:IPR004399,InterPro:IPR013749,InterPro:IPR029056,UniProtKB/TrEMBL:Q0P9H2,NCBI_GP:CAL35199.1;Name=CAL35199.1;Note=Original (2000) note: Cj1082c%2C thiD%2C probable phosphomethylpyrimidine kinase%2C len: 270 aa%3B similar to many e.g. THID_ECOLI phosphomethylpyrimidine kinase (EC 2.7.4.7) (266 aa)%2C fasta scores%3B opt: 582 z-score: 703.6 E(): 6.8e-32%2C 41.0%25 identity in 261 aa overlap. 43.4%25 identity to HP0844%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Thiamine%3B~PMID:10075431;gbkey=CDS;gene=thiD;locus_tag=Cj1082c;product=phosphomethylpyrimidine kinase;protein_id=CAL35199.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1014183	1014869	.	-	.	ID=gene-Cj1083c;Name=Cj1083c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1083c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1014183	1014869	.	-	0	ID=cds-CAL35200.1;Parent=gene-Cj1083c;Dbxref=EnsemblGenomes-Gn:Cj1083c,EnsemblGenomes-Tr:CAL35200,GOA:Q0P9H1,InterPro:IPR003265,InterPro:IPR005759,InterPro:IPR011257,InterPro:IPR023170,UniProtKB/TrEMBL:Q0P9H1,NCBI_GP:CAL35200.1;Name=CAL35200.1;Note=Original (2000) note: Cj1083c%2C possible nuclease%2Clen: 228 aa%3B some similarity with predicted proteins showing similarity to endonucleases e.g. END3_RICPR endonuclease III (EC 4.2.99.18) (212 aa)%2C fasta scores%3B opt: 147 z-score: 181.9 E(): 0.0078%2C 25.7%25 identity in 152 aa overlap. 43.0%25 identity to HP0602 (annotated as endonuclease III). No detectable similarity to C. jejuni endonuclease III (Cj0595c%2C equivalent to HP0585)%3B~Updated (2006) note: Pfam domain PF00730 HhH-GPD superfamily base excision DNA repair identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet. Possible changed to putative. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Pfam:PF00730;locus_tag=Cj1083c;product=putative nuclease;protein_id=CAL35200.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1014348	1014767	.	-	.	ID=id-Cj1083c;Note=HMMPfam hit to PF00730%2C HhH-GPD superfamily base excision DNA repair%2C score 2.7e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00730;locus_tag=Cj1083c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1014866	1015627	.	-	.	ID=gene-Cj1084c;Name=Cj1084c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1084c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1014866	1015627	.	-	0	ID=cds-CAL35201.1;Parent=gene-Cj1084c;Dbxref=EnsemblGenomes-Gn:Cj1084c,EnsemblGenomes-Tr:CAL35201,InterPro:IPR008533,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9H0,NCBI_GP:CAL35201.1;Name=CAL35201.1;Note=Original (2000) note: Cj1084c%2C possible ATP/GTP-binding protein%2C len: 253 aa%3B similar to part of hypothetical proteins from Synechocystis TR:Q55502 (EMBL:D64006) (436 aa)%2C fasta scores%3B opt: 586 z-score: 675.2 E(): 2.6e-30%2C 42.4%25 identity in 236 aa overlap%2C and Aquifex aeolicus TR:O66668 (EMBL:AE000684) AQ_336 (196 aa)%2C fasta scores%3B opt: 383 z-score: 449.2 E(): 1e-17%2C40.4%25 identity in 136 aa overlap. No Hp match. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF05673 Protein of unknown function (DUF815) identified within CDS. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj1084c;product=putative ATP/GTP-binding protein;protein_id=CAL35201.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1014893	1015183	.	-	.	ID=id-Cj1084c;Note=HMMPfam hit to PF05673%2C Protein of unknown function (DUF815)%2C score 3.3e-60;gbkey=misc_feature;inference=protein motif:Pfam:PF05673;locus_tag=Cj1084c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1015421	1015444	.	-	.	ID=id-Cj1084c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1084c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1015629	1018565	.	-	.	ID=gene-Cj1085c;Name=mfd;gbkey=Gene;gene=mfd;gene_biotype=protein_coding;locus_tag=Cj1085c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1015629	1018565	.	-	0	ID=cds-CAL35202.1;Parent=gene-Cj1085c;Dbxref=EnsemblGenomes-Gn:Cj1085c,EnsemblGenomes-Tr:CAL35202,GOA:Q0P9G9,InterPro:IPR001650,InterPro:IPR003711,InterPro:IPR004576,InterPro:IPR005118,InterPro:IPR011545,InterPro:IPR014001,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9G9,NCBI_GP:CAL35202.1;Name=CAL35202.1;Note=Original (2000) note: Cj1085c%2C mfd%2C probable transcription-repair coupling factor%2C len: 978 aa%3B similar to many e.g. MFD_ECOLI transcription-repair coupling factor (1148 aa)%2C fasta scores%3B opt: 1474 z-score: 1608.2 E(): 0%2C 31.5%25 identity in 967 aa overlap. 48.3%25 identity to HP1541. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C and Pfam match to entry PF00271 helicase_C%2CHelicases conserved C-terminal domain%3B~Updated (2006) note: Pfam domains PF03461 TRCF domain%2C PF00270 DEAD/DEAH box helicase and PF02559 CarD-like/TRCF domain were all identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Appropriate motifs present. Putative not added to product funciton. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:16511235%2C PMID:12658334%2C PMID:12086674;gbkey=CDS;gene=mfd;inference=protein motif:Prosite:PS00017;locus_tag=Cj1085c;product=transcription-repair coupling factor;protein_id=CAL35202.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1015656	1015970	.	-	.	ID=id-Cj1085c;Note=HMMPfam hit to PF03461%2C TRCF domain%2C score 5.5e-31;gbkey=misc_feature;gene=mfd;inference=protein motif:Pfam:PF03461;locus_tag=Cj1085c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1016250	1016480	.	-	.	ID=id-Cj1085c-2;Note=HMMPfam hit to PF00271%2C Helicase conserved C-terminal domain%2C score 1.3e-15;gbkey=misc_feature;gene=mfd;inference=protein motif:Pfam:PF00271;locus_tag=Cj1085c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1016673	1017164	.	-	.	ID=id-Cj1085c-3;Note=HMMPfam hit to PF00270%2C DEAD/DEAH box helicase%2Cscore 1.7e-25;gbkey=misc_feature;gene=mfd;inference=protein motif:Pfam:PF00270;locus_tag=Cj1085c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1017060	1017083	.	-	.	ID=id-Cj1085c-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=mfd;inference=protein motif:Prosite:PS00017;locus_tag=Cj1085c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1017246	1017539	.	-	.	ID=id-Cj1085c-5;Note=HMMPfam hit to PF02559%2C CarD-like/TRCF domain%2Cscore 4.1e-42;gbkey=misc_feature;gene=mfd;inference=protein motif:Pfam:PF02559;locus_tag=Cj1085c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1018565	1018960	.	-	.	ID=gene-Cj1086c;Name=Cj1086c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1086c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1018565	1018960	.	-	0	ID=cds-CAL35203.1;Parent=gene-Cj1086c;Dbxref=EnsemblGenomes-Gn:Cj1086c,EnsemblGenomes-Tr:CAL35203,InterPro:IPR007607,UniProtKB/TrEMBL:Q0P9G8,NCBI_GP:CAL35203.1;Name=CAL35203.1;Note=Original (2000) note: Cj1086c%2C unknown%2C len: 131 aa%3B some similarity to hypothetical proteins e.g. TR:O51261 (EMBL:AE001134) Borrelia burgdorferi BB0245 (184 aa)%2C fasta scores%3B opt: 197 z-score: 255.1 E(): 6.6e-07%2C30.0%25 identity in 110 aa overlap. 39.8%25 identity to HP1542%3B~Updated (2006) note: Pfam domain PF04519 Protein of unknown function%2C DUF583 are identified within CDS. Prosite domain PS00430 TONB_DEPENDENT_REC_1%2CTonB-dependent receptor proteins signature 1 was also identified. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS00430;locus_tag=Cj1086c;product=conserved hypothetical protein Cj1086c;protein_id=CAL35203.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1018598	1018933	.	-	.	ID=id-Cj1086c;Note=HMMPfam hit to PF04519%2C Protein of unknown function%2C DUF583%2C score 2.2e-48;gbkey=misc_feature;inference=protein motif:Pfam:PF04519;locus_tag=Cj1086c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1018787	1018960	.	-	.	ID=id-Cj1086c-2;Note=PS00430 TonB-dependent receptor proteins signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00430;locus_tag=Cj1086c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1018897	1019799	.	-	.	ID=gene-Cj1087c;Name=Cj1087c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1087c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1018897	1019799	.	-	0	ID=cds-CAL35204.1;Parent=gene-Cj1087c;Dbxref=EnsemblGenomes-Gn:Cj1087c,EnsemblGenomes-Tr:CAL35204,InterPro:IPR011055,InterPro:IPR016047,UniProtKB/TrEMBL:Q0P9G7,NCBI_GP:CAL35204.1;Name=CAL35204.1;Note=Original (2000) note: Cj1087c%2C possible periplasmic protein%2C len: 300 aa%3B similar to TR:Q57503 (EMBL:U39068) Vibrio cholerae ToxR activated gene (302 aa)%2C fasta scores%3B opt: 575 z-score: 642.1 E(): 1.8e-28%2C 34.4%25 identity in 305 aa overlap. Also contains a segment of similarity to e.g. LSTP_STASI lysostaphin precursor (493 aa)%2C fasta scores%3B opt: 262 z-score: 294.5 E(): 4.2e-09%2C28.8%25 identity in 208 aa overlap. 36.9%25 identity to HP1543. Also similar to Cj1215 (40.6%25 identity in 133 aa overlap)%2C and Cj1235 (40.7%25 identity in 123 aa overlap). Contains possible N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF01551 Peptidase family M23 identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification - Degradation of macromolecules - Proteins%2Cpeptides and glycopeptides;gbkey=CDS;inference=protein motif:Pfam:PF01551;locus_tag=Cj1087c;product=putative peptidase;protein_id=CAL35204.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1019026	1019319	.	-	.	ID=id-Cj1087c;Note=HMMPfam hit to PF01551%2C Peptidase family M23%2C score 1.8e-47;gbkey=misc_feature;inference=protein motif:Pfam:PF01551;locus_tag=Cj1087c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1019659	1019718	.	-	.	ID=id-Cj1087c-2;Note=1 probable transmembrane helix predicted for Cj1087c by TMHMM2.0 at aa 28-47;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1087c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1019786	1020970	.	-	.	ID=gene-Cj1088c;Name=folC;gbkey=Gene;gene=folC;gene_biotype=protein_coding;locus_tag=Cj1088c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1019786	1020970	.	-	0	ID=cds-CAL35205.1;Parent=gene-Cj1088c;Dbxref=EnsemblGenomes-Gn:Cj1088c,EnsemblGenomes-Tr:CAL35205,GOA:Q0P9G6,InterPro:IPR001645,InterPro:IPR004101,InterPro:IPR013221,UniProtKB/TrEMBL:Q0P9G6,NCBI_GP:CAL35205.1;Name=CAL35205.1;Note=Original (2000) note: Cj1088c%2C folC%2C probable folylpolyglutamate synthase/dihydrofolate synthase%2C len: 394 aa%3B similar to many e.g. FOLC_ECOLI folylpolyglutamate synthase (EC 6.3.2.17) / dihydrofolate synthase (EC 6.3.2.12) (422 aa)%2C fasta sores%3B opt: 315 z-score: 360.4 E(): 8.9e-13%2C 30.7%25 identity in 313 aa overlap. 42.7%25 identity to HP1545. Contains Pfam match to entry PF01225 FPGS%2C Folylpolyglutamate synthase%3B~Updated (2006) note: Characterised in Escherichia coli with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Heme%3B~PMID:3040739%2C PMID:1939056;gbkey=CDS;gene=folC;inference=protein motif:Pfam:PF01225;locus_tag=Cj1088c;product=folylpolyglutamate synthase/dihydrofolate synthase;protein_id=CAL35205.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1020936	1022333	.	-	.	ID=gene-Cj1089c;Name=Cj1089c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1089c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1020936	1022333	.	-	0	ID=cds-CAL35206.1;Parent=gene-Cj1089c;Dbxref=EnsemblGenomes-Gn:Cj1089c,EnsemblGenomes-Tr:CAL35206,InterPro:IPR029787,UniProtKB/TrEMBL:Q0P9G5,NCBI_GP:CAL35206.1;Name=CAL35206.1;Note=Original (2000) note: Cj1089c%2C unknown%2C len: 65 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj1089c;product=hypothetical protein Cj1089c;protein_id=CAL35206.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1022317	1022829	.	-	.	ID=gene-Cj1090c;Name=Cj1090c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1090c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1022317	1022829	.	-	0	ID=cds-CAL35207.1;Parent=gene-Cj1090c;Dbxref=EnsemblGenomes-Gn:Cj1090c,EnsemblGenomes-Tr:CAL35207,GOA:Q0P9G4,InterPro:IPR007485,UniProtKB/TrEMBL:Q0P9G4,NCBI_GP:CAL35207.1;Name=CAL35207.1;Note=Original (2000) note: Cj1090c%2C probable lipoprotein%2C len: 170 aa%3B 26.5%25 identity to HP1546. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1090c;product=putative lipoprotein;protein_id=CAL35207.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1022782	1022814	.	-	.	ID=id-Cj1090c;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1090c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1022826	1025255	.	-	.	ID=gene-Cj1091c;Name=leuS;gbkey=Gene;gene=leuS;gene_biotype=protein_coding;locus_tag=Cj1091c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1022826	1025255	.	-	0	ID=cds-CAL35208.1;Parent=gene-Cj1091c;Dbxref=EnsemblGenomes-Gn:Cj1091c,EnsemblGenomes-Tr:CAL35208,GOA:Q9PNK3,InterPro:IPR001412,InterPro:IPR002300,InterPro:IPR002302,InterPro:IPR009008,InterPro:IPR009080,InterPro:IPR014729,InterPro:IPR025709,NCBI_GP:CAL35208.1;Name=CAL35208.1;Note=Original (2000) note: Cj1091c%2C leuS%2C probable leucyl-tRNA synthetase%2C len: 809 aa%3B similar to many e.g. SYL_ECOLI leucyl-tRNA synthetase (EC 6.1.1.4) (860 aa)%2Cfasta scores%3B opt: 1941 z-score: 2210.5 E(): 0%2C 44.1%25 identity in 869 aa overlap. 62.7%25 identity to HP1547. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2CPS00178 Aminoacyl-transfer RNA synthetases class-I signature%2C and Pfam match to entry PF00133 tRNA-synt_1%2CtRNA synthetases class I%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:3320963%2C PMID:10811626. PMID:12215774%2CPMID:10024478;gbkey=CDS;gene=leuS;inference=protein motif:Prosite:PS00178;locus_tag=Cj1091c;product=leucyl-tRNA synthetase;protein_id=CAL35208.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1022880	1022903	.	-	.	ID=id-Cj1091c;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=leuS;inference=protein motif:Prosite:PS00017;locus_tag=Cj1091c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1023192	1023224	.	-	.	ID=id-Cj1091c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=leuS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1091c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1023399	1025225	.	-	.	ID=id-Cj1091c-3;Note=HMMPfam hit to PF00133%2C tRNA synthetases class I (I%2C L%2C M and V)%2C score 7.4e-139;gbkey=misc_feature;gene=leuS;inference=protein motif:Pfam:PF00133;locus_tag=Cj1091c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1025103	1025138	.	-	.	ID=id-Cj1091c-4;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=leuS;inference=protein motif:Prosite:PS00178;locus_tag=Cj1091c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1025265	1026236	.	-	.	ID=gene-Cj1092c;Name=secF;gbkey=Gene;gene=secF;gene_biotype=protein_coding;locus_tag=Cj1092c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1025265	1026236	.	-	0	ID=cds-CAL35209.1;Parent=gene-Cj1092c;Dbxref=EnsemblGenomes-Gn:Cj1092c,EnsemblGenomes-Tr:CAL35209,GOA:Q0P9G2,InterPro:IPR005665,InterPro:IPR022645,InterPro:IPR022646,InterPro:IPR022813,UniProtKB/TrEMBL:Q0P9G2,NCBI_GP:CAL35209.1;Name=CAL35209.1;Note=Original (2000) note: Cj1092c%2C secF%2C probable protein-export membrane protein%2C len: 323 aa%3B similar to many e.g. SECF_ECOLI protein-export membrane protein SECF (323 aa)%2C fasta scores%3B opt: 745 z-score: 850.2 E(): 0%2C36.6%25 identity in 306 aa overlap. 43.0%25 identity to HP1549%3B~Updated (2006) note: Pfam domains PF07549 SecD/SecF GG Motif and PF02355 Protein export membrane protein were identified within CDS. Also%2C four probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised in Escherichia coli and Bacillus subtilis with acceptable identity score%2C so putative not added to product function. Functional classification - Protein and peptide secretion%3B~PMID:1633199%2C PMID:2202721%2C PMID:9694879%2CPMID:8112309;gbkey=CDS;gene=secF;inference=protein motif:TMHMM:2.0;locus_tag=Cj1092c;product=protein-export membrane protein;protein_id=CAL35209.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1025367	1025435	.	-	.	ID=id-Cj1092c;Note=4 probable transmembrane helices predicted for Cj1092c by TMHMM2.0 at aa 13-35%2C 137-154%2C 236-258 and 268-290;gbkey=misc_feature;gene=secF;inference=protein motif:TMHMM:2.0;locus_tag=Cj1092c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1025463	1025531	.	-	.	ID=id-Cj1092c;Note=4 probable transmembrane helices predicted for Cj1092c by TMHMM2.0 at aa 13-35%2C 137-154%2C 236-258 and 268-290;gbkey=misc_feature;gene=secF;inference=protein motif:TMHMM:2.0;locus_tag=Cj1092c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1025775	1025828	.	-	.	ID=id-Cj1092c;Note=4 probable transmembrane helices predicted for Cj1092c by TMHMM2.0 at aa 13-35%2C 137-154%2C 236-258 and 268-290;gbkey=misc_feature;gene=secF;inference=protein motif:TMHMM:2.0;locus_tag=Cj1092c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1026132	1026200	.	-	.	ID=id-Cj1092c;Note=4 probable transmembrane helices predicted for Cj1092c by TMHMM2.0 at aa 13-35%2C 137-154%2C 236-258 and 268-290;gbkey=misc_feature;gene=secF;inference=protein motif:TMHMM:2.0;locus_tag=Cj1092c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1025358	1025921	.	-	.	ID=id-Cj1092c-2;Note=HMMPfam hit to PF02355%2C Protein export membrane protein%2C score 9.9e-82;gbkey=misc_feature;gene=secF;inference=protein motif:Pfam:PF02355;locus_tag=Cj1092c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1026054	1026140	.	-	.	ID=id-Cj1092c-3;Note=HMMPfam hit to PF07549%2C SecD/SecF GG Motif%2C score 0.00022;gbkey=misc_feature;gene=secF;inference=protein motif:Pfam:PF07549;locus_tag=Cj1092c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1026236	1027816	.	-	.	ID=gene-Cj1093c;Name=secD;gbkey=Gene;gene=secD;gene_biotype=protein_coding;locus_tag=Cj1093c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1026236	1027816	.	-	0	ID=cds-CAL35210.1;Parent=gene-Cj1093c;Dbxref=EnsemblGenomes-Gn:Cj1093c,EnsemblGenomes-Tr:CAL35210,GOA:Q0P9G1,InterPro:IPR001036,InterPro:IPR005791,InterPro:IPR022645,InterPro:IPR022646,InterPro:IPR022813,UniProtKB/TrEMBL:Q0P9G1,NCBI_GP:CAL35210.1;Name=CAL35210.1;Note=Original (2000) note: Cj1093c%2C secD%2C probable protein-export membrane protein%2C len: 526 aa%3B similar to many e.g. SECD_ECOLI protein-export membrane protein SECD (615 aa)%2C fasta scores%3B opt: 655 z-score: 707.3 E(): 4.2e-32%2C 33.3%25 identity in 523 aa overlap. 54.3%25 identity to HP1550%3B~Updated (2006) note: Pfam domains PF07549 SecD/SecF GG Motif and PF02355 Protein export membrane protein were identified within CDS. Also%2C four probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised in Escherichia coli and Bacillus subtilis with marignal identity score. Putative not added to product function. Functional classification -Protein and peptide secretion%3B~PMID:1633199%2C PMID:2202721%2C PMID:9694879%2CPMID:8112309;gbkey=CDS;gene=secD;inference=protein motif:TMHMM:2.0;locus_tag=Cj1093c;product=protein-export membrane protein;protein_id=CAL35210.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1026305	1026373	.	-	.	ID=id-Cj1093c;Note=4 probable transmembrane helices predicted for Cj1093c by TMHMM2.0 at aa 7-29%2C 359-381%2C 388-410 and 482-504;gbkey=misc_feature;gene=secD;inference=protein motif:TMHMM:2.0;locus_tag=Cj1093c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1026587	1026655	.	-	.	ID=id-Cj1093c;Note=4 probable transmembrane helices predicted for Cj1093c by TMHMM2.0 at aa 7-29%2C 359-381%2C 388-410 and 482-504;gbkey=misc_feature;gene=secD;inference=protein motif:TMHMM:2.0;locus_tag=Cj1093c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1026674	1026742	.	-	.	ID=id-Cj1093c;Note=4 probable transmembrane helices predicted for Cj1093c by TMHMM2.0 at aa 7-29%2C 359-381%2C 388-410 and 482-504;gbkey=misc_feature;gene=secD;inference=protein motif:TMHMM:2.0;locus_tag=Cj1093c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1027730	1027798	.	-	.	ID=id-Cj1093c;Note=4 probable transmembrane helices predicted for Cj1093c by TMHMM2.0 at aa 7-29%2C 359-381%2C 388-410 and 482-504;gbkey=misc_feature;gene=secD;inference=protein motif:TMHMM:2.0;locus_tag=Cj1093c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1026287	1026832	.	-	.	ID=id-Cj1093c-2;Note=HMMPfam hit to PF02355%2C Protein export membrane protein%2C score 3.4e-06;gbkey=misc_feature;gene=secD;inference=protein motif:Pfam:PF02355;locus_tag=Cj1093c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1027640	1027735	.	-	.	ID=id-Cj1093c-3;Note=HMMPfam hit to PF07549%2C SecD/SecF GG Motif%2C score 0.00025;gbkey=misc_feature;gene=secD;inference=protein motif:Pfam:PF07549;locus_tag=Cj1093c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1027809	1028081	.	-	.	ID=gene-Cj1094c;Name=Cj1094c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1094c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1027809	1028081	.	-	0	ID=cds-CAL35211.1;Parent=gene-Cj1094c;Dbxref=EnsemblGenomes-Gn:Cj1094c,EnsemblGenomes-Tr:CAL35211,GOA:Q0P9G0,InterPro:IPR003849,UniProtKB/TrEMBL:Q0P9G0,NCBI_GP:CAL35211.1;Name=CAL35211.1;Note=Original (2000) note: Cj1094c%2C probable membrane protein%2C len: 90 aa%3B similar to hypothetical proteins e.g. YAJC_ECOLI (110 aa)%2C fasta scores%3B opt: 250 z-score: 333.1 E(): 3e-11%2C 44.7%25 identity in 85 aa overlap. 64.3%25 identity to HP1551probable membrane protein%2C len: 90 aa%3B similar to hypothetical proteins e.g. YAJC_ECOLI (110 aa)%2Cfasta scores%3B opt: 250 z-score: 333.1 E(): 3e-11%2C 44.7%25 identity in 85 aa overlap. 64.3%25 identity to HP1551%3B~Updated (2006) note: Pfam domain PF02699 Preprotein translocase subunit identified within CDS. Also%2C one probable transmembrane helix predicted by TMHMM2.0. Product modified to more specific family member based on motif match. Specific characterisation has not been carried out%2C so putative kept within product function. Functional classification - Protein and peptide secretion;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1094c;product=putative preprotein translocase protein;protein_id=CAL35211.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1027818	1028069	.	-	.	ID=id-Cj1094c;Note=HMMPfam hit to PF02699%2C Preprotein translocase subunit%2C score 8.3e-40;gbkey=misc_feature;inference=protein motif:Pfam:PF02699;locus_tag=Cj1094c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1028010	1028069	.	-	.	ID=id-Cj1094c-2;Note=1 probable transmembrane helix predicted for Cj1094c by TMHMM2.0 at aa 5-24;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1094c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1028054	1029379	.	+	.	ID=gene-Cj1095;Name=lnt;gbkey=Gene;gene=lnt;gene_biotype=protein_coding;locus_tag=Cj1095
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1028054	1029379	.	+	0	ID=cds-CAL35212.1;Parent=gene-Cj1095;Dbxref=EnsemblGenomes-Gn:Cj1095,EnsemblGenomes-Tr:CAL35212,GOA:Q9PNJ9,InterPro:IPR003010,InterPro:IPR004563,NCBI_GP:CAL35212.1;Name=CAL35212.1;Note=Updated (2006) note: Seven probable transmembrane helices predicted by TMHMM2.0. Characterised in Escherichia coli with unnaceptable identity score. Product function modified to more specific family member. Putative kept within product function%3B~Original (2000) note: Cj1095%2C probable integral membrane protein%2C len: 441 aa%3B very weak similarity to e.g. LNT_ECOLI apolipoprotein N-acyltransferase (512 aa)%2Cfasta scores%3B opt: 187 z-score: 213.6 E(): 0.00013%2C 22.0%25 identity in 405 aa overlap. 32.4%25 identity to HP0180%3B~PMID:15513925%2C PMID:8344936%2C PMID:2032623;gbkey=CDS;gene=lnt;inference=protein motif:TMHMM:2.0;locus_tag=Cj1095;product=putative apolipoprotein N-acyltransferase. Functional classification-Membranes%2C lipoproteins and porins;protein_id=CAL35212.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1028120	1028188	.	+	.	ID=id-Cj1095;Note=7 probable transmembrane helices predicted for Cj1095 by TMHMM2.0 at aa 23-45%2C 49-68%2C 75-97%2C 101-123%2C128-145%2C 155-177 and 184-201;gbkey=misc_feature;gene=lnt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1095;part=1/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1028198	1028257	.	+	.	ID=id-Cj1095;Note=7 probable transmembrane helices predicted for Cj1095 by TMHMM2.0 at aa 23-45%2C 49-68%2C 75-97%2C 101-123%2C128-145%2C 155-177 and 184-201;gbkey=misc_feature;gene=lnt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1095;part=2/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1028276	1028344	.	+	.	ID=id-Cj1095;Note=7 probable transmembrane helices predicted for Cj1095 by TMHMM2.0 at aa 23-45%2C 49-68%2C 75-97%2C 101-123%2C128-145%2C 155-177 and 184-201;gbkey=misc_feature;gene=lnt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1095;part=3/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1028354	1028422	.	+	.	ID=id-Cj1095;Note=7 probable transmembrane helices predicted for Cj1095 by TMHMM2.0 at aa 23-45%2C 49-68%2C 75-97%2C 101-123%2C128-145%2C 155-177 and 184-201;gbkey=misc_feature;gene=lnt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1095;part=4/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1028435	1028488	.	+	.	ID=id-Cj1095;Note=7 probable transmembrane helices predicted for Cj1095 by TMHMM2.0 at aa 23-45%2C 49-68%2C 75-97%2C 101-123%2C128-145%2C 155-177 and 184-201;gbkey=misc_feature;gene=lnt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1095;part=5/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1028516	1028584	.	+	.	ID=id-Cj1095;Note=7 probable transmembrane helices predicted for Cj1095 by TMHMM2.0 at aa 23-45%2C 49-68%2C 75-97%2C 101-123%2C128-145%2C 155-177 and 184-201;gbkey=misc_feature;gene=lnt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1095;part=6/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1028603	1028656	.	+	.	ID=id-Cj1095;Note=7 probable transmembrane helices predicted for Cj1095 by TMHMM2.0 at aa 23-45%2C 49-68%2C 75-97%2C 101-123%2C128-145%2C 155-177 and 184-201;gbkey=misc_feature;gene=lnt;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1095;part=7/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1029616	1030812	.	-	.	ID=gene-Cj1096c;Name=metK;gbkey=Gene;gene=metK;gene_biotype=protein_coding;locus_tag=Cj1096c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1029616	1030812	.	-	0	ID=cds-CAL35213.1;Parent=gene-Cj1096c;Dbxref=EnsemblGenomes-Gn:Cj1096c,EnsemblGenomes-Tr:CAL35213,GOA:Q0P9F8,InterPro:IPR002133,InterPro:IPR022628,InterPro:IPR022629,InterPro:IPR022630,InterPro:IPR022631,InterPro:IPR022636,UniProtKB/TrEMBL:Q0P9F8,NCBI_GP:CAL35213.1;Name=CAL35213.1;Note=Original (2000) note: Cj1096c%2C metK%2C probable S-adenosylmethionine synthetase%2C len: 398 aa%3B highly similar to many e.g. METK_BACSU S-adenosylmethionine synthetase) (EC 2.5.1.6) (400 aa)%2C fasta scores%3B opt: 902 z-score: 1037.9 E(): 0%2C 41.6%25 identity in 411 aa overlap. 40.4%25 identity to HP0197. Contains Pfam match to entry PF00438 S-AdoMet_synt%2C S-adenosylmethionine synthetase%3B~Updated (2006) note: Characterised in Escherichia coli and Bacillus subtilis with acceptable identity scores%2C so putative not added to product function. Functional classification - Central intermediary metabolism - General%3B~PMID:6094561%2C PMID:8755891;gbkey=CDS;gene=metK;inference=protein motif:Pfam:PF00438;locus_tag=Cj1096c;product=S-adenosylmethionine synthetase;protein_id=CAL35213.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1029652	1030083	.	-	.	ID=id-Cj1096c;Note=HMMPfam hit to PF02773%2C S-adenosylmethionine synthetase%2C C-te%2C score 9e-51;gbkey=misc_feature;gene=metK;inference=protein motif:Pfam:PF02773;locus_tag=Cj1096c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1030087	1030461	.	-	.	ID=id-Cj1096c-2;Note=HMMPfam hit to PF02772%2C S-adenosylmethionine synthetase%2C cent%2C score 1e-22;gbkey=misc_feature;gene=metK;inference=protein motif:Pfam:PF02772;locus_tag=Cj1096c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1030420	1030452	.	-	.	ID=id-Cj1096c-3;Note=PS00376 S-adenosylmethionine synthetase signature 1;gbkey=misc_feature;gene=metK;inference=protein motif:Prosite:PS00376;locus_tag=Cj1096c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1030489	1030812	.	-	.	ID=id-Cj1096c-4;Note=HMMPfam hit to PF00438%2C S-adenosylmethionine synthetase%2C N-te%2C score 7.3e-25;gbkey=misc_feature;gene=metK;inference=protein motif:Pfam:PF00438;locus_tag=Cj1096c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1030953	1032176	.	+	.	ID=gene-Cj1097;Name=Cj1097;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1097
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1030953	1032176	.	+	0	ID=cds-CAL35214.1;Parent=gene-Cj1097;Dbxref=EnsemblGenomes-Gn:Cj1097,EnsemblGenomes-Tr:CAL35214,GOA:Q0P9F7,InterPro:IPR001991,InterPro:IPR023025,NCBI_GP:CAL35214.1;Name=CAL35214.1;Note=Original (2000) note: Cj1097%2C probable transmembrane transport protein%2C len: 407 aa%3B similar to members of the sodium:dicarboxylate symporter family e.g. YGJU_ECOLI (414 aa)%2C fasta scores%3B opt: 1359 z-score: 1593.2 E(): 0%2C 52.9%25 identity in 397 aa overlap. No Hp match. Contains Pfam match to entry PF00375 SDF%2CSodium:dicarboxylate symporter family. Also similar to Cj1192 (26.8%25 identity in 403 aa overlap)%3B~Updated (2006) note: Nine probable transmembrane helices predicted for by TMHMM2.0. Product function modified to more specific family member based on motif match. Specific characterisation has not been carried out yet%2C so putative kept in product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1097;product=putative transmembrane transport protein;protein_id=CAL35214.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1030986	1031045	.	+	.	ID=id-Cj1097;Note=9 probable transmembrane helices predicted for Cj1097 by TMHMM2.0 at aa 12-31%2C 41-63%2C 83-105%2C 139-161%2C182-201%2C 216-238%2C 245-267%2C 287-309 and 322-344;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1097;part=1/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1031073	1031141	.	+	.	ID=id-Cj1097;Note=9 probable transmembrane helices predicted for Cj1097 by TMHMM2.0 at aa 12-31%2C 41-63%2C 83-105%2C 139-161%2C182-201%2C 216-238%2C 245-267%2C 287-309 and 322-344;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1097;part=2/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1031199	1031267	.	+	.	ID=id-Cj1097;Note=9 probable transmembrane helices predicted for Cj1097 by TMHMM2.0 at aa 12-31%2C 41-63%2C 83-105%2C 139-161%2C182-201%2C 216-238%2C 245-267%2C 287-309 and 322-344;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1097;part=3/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1031367	1031435	.	+	.	ID=id-Cj1097;Note=9 probable transmembrane helices predicted for Cj1097 by TMHMM2.0 at aa 12-31%2C 41-63%2C 83-105%2C 139-161%2C182-201%2C 216-238%2C 245-267%2C 287-309 and 322-344;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1097;part=4/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1031496	1031555	.	+	.	ID=id-Cj1097;Note=9 probable transmembrane helices predicted for Cj1097 by TMHMM2.0 at aa 12-31%2C 41-63%2C 83-105%2C 139-161%2C182-201%2C 216-238%2C 245-267%2C 287-309 and 322-344;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1097;part=5/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1031598	1031666	.	+	.	ID=id-Cj1097;Note=9 probable transmembrane helices predicted for Cj1097 by TMHMM2.0 at aa 12-31%2C 41-63%2C 83-105%2C 139-161%2C182-201%2C 216-238%2C 245-267%2C 287-309 and 322-344;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1097;part=6/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1031685	1031753	.	+	.	ID=id-Cj1097;Note=9 probable transmembrane helices predicted for Cj1097 by TMHMM2.0 at aa 12-31%2C 41-63%2C 83-105%2C 139-161%2C182-201%2C 216-238%2C 245-267%2C 287-309 and 322-344;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1097;part=7/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1031811	1031879	.	+	.	ID=id-Cj1097;Note=9 probable transmembrane helices predicted for Cj1097 by TMHMM2.0 at aa 12-31%2C 41-63%2C 83-105%2C 139-161%2C182-201%2C 216-238%2C 245-267%2C 287-309 and 322-344;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1097;part=8/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1031916	1031984	.	+	.	ID=id-Cj1097;Note=9 probable transmembrane helices predicted for Cj1097 by TMHMM2.0 at aa 12-31%2C 41-63%2C 83-105%2C 139-161%2C182-201%2C 216-238%2C 245-267%2C 287-309 and 322-344;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1097;part=9/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1030992	1032140	.	+	.	ID=id-Cj1097-2;Note=HMMPfam hit to PF00375%2C Sodium:dicarboxylate symporter family%2C score 4e-101;gbkey=misc_feature;inference=protein motif:Pfam:PF00375;locus_tag=Cj1097
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1031205	1031237	.	+	.	ID=id-Cj1097-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1097
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1031931	1031963	.	+	.	ID=id-Cj1097-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1097
gi|15791399|ref|NC_002163.1|	EMBL	gene	1032186	1033073	.	+	.	ID=gene-Cj1098;Name=pyrB;gbkey=Gene;gene=pyrB;gene_biotype=protein_coding;locus_tag=Cj1098
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1032186	1033073	.	+	0	ID=cds-CAL35215.1;Parent=gene-Cj1098;Dbxref=EnsemblGenomes-Gn:Cj1098,EnsemblGenomes-Tr:CAL35215,GOA:Q9PNJ6,InterPro:IPR002082,InterPro:IPR006130,InterPro:IPR006131,InterPro:IPR006132,NCBI_GP:CAL35215.1;Name=CAL35215.1;Note=Original (2000) note: Cj1098%2C pyrB%2C probable aspartate carbamoyltransferase%2C len: 295 aa%3B similar to many e.g. PYRB_BACSU aspartate carbamoyltransferase (EC 2.1.3.2) (304 aa)%2C fasta scores%3B opt: 664 z-score: 820.0 E(): 0%2C 38.5%25 identity in 296 aa overlap. 52.5%25 identity to HP1084. Also similar to Cj0994c (argF%2C 27.1%25 identity in 314 aa overlap)%3B~Updated (2006) note: Pfam domains PF02729 Aspartate/ornithine carbamoyltransferase%2C cacarbamoyl-P binding domain and PF00185 Aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain were identified within CDS. Also%2C PS00097 CARBAMOYLTRANSFERASE%2CAspartate and ornithine carbamoyltransferases signature was identified within CDS. Further support given to product function. Characterised in Bacillus subtilis and Escherichia coli with acceptable identity scores%2C so putative not added to product function. Functional classification - Pyrimidine ribonucleotide biosynthesis%3B~PMID:3015959%2C PMID:10900135;gbkey=CDS;gene=pyrB;inference=protein motif:Prosite:PS00097;locus_tag=Cj1098;product=aspartate carbamoyltransferase;protein_id=CAL35215.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1032189	1032611	.	+	.	ID=id-Cj1098;Note=HMMPfam hit to PF02729%2C Aspartate/ornithine carbamoyltransferase%2C ca%2C score 2.7e-47;gbkey=misc_feature;gene=pyrB;inference=protein motif:Pfam:PF02729;locus_tag=Cj1098
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1032312	1032335	.	+	.	ID=id-Cj1098-2;Note=PS00097 Aspartate and ornithine carbamoyltransferases signature;gbkey=misc_feature;gene=pyrB;inference=protein motif:Prosite:PS00097;locus_tag=Cj1098
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1032621	1033055	.	+	.	ID=id-Cj1098-3;Note=HMMPfam hit to PF00185%2C Aspartate/ornithine carbamoyltransferase%2C As%2C score 8.3e-14;gbkey=misc_feature;gene=pyrB;inference=protein motif:Pfam:PF00185;locus_tag=Cj1098
gi|15791399|ref|NC_002163.1|	EMBL	gene	1033077	1034798	.	+	.	ID=gene-Cj1099;Name=Cj1099;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1099
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1033077	1034798	.	+	0	ID=cds-CAL35216.1;Parent=gene-Cj1099;Dbxref=EnsemblGenomes-Gn:Cj1099,EnsemblGenomes-Tr:CAL35216,GOA:Q0P9F5,InterPro:IPR001567,InterPro:IPR013647,UniProtKB/TrEMBL:Q0P9F5,NCBI_GP:CAL35216.1;Name=CAL35216.1;Note=Original (2000) note: Cj1099%2C probable peptidase%2Clen: 573 aa%3B similar to many members of the peptidase family M3 (zinc metalloprotease) e.g. PEPF_LACLA oligoendopeptidase F (601 aa)%2C fasta scores%3B opt: 603 z-score: 673.0 E(): 3.4e-30%2C 25.9%25 identity in 595 aa overlap. 53.5%25 identity to HP0470. Contains PS00142 Neutral zinc metallopeptidases%2C zinc-binding region signature%3B~Updated (2006) note: Pfam domain PF01432 Peptidase family M3 identified within CDS. Further support given to product function. Specific characterisation has not been carried out yet. Putative not added to product function. Functional classification - Degradation of macromolecules - Proteins%2C peptides and glycopeptides;gbkey=CDS;inference=protein motif:Prosite:PS00142;locus_tag=Cj1099;product=peptidase;protein_id=CAL35216.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1033617	1034753	.	+	.	ID=id-Cj1099;Note=HMMPfam hit to PF01432%2C Peptidase family M3%2C score 1.3e-73;gbkey=misc_feature;inference=protein motif:Pfam:PF01432;locus_tag=Cj1099
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1034163	1034192	.	+	.	ID=id-Cj1099-2;Note=PS00142 Neutral zinc metallopeptidases%2Czinc-binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00142;locus_tag=Cj1099
gi|15791399|ref|NC_002163.1|	EMBL	gene	1034792	1035229	.	+	.	ID=gene-Cj1100;Name=Cj1100;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1100
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1034792	1035229	.	+	0	ID=cds-CAL35217.1;Parent=gene-Cj1100;Dbxref=EnsemblGenomes-Gn:Cj1100,EnsemblGenomes-Tr:CAL35217,UniProtKB/TrEMBL:Q0P9F4,NCBI_GP:CAL35217.1;Name=CAL35217.1;Note=Original (2000) note: Cj1100%2C unknown%2C len: 145 aa%3B 34.7%25 identity to HP0469. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1100;product=hypothteical protein Cj1100;protein_id=CAL35217.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1035226	1037301	.	+	.	ID=gene-Cj1101;Name=Cj1101;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1101
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1035226	1037301	.	+	0	ID=cds-CAL35218.1;Parent=gene-Cj1101;Dbxref=EnsemblGenomes-Gn:Cj1101,EnsemblGenomes-Tr:CAL35218,GOA:Q0P9F3,InterPro:IPR000212,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9F3,NCBI_GP:CAL35218.1;Name=CAL35218.1;Note=Original (2000) note: Cj1101%2C probable ATP-dependent DNA helicase%2C len: 691 aa%3B similar to many e.g REP_ECOLI ATP-dependent DNA helicase REP (EC 3.6.1.-) (673 aa)%2C fasta scores%3B opt: 977 z-score: 1067.3 E(): 0%2C36.9%25 identity in 640 aa overlap%2C and UVRD_ECOLI DNA helicase II (EC 3.6.1.-) (720 aa)%2C fasta scores%3B opt: 1129 z-score: 1232.6 E(): 0%2C 35.2%25 identity in 714 aa overlap. 43.7%25 identity to HP1478. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C and Pfam match to entry PF00580 UvrD-helicase%2C UvrD/REP helicase%3B~Updated (2006) note: Similar to more than one helicase with acceptable identity scores. Putative not added to product function. Functional classification - DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:9288744%2C PMID:8419285;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj1101;product=ATP-dependent DNA helicase;protein_id=CAL35218.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1035244	1036707	.	+	.	ID=id-Cj1101;Note=HMMPfam hit to PF00580%2C UvrD/REP helicase%2C score 2.6e-149;gbkey=misc_feature;inference=protein motif:Pfam:PF00580;locus_tag=Cj1101
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1035301	1035324	.	+	.	ID=id-Cj1101-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1101
gi|15791399|ref|NC_002163.1|	EMBL	gene	1037298	1038116	.	+	.	ID=gene-Cj1102;Name=truB;gbkey=Gene;gene=truB;gene_biotype=protein_coding;locus_tag=Cj1102
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1037298	1038116	.	+	0	ID=cds-CAL35219.1;Parent=gene-Cj1102;Dbxref=EnsemblGenomes-Gn:Cj1102,EnsemblGenomes-Tr:CAL35219,GOA:Q9PNJ2,InterPro:IPR002501,InterPro:IPR014780,InterPro:IPR020103,NCBI_GP:CAL35219.1;Name=CAL35219.1;Note=Original (2000) note: Cj1102%2C truB%2C probable tRNA pseudouridine synthase B%2C len: 272 aa%3B similar to e.g. TRUB_ECOLI tRNA pseudouridine synthase B (EC 4.2.1.70) (314 aa)%2C fasta scores%3B opt: 347 z-score: 405.3 E(): 2.8e-15%2C 30.8%25 identity in 211 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01509%2C TruB family pseudouridylate synthase (N terminal domain) was identified within CDS. Further support given to product function. Characterised in Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:14566049%2C PMID:11779468;gbkey=CDS;gene=truB;inference=protein motif:Pfam:PF01509;locus_tag=Cj1102;product=tRNA pseudouridine synthase B;protein_id=CAL35219.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1037364	1037807	.	+	.	ID=id-Cj1102;Note=HMMPfam hit to PF01509%2C TruB family pseudouridylate synthase (N term%2C score 1.1e-25;gbkey=misc_feature;gene=truB;inference=protein motif:Pfam:PF01509;locus_tag=Cj1102
gi|15791399|ref|NC_002163.1|	EMBL	gene	1038110	1038337	.	+	.	ID=gene-Cj1103;Name=csrA;gbkey=Gene;gene=csrA;gene_biotype=protein_coding;locus_tag=Cj1103
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1038110	1038337	.	+	0	ID=cds-CAL35220.1;Parent=gene-Cj1103;Dbxref=EnsemblGenomes-Gn:Cj1103,EnsemblGenomes-Tr:CAL35220,GOA:Q0P9F1,InterPro:IPR003751,UniProtKB/TrEMBL:Q0P9F1,NCBI_GP:CAL35220.1;Name=CAL35220.1;Note=Original (2000) note: Cj1103%2C csrA%2C probable carbon storage regulator homolog%2C len: 75 aa%3B similar to many e.g. CSRA_ECOLI carbon storage regulator (61 aa)%2C fasta scores%3B opt: 133 z-score: 202.6 E(): 0.00055%2C 33.3%25 identity in 54 aa overlap. 46.7%25 identity to HP1442%3B~Updated (2006) note: Pfam domain PF02599 Global regulator protein family was identified within CDS. Further support given to product function. Characterised in Escherichia coli with marginal identity score. Homolog designation kept in product function. Functional classification - Broad regulatory functions%3B~PMID:9211896%2C PMID:8393005;gbkey=CDS;gene=csrA;inference=protein motif:Pfam:PF02599;locus_tag=Cj1103;product=carbon storage regulator homolog;protein_id=CAL35220.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1038110	1038298	.	+	.	ID=id-Cj1103;Note=HMMPfam hit to PF02599%2C Global regulator protein family%2C score 1.1e-31;gbkey=misc_feature;gene=csrA;inference=protein motif:Pfam:PF02599;locus_tag=Cj1103
gi|15791399|ref|NC_002163.1|	EMBL	gene	1038334	1039101	.	+	.	ID=gene-Cj1104;Name=ispE;gbkey=Gene;gene=ispE;gene_biotype=protein_coding;locus_tag=Cj1104
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1038334	1039101	.	+	0	ID=cds-CAL35221.1;Parent=gene-Cj1104;Dbxref=EnsemblGenomes-Gn:Cj1104,EnsemblGenomes-Tr:CAL35221,GOA:Q9PNJ0,InterPro:IPR004424,InterPro:IPR006204,InterPro:IPR013750,InterPro:IPR014721,InterPro:IPR020568,NCBI_GP:CAL35221.1;Name=CAL35221.1;Note=Original (2000) note: Cj1104%2C unknown%2C len: 255 aa%3B similar to hypothetical proteins e.g. YABH_BACSU (289 aa)%2Cfasta scores%3B opt: 263 z-score: 317.7 E(): 2.1e-10%2C 29.8%25 identity in 262 aa overlap. 32.8%25 identity to HP1443%3B~Updated (2006) note: Pfam domain PF00288 GHMP kinases putative ATP-binding protein identified within CDS. Product function modified to more specific family member. Characterised in Campylobacter spp. and Escherichia coli%2C so product function further updated along with EC number. Identity values were marginal%2C so putative added to product function. Functional classification - Misc%3B~PMID:15233799%2C PMID:10570138%2C PMID:10655484%2CPMID:12859972%2C PMID:15466439;gbkey=CDS;gene=ispE;inference=protein motif:Pfam:PF00288;locus_tag=Cj1104;product=putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;protein_id=CAL35221.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1038589	1039098	.	+	.	ID=id-Cj1104;Note=HMMPfam hit to PF00288%2C GHMP kinases putative ATP-binding protei%2C score 1.2e-17;gbkey=misc_feature;gene=ispE;inference=protein motif:Pfam:PF00288;locus_tag=Cj1104
gi|15791399|ref|NC_002163.1|	EMBL	gene	1039098	1039550	.	+	.	ID=gene-Cj1105;Name=smpB;gbkey=Gene;gene=smpB;gene_biotype=protein_coding;locus_tag=Cj1105
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1039098	1039550	.	+	0	ID=cds-CAL35222.1;Parent=gene-Cj1105;Dbxref=EnsemblGenomes-Gn:Cj1105,EnsemblGenomes-Tr:CAL35222,GOA:Q9PNI9,InterPro:IPR000037,InterPro:IPR023620,NCBI_GP:CAL35222.1;Name=CAL35222.1;Note=Original (2000) note: Cj1105%2C smpB%2C small protein B homolog%2C len: 150 aa%3B highly similar to many e.g SMPB_ECOLI small protein B (159 aa)%2C fasta scores%3B opt: 356 z-score: 464.5 E(): 1.4e-18%2C 42.5%25 identity in 146 aa overlap. 55.0%25 identity to HP1444%3B~Updated (2006) note: Pfam domain PF01668 SmpB protein identified within CDS. Further support for product function. Further characterisation has been carried out in Escherichia coli with acceptable identity score. Homolog designation kept within product function. Functional classification - Conserved hypothetical proteins%3B~PMID:10393194%2C PMID:15699355;gbkey=CDS;gene=smpB;inference=protein motif:Pfam:PF01668;locus_tag=Cj1105;product=small protein B homolog;protein_id=CAL35222.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1039101	1039307	.	+	.	ID=id-Cj1105;Note=HMMPfam hit to PF01668%2C SmpB protein%2C score 1.8e-35;gbkey=misc_feature;gene=smpB;inference=protein motif:Pfam:PF01668;locus_tag=Cj1105
gi|15791399|ref|NC_002163.1|	EMBL	gene	1039561	1040163	.	+	.	ID=gene-Cj1106;Name=Cj1106;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1106
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1039561	1040163	.	+	0	ID=cds-CAL35223.1;Parent=gene-Cj1106;Dbxref=EnsemblGenomes-Gn:Cj1106,EnsemblGenomes-Tr:CAL35223,GOA:Q0P9E8,InterPro:IPR012336,InterPro:IPR013740,UniProtKB/TrEMBL:Q0P9E8,NCBI_GP:CAL35223.1;Name=CAL35223.1;Note=Original (2000) note: Cj1106%2C possible periplasmic thioredoxin%2C len: 200 aa%3B similar to active site region of thioredoxins e.g. THIO_BACSU thioredoxin (103 aa)%2C fasta scores%3B opt: 112 z-score: 150.6 E(): 0.43%2C 37.7%25 identity in 69 aa overlap. Contains probable N-terminal signal sequence. No Hp match. Also similar to Cj1207c (29.4%25 identity in 201 aa overlap)%3B~Updated (2006) note: No specific characterisation with acceptable identity score has been carried out yet%2Cso putative kept in product function. Functional classification - Energy metabolism - Electron transport;gbkey=CDS;locus_tag=Cj1106;product=putative periplasmic thioredoxin;protein_id=CAL35223.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1040163	1040453	.	+	.	ID=gene-Cj1107;Name=clpS;gbkey=Gene;gene=clpS;gene_biotype=protein_coding;locus_tag=Cj1107
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1040163	1040453	.	+	0	ID=cds-CAL35224.1;Parent=gene-Cj1107;Dbxref=EnsemblGenomes-Gn:Cj1107,EnsemblGenomes-Tr:CAL35224,GOA:Q9PNI7,InterPro:IPR003769,InterPro:IPR014719,InterPro:IPR022935,NCBI_GP:CAL35224.1;Name=CAL35224.1;Note=Original (2000) note: Cj1107%2C unknown%2C len: 96 aa%3B similar to hypothetical proteins e.g. YLJA_ECOLI (also upstream of clpA) (106 aa)%2C fasta scores%3B opt: 255 z-score: 354.9 E(): 1.8e-12%2C 44.0%25 identity in 84 aa overlap. 38.2%25 identity to HP0032%3B~Updated (2006) note: Pfam domain PF02617 ATP-dependent Clp protease adaptor protein Clps%2Cidentified within CDS. Product function modified to more specific family member based on motif match. Characterised in Escherichia coli with acceptable identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Chaperones%2Cchaperonins%2C heat shock%3B~PMID:12426582%2C PMID:12235156%2C PMID:9278503;gbkey=CDS;gene=clpS;inference=protein motif:Pfam:PF02617;locus_tag=Cj1107;product=ATP-dependent Clp protease adaptor protein;protein_id=CAL35224.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1040196	1040441	.	+	.	ID=id-Cj1107;Note=HMMPfam hit to PF02617%2C ATP-dependent Clp protease adaptor protein C%2C score 2.9e-43;gbkey=misc_feature;gene=clpS;inference=protein motif:Pfam:PF02617;locus_tag=Cj1107
gi|15791399|ref|NC_002163.1|	EMBL	gene	1040450	1042579	.	+	.	ID=gene-Cj1108;Name=clpA;gbkey=Gene;gene=clpA;gene_biotype=protein_coding;locus_tag=Cj1108
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1040450	1042579	.	+	0	ID=cds-CAL35225.1;Parent=gene-Cj1108;Dbxref=EnsemblGenomes-Gn:Cj1108,EnsemblGenomes-Tr:CAL35225,GOA:Q0P9E6,InterPro:IPR001270,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR004176,InterPro:IPR013461,InterPro:IPR019489,InterPro:IPR023150,InterPro:IPR027417,InterPro:IPR028299,UniProtKB/TrEMBL:Q0P9E6,NCBI_GP:CAL35225.1;Name=CAL35225.1;Note=Original (2000) note: Cj1108%2C clpA%2C probable ATP-dependent CLP protease ATP-binding subunit%2C len: CLPA_ECOLI ATP-dependent CLP protease ATP-binding subunit (758 aa)%2C fasta scores%3B opt: 1730 z-score: 1803.9 E(): 0%2C41.2%25 identity in 748 aa overlap. 41.7%25 identity to HP0033. Contains 2x PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00871 Chaperonins clpA/B signature 2%2C and Pfam match to entry PF00495 clpA_B%2C Chaperonins clpA /B. Also similar to clpB Cj0509c (36.5%25 identity in 835 aa overlap)%3B~Updated (2006) note: Pfam domains PF02861 Clp amino terminal domain and PF00004 ATPase family associated with various cellular activities (AAA) were identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Chaperones%2C chaperonins%2C heat shock%3B~PMID:11344323%2C PMID:11274130;gbkey=CDS;gene=clpA;inference=protein motif:Prosite:PS00871;locus_tag=Cj1108;product=ATP-dependent Clp protease ATP-binding subunit;protein_id=CAL35225.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1040489	1040647	.	+	.	ID=id-Cj1108;Note=HMMPfam hit to PF02861%2C Clp amino terminal domain%2Cscore 3.7e-05;gbkey=misc_feature;gene=clpA;inference=protein motif:Pfam:PF02861;locus_tag=Cj1108
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1040990	1041574	.	+	.	ID=id-Cj1108-2;Note=HMMPfam hit to PF00004%2C ATPase family associated with various cellul%2C score 9e-08;gbkey=misc_feature;gene=clpA;inference=protein motif:Pfam:PF00004;locus_tag=Cj1108
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1041005	1041028	.	+	.	ID=id-Cj1108-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=clpA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1108
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1041812	1042288	.	+	.	ID=id-Cj1108-4;Note=HMMPfam hit to PF07724%2C ATPase family associated with various cellul%2C score 6e-80;gbkey=misc_feature;gene=clpA;inference=protein motif:Pfam:PF07724;locus_tag=Cj1108
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1041824	1042480	.	+	.	ID=id-Cj1108-5;Note=HMMPfam hit to PF00004%2C ATPase family associated with various cellul%2C score 3.8e-05;gbkey=misc_feature;gene=clpA;inference=protein motif:Pfam:PF00004;locus_tag=Cj1108
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1041839	1041862	.	+	.	ID=id-Cj1108-6;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=clpA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1108
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1041908	1041964	.	+	.	ID=id-Cj1108-7;Note=PS00871 Chaperonins clpA/B signature 2;gbkey=misc_feature;gene=clpA;inference=protein motif:Prosite:PS00871;locus_tag=Cj1108
gi|15791399|ref|NC_002163.1|	EMBL	gene	1042554	1043201	.	+	.	ID=gene-Cj1109;Name=aat;gbkey=Gene;gene=aat;gene_biotype=protein_coding;locus_tag=Cj1109
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1042554	1043201	.	+	0	ID=cds-CAL35226.1;Parent=gene-Cj1109;Dbxref=EnsemblGenomes-Gn:Cj1109,EnsemblGenomes-Tr:CAL35226,GOA:Q9PNI5,InterPro:IPR004616,InterPro:IPR016181,NCBI_GP:CAL35226.1;Name=CAL35226.1;Note=Original (2000) note: Cj1109%2C aat%2C probable leucyl/phenylalanyl-tRNA--protein transferase%2C len: 215 aa%3B similar to e.g. LPTP_ECOLI leucyl/phenylalanyl-tRNA--protein transferase (EC 2.3.2.-) (234 aa)%2C fasta scores%3B opt: 486 z-score: 598.1 E(): 5.1e-26%2C 37.9%25 identity in 195 aa overlap. No Hp match%3B~Updated (2006) note: PF03588 Leucyl/phenylalanyl-tRNA protein transfer protein identified within CDS. Further support given to product function. Characterised within Esherichia coli%2C with acceptable identity score and appropriate motifs%2C so putative removed from product function. Functional classification - Protein translation and modification%3B~PMID:7657641%2C PMID:8331068;gbkey=CDS;gene=aat;inference=protein motif:Pfam:PF03588;locus_tag=Cj1109;product=leucyl/phenylalanyl-tRNA--protein transferase;protein_id=CAL35226.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1042629	1043123	.	+	.	ID=id-Cj1109;Note=HMMPfam hit to PF03588%2C Leucyl/phenylalanyl-tRNA protein transf%2C score 9.3e-105;gbkey=misc_feature;gene=aat;inference=protein motif:Pfam:PF03588;locus_tag=Cj1109
gi|15791399|ref|NC_002163.1|	EMBL	gene	1043223	1044512	.	-	.	ID=gene-Cj1110c;Name=Cj1110c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1110c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1043223	1044512	.	-	0	ID=cds-CAL35227.1;Parent=gene-Cj1110c;Dbxref=EnsemblGenomes-Gn:Cj1110c,EnsemblGenomes-Tr:CAL35227,GOA:Q0P9E4,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:Q0P9E4,NCBI_GP:CAL35227.1;Name=CAL35227.1;Note=Original (2000) note: Cj1110c%2C probable MCP-type signal transduction protein%2C len: 429 aa%3B similar to TR:O68016 (EMBL:AF010180) Agrobacterium tumefaciens plasmid pTiC58 MCPA (579 aa)%2C fasta scores%3B opt: 749 z-score: 785.2 E(): 0%2C 34.5%25 identity in 496 aa overlap%2Cand to many other proteins with MCP domains e.g. PILJ_PSEAE PILJ protein (682 aa)%2C fasta scores%3B opt: 379 z-score: 399.1 E(): 6.3e-15%2C 26.9%25 identity in 443 aa overlap%2C and HLYB_VIBCH hemolysin secretion protein precursor (548 aa)%2C fasta scores%3B opt: 357 z-score: 377.6 E(): 9.8e-14%2C 37.0%25 identity in 173 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%3B~Updated (2006) note: Specific characterisation with acceptable identity score has not been carried out yet%2C so putative kept in product function. Functional classification - Signal transduction;gbkey=CDS;inference=protein motif:Pfam:PF00015;locus_tag=Cj1110c;product=putative MCP-type signal transduction protein;protein_id=CAL35227.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1043226	1043786	.	-	.	ID=id-Cj1110c;Note=HMMPfam hit to PF00015%2C Methyl-accepting chemotaxis protein (MCP) s%2C score 2.9e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF00015;locus_tag=Cj1110c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1043736	1043864	.	-	.	ID=id-Cj1110c-2;Note=HMMPfam hit to PF00785%2C PAC motif%2C score 5.7e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF00785;locus_tag=Cj1110c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1044102	1044230	.	-	.	ID=id-Cj1110c-3;Note=HMMPfam hit to PF00785%2C PAC motif%2C score 0.11;gbkey=misc_feature;inference=protein motif:Pfam:PF00785;locus_tag=Cj1110c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1044593	1045219	.	-	.	ID=gene-Cj1111c;Name=Cj1111c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1111c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1044593	1045219	.	-	0	ID=cds-CAL35228.1;Parent=gene-Cj1111c;Dbxref=EnsemblGenomes-Gn:Cj1111c,EnsemblGenomes-Tr:CAL35228,GOA:Q0P9E3,InterPro:IPR002771,UniProtKB/TrEMBL:Q0P9E3,NCBI_GP:CAL35228.1;Name=CAL35228.1;Note=Original (2000) note: Cj1111c%2C probable integral membrane protein%2C len: 208 aa%3B similar to many hypothetical membrane proteoins%2C e.g. YVBG_BACSU (211 aa)%2Cfasta scores%3B opt: 324 z-score: 391.8 E(): 1.6e-14%2C 28.8%25 identity in 198 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01914 MarC family integral membrane protein identified within CDS. Also%2C six probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member based on Pfam match. Specific characterisation has not yet been carried out%2C so putative kept within product function. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1111c;product=putative MarC family integral membrane protein;protein_id=CAL35228.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1044614	1044667	.	-	.	ID=id-Cj1111c;Note=6 probable transmembrane helices predicted for Cj1111c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-101%2C 119-141%2C148-170 and 185-202;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1111c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1044710	1044778	.	-	.	ID=id-Cj1111c;Note=6 probable transmembrane helices predicted for Cj1111c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-101%2C 119-141%2C148-170 and 185-202;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1111c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1044797	1044865	.	-	.	ID=id-Cj1111c;Note=6 probable transmembrane helices predicted for Cj1111c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-101%2C 119-141%2C148-170 and 185-202;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1111c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1044917	1044985	.	-	.	ID=id-Cj1111c;Note=6 probable transmembrane helices predicted for Cj1111c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-101%2C 119-141%2C148-170 and 185-202;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1111c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1045022	1045090	.	-	.	ID=id-Cj1111c;Note=6 probable transmembrane helices predicted for Cj1111c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-101%2C 119-141%2C148-170 and 185-202;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1111c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1045133	1045201	.	-	.	ID=id-Cj1111c;Note=6 probable transmembrane helices predicted for Cj1111c by TMHMM2.0 at aa 7-29%2C 44-66%2C 79-101%2C 119-141%2C148-170 and 185-202;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1111c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1044602	1045207	.	-	.	ID=id-Cj1111c-2;Note=HMMPfam hit to PF01914%2C MarC family integral membrane protein%2C score 1.4e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF01914;locus_tag=Cj1111c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1045234	1045593	.	-	.	ID=gene-Cj1112c;Name=Cj1112c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1112c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1045234	1045593	.	-	0	ID=cds-CAL35229.1;Parent=gene-Cj1112c;Dbxref=EnsemblGenomes-Gn:Cj1112c,EnsemblGenomes-Tr:CAL35229,GOA:Q0P9E2,InterPro:IPR002579,InterPro:IPR011057,InterPro:IPR028427,UniProtKB/TrEMBL:Q0P9E2,NCBI_GP:CAL35229.1;Name=CAL35229.1;Note=Original (2000) note: Cj1112c%2C unknown%2C len: 119 aa%3B similar to hypothetical proteins e.g. YEAA_ECOLI (137 aa)%2C fasta scores%3B opt: 329 z-score: 423.3 E(): 2.8e-16%2C44.8%25 identity in 116 aa overlap. Also some similarity to part of e.g. PMSR_STRPN peptide methionine sulfoxide reductase (312 aa)%2C fasta scores%3B opt: 277 z-score: 353.8 E(): 2.1e-12%2C 42.0%25 identity in 119 aa overlap. No Hp match. No dedtectable siilarity to C.j. mrsA (Cj0637c)%3B~Updated (2006) note: Pfam domain PF01641 SelR domain identified within CDS. Product function modified to more specific family member based on motif match. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF01641;locus_tag=Cj1112c;product=putative SelR domain containing protein;protein_id=CAL35229.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1045243	1045590	.	-	.	ID=id-Cj1112c;Note=HMMPfam hit to PF01641%2C SelR domain%2C score 1.8e-58;gbkey=misc_feature;inference=protein motif:Pfam:PF01641;locus_tag=Cj1112c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1045683	1046480	.	+	.	ID=gene-Cj1113;Name=Cj1113;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1113
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1045683	1046480	.	+	0	ID=cds-CAL35230.1;Parent=gene-Cj1113;Dbxref=EnsemblGenomes-Gn:Cj1113,EnsemblGenomes-Tr:CAL35230,InterPro:IPR007402,InterPro:IPR009078,InterPro:IPR011197,UniProtKB/TrEMBL:Q0P9E1,NCBI_GP:CAL35230.1;Name=CAL35230.1;Note=Original (2000) note: Cj1113%2C unknown%2C len: 265 aa%3B similar to a hypothetical protein from Haemophilus Y077_HAEIN HI0077 (288 aa)%2C fasta scores%3B opt: 441 z-score: 521.9 E(): 9.1e-22%2C 34.5%25 identity in 275 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF04305 Protein of unknown function (DUF455) identified within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF04305;locus_tag=Cj1113;product=conserved hypothetical protein Cj1113;protein_id=CAL35230.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1045719	1046477	.	+	.	ID=id-Cj1113;Note=HMMPfam hit to PF04305%2C Protein of unknown function (DUF455)%2C score 4.6e-167;gbkey=misc_feature;inference=protein motif:Pfam:PF04305;locus_tag=Cj1113
gi|15791399|ref|NC_002163.1|	EMBL	gene	1046471	1047199	.	-	.	ID=gene-Cj1114c;Name=pssA;gbkey=Gene;gene=pssA;gene_biotype=protein_coding;locus_tag=Cj1114c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1046471	1047199	.	-	0	ID=cds-CAL35231.1;Parent=gene-Cj1114c;Dbxref=EnsemblGenomes-Gn:Cj1114c,EnsemblGenomes-Tr:CAL35231,GOA:Q0P9E0,InterPro:IPR000462,InterPro:IPR004533,UniProtKB/TrEMBL:Q0P9E0,NCBI_GP:CAL35231.1;Name=CAL35231.1;Note=Original (2000) note: Cj1114c%2C pssA%2C probable CDP-diacylglycerol--serine O-phosphatidyltransferase%2C len: 242 aa%3B similar to the characterised PSS_HELPY CDP-diacylglycerol--serine O-phosphatidyltransferase (EC 2.7.8.8) (HP1071) (237 aa)%2C fasta scores%3B opt: 754 z-score: 933.2 E(): 0%2C 50.9%25 identity in 226 aa overlap%2Cand to others e.g. PSS_YEAST (275 aa)%2C fasta scores%3B opt: 287 z-score: 360.8 E(): 8.5e-13%2C 38.2%25 identity in 165 aa overlap. Contains PS00379 CDP-alcohol phosphatidyltransferases signature%3B~Updated (2006) note: Characterised within Helicobacter pylori with acceptable identity score. Putative not added to product function. Functional classification - Synthesis and modification of macromolecules - Phospholipids%3B~PMID:9244252%2C PMID:9260935;gbkey=CDS;gene=pssA;inference=protein motif:Prosite:PS00379;locus_tag=Cj1114c;product=CDP-diacylglycerol--serine O-phosphatidyltransferase;protein_id=CAL35231.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1046501	1046569	.	-	.	ID=id-Cj1114c;Note=8 probable transmembrane helices predicted for Cj1114c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-92%2C 97-114%2C126-148%2C 158-175%2C 188-207 and 211-233;gbkey=misc_feature;gene=pssA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1114c;part=1/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1046579	1046638	.	-	.	ID=id-Cj1114c;Note=8 probable transmembrane helices predicted for Cj1114c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-92%2C 97-114%2C126-148%2C 158-175%2C 188-207 and 211-233;gbkey=misc_feature;gene=pssA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1114c;part=2/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1046675	1046728	.	-	.	ID=id-Cj1114c;Note=8 probable transmembrane helices predicted for Cj1114c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-92%2C 97-114%2C126-148%2C 158-175%2C 188-207 and 211-233;gbkey=misc_feature;gene=pssA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1114c;part=3/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1046756	1046824	.	-	.	ID=id-Cj1114c;Note=8 probable transmembrane helices predicted for Cj1114c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-92%2C 97-114%2C126-148%2C 158-175%2C 188-207 and 211-233;gbkey=misc_feature;gene=pssA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1114c;part=4/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1046858	1046911	.	-	.	ID=id-Cj1114c;Note=8 probable transmembrane helices predicted for Cj1114c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-92%2C 97-114%2C126-148%2C 158-175%2C 188-207 and 211-233;gbkey=misc_feature;gene=pssA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1114c;part=5/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1046924	1046977	.	-	.	ID=id-Cj1114c;Note=8 probable transmembrane helices predicted for Cj1114c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-92%2C 97-114%2C126-148%2C 158-175%2C 188-207 and 211-233;gbkey=misc_feature;gene=pssA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1114c;part=6/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1047035	1047103	.	-	.	ID=id-Cj1114c;Note=8 probable transmembrane helices predicted for Cj1114c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-92%2C 97-114%2C126-148%2C 158-175%2C 188-207 and 211-233;gbkey=misc_feature;gene=pssA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1114c;part=7/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1047113	1047181	.	-	.	ID=id-Cj1114c;Note=8 probable transmembrane helices predicted for Cj1114c by TMHMM2.0 at aa 7-29%2C 33-55%2C 75-92%2C 97-114%2C126-148%2C 158-175%2C 188-207 and 211-233;gbkey=misc_feature;gene=pssA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1114c;part=8/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1046666	1047085	.	-	.	ID=id-Cj1114c-2;Note=HMMPfam hit to PF01066%2C CDP-alcohol phosphatidyltransferase%2C score 3.4e-23;gbkey=misc_feature;gene=pssA;inference=protein motif:Pfam:PF01066;locus_tag=Cj1114c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1046978	1047046	.	-	.	ID=id-Cj1114c-3;Note=PS00379 CDP-alcohol phosphatidyltransferases signature;gbkey=misc_feature;gene=pssA;inference=protein motif:Prosite:PS00379;locus_tag=Cj1114c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1047209	1047826	.	-	.	ID=gene-Cj1115c;Name=Cj1115c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1115c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1047209	1047826	.	-	0	ID=cds-CAL35232.1;Parent=gene-Cj1115c;Dbxref=EnsemblGenomes-Gn:Cj1115c,EnsemblGenomes-Tr:CAL35232,GOA:Q0P9D9,InterPro:IPR003817,UniProtKB/TrEMBL:Q0P9D9,NCBI_GP:CAL35232.1;Name=CAL35232.1;Note=Original (2000) note: Cj1115c%2C probable membrane protein%2C len: 205 aa%3B simimlar to hypothetical proteins e.g. TR:Q50967 (EMBL:U34760) Neisseria gonorrhoeae ORF259 (259 aa)%2C fasta scores%3B opt: 223 z-score: 281.2 E(): 2.3e-08%2C 24.6%25 identity in 191 aa overlap. No Hp match%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Characterised within Escherichia coli and Bacillus subtilis with identity scores marginal identity scores. Putative kept within product function. Functional classification - Misc%3B~PMID:361737%2C PMID:3042771;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1115c;product=putative phosphatidylserine decarboxylase-related protein;protein_id=CAL35232.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1047695	1047799	.	-	.	ID=id-Cj1115c;Note=1 probable transmembrane helix predicted for Cj1115c by TMHMM2.0 at aa 10-44;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1115c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1047823	1049760	.	-	.	ID=gene-Cj1116c;Name=ftsH;gbkey=Gene;gene=ftsH;gene_biotype=protein_coding;locus_tag=Cj1116c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1047823	1049760	.	-	0	ID=cds-CAL35233.1;Parent=gene-Cj1116c;Dbxref=EnsemblGenomes-Gn:Cj1116c,EnsemblGenomes-Tr:CAL35233,GOA:Q0P9D8,InterPro:IPR000642,InterPro:IPR003593,InterPro:IPR003959,InterPro:IPR003960,InterPro:IPR005936,InterPro:IPR011546,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9D8,NCBI_GP:CAL35233.1;Name=CAL35233.1;Note=Original (2000) note: Cj1116c%2C ftsH%2C probable membrane bound zinc metallopeptidase%2C len: 645 aa%3B similar to many e.g. FTSH_ECOLI cell division protein FTSH (EC 3.4.24.-) (644 aa)%2C fasta scores%3B opt: 1598 z-score: 1665.6 E(): 0%2C 43.3%25 identity in 609 aa overlap. 67.4%25 identity to HP1069. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00674 AAA-protein family signature%2Cand Pfam match to entry PF00004 AAA%2C ATPases associated with various cellular activities (AAA)%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Additional Pfam domains PF06480 FtsH Extracellular and PF01434 Peptidase family M41 were also identified within CDS. Further support given to product function. Characterised in Escherichia coli and others with acceptable identity score%2C so putative not added to product function. Functional classification -Degradation of macromolecules - Proteins%2C peptides and glycopeptides%3B~PMID:8892813%2C PMID:12037319%2C PMID:1925026%2CPMID:8444796;gbkey=CDS;gene=ftsH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1116c;product=membrane bound zinc metallopeptidase;protein_id=CAL35233.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1049320	1049379	.	-	.	ID=id-Cj1116c;Note=2 probable transmembrane helices predicted for Cj1116c by TMHMM2.0 at aa 22-41 and 128-147;gbkey=misc_feature;gene=ftsH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1116c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1049638	1049697	.	-	.	ID=id-Cj1116c;Note=2 probable transmembrane helices predicted for Cj1116c by TMHMM2.0 at aa 22-41 and 128-147;gbkey=misc_feature;gene=ftsH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1116c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1047910	1048539	.	-	.	ID=id-Cj1116c-2;Note=HMMPfam hit to PF01434%2C Peptidase family M41%2C score 1.1e-86;gbkey=misc_feature;gene=ftsH;inference=protein motif:Pfam:PF01434;locus_tag=Cj1116c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1048555	1049124	.	-	.	ID=id-Cj1116c-3;Note=HMMPfam hit to PF00004%2C ATPase family associated with various c%2C score 3e-87;gbkey=misc_feature;gene=ftsH;inference=protein motif:Pfam:PF00004;locus_tag=Cj1116c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1048750	1048806	.	-	.	ID=id-Cj1116c-4;Note=PS00674 AAA-protein family signature;gbkey=misc_feature;gene=ftsH;inference=protein motif:Prosite:PS00674;locus_tag=Cj1116c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1049086	1049109	.	-	.	ID=id-Cj1116c-5;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ftsH;inference=protein motif:Prosite:PS00017;locus_tag=Cj1116c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1049200	1049589	.	-	.	ID=id-Cj1116c-6;Note=HMMPfam hit to PF06480%2C FtsH Extracellular%2C score 4.9e-38;gbkey=misc_feature;gene=ftsH;inference=protein motif:Pfam:PF06480;locus_tag=Cj1116c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1049764	1050609	.	-	.	ID=gene-Cj1117c;Name=prmA;gbkey=Gene;gene=prmA;gene_biotype=protein_coding;locus_tag=Cj1117c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1049764	1050609	.	-	0	ID=cds-CAL35234.1;Parent=gene-Cj1117c;Dbxref=EnsemblGenomes-Gn:Cj1117c,EnsemblGenomes-Tr:CAL35234,GOA:Q9PNH7,InterPro:IPR004498,InterPro:IPR010456,InterPro:IPR029063,NCBI_GP:CAL35234.1;Name=CAL35234.1;Note=Original (2000) note: Cj1117c%2C prmA%2C possible ribosomal protein methyltransferase%2C len: 281 aa%3B some similarity to e.g. PRMA_ECOLI ribosomal protein L11 methyltransferase (293 aa)%2C fasta scores%3B opt: 326 z-score: 401.5 E(): 4.6e-15%2C 31.0%25 identity in 203 aa overlap. 36.4%25 identity to HP1068%3B~Updated (2006) note: Pfam domain PF06325 Ribosomal protein L11 methyltransferase (PrmA) identified within CDS. Product modified to more specific family member based on motif match. Characterised within Escherichia coli with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:8226664%2C PMID:7715456;gbkey=CDS;gene=prmA;inference=protein motif:Pfam:PF06325;locus_tag=Cj1117c;product=ribosomal protein L11 methyltransferase;protein_id=CAL35234.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1049776	1050600	.	-	.	ID=id-Cj1117c;Note=HMMPfam hit to PF06325%2C Ribosomal protein L11 methyltransferase (Prm%2C score 1.6e-22;gbkey=misc_feature;gene=prmA;inference=protein motif:Pfam:PF06325;locus_tag=Cj1117c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1050632	1051024	.	-	.	ID=gene-Cj1118c;Name=cheY;gbkey=Gene;gene=cheY;gene_biotype=protein_coding;locus_tag=Cj1118c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1050632	1051024	.	-	0	ID=cds-CAL35235.1;Parent=gene-Cj1118c;Dbxref=EnsemblGenomes-Gn:Cj1118c,EnsemblGenomes-Tr:CAL35235,GOA:P0C635,InterPro:IPR001789,InterPro:IPR011006,NCBI_GP:CAL35235.1;Name=CAL35235.1;Note=Original (2000) note: Cj1118c%2C cheY%2C chemotaxis regulatory protein%2C len: 130 aa%3B identical to CHEY_CAMJE%2Cand highly similar to e.g. CHEY_ECOLI (128 aa)%2C fasta scores%3B opt: 376 z-score: 468.7 E(): 8.2e-19%2C 48.3%25 identity in 120 aa overlap. 82.8%25 identity to HP1067. Contains Pfam match to entry PF00072 response_reg%2CResponse regulator receiver domain%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Putative not added to product function. Functional classification - Chemotaxis and mobility%3B~PMID:9076738%2C PMID:11912013;gbkey=CDS;gene=cheY;inference=protein motif:Pfam:PF00072;locus_tag=Cj1118c;product=chemotaxis regulatory protein;protein_id=CAL35235.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1050653	1051024	.	-	.	ID=id-Cj1118c;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 3.7e-32;gbkey=misc_feature;gene=cheY;inference=protein motif:Pfam:PF00072;locus_tag=Cj1118c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1051137	1052030	.	-	.	ID=gene-Cj1119c;Name=pglG;gbkey=Gene;gene=pglG;gene_biotype=protein_coding;locus_tag=Cj1119c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1051137	1052030	.	-	0	ID=cds-CAL35236.1;Parent=gene-Cj1119c;Dbxref=EnsemblGenomes-Gn:Cj1119c,EnsemblGenomes-Tr:CAL35236,InterPro:IPR004010,InterPro:IPR029151,UniProtKB/TrEMBL:Q0P9D5,NCBI_GP:CAL35236.1;Name=CAL35236.1;Note=Original (2000) note: Cj1119c%2C wlaM%2C pglG%2C probable integral membrane protein%2C len: 297 aa%3B 99.3%25 identical to TR:O86160 (EMBL:Y11648) C. jejuni 81116 wlaM (297 aa). Also contains short section of similarity to TR:Q56633 (EMBL:L25660) Vibrio cholerae accessory colonization factor (ACFB) (626 aa)%2C fasta scores%3B opt: 165 z-score: 202.6 E(): 0.00055%2C 34.0%25 identity in 103 aa overlap. 37.6%25 identity to HP0158%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. Characterised in Campylobacter jejuni. The putative integral membrane protein shows no known role in N-linked glycosylation. Identifed as part of Campylobacter jejuni N-linked glycosylation locus (Cj1119c - Cj1130c). Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:15752194%2C PMID:16186480%2C PMID:16618123%2CPMID:16547029;gbkey=CDS;gene=pglG;inference=protein motif:TMHMM:2.0;locus_tag=Cj1119c;product=putative integral membrane protein;protein_id=CAL35236.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1051167	1051235	.	-	.	ID=id-Cj1119c;Note=4 probable transmembrane helices predicted for Cj1119c by TMHMM2.0 at aa 161-183%2C 196-218%2C 239-261 and 266-288;gbkey=misc_feature;gene=pglG;inference=protein motif:TMHMM:2.0;locus_tag=Cj1119c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1051248	1051316	.	-	.	ID=id-Cj1119c;Note=4 probable transmembrane helices predicted for Cj1119c by TMHMM2.0 at aa 161-183%2C 196-218%2C 239-261 and 266-288;gbkey=misc_feature;gene=pglG;inference=protein motif:TMHMM:2.0;locus_tag=Cj1119c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1051377	1051445	.	-	.	ID=id-Cj1119c;Note=4 probable transmembrane helices predicted for Cj1119c by TMHMM2.0 at aa 161-183%2C 196-218%2C 239-261 and 266-288;gbkey=misc_feature;gene=pglG;inference=protein motif:TMHMM:2.0;locus_tag=Cj1119c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1051482	1051550	.	-	.	ID=id-Cj1119c;Note=4 probable transmembrane helices predicted for Cj1119c by TMHMM2.0 at aa 161-183%2C 196-218%2C 239-261 and 266-288;gbkey=misc_feature;gene=pglG;inference=protein motif:TMHMM:2.0;locus_tag=Cj1119c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	gene	1052030	1053802	.	-	.	ID=gene-Cj1120c;Name=pglF;gbkey=Gene;gene=pglF;gene_biotype=protein_coding;locus_tag=Cj1120c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1052030	1053802	.	-	0	ID=cds-CAL35237.1;Parent=gene-Cj1120c;Dbxref=EnsemblGenomes-Gn:Cj1120c,EnsemblGenomes-Tr:CAL35237,GOA:Q0P9D4,InterPro:IPR003869,InterPro:IPR016040,InterPro:IPR029063,NCBI_GP:CAL35237.1;Name=CAL35237.1;Note=Original (2000) note: Cj1120c%2C wlaL%2C pglF%2C possible sugar epimerase/dehydratase%2C len: 590 aa%3B 99.5%25 identical to TR:O86159 (EMBL:Y11648) C. jejuni 81116 wlaL (590 aa)%2Cand similar to e.g. CAPD_STAAU Staphylococcus aureus capsular polysaccharide biosynthesis CAPD protein (599 aa)%2C fasta scores%3B opt: 1051 z-score: 1218.6 E(): 0%2C 38.4%25 identity in 614 aa overlap%2C and TR:O69130 (EMBL:AF064070) Burkholderia pseudomallei putative epimerase/dehydratase WBII (637 aa)%2C fasta scores%3B opt: 961 z-score: 1113.9 E(): 0%2C 36.0%25 identity in 605 aa overlap. No Hp ortholog. Contains probable integral membrane domain at N-terminus%3B~Updated (2006) note: Pfam domain PF02719 Polysaccharide biosynthesis protein identified within CDS. Characterised in Campylobacter jejuni. Product function modified to more specific family member. This dehydratase forms EDP-2-acetamido-2%2C6-dideoxy-alpha-D-xylo-hexos-4-ulose. Identifed as part of Campylobacter jejuni N-linked glycosylation locus (Cj1119c - Cj1130c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:16421095 PMID:15752194%2C PMID:16186480%2CPMID:16618123%2C PMID:16547029%2C PMID:16286454;gbkey=CDS;gene=pglF;inference=protein motif:Pfam:PF02719;locus_tag=Cj1120c;product=UDP-GlcNAc C4%2C6 dehydratase;protein_id=CAL35237.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1053497	1053565	.	-	.	ID=id-Cj1120c;Note=3 probable transmembrane helices predicted for Cj1120c by TMHMM2.0 at aa 9-28%2C 38-60 and 80-102;gbkey=misc_feature;gene=pglF;inference=protein motif:TMHMM:2.0;locus_tag=Cj1120c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1053623	1053691	.	-	.	ID=id-Cj1120c;Note=3 probable transmembrane helices predicted for Cj1120c by TMHMM2.0 at aa 9-28%2C 38-60 and 80-102;gbkey=misc_feature;gene=pglF;inference=protein motif:TMHMM:2.0;locus_tag=Cj1120c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1053719	1053778	.	-	.	ID=id-Cj1120c;Note=3 probable transmembrane helices predicted for Cj1120c by TMHMM2.0 at aa 9-28%2C 38-60 and 80-102;gbkey=misc_feature;gene=pglF;inference=protein motif:TMHMM:2.0;locus_tag=Cj1120c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1052057	1053562	.	-	.	ID=id-Cj1120c-2;Note=HMMPfam hit to PF02719%2C Polysaccharide biosynthesis protein%2C score 4e-140;gbkey=misc_feature;gene=pglF;inference=protein motif:Pfam:PF02719;locus_tag=Cj1120c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1053804	1054964	.	-	.	ID=gene-Cj1121c;Name=pglE;gbkey=Gene;gene=pglE;gene_biotype=protein_coding;locus_tag=Cj1121c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1053804	1054964	.	-	0	ID=cds-CAL35238.1;Parent=gene-Cj1121c;Dbxref=EnsemblGenomes-Gn:Cj1121c,EnsemblGenomes-Tr:CAL35238,GOA:Q0P9D3,InterPro:IPR000653,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,NCBI_GP:CAL35238.1;Name=CAL35238.1;Note=Original (2000) note: Cj1121c%2C wlaK%2C pglE%2C possible aminotransferase%2C len: 386 aa%3B 98.7%25 identical to TR:O86158 (EMBL:Y11648) C. jejuni 81116 wlaK (386 aa)%2C and similar to e.g. TR:O68392 (EMBL:AF036614) Brucella melitensis perosamine synthetase rfbE (367 aa)%2C fasta scores%3B opt: 621 z-score: 742.5 E(): 0%2C 31.5%25 identity in 375 aa overlap%2C and TR:P72452 (EMBL:Y00459) Streptomyces griseus aminotransferase strS (378 aa)%2C fasta scores%3B opt: 426 z-score: 510.6 E(): 3.8e-%2C 32.2%25 identity in 264 aa overlap. No Hp ortholog. Contains Pfam match to entry PF01041 DegT_DnrJ_EryC1%2C DegT/DnrJ/EryC1/StrS family%3B~Updated (2006) note: Characterised in Campylobacter jejuni. Product function modified to more specific family member. This protein acts to form 2%2C4-diacetamido bacillosamine. Identifed as part of Campylobacter jejuni N-linked glycosylation locus (Cj1119c - Cj1130c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15752194%2C PMID:16186480%2C PMID:16618123%2CPMID:16547029%2C PMID:16286454%2C PMID:16690622;gbkey=CDS;gene=pglE;inference=protein motif:Pfam:PF01041;locus_tag=Cj1121c;product=UDP-4-keto-6-deoxy-GlcNAc C4 aminotransferase;protein_id=CAL35238.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1053825	1054943	.	-	.	ID=id-Cj1121c;Note=HMMPfam hit to PF01041%2C DegT/DnrJ/EryC1/StrS aminotransferase%2C score 2e-75;gbkey=misc_feature;gene=pglE;inference=protein motif:Pfam:PF01041;locus_tag=Cj1121c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1055060	1055713	.	-	.	ID=gene-Cj1122c;Name=Cj1122c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1122c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1055060	1055713	.	-	0	ID=cds-CAL35239.1;Parent=gene-Cj1122c;Dbxref=EnsemblGenomes-Gn:Cj1122c,EnsemblGenomes-Tr:CAL35239,UniProtKB/TrEMBL:Q0P9D2,NCBI_GP:CAL35239.1;Name=CAL35239.1;Note=Original (2000) note: Cj1122c%2C wlaJ%2C possible integral membrane protein%2C len: 217 aa%3B 99.5%25 identical to TR:G4100601 (EMBL:AF001497) C. jejuni 11168 orfE (217 aa). Not present in C. jejuni 81116. No Hp match%3B~Updated (2006) note: Three probable transmembrane helices predicted by TMHMM2.0;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1122c;product=putative integral membrane protein. Functional classification-Surface polysaccharides%2Clipopolysaccharides and antigens;protein_id=CAL35239.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1055303	1055371	.	-	.	ID=id-Cj1122c;Note=3 probable transmembrane helices predicted for Cj1122c by TMHMM2.0 at aa 33-52%2C 73-95 and 115-137;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1122c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1055429	1055497	.	-	.	ID=id-Cj1122c;Note=3 probable transmembrane helices predicted for Cj1122c by TMHMM2.0 at aa 33-52%2C 73-95 and 115-137;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1122c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1055558	1055617	.	-	.	ID=id-Cj1122c;Note=3 probable transmembrane helices predicted for Cj1122c by TMHMM2.0 at aa 33-52%2C 73-95 and 115-137;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1122c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	gene	1055670	1056257	.	-	.	ID=gene-Cj1123c;Name=pglD;gbkey=Gene;gene=pglD;gene_biotype=protein_coding;locus_tag=Cj1123c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1055670	1056257	.	-	0	ID=cds-CAL35240.1;Parent=gene-Cj1123c;Dbxref=EnsemblGenomes-Gn:Cj1123c,EnsemblGenomes-Tr:CAL35240,GOA:Q0P9D1,InterPro:IPR001451,InterPro:IPR011004,InterPro:IPR016185,InterPro:IPR020019,PDB:2NPO,PDB:2VHE,PDB:3BFP,PDB:3BSS,PDB:3BSW,PDB:3BSY,NCBI_GP:CAL35240.1;Name=CAL35240.1;Note=Original (2000) note: Cj1123c%2C wlaI%2C pglD%2C possible transferase%2C len: 195 aa%3B 98.0%25 identical to TR:O86157 (EMBL:Y11648) C. jejuni 81116 wlaI (203 aa)%2C and similar to e.g. TR:Q46674 (EMBL:U05248) E. coli polysialic acid gene cluster region 2 neuD (207 aa)%2C fasta scores%3B opt: 287 z-score: 358.6 E(): 1.1e-12%2C 28.6%25 identity in 203 aa overlap%2C and in the N-terminus to several acetyltransferases%2C e.g. LPXD_ECOLI UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (340 aa)%2C fasta scores%3B opt: 149 z-score: 188.9 E(): 0.0032%2C 31.7%25 identity in 82 aa overlap. No hp match. Also similar to Cj1321 (30.2%25 identity in 179 aa overlap). Contains 2x Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats)%3B~Updated (2006) note: Characterised in Campylobacter jejuni. Product function modified to more specific family member. This protein acts as an acetyltransferase to form 2%2C4-diacetamido bacillosamine. Identifed as part of Campylobacter jejuni N-linked glycosylation locus (Cj1119c - Cj1130c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:15752194%2C PMID:16186480%2C PMID:16618123%2CPMID:16547029;gbkey=CDS;gene=pglD;inference=protein motif:Pfam:PF00132;locus_tag=Cj1123c;product=acetyltransferase;protein_id=CAL35240.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1055775	1055828	.	-	.	ID=id-Cj1123c;Note=HMMPfam hit to PF00132%2C no description%2C score 4;gbkey=misc_feature;gene=pglD;inference=protein motif:Pfam:PF00132;locus_tag=Cj1123c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1055865	1055918	.	-	.	ID=id-Cj1123c-2;Note=HMMPfam hit to PF00132%2C no description%2C score 20;gbkey=misc_feature;gene=pglD;inference=protein motif:Pfam:PF00132;locus_tag=Cj1123c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1055919	1055972	.	-	.	ID=id-Cj1123c-3;Note=HMMPfam hit to PF00132%2C no description%2C score 65;gbkey=misc_feature;gene=pglD;inference=protein motif:Pfam:PF00132;locus_tag=Cj1123c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1056244	1056846	.	-	.	ID=gene-Cj1124c;Name=pglC;gbkey=Gene;gene=pglC;gene_biotype=protein_coding;locus_tag=Cj1124c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1056244	1056846	.	-	0	ID=cds-CAL35241.1;Parent=gene-Cj1124c;Dbxref=EnsemblGenomes-Gn:Cj1124c,EnsemblGenomes-Tr:CAL35241,GOA:Q0P9D0,InterPro:IPR003362,NCBI_GP:CAL35241.1;Name=CAL35241.1;Note=Original (2000) note: Cj1124c%2C wlaH%2C pglC%2C probable galactosyltransferase%2C len: 200 aa%3B 99.0%25 identical to TR:O86156 (EMBL:Y11648) C. jejuni 81116 wlaH (200 aa)%2C96.5%25 identical to TR:P71124 (EMBL:X91081) C. hyoilei galactosyltransferase RFBP (200 aa)%2C and similar to e.g. RFBP_SALTY undecaprenyl-phosphate galactosephosphotransferase (476 aa)%2C fasta scores%3B opt: 330 z-score: 406.2 E(): 2.5e-15%2C 38.0%25 identity in 200 aa overlap. No Hp match. Contains one possible transmembrane domain%3B~Updated (2006) note: Pfam domain PF02397%2C Bacterial sugar transferase%2C identified within CDS. Characterised in Campylobacter jejuni. Product function modified to more specific family member. This protein transfers UDP bacillosamine to UndP. Putative not added to product function. Identifed as part of Campylobacter jejuni N-linked glycosylation locus (Cj1119c - Cj1130c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15752194%2C PMID:16186480%2C PMID:16618123%2CPMID:16547029;gbkey=CDS;gene=pglC;inference=protein motif:Pfam:PF02397;locus_tag=Cj1124c;product=galactosyltransferase;protein_id=CAL35241.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1056289	1056828	.	-	.	ID=id-Cj1124c;Note=HMMPfam hit to PF02397%2C Bacterial sugar transferase%2C score 1.8e-42;gbkey=misc_feature;gene=pglC;inference=protein motif:Pfam:PF02397;locus_tag=Cj1124c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1056748	1056813	.	-	.	ID=id-Cj1124c-2;Note=1 probable transmembrane helix predicted for Cj1124c by TMHMM2.0 at aa 12-33;gbkey=misc_feature;gene=pglC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1124c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1056839	1057969	.	-	.	ID=gene-Cj1125c;Name=pglA;gbkey=Gene;gene=pglA;gene_biotype=protein_coding;locus_tag=Cj1125c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1056839	1057969	.	-	0	ID=cds-CAL35242.1;Parent=gene-Cj1125c;Dbxref=EnsemblGenomes-Gn:Cj1125c,EnsemblGenomes-Tr:CAL35242,GOA:Q0P9C9,InterPro:IPR001296,InterPro:IPR028098,NCBI_GP:CAL35242.1;Name=CAL35242.1;Note=Original (2000) note: Cj1125c%2C wlaG%2C pglA%2C probable galactosyltransferase%2C len: 376 aa%3B 98.4%25 identical to TR:O86155 (EMBL:Y11648) C. jejuni 81116 wlaG (376 aa)%2C82.7%25 identical to TR:P71123 (EMBL:X91081) C. hyoileigalactosyltransferase RFBF (376 aa)%2C and similar to e.g. TR:O87893 (EMBL:U73942) NEISSERIA MENINGITIDIS GLYCOSYLTRANSFERASE PGLA (376 aa)%2C fasta scores%3B opt: 549 z-score: 651.7 E(): 5.3e-29%2C 29.5%25 identity in 387 aa overlap. No Hp match. Contains Pfam match to entry PF00534 Glycos_transf_1%3B~Updated (2006) note: Pfam domain PF00534%2C Glycosyl transferase group%2C identified within CDS. Characterised in Campylobacter jejuni. Product function modified to more specific family member. This protein acts as the GalNAc transferase of the first GalNAc to bacillosamine. Putative not added to product function. Identifed as part of Campylobacter jejuni N-linked glycosylation locus (Cj1119c - Cj1130c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:15752194%2C PMID:16186480%2C PMID:16618123%2CPMID:16547029;gbkey=CDS;gene=pglA;inference=protein motif:Pfam:PF00534;locus_tag=Cj1125c;product=GalNAc transferase;protein_id=CAL35242.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1056914	1057402	.	-	.	ID=id-Cj1125c;Note=HMMPfam hit to PF00534%2C Glycosyl transferases group%2C score 3.3e-48;gbkey=misc_feature;gene=pglA;inference=protein motif:Pfam:PF00534;locus_tag=Cj1125c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1057979	1060120	.	-	.	ID=gene-Cj1126c;Name=pglB;gbkey=Gene;gene=pglB;gene_biotype=protein_coding;locus_tag=Cj1126c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1057979	1060120	.	-	0	ID=cds-CAL35243.1;Parent=gene-Cj1126c;Dbxref=EnsemblGenomes-Gn:Cj1126c,EnsemblGenomes-Tr:CAL35243,GOA:Q0P9C8,InterPro:IPR003674,NCBI_GP:CAL35243.1;Name=CAL35243.1;Note=Original (2000) note: Cj1126c%2C wlaF%2C pglB%2C probable integral membrane protein%2C possible oligosaccharyl transferase%2C len: 713 aa%3B 98.9%25 identical to TR:O86154 (EMBL:Y11648) C. jejuni 81116 wlaF (713 aa)%2C very weak simlarity to e.g. STT3_HUMAN P46977 oligosaccharyl transferase STT3 subunit homolog (705 aa)%2C blastp scores%3B E%3D 6.7e-05%2C 22%25 identity in 233 aa overlap and 32%25 identity in 56 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02516%2COligosaccharyl transferase STT3 subunit%2C identified within CDS. Characterised in Campylobacter jejuni. Product function modified to more specific family member. This protein acts as the oligosaccharyl transferase to N-glycosylate proteins. Putative not added to product function. Identifed as part of Campylobacter jejuni N-linked glycosylation locus (Cj1119c - Cj1130c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15752194%2C PMID:16186480%2C PMID:16618123%2CPMID:16547029%2C PMID:16356848%2C PMID:16641107;gbkey=CDS;gene=pglB;inference=protein motif:Pfam:PF02516;locus_tag=Cj1126c;product=oligosaccharide transferase to N-glycosylate proteins;protein_id=CAL35243.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1058846	1058914	.	-	.	ID=id-Cj1126c;Note=11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34%2C 97-119%2C 126-143%2C 153-170%2C177-194%2C 198-215%2C 222-244%2C 259-281%2C 329-347%2C 373-390 and 403-425;gbkey=misc_feature;gene=pglB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1126c;part=1/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1058951	1059004	.	-	.	ID=id-Cj1126c;Note=11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34%2C 97-119%2C 126-143%2C 153-170%2C177-194%2C 198-215%2C 222-244%2C 259-281%2C 329-347%2C 373-390 and 403-425;gbkey=misc_feature;gene=pglB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1126c;part=2/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1059080	1059136	.	-	.	ID=id-Cj1126c;Note=11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34%2C 97-119%2C 126-143%2C 153-170%2C177-194%2C 198-215%2C 222-244%2C 259-281%2C 329-347%2C 373-390 and 403-425;gbkey=misc_feature;gene=pglB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1126c;part=3/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1059278	1059346	.	-	.	ID=id-Cj1126c;Note=11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34%2C 97-119%2C 126-143%2C 153-170%2C177-194%2C 198-215%2C 222-244%2C 259-281%2C 329-347%2C 373-390 and 403-425;gbkey=misc_feature;gene=pglB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1126c;part=4/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1059389	1059457	.	-	.	ID=id-Cj1126c;Note=11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34%2C 97-119%2C 126-143%2C 153-170%2C177-194%2C 198-215%2C 222-244%2C 259-281%2C 329-347%2C 373-390 and 403-425;gbkey=misc_feature;gene=pglB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1126c;part=5/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1059476	1059529	.	-	.	ID=id-Cj1126c;Note=11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34%2C 97-119%2C 126-143%2C 153-170%2C177-194%2C 198-215%2C 222-244%2C 259-281%2C 329-347%2C 373-390 and 403-425;gbkey=misc_feature;gene=pglB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1126c;part=6/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1059539	1059592	.	-	.	ID=id-Cj1126c;Note=11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34%2C 97-119%2C 126-143%2C 153-170%2C177-194%2C 198-215%2C 222-244%2C 259-281%2C 329-347%2C 373-390 and 403-425;gbkey=misc_feature;gene=pglB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1126c;part=7/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1059611	1059664	.	-	.	ID=id-Cj1126c;Note=11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34%2C 97-119%2C 126-143%2C 153-170%2C177-194%2C 198-215%2C 222-244%2C 259-281%2C 329-347%2C 373-390 and 403-425;gbkey=misc_feature;gene=pglB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1126c;part=8/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1059692	1059745	.	-	.	ID=id-Cj1126c;Note=11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34%2C 97-119%2C 126-143%2C 153-170%2C177-194%2C 198-215%2C 222-244%2C 259-281%2C 329-347%2C 373-390 and 403-425;gbkey=misc_feature;gene=pglB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1126c;part=9/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1059764	1059832	.	-	.	ID=id-Cj1126c;Note=11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34%2C 97-119%2C 126-143%2C 153-170%2C177-194%2C 198-215%2C 222-244%2C 259-281%2C 329-347%2C 373-390 and 403-425;gbkey=misc_feature;gene=pglB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1126c;part=10/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1060019	1060087	.	-	.	ID=id-Cj1126c;Note=11 probable transmembrane helices predicted for Cj1126c by TMHMM2.0 at aa 12-34%2C 97-119%2C 126-143%2C 153-170%2C177-194%2C 198-215%2C 222-244%2C 259-281%2C 329-347%2C 373-390 and 403-425;gbkey=misc_feature;gene=pglB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1126c;part=11/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1058195	1060096	.	-	.	ID=id-Cj1126c-2;Note=HMMPfam hit to PF02516%2C Oligosaccharyl transferase STT3 subunit%2C score 1e-204;gbkey=misc_feature;gene=pglB;inference=protein motif:Pfam:PF02516;locus_tag=Cj1126c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1060124	1061221	.	-	.	ID=gene-Cj1127c;Name=pglJ;gbkey=Gene;gene=pglJ;gene_biotype=protein_coding;locus_tag=Cj1127c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1060124	1061221	.	-	0	ID=cds-CAL35244.1;Parent=gene-Cj1127c;Dbxref=EnsemblGenomes-Gn:Cj1127c,EnsemblGenomes-Tr:CAL35244,GOA:Q0P9C7,InterPro:IPR001296,NCBI_GP:CAL35244.1;Name=CAL35244.1;Note=Original (2000) note: Cj1127c%2C wlaE%2C probable glycosyltransferase%2C len: 365 aa%3B 98.6%25 identical to TR:O86153 (EMBL:Y11648) C. jejuni 81116 wlaE (365 aa)%2C and similar to e.g. AMSD_ERWAM amylovoran biosynthesis glycosyl transerase AMSD (351 aa)%2C fasta scores%3B opt: 250 z-score: 309.4 E(): 6.2e-10%2C 27.1%25 identity in 351 aa overlap. No Hp match. Contains Pfam match to entry PF00534 Glycos_transf_1%3B~Updated (2006) note: Characterised in Campylobacter jejuni. Product function modified to more specific family member. This protein acts as the GalNAc transferase for the next GalNAc to bacillosamine. Putative not added to product function. Identifed as part of Campylobacter jejuni N-linked glycosylation locus (Cj1119c - Cj1130c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15752194%2C PMID:16186480%2C PMID:16618123%2CPMID:16547029;gbkey=CDS;gene=pglJ;inference=protein motif:Pfam:PF00534;locus_tag=Cj1127c;product=GalNAc transferase;protein_id=CAL35244.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1060184	1060681	.	-	.	ID=id-Cj1127c;Note=HMMPfam hit to PF00534%2C Glycosyl transferases group%2C score 4.1e-42;gbkey=misc_feature;gene=pglJ;inference=protein motif:Pfam:PF00534;locus_tag=Cj1127c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1061209	1062138	.	-	.	ID=gene-Cj1128c;Name=pglI;gbkey=Gene;gene=pglI;gene_biotype=protein_coding;locus_tag=Cj1128c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1061209	1062138	.	-	0	ID=cds-CAL35245.1;Parent=gene-Cj1128c;Dbxref=EnsemblGenomes-Gn:Cj1128c,EnsemblGenomes-Tr:CAL35245,GOA:Q0P9C6,InterPro:IPR001173,InterPro:IPR029044,NCBI_GP:CAL35245.1;Name=CAL35245.1;Note=Original (2000) note: Cj1128c%2C wlaD%2C epsI%2C probable glycosyltransferase%2C len: 309 aa%3B 99.7%25 identical to TR:O86152 (EMBL:Y11648) C. jejuni 81116 wlaD (309 aa)%2C99.7%25 identical to TR:O52906 (EMBL:AJ000854) C. jejuni 11168 epsI (309 aa)%2C and similar to e.g. TR:O87182 (EMBL:AB017355) Streptococcus agalactiae N-acetylglucosaminyltransferase CPSH (333 aa)%2C fasta scores%3B opt: 281 z-score: 324.3 E(): 9.1e-11%2C 23.5%25 identity in 281 aa overlap. No Hp match. Contains Pfam match to entry PF00535 Glycos_transf_2%3B~Updated (2006) note: Characterised in Campylobacter jejuni. Product function modified to more specific family member. This protein is responsible for adding the glucose branch to the maturing glycan. Putative not added to product function. Identifed as part of Campylobacter jejuni N-linked glycosylation locus (Cj1119c - Cj1130c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15752194%2C PMID:16186480%2C PMID:16618123%2CPMID:16547029;gbkey=CDS;gene=pglI;inference=protein motif:Pfam:PF00535;locus_tag=Cj1128c;product=glucosyl transferase;protein_id=CAL35245.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1061647	1062126	.	-	.	ID=id-Cj1128c;Note=HMMPfam hit to PF00535%2C Glycosyl transferase%2C score 1.2e-41;gbkey=misc_feature;gene=pglI;inference=protein motif:Pfam:PF00535;locus_tag=Cj1128c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1062131	1063210	.	-	.	ID=gene-Cj1129c;Name=pglH;gbkey=Gene;gene=pglH;gene_biotype=protein_coding;locus_tag=Cj1129c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1062131	1063210	.	-	0	ID=cds-CAL35246.1;Parent=gene-Cj1129c;Dbxref=EnsemblGenomes-Gn:Cj1129c,EnsemblGenomes-Tr:CAL35246,GOA:Q0P9C5,InterPro:IPR001296,NCBI_GP:CAL35246.1;Name=CAL35246.1;Note=Original (2000) note: Cj1129c%2C wlaC%2C capM%2C probable glycosyltransferase%2C len: 359 aa%3B identical to TR:O52905 (EMBL:AJ000854) C. jejuni 11168 capM (358 aa)%2C 97.2%25 identical to TR:O86151 (EMBL:Y11648) C. jejuni 81116 wlaC (358 aa)%2C and similar to e.g. AMSD_ERWAM amylovoran biosynthesis glycosyl transerase (351 aa)%2C fasta scores%3B opt: 360 z-score: 445.6 E(): 1.6e-17%2C 27.3%25 identity in 362 aa overlap. No Hp match. Contains Pfam match to entry PF00534 Glycos_transf_1%3B~Updated (2006) note: Characterised in Campylobacter jejuni. Product function modified to more specific family member. This protein acts as the transferase/polymerase of GalNAc(s) to bacillosamine. Putative not added to product function. Identifed as part of Campylobacter jejuni N-linked glycosylation locus (Cj1119c - Cj1130c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15752194%2C PMID:16498400%2C PMID:15184581%2CPMID:16186480%2C PMID:16618123%2C PMID:16547029;gbkey=CDS;gene=pglH;inference=protein motif:Pfam:PF00534;locus_tag=Cj1129c;product=GalNAc transferase/polymerase;protein_id=CAL35246.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1062203	1062703	.	-	.	ID=id-Cj1129c;Note=HMMPfam hit to PF00534%2C Glycosyl transferases group%2C score 1e-47;gbkey=misc_feature;gene=pglH;inference=protein motif:Pfam:PF00534;locus_tag=Cj1129c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1063207	1064901	.	-	.	ID=gene-Cj1130c;Name=pglK;gbkey=Gene;gene=pglK;gene_biotype=protein_coding;locus_tag=Cj1130c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1063207	1064901	.	-	0	ID=cds-CAL35247.1;Parent=gene-Cj1130c;Dbxref=EnsemblGenomes-Gn:Cj1130c,EnsemblGenomes-Tr:CAL35247,GOA:Q0P9C4,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR011527,InterPro:IPR017871,InterPro:IPR027417,NCBI_GP:CAL35247.1;Name=CAL35247.1;Note=Original (2000) note: Cj1130c%2C wlaB%2C ABC-type transport protein%2C len: 564 aa%3B 98.2%25 identical to TR:O86150 (EMBL:Y11648) C. jejuni 81116 wlaB (564 aa)%2C and similar to e.g. HLY2_ECOLI hemolysin secretion atp-binding protein (707 aa)%2C fasta scores%3B opt: 655 z-score: 715.2 E(): 1.5e-32%2C 29.0%25 identity in 572 aa overlap. Integral membrane domain in N-term contains Pfam match to entry PF00664 ABC_membrane%2C ABC transporter transmembrane region%2C ATP-binding domain in C-term contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters. 38.3%25 identity to HP1206 (called multidrug resistance protein (hetA))%3B~Updated (2006) note: Characterised in Campylobacter jejuni. Product function modified to more specific family member. This protein flips the glycan across the inner membrane. Putative not added to product function. Identifed as part of Campylobacter jejuni N-linked glycosylation locus (Cj1119c - Cj1130c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15752194%2C PMID:16547029%2C PMID:16498400%2CPMID:16481326;gbkey=CDS;gene=pglK;inference=protein motif:Prosite:PS00211;locus_tag=Cj1130c;product=flippase;protein_id=CAL35247.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1063990	1064043	.	-	.	ID=id-Cj1130c;Note=6 probable transmembrane helices predicted for Cj1130c by TMHMM2.0 at aa 20-42%2C 63-85%2C 146-168%2C 175-197%2C261-280 and 287-304;gbkey=misc_feature;gene=pglK;inference=protein motif:TMHMM:2.0;locus_tag=Cj1130c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1064062	1064121	.	-	.	ID=id-Cj1130c;Note=6 probable transmembrane helices predicted for Cj1130c by TMHMM2.0 at aa 20-42%2C 63-85%2C 146-168%2C 175-197%2C261-280 and 287-304;gbkey=misc_feature;gene=pglK;inference=protein motif:TMHMM:2.0;locus_tag=Cj1130c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1064311	1064379	.	-	.	ID=id-Cj1130c;Note=6 probable transmembrane helices predicted for Cj1130c by TMHMM2.0 at aa 20-42%2C 63-85%2C 146-168%2C 175-197%2C261-280 and 287-304;gbkey=misc_feature;gene=pglK;inference=protein motif:TMHMM:2.0;locus_tag=Cj1130c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1064398	1064466	.	-	.	ID=id-Cj1130c;Note=6 probable transmembrane helices predicted for Cj1130c by TMHMM2.0 at aa 20-42%2C 63-85%2C 146-168%2C 175-197%2C261-280 and 287-304;gbkey=misc_feature;gene=pglK;inference=protein motif:TMHMM:2.0;locus_tag=Cj1130c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1064647	1064715	.	-	.	ID=id-Cj1130c;Note=6 probable transmembrane helices predicted for Cj1130c by TMHMM2.0 at aa 20-42%2C 63-85%2C 146-168%2C 175-197%2C261-280 and 287-304;gbkey=misc_feature;gene=pglK;inference=protein motif:TMHMM:2.0;locus_tag=Cj1130c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1064776	1064844	.	-	.	ID=id-Cj1130c;Note=6 probable transmembrane helices predicted for Cj1130c by TMHMM2.0 at aa 20-42%2C 63-85%2C 146-168%2C 175-197%2C261-280 and 287-304;gbkey=misc_feature;gene=pglK;inference=protein motif:TMHMM:2.0;locus_tag=Cj1130c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1063228	1063779	.	-	.	ID=id-Cj1130c-2;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 2e-60;gbkey=misc_feature;gene=pglK;inference=protein motif:Pfam:PF00005;locus_tag=Cj1130c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1063405	1063449	.	-	.	ID=id-Cj1130c-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=pglK;inference=protein motif:Prosite:PS00211;locus_tag=Cj1130c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1063735	1063758	.	-	.	ID=id-Cj1130c-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=pglK;inference=protein motif:Prosite:PS00017;locus_tag=Cj1130c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1063993	1064862	.	-	.	ID=id-Cj1130c-5;Note=HMMPfam hit to PF00664%2C ABC transporter transmembrane region%2C score 1.9e-07;gbkey=misc_feature;gene=pglK;inference=protein motif:Pfam:PF00664;locus_tag=Cj1130c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1064659	1064706	.	-	.	ID=id-Cj1130c-6;Note=PS00225 Crystallins beta and gamma 'Greek key' motif signature;gbkey=misc_feature;gene=pglK;inference=protein motif:Prosite:PS00225;locus_tag=Cj1130c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1064895	1065881	.	-	.	ID=gene-Cj1131c;Name=gne;gbkey=Gene;gene=gne;gene_biotype=protein_coding;locus_tag=Cj1131c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1064895	1065881	.	-	0	ID=cds-CAL35248.1;Parent=gene-Cj1131c;Dbxref=EnsemblGenomes-Gn:Cj1131c,EnsemblGenomes-Tr:CAL35248,GOA:Q0P9C3,InterPro:IPR001509,InterPro:IPR005886,InterPro:IPR016040,InterPro:IPR025308,UniProtKB/TrEMBL:Q0P9C3,NCBI_GP:CAL35248.1;Name=CAL35248.1;Note=Original (2000) note: Cj1131c%2C galE%2C probable UDP-glucose 4-epimerase%2C len: 328 aa%3B 98.2%25 identical to TR:O86149 (EMBL:Y11648) C. jejuni 81116 galE (328 aa)%2C and similar to e.g. GALE_STRMU UDP-glucose 4-epimerase (EC 5.1.3.2) (333 aa)%2C fasta scores%3B opt: 887 z-score: 1056.0 E(): 0%2C 43.7%25 identity in 327 aa overlap. 50.0%25 identity to HP0360%3B~Updated (2006) note: Pfam domain PF01370%2C NAD dependent epimerase/dehydratase family identified within CDS. Characterised within Campylobacter jejuni with recent evidence allowing product function and gene name to be updated. This protein acts as the UDP-GlcNAc/Glc 4-epimerase for the LOS%2C capsule and N-linked glycan in 11168. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:9720026%2C PMID:14742567%2C PMID:10768949%2CPMID:15509570;gbkey=CDS;gene=gne;inference=protein motif:Pfam:PF01370;locus_tag=Cj1131c;product=UDP-GlcNAc/Glc 4-epimerase;protein_id=CAL35248.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1064901	1065875	.	-	.	ID=id-Cj1131c;Note=HMMPfam hit to PF01370%2C NAD dependent epimerase/dehydratase family%2C score 2.2e-109;gbkey=misc_feature;gene=gne;inference=protein motif:Pfam:PF01370;locus_tag=Cj1131c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1065939	1066733	.	-	.	ID=gene-Cj1132c;Name=Cj1132c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1132c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1065939	1066733	.	-	0	ID=cds-CAL35249.1;Parent=gene-Cj1132c;Dbxref=EnsemblGenomes-Gn:Cj1132c,EnsemblGenomes-Tr:CAL35249,GOA:Q0P9C2,InterPro:IPR012337,InterPro:IPR019288,UniProtKB/TrEMBL:Q0P9C2,NCBI_GP:CAL35249.1;Name=CAL35249.1;Note=Original (2000) note: Cj1132c%2C unknown%2C len: 264 aa%3B some similarity to part of DNA polymerases e.g. DPOL_PYRFU DNA polymerase (775 aa)%2C fasta scores%3B opt: 168 z-score: 197.4 E(): 0.0011%2C 29.6%25 identity in 247 aa overlap. Similar in N- and C-termini to sequential Hp CDSs%3B HP0688 (46.7%25 identity in 169 aa overlap)%2C and HP0689 (47.4%25 identity in 95 aa overlap). Contains Pfam match to entry PF00136 DNA_pol_B%2C DNA polymerase family B%3B~Updated (2006) note: Literature search identified paper giving further clues about product function. Conserved added to product function. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c -Cj1152c). Functional classification - Conserved hypothetical proteins%3B~PMID:15509570;gbkey=CDS;inference=protein motif:Pfam:PF00136;locus_tag=Cj1132c;product=conserved hypothetical protein Cj1132c;protein_id=CAL35249.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1066230	1066733	.	-	.	ID=id-Cj1132c;Note=HMMPfam hit to PF03104%2C DNA polymerase family B%2Cexonuclease do%2C score 0.0038;gbkey=misc_feature;inference=protein motif:Pfam:PF03104;locus_tag=Cj1132c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1066799	1067827	.	+	.	ID=gene-Cj1133;Name=waaC;gbkey=Gene;gene=waaC;gene_biotype=protein_coding;locus_tag=Cj1133
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1066799	1067827	.	+	0	ID=cds-CAL35250.1;Parent=gene-Cj1133;Dbxref=EnsemblGenomes-Gn:Cj1133,EnsemblGenomes-Tr:CAL35250,GOA:Q0P9C1,InterPro:IPR002201,InterPro:IPR011908,UniProtKB/TrEMBL:Q0P9C1,NCBI_GP:CAL35250.1;Name=CAL35250.1;Note=Original (2000) note: Cj1133%2C waaC%2C probable lipopolysaccharide heptosyltransferase%2C len: 342 aa%3B 98.2%25 identical to TR:O87585 (EMBL:AF086705) C. jejuni heptosyltransferase WaaC (342 aa)%2C and similar to e.g. RFAC_ECOLI lipopolysaccharide heptosyltransferase-1 (319 aa)%2C fasta scores%3B opt: 212 z-score: 252.9 E(): 8.6e-07%2C26.2%25 identity in 302 aa overlap. 38.5%25 identity to HP0279. Contains Pfam match to entry PF01075 Heptosyltranf%2C Heptosyltransferase%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Product function further updated. Putative not added to product function. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:16621820%2C PMID:9831648%2C PMID:11689567%2CPMID:15808749%2C PMID:11083778%2C PMID:10660542;gbkey=CDS;gene=waaC;inference=protein motif:Pfam:PF01075;locus_tag=Cj1133;product=heptosyltransferase I;protein_id=CAL35250.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1066991	1067758	.	+	.	ID=id-Cj1133;Note=HMMPfam hit to PF01075%2C Glycosyltransferase family%2Cscore 3e-20;gbkey=misc_feature;gene=waaC;inference=protein motif:Pfam:PF01075;locus_tag=Cj1133
gi|15791399|ref|NC_002163.1|	EMBL	gene	1067817	1068704	.	+	.	ID=gene-Cj1134;Name=htrB;gbkey=Gene;gene=htrB;gene_biotype=protein_coding;locus_tag=Cj1134
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1067817	1068704	.	+	0	ID=cds-CAL35251.1;Parent=gene-Cj1134;Dbxref=EnsemblGenomes-Gn:Cj1134,EnsemblGenomes-Tr:CAL35251,GOA:Q0P9C0,InterPro:IPR004960,UniProtKB/TrEMBL:Q0P9C0,NCBI_GP:CAL35251.1;Name=CAL35251.1;Note=Original (2000) note: Cj1134%2C htrB%2C probable lipid A biosynthesis lauroyl acyltransferase%2C len: 295 aa%3B similar to e.g. HTRB_ECOLI lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) (306 aa)%2C fasta scores%3B opt: 274 z-score: 340.3 E(): 1.2e-11%2C 23.4%25 identity in 299 aa overlap. 27.9%25 identity to HP0280%3B~Updated (2006) note: Pfam domain PF03279 Bacterial lipid A biosynthesis acyltransferase domain was identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet%2C so putative kept within product function. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:11689567%2C PMID:15808749%2C PMID:8662613%2CPMID:12591892%2C PMID:11083778%2C PMID:10660542;gbkey=CDS;gene=htrB;inference=protein motif:Pfam:PF03279;locus_tag=Cj1134;product=putative lipid A biosynthesis lauroyl acyltransferase;protein_id=CAL35251.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1067817	1068671	.	+	.	ID=id-Cj1134;Note=HMMPfam hit to PF03279%2C Bacterial lipid A biosynthesis acyltr%2C score 7e-34;gbkey=misc_feature;gene=htrB;inference=protein motif:Pfam:PF03279;locus_tag=Cj1134
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1067853	1067921	.	+	.	ID=id-Cj1134-2;Note=1 probable transmembrane helix predicted for Cj1134 by TMHMM2.0 at aa 13-35;gbkey=misc_feature;gene=htrB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1134
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1068697	1080900	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1068697..1080900;Note=region with low G+C: 25.4%25;gbkey=misc_feature
gi|15791399|ref|NC_002163.1|	EMBL	gene	1068701	1070248	.	+	.	ID=gene-Cj1135;Name=Cj1135;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1135
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1068701	1070248	.	+	0	ID=cds-CAL35252.1;Parent=gene-Cj1135;Dbxref=EnsemblGenomes-Gn:Cj1135,EnsemblGenomes-Tr:CAL35252,GOA:Q0P9B9,InterPro:IPR001173,InterPro:IPR027791,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P9B9,NCBI_GP:CAL35252.1;Name=CAL35252.1;Note=Original (2000) note: Cj1135%2C probable two-domain glycosyltransferase%2C len: 515 aa%3B contains similarities in N- and C-termini to glycosyltransferases e.g. TR:P95373 (EMBL:U58765) Neisseria meningitidis beta 1%2C4 glucosyltransferase lgtF (252 aa)%2C fatsa scores%3B opt: 380 z-score: 453.4 E(): 5.9e-18%2C 30.9%25 identity in 262 aa overlap%2C and TR:O85457 Pasteurella multocida glycosyl transferase hyaD (864 aa)%2C fasta scores%3B opt: 259 z-score: 302.8 E(): 1.4e-09%2C 28.0%25 identity in 239 aa overlap. No Hp match. Contains 2x Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases%3B~Updated (2006) note: Some characterisation within Neisseria meningitidis%2Chowever%2C identity score was marginal. Appropriate motifs present. Product function modified to more specific family member. This protein is most likely responsible for transferring the two glucose residues to the heptoses. Gilbert (Michel.Gilbert@nrc-cnrc.gc.ca) personal communication. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:11689567%2C PMID:15808749%2C PMID:11083778%2CPMID:10660542;gbkey=CDS;inference=protein motif:Pfam:PF00535;locus_tag=Cj1135;product=putative two-domain glucosyltransferase;protein_id=CAL35252.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1068719	1069219	.	+	.	ID=id-Cj1135;Note=HMMPfam hit to PF00535%2C Glycosyl transferase%2C score 4.7e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF00535;locus_tag=Cj1135
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1069475	1069978	.	+	.	ID=id-Cj1135-2;Note=HMMPfam hit to PF00535%2C Glycosyl transferase%2C score 9.4e-25;gbkey=misc_feature;inference=protein motif:Pfam:PF00535;locus_tag=Cj1135
gi|15791399|ref|NC_002163.1|	EMBL	gene	1070252	1071424	.	+	.	ID=gene-Cj1136;Name=Cj1136;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1136
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1070252	1071424	.	+	0	ID=cds-CAL35253.1;Parent=gene-Cj1136;Dbxref=EnsemblGenomes-Gn:Cj1136,EnsemblGenomes-Tr:CAL35253,GOA:Q0P9B8,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P9B8,NCBI_GP:CAL35253.1;Name=CAL35253.1;Note=Original (2000) note: Cj1136%2C probable galactosyltransferase%2C len: 390 aa%3B similar to e.g. TR:O07340 (EMBL:X85787) Streptococcus pneumoniae SS-1%2C4-galactosyltransferase CPS14J (318 aa)%2C fasta scores%3B opt: 309 z-score: 361.4 E(): 7.8e-13%2C 29.0%25 identity in 290 aa overlap. No Hp match. Contains Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases%3B~Updated (2006) note: Pfam domain PF00535 Glycosyl transferase identified within CDS. Product function updated based on motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:11689567%2C PMID:15808749%2C PMID:11083778%2CPMID:10660542%2C PMID:16594990;gbkey=CDS;inference=protein motif:Pfam:PF00535;locus_tag=Cj1136;product=putative glycosyltransferase;protein_id=CAL35253.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1070264	1070926	.	+	.	ID=id-Cj1136;Note=HMMPfam hit to PF00535%2C Glycosyl transferase%2C score 9.9e-28;gbkey=misc_feature;inference=protein motif:Pfam:PF00535;locus_tag=Cj1136
gi|15791399|ref|NC_002163.1|	EMBL	gene	1071408	1072403	.	-	.	ID=gene-Cj1137c;Name=Cj1137c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1137c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1071408	1072403	.	-	0	ID=cds-CAL35254.1;Parent=gene-Cj1137c;Dbxref=EnsemblGenomes-Gn:Cj1137c,EnsemblGenomes-Tr:CAL35254,GOA:Q0P9B7,InterPro:IPR008441,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P9B7,NCBI_GP:CAL35254.1;Name=CAL35254.1;Note=Original (2000) note: Cj1137c%2C unknown%2C len: 331 aa%3B similar to hypothetcal proteins in polysaccharide biosynthesis operons e.g. TR:O86892 (EMBL:AJ006986) Streptococcus pneumoniae CAPP33FI protein (322 aa)%2C fasta scores%3B opt: 295 z-score: 346.5 E(): 5.3e-12%2C 26.5%25 identity in 294 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF05704 Capsular polysaccharide synthesis protein identified within CDS. Product function modified to more specific family member. No specific characterisation has been carried out yet. Putative kept within product function. Gilbert (Michel.Gilbert@nrc-cnrc.gc.ca) personal communication. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:11689567%2C PMID:14742567%2C PMID:11083778%2CPMID:10660542;gbkey=CDS;inference=protein motif:Pfam:PF05704;locus_tag=Cj1137c;product=putative glycosyltransferase;protein_id=CAL35254.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1071423	1072325	.	-	.	ID=id-Cj1137c;Note=HMMPfam hit to PF05704%2C Capsular polysaccharide synthesis protein%2C score 5.2e-160;gbkey=misc_feature;inference=protein motif:Pfam:PF05704;locus_tag=Cj1137c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1072461	1073630	.	+	.	ID=gene-Cj1138;Name=Cj1138;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1138
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1072461	1073630	.	+	0	ID=cds-CAL35255.1;Parent=gene-Cj1138;Dbxref=EnsemblGenomes-Gn:Cj1138,EnsemblGenomes-Tr:CAL35255,GOA:Q0P9B6,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P9B6,NCBI_GP:CAL35255.1;Name=CAL35255.1;Note=Original (2000) note: Cj1138%2C probable galactosyltransferase%2C len: 389 aa%3B similar to e.g. TR:O07340 (EMBL:X85787) Streptococcus pneumoniae SS-1%2C4-galactosyltransferase CPS14J (318 aa)%2C fasta scores%3B opt: 304 z-score: 361.2 E(): 8e-13%2C 25.8%25 identity in 383 aa overlap. No Hp match. Contains Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases%3B~Updated (2006) note: No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Product function modified to more specific family member. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:16594990%2C PMID:11083778%2C PMID:10660542;gbkey=CDS;inference=protein motif:Pfam:PF00535;locus_tag=Cj1138;product=putative glycosyltransferase;protein_id=CAL35255.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1072473	1073108	.	+	.	ID=id-Cj1138;Note=HMMPfam hit to PF00535%2C Glycosyl transferase%2C score 5.6e-28;gbkey=misc_feature;inference=protein motif:Pfam:PF00535;locus_tag=Cj1138
gi|15791399|ref|NC_002163.1|	EMBL	gene	1073619	1074530	.	-	.	ID=gene-Cj1139c;Name=wlaN;gbkey=Gene;gene=wlaN;gene_biotype=protein_coding;locus_tag=Cj1139c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1073619	1074530	.	-	0	ID=cds-CAL35256.1;Parent=gene-Cj1139c;Dbxref=EnsemblGenomes-Gn:Cj1139c,EnsemblGenomes-Tr:CAL35256,GOA:Q0P9B5,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P9B5,NCBI_GP:CAL35256.1;Name=CAL35256.1;Note=Original (2000) note: Cj1139c%2C probable galactosyltransferase%2C len: 303 aa%3B similar to e.g. TR:O07340 (EMBL:X85787) Streptococcus pneumoniae SS-1%2C4-galactosyltransferase CPS14J (318 aa)%2C fasta scores%3B opt: 309 z-score: 362.2 E(): 7.1e-13%2C 26.1%25 identity in 249 aa overlap. No Hp match. Contains Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases. Contains C(8-9) polymorphic region at aa 111. C(8)%2C the consensus%2C allows translation of the full length protein. C(9) would cause a premature truncation after a further 20 aa%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Product function modified to more specific family member. Putative not added to product function. This protein carries out the beta-1%2C3 galactosyltransferase addition of terminal galactose to LOS. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:10931344%2C PMID:11083778%2C PMID:10660542;gbkey=CDS;gene=wlaN;inference=protein motif:Pfam:PF00535;locus_tag=Cj1139c;product=beta-1%2C3 galactosyltransferase;protein_id=CAL35256.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1074009	1074518	.	-	.	ID=id-Cj1139c;Note=HMMPfam hit to PF00535%2C Glycosyl transferase%2C score 3.7e-39;gbkey=misc_feature;gene=wlaN;inference=protein motif:Pfam:PF00535;locus_tag=Cj1139c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1074585	1075469	.	+	.	ID=gene-Cj1140;Name=cstIII;gbkey=Gene;gene=cstIII;gene_biotype=protein_coding;locus_tag=Cj1140
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1074585	1075469	.	+	0	ID=cds-CAL35257.1;Parent=gene-Cj1140;Dbxref=EnsemblGenomes-Gn:Cj1140,EnsemblGenomes-Tr:CAL35257,GOA:Q0P9B4,InterPro:IPR009251,UniProtKB/TrEMBL:Q0P9B4,NCBI_GP:CAL35257.1;Name=CAL35257.1;Note=Original (2000) note: Cj1140%2C unknown%2C len: 294 aa%3B similar to H. influenzae hypothetical protein in lipopolysaccharide biosynthesis gene cluster Y352_HAEIN HI0352 (ORF1) (231 aa)%2C fasta scores%3B opt: 558 z-score: 672.8 E(): 3.5e-30%2C 41.5%25 identity in 229 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF06002 Alpha-2%2C3-sialyltransferase (CST-I) identified within CDS. Characterisation work carried out within Campylobacter jejuni%2C so product function modified to new family member. Putative not added to product function. This protein transfers sialic acid from cytidine-5'-monophospho-N-acetyl-neuraminic acid (CMP-NeuAc) to LOS. Gilbert (Michel.Gilbert@nrc-cnrc.gc.ca) personal communication. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:11083778%2C PMID:11689567%2C PMID:10660542%2CPMID:14730352%2C PMID:16620397;gbkey=CDS;gene=cstIII;inference=protein motif:Pfam:PF06002;locus_tag=Cj1140;product=alpha-2%2C3 sialyltransferase;protein_id=CAL35257.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1074594	1075448	.	+	.	ID=id-Cj1140;Note=HMMPfam hit to PF06002%2C Alpha-2%2C3-sialyltransferase (CST-I)%2C score 7.4e-239;gbkey=misc_feature;gene=cstIII;inference=protein motif:Pfam:PF06002;locus_tag=Cj1140
gi|15791399|ref|NC_002163.1|	EMBL	gene	1075450	1076481	.	+	.	ID=gene-Cj1141;Name=neuB1;gbkey=Gene;gene=neuB1;gene_biotype=protein_coding;locus_tag=Cj1141
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1075450	1076481	.	+	0	ID=cds-CAL35258.1;Parent=gene-Cj1141;Dbxref=EnsemblGenomes-Gn:Cj1141,EnsemblGenomes-Tr:CAL35258,GOA:Q0P9B3,InterPro:IPR006190,InterPro:IPR013132,InterPro:IPR013785,InterPro:IPR013974,UniProtKB/TrEMBL:Q0P9B3,NCBI_GP:CAL35258.1;Name=CAL35258.1;Note=Original (2000) note: Cj1141%2C neuB1%2C probable N-acetylneuraminic acid synthetase%2C len: 343 aa%3B highly similar to e.g. TR:Q57265 (EMBL:U40740) N-acetylneuraminic acid synthetase (EC 4.1.3.-) (349 aa)%2C fasta scores%3B opt: 1327 z-score: 1554.1 E(): 0%2C 59.0%25 identity in 344 aa overlap. No Hp ortholog. Also similar to Cj1327 (37.1%25 identity in 329 aa overlap) and Cj1317 (34.4%25 identity in 340 aa overlap)%3B~Updated (2006) note: Pfam domains PF03102 NeuB family and PF01354 Antifreeze-like domain were identified within CDS. Characterisation work carried out within Campylobacter jejuni. Product function further modified to more specific family member. Putative not added to product function. This protein acts in the condensation of N-acetyl-D-mannosamine and phosphoenolpyruvate to N-acetylneuraminic acid. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c -Cj1152c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:10712693%2C PMID:11689567%2C PMID:10660542%2CPMID:14742567%2C PMID:16567003;gbkey=CDS;gene=neuB1;inference=protein motif:Pfam:PF03102;locus_tag=Cj1141;product=sialic acid synthase (N-acetylneuraminic acid synthetase);protein_id=CAL35258.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1075552	1076259	.	+	.	ID=id-Cj1141;Note=HMMPfam hit to PF03102%2C NeuB family%2C score 9.2e-91;gbkey=misc_feature;gene=neuB1;inference=protein motif:Pfam:PF03102;locus_tag=Cj1141
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1076305	1076478	.	+	.	ID=id-Cj1141-2;Note=HMMPfam hit to PF01354%2C Antifreeze-like domain%2Cscore 1.8e-30;gbkey=misc_feature;gene=neuB1;inference=protein motif:Pfam:PF01354;locus_tag=Cj1141
gi|15791399|ref|NC_002163.1|	EMBL	gene	1076478	1077593	.	+	.	ID=gene-Cj1142;Name=neuC1;gbkey=Gene;gene=neuC1;gene_biotype=protein_coding;locus_tag=Cj1142
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1076478	1077593	.	+	0	ID=cds-CAL35259.1;Parent=gene-Cj1142;Dbxref=EnsemblGenomes-Gn:Cj1142,EnsemblGenomes-Tr:CAL35259,GOA:Q0P9B2,InterPro:IPR003331,InterPro:IPR020004,UniProtKB/TrEMBL:Q0P9B2,NCBI_GP:CAL35259.1;Name=CAL35259.1;Note=Original (2000) note: Cj1142%2C neuC1%2C probable N-acetylglucosamine-6-phosphate 2-epimerase/N-acetylglucosamine-6-phosphatase%2C len: 371 aa%3B similar to e.g. TR:Q57141 (EMBL:X78068) Neisseria meningitidis putative N-acetylglucosamine-6-phosphate 2-epimerase (EC 5.1.3.-) / N-acetylglucosamine-6-phosphatase (EC 3.1.3.-) (377 aa)%2Cfatsta scores%3B opt: 1029 z-score: 1162.4 E(): 0%2C 44.0%25 identity in 377 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02350 UDP-N-acetylglucosamine 2-epimerase identified within CDS. Further support given to product function. Product function updated based on characterisation work within Neisseria meningitidis (PMID:15518580). Putative kept within product function. This protein plays a role in sialic acid biosysthesis. Gilbert (Michel.Gilbert@nrc-cnrc.gc.ca) personal communication. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15518580%2C PMID:11083778%2C PMID:11689567%2CPMID:10688204%2C PMID:11796612;gbkey=CDS;gene=neuC1;inference=protein motif:Pfam:PF02350;locus_tag=Cj1142;product=putative UDP-N-acetylglucosamine 2-epimerase;protein_id=CAL35259.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1076541	1077539	.	+	.	ID=id-Cj1142;Note=HMMPfam hit to PF02350%2C UDP-N-acetylglucosamine 2-epimerase%2C score 5.7e-149;gbkey=misc_feature;gene=neuC1;inference=protein motif:Pfam:PF02350;locus_tag=Cj1142
gi|15791399|ref|NC_002163.1|	EMBL	gene	1077590	1079200	.	+	.	ID=gene-Cj1143;Name=neuA1%2C cgtA;gbkey=Gene;gene=neuA1%2C cgtA;gene_biotype=protein_coding;locus_tag=Cj1143
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1077590	1079200	.	+	0	ID=cds-CAL35260.1;Parent=gene-Cj1143;Dbxref=EnsemblGenomes-Gn:Cj1143,EnsemblGenomes-Tr:CAL35260,GOA:Q0P9B1,InterPro:IPR003329,InterPro:IPR010446,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P9B1,NCBI_GP:CAL35260.1;Name=CAL35260.1;Note=Original (2000) note: Cj1143%2C neuA1%2C probable acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase)%2C len: 536 aa%3B N-terminus is similar to HP0217 (49.1%25 identity in 279 aa overlap)%2C C-traminus is similar to NEUA_NEIME acylneuraminate cytidylyltransferase (EC 2.7.7.43) (228 aa)%2C fasta scores%3B opt: 471 z-score: 550.3 E(): 2.3e-23%2C39.4%25 identity in 221 aa overlap%2C and to Cj1311 (31.6%25 identity in 215 aa overlap) and Cj1331 (34.7%25 identity in 219 aa overlap)%3B~Updated (2006) note: Pfam domains PF06306 Beta-1%2C4-N-acetylgalactosaminylt transferase and PF02348 Cytidylyltransferase were identified within CDS. Further support given to product function. Product function modified to more specific family member based on recent characterisation papers. This protein converts N-acetylneuraminic acid to CMP N-acetylneuraminic acid. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15808749%2C PMID:11083778%2C PMID:16481326%2CPMID:12044670%2C PMID:10660542%2C PMID:11796612;gbkey=CDS;gene=neuA1%2C cgtA;inference=protein motif:Pfam:PF06306;locus_tag=Cj1143;product=two-domain bifunctional protein (beta-1%2C4-N-acetylgalactosaminyltransferase/CMP-Neu5Ac synthase);protein_id=CAL35260.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1077590	1078522	.	+	.	ID=id-Cj1143;Note=HMMPfam hit to PF06306%2CBeta-1%2C4-N-acetylgalactosaminyltransfera%2C score 6.3e-101;gbkey=misc_feature;gene=neuA1%2C cgtA;inference=protein motif:Pfam:PF06306;locus_tag=Cj1143
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1078544	1079194	.	+	.	ID=id-Cj1143-2;Note=HMMPfam hit to PF02348%2C Cytidylyltransferase%2C score 9.4e-24;gbkey=misc_feature;gene=neuA1%2C cgtA;inference=protein motif:Pfam:PF02348;locus_tag=Cj1143
gi|15791399|ref|NC_002163.1|	EMBL	gene	1079745	1080041	.	-	.	ID=gene-Cj1144c;Name=Cj1144c;gbkey=Gene;gene_biotype=protein_coding;is_ordered=true;locus_tag=Cj1144c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	1079195	1079743	.	-	.	ID=gene-Cj1144c;Name=Cj1144c;gbkey=Gene;gene_biotype=protein_coding;is_ordered=true;locus_tag=Cj1144c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1079745	1080041	.	-	0	ID=cds-CAL35261.1;Parent=gene-Cj1144c;Dbxref=EnsemblGenomes-Gn:Cj1144c,EnsemblGenomes-Tr:CAL35261,InterPro:IPR007577,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P9B0,NCBI_GP:CAL35261.1;Name=CAL35261.1;Note=Original (2000) note: Cj1144c%2C unknown%2C len: 197 aa%3B no Hp match. Contains C(8-9) polymorphism at aa 15%3B C(8)%2C the consnsus gives this CDS%3B C(9) would cause truncation after 4 aa%2C although a Met at aa 23 would allow translation to re-initiate. C(7) or C(10)%2C although not seen in shotgun%2C would allow translation from upstream CDS Cj1145c%3B~Original (2000) note: Cj1145c%2C unknown%2C len: 105 aa%3B no Hp match. Contains C(8-9) polymorphism at aa 99%3B C(8)%2C the consnsus gives this CDS%3B C(9) would cause truncation after4 aa%3B C(7) or C(10)%2C although not seen in shotgun%2C would allow translation into downstream CDS Cj1144c%3B~Updated (2006) note: Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj1144c and Cj1145c as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj1144c;product=hypothetical protein Cj1144c;protein_id=CAL35261.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1079195	1079743	.	-	0	ID=cds-CAL35261.1;Parent=gene-Cj1144c;Dbxref=EnsemblGenomes-Gn:Cj1144c,EnsemblGenomes-Tr:CAL35261,InterPro:IPR007577,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P9B0,NCBI_GP:CAL35261.1;Name=CAL35261.1;Note=Original (2000) note: Cj1144c%2C unknown%2C len: 197 aa%3B no Hp match. Contains C(8-9) polymorphism at aa 15%3B C(8)%2C the consnsus gives this CDS%3B C(9) would cause truncation after 4 aa%2C although a Met at aa 23 would allow translation to re-initiate. C(7) or C(10)%2C although not seen in shotgun%2C would allow translation from upstream CDS Cj1145c%3B~Original (2000) note: Cj1145c%2C unknown%2C len: 105 aa%3B no Hp match. Contains C(8-9) polymorphism at aa 99%3B C(8)%2C the consnsus gives this CDS%3B C(9) would cause truncation after4 aa%3B C(7) or C(10)%2C although not seen in shotgun%2C would allow translation into downstream CDS Cj1144c%3B~Updated (2006) note: Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj1144c and Cj1145c as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj1144c;product=hypothetical protein Cj1144c;protein_id=CAL35261.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1080025	1080849	.	-	.	ID=gene-Cj1146c;Name=waaV;gbkey=Gene;gene=waaV;gene_biotype=protein_coding;locus_tag=Cj1146c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1080025	1080849	.	-	0	ID=cds-CAL35262.1;Parent=gene-Cj1146c;Dbxref=EnsemblGenomes-Gn:Cj1146c,EnsemblGenomes-Tr:CAL35262,GOA:Q0P9A9,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P9A9,NCBI_GP:CAL35262.1;Name=CAL35262.1;Note=Original (2000) note: Cj1146c%2C waaV%2C possible glucosyltransferase%2C len: 274 aa%3B similar to e.g. TR:O87182 (EMBL:AB017355) Streptococcus agalactiae N-acetylglucosaminyltransferase CPSH (333 aa)%2C fasta scores%3B opt: 339 z-score: 402.4 E(): 4.1e-15%2C 31.4%25 identity in 274 aa overlap. No Hp match. Contains Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases%3B~Updated (2006) note: Some characterisation within Escherichia coli%2C however%2C identity score was marginal. Putative kept within product function. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:9792656;gbkey=CDS;gene=waaV;inference=protein motif:Pfam:PF00535;locus_tag=Cj1146c;product=putative glucosyltransferase;protein_id=CAL35262.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1080340	1080837	.	-	.	ID=id-Cj1146c;Note=HMMPfam hit to PF00535%2C Glycosyl transferase%2C score 4.8e-39;gbkey=misc_feature;gene=waaV;inference=protein motif:Pfam:PF00535;locus_tag=Cj1146c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1080908	1081867	.	+	.	ID=gene-Cj1148;Name=waaF;gbkey=Gene;gene=waaF;gene_biotype=protein_coding;locus_tag=Cj1148
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1080908	1081867	.	+	0	ID=cds-CAL35263.1;Parent=gene-Cj1148;Dbxref=EnsemblGenomes-Gn:Cj1148,EnsemblGenomes-Tr:CAL35263,GOA:Q0P9A8,InterPro:IPR002201,InterPro:IPR011910,UniProtKB/TrEMBL:Q0P9A8,NCBI_GP:CAL35263.1;Name=CAL35263.1;Note=Original (2000) note: Cj1148%2C waaF%2C probable ADP-heptose--LPS heptosyltransferase%2C len: 319 aa%3B similar to e.g. TR:Q51063 (EMBL:Z37141) Neisseria gonorrhoeae ADP-heptose:LPS heptosyltransferase II (336 aa)%2C fasta scores%3B opt: 384 z-score: 447.0 E(): 1.3e-17%2C 29.7%25 identity in 333 aa overlap%2C and RFAF_ECOLI ADP-heptose--LPS heptosyltransferase II (348 aa)%2C fasta scores%3B opt: 292 z-score: 341.5 E(): 1e-11%2C 24.1%25 identity in 348 aa overlap. 37.6%25 identity to HP1191. Also similar to Cj1133 (24.8%25 identity in 351 aa overlap). Contains Pfam match to entry PF01075 Heptosyltranf%2CHeptosyltransferase%3B~Updated (2006) note: Pfam domain now modified to Glycosyltransferase family 9 (heptosyltransferase). Characterisation work carried out within Campylobacter jejuni%2C so putative not added to product function. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:9446588%2C PMID:11054112%2C PMID:11914340;gbkey=CDS;gene=waaF;inference=protein motif:Pfam:PF01075;locus_tag=Cj1148;product=heptosyltransferase II;protein_id=CAL35263.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1081100	1081795	.	+	.	ID=id-Cj1148;Note=HMMPfam hit to PF01075%2C Glycosyltransferase family%2Cscore 6.3e-22;gbkey=misc_feature;gene=waaF;inference=protein motif:Pfam:PF01075;locus_tag=Cj1148
gi|15791399|ref|NC_002163.1|	EMBL	gene	1081848	1082408	.	-	.	ID=gene-Cj1149c;Name=gmhA;gbkey=Gene;gene=gmhA;gene_biotype=protein_coding;locus_tag=Cj1149c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1081848	1082408	.	-	0	ID=cds-CAL35264.1;Parent=gene-Cj1149c;Dbxref=EnsemblGenomes-Gn:Cj1149c,EnsemblGenomes-Tr:CAL35264,GOA:Q9PNE6,InterPro:IPR001347,InterPro:IPR004515,PDB:1TK9,NCBI_GP:CAL35264.1;Name=CAL35264.1;Note=Original (2000) note: Cj1149c%2C gmhA%2C probable phosphoheptose isomerase%2C len 186 aa%3B similar to e.g. LPCA_ECOLI phosphoheptose isomerase (EC 5.-.-.-) (192 aa)%2Cfasta scores%3B opt: 494 z-score: 589.9 E(): 1.5e-25%2C 50.0%25 identity in 160 aa overlap. 61.1%25 identity to HP0857. Also similar to Cj1424c (57.8%25 identity in 147 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF01380 SIS domain identified within CDS. Characterised within Escherichia coli and Campylobacter jejuni with acceptable identity scores%2C so putative not added to product function. Product function modified to more specific family member based on charactersiation work. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:10660542%2C PMID:10688204%2C PMID:12101286%2CPMID:11173031;gbkey=CDS;gene=gmhA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1149c;product=sedoheptulose 7-phosphate isomerase;protein_id=CAL35264.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1081860	1082309	.	-	.	ID=id-Cj1149c;Note=HMMPfam hit to PF01380%2C SIS domain%2C score 2.5e-19;gbkey=misc_feature;gene=gmhA;inference=protein motif:Pfam:PF01380;locus_tag=Cj1149c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1082046	1082069	.	-	.	ID=id-Cj1149c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=gmhA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1149c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1082405	1083790	.	-	.	ID=gene-Cj1150c;Name=hldE;gbkey=Gene;gene=hldE;gene_biotype=protein_coding;locus_tag=Cj1150c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1082405	1083790	.	-	0	ID=cds-CAL35265.1;Parent=gene-Cj1150c;Dbxref=EnsemblGenomes-Gn:Cj1150c,EnsemblGenomes-Tr:CAL35265,GOA:Q6TG09,InterPro:IPR004821,InterPro:IPR011611,InterPro:IPR011913,InterPro:IPR011914,InterPro:IPR014729,InterPro:IPR023030,InterPro:IPR029056,NCBI_GP:CAL35265.1;Name=CAL35265.1;Note=Original (2000) note: Cj1150c%2C waaE%2C possible ADP-heptose synthase%2C len: 461 aa%3B similar to TR:Q48046 (EMBL:U17642) Haemophilus influenzae ADP-heptose synthase (342 aa)%2C fasta scores%3B opt: 687 z-score: 784.6 E(): 0%2C40.8%25 identity in 306 aa overlap. Similar in N-term to RBSK_BACSU ribokinase (286 aa)%2C fasta scores%3B opt: 204 z-score: 238.0 E(): 5.9e-06%2C 28.1%25 identity in 295 aa overlap%2C and in C-term to TAGD_BACSU glycerol-3-phosphate cytidylyltransferase (129 aa)%2C fasta scores%3B opt: 208 z-score: 247.5 E(): 1.7e-06%2C 34.9%25 identity in 129 aa overlap. 50.8%25 identity to HP0858. Contains 2x Pfam match to entry PF00294 pfkB%2C pfkB family carbohydrate kinase%3B~Updated (2006) note: Pfam domain PF01467 Cytidylyltransferase identified within CDS. Characterised within Escherichia coli with acceptable identity score. Product function updated to more specific family member. Gene name was formerly designated as waaE. Putative not added to product function. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c -Cj1152c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:10629197%2C PMID:11751812%2C PMID:16030223%2CPMID:11751812%2C PMID:12101286;gbkey=CDS;gene=hldE;inference=protein motif:Pfam:PF01467;locus_tag=Cj1150c;product=D-beta-D-heptose 7-phosphate kinase/D-beta-D-heptose 1-phosphate adenylyltransferase;protein_id=CAL35265.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1082423	1082791	.	-	.	ID=id-Cj1150c;Note=HMMPfam hit to PF01467%2C Cytidylyltransferase%2C score 4.7e-19;gbkey=misc_feature;gene=hldE;inference=protein motif:Pfam:PF01467;locus_tag=Cj1150c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1082882	1083760	.	-	.	ID=id-Cj1150c-2;Note=HMMPfam hit to PF00294%2C pfkB family carbohydrate kinase%2C score 7.8e-26;gbkey=misc_feature;gene=hldE;inference=protein motif:Pfam:PF00294;locus_tag=Cj1150c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1083783	1084736	.	-	.	ID=gene-Cj1151c;Name=hldD;gbkey=Gene;gene=hldD;gene_biotype=protein_coding;locus_tag=Cj1151c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1083783	1084736	.	-	0	ID=cds-CAL35266.1;Parent=gene-Cj1151c;Dbxref=EnsemblGenomes-Gn:Cj1151c,EnsemblGenomes-Tr:CAL35266,GOA:Q0P9A5,InterPro:IPR001509,InterPro:IPR011912,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P9A5,NCBI_GP:CAL35266.1;Name=CAL35266.1;Note=Original (2000) note: Cj1151c%2C waaD%2C probable ADP-L-glycero-D-manno-heptose-6-epimerase%2C len: 317 aa%3B similar to e.g. RFAD_ECOLI ADP-L-glycero-D-manno-heptose-6-epimerase (EC 5.1.3.20) (310 aa)%2C fasta scores%3B opt: 533 z-score: 600.5 E(): 3.8e-26. 32.9%25 identity in 319 aa overlap. 48.3%25 identity to HP0859%3B~Updated (2006) note: Pfam domain PF01370 NAD dependent epimerase/dehydratase family identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Product function has been updated. Gene name was formerly waaD. Putative not added to product function. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:10896473%2C PMID:11751812%2C PMID:16481326%2CPMID:12101286;gbkey=CDS;gene=hldD;inference=protein motif:Pfam:PF01370;locus_tag=Cj1151c;product=ADP-glyceromanno-heptose 6-epimerase;protein_id=CAL35266.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1083804	1084730	.	-	.	ID=id-Cj1151c;Note=HMMPfam hit to PF01370%2C NAD dependent epimerase/dehydratase family%2C score 1.5e-14;gbkey=misc_feature;gene=hldD;inference=protein motif:Pfam:PF01370;locus_tag=Cj1151c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1084737	1085297	.	-	.	ID=gene-Cj1152c;Name=gmhB;gbkey=Gene;gene=gmhB;gene_biotype=protein_coding;locus_tag=Cj1152c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1084737	1085297	.	-	0	ID=cds-CAL35267.1;Parent=gene-Cj1152c;Dbxref=EnsemblGenomes-Gn:Cj1152c,EnsemblGenomes-Tr:CAL35267,GOA:Q6TG07,InterPro:IPR004446,InterPro:IPR006543,InterPro:IPR006549,InterPro:IPR013954,InterPro:IPR023214,NCBI_GP:CAL35267.1;Name=CAL35267.1;Note=Original (2000) note: Cj1152c%2C possible phosphatase%2C len: 186 aa%3B similar to hypothetical proteins e.g. YAED_ECOLI (191 aa)%2C fasta scores%3B opt: 295 z-score: 372.3 E(): 1.9e-13%2C 45.1%25 identity in 153 aa overlap. 46.2%25 identity to HP0860. Some similarity to N-terminal histidinol-phosphatase domain of hisB proteins e.g. HIS7_ECOLI imidazoleglycerol-phosphate dehydratase/histidinol-phosphatase (355 aa)%2C fasta scores%3B opt: 266 z-score: 332.8 E(): 3.1e-11%2C 30.8%25 identity in 146 aa overlap%3B~Updated (2006) note: Pfam domain PF00702 haloacid dehalogenase-like hydrolase identified within CDS. Characterisation work carried out within Escherichia coli and Campylobacter jejuni with acceptable identity scores. GmhB is required for the formation of ADP-D-beta-D-heptose. Product function modified to more specific family member. Putative not added to product function. Identifed as part of Campylobacter jejuni lipooligosaccharide locus (Cj1131c - Cj1152c). Functional classification - Misc%3B~PMID:11751812%2C PMID:12101286;gbkey=CDS;gene=gmhB;inference=protein motif:Pfam:PF00702;locus_tag=Cj1152c;product=D%2CD-heptose 1%2C7-bisphosphate phosphatase;protein_id=CAL35267.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1085379	1085681	.	+	.	ID=gene-Cj1153;Name=Cj1153;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1153
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1085379	1085681	.	+	0	ID=cds-CAL35268.1;Parent=gene-Cj1153;Dbxref=EnsemblGenomes-Gn:Cj1153,EnsemblGenomes-Tr:CAL35268,GOA:Q0P9A3,InterPro:IPR003088,InterPro:IPR009056,UniProtKB/TrEMBL:Q0P9A3,NCBI_GP:CAL35268.1;Name=CAL35268.1;Note=Original (2000) note: Cj1153%2C probable periplasmic cytochrome C%2C len: 100 aa%3B similar to many e.g. 553_DESVH cytochrome C-553 precursor (103 aa)%2C fasta scores%3B opt: 187 z-score: 243.8 E(): 2.8e-06%2C 34.6%25 identity in 107 aa overlap. 31.0%25 identity to HP1227. Contains PS00190 Cytochrome c family heme-binding site signature%2C and Pfam match to entry PF00034 cytochrome_c%3B~Updated (2006) note: Characterisation work has been carried out in Helicobacter pylori%2C however%2C identity searches were marginal. Putative kept in product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:10965034;gbkey=CDS;inference=protein motif:Prosite:PS00190;locus_tag=Cj1153;product=putative periplasmic cytochrome C;protein_id=CAL35268.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1085388	1085456	.	+	.	ID=id-Cj1153;Note=1 probable transmembrane helix predicted for Cj1153 by TMHMM2.0 at aa 4-26;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1153
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1085436	1085678	.	+	.	ID=id-Cj1153-2;Note=HMMPfam hit to PF00034%2C Cytochrome c%2C score 5.8e-09;gbkey=misc_feature;inference=protein motif:Pfam:PF00034;locus_tag=Cj1153
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1085463	1085480	.	+	.	ID=id-Cj1153-3;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj1153
gi|15791399|ref|NC_002163.1|	EMBL	gene	1085704	1085910	.	-	.	ID=gene-Cj1154c;Name=Cj1154c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1154c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1085704	1085910	.	-	0	ID=cds-CAL35269.1;Parent=gene-Cj1154c;Dbxref=EnsemblGenomes-Gn:Cj1154c,EnsemblGenomes-Tr:CAL35269,InterPro:IPR004714,UniProtKB/TrEMBL:Q0P9A2,NCBI_GP:CAL35269.1;Name=CAL35269.1;Note=Original (2000) note: Cj1154c%2C small hydrophobic protein%2C len: 68 aa%3B 38.7%25 identity to HP1163%3B~Updated (2006) note: Pfam domain PF03597 Cytochrome oxidase maturation protein cbb3-type identified within CDS. Also%2C one probable transmembrane helix predicted by TMHMM2.0. Product modified to more specific family member based on motif match. Specific characterisation has not been carried out yet%2C so putative kept within product function. Functional classification - Protein translation and modification;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1154c;product=putative cytochrome oxidase maturation protein cbb3-type;protein_id=CAL35269.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1085761	1085907	.	-	.	ID=id-Cj1154c;Note=HMMPfam hit to PF03597%2C Cytochrome oxidase maturation protein cbb3-t%2C score 4.7e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF03597;locus_tag=Cj1154c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1085830	1085898	.	-	.	ID=id-Cj1154c-2;Note=1 probable transmembrane helix predicted for Cj1154c by TMHMM2.0 at aa 5-27;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1154c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1085907	1088264	.	-	.	ID=gene-Cj1155c;Name=Cj1155c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1155c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1085907	1088264	.	-	0	ID=cds-CAL35270.1;Parent=gene-Cj1155c;Dbxref=EnsemblGenomes-Gn:Cj1155c,EnsemblGenomes-Tr:CAL35270,GOA:Q0P9A1,InterPro:IPR001757,InterPro:IPR006121,InterPro:IPR008250,InterPro:IPR021993,InterPro:IPR023214,InterPro:IPR027256,UniProtKB/TrEMBL:Q0P9A1,NCBI_GP:CAL35270.1;Name=CAL35270.1;Note=Original (2000) note: Cj1155c%2C probable cation-transporting ATPase%2C len: 785 aa%3B similar to members of the E1-E2 ATPase family e.g. ATCU_ECOLI probable copper-transporting ATPase (834 aa)%2C fasta scores%3B opt: 708 z-score: 767.6 E(): 0%2C 28.9%25 identity in 830 aa overlap. 36.5%25 identity to HP1503. Contains 2x Pfam match to entry PF00122 E1-E2_ATPase%3B~Updated (2006) note: Pfam domains PF00702 haloacid dehalogenase-like hydrolase and PF00403 Heavy-metal-associated domain were identified within CDS. Eight probable transmembrane helices predicted by TMHMM2.0. Some characterisation within Escherichia coli and others with marginal identity scores. Putative kept within product function. Functional classification -Transport/binding proteins - Cations;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1155c;product=putative cation-transporting ATPase;protein_id=CAL35270.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1085922	1085975	.	-	.	ID=id-Cj1155c;Note=8 probable transmembrane helices predicted for Cj1155c by TMHMM2.0 at aa 166-188%2C 198-215%2C 235-254%2C259-277%2C 410-432%2C 447-469%2C 741-760 and 764-781;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1155c;part=1/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1085985	1086044	.	-	.	ID=id-Cj1155c;Note=8 probable transmembrane helices predicted for Cj1155c by TMHMM2.0 at aa 166-188%2C 198-215%2C 235-254%2C259-277%2C 410-432%2C 447-469%2C 741-760 and 764-781;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1155c;part=2/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1086858	1086926	.	-	.	ID=id-Cj1155c;Note=8 probable transmembrane helices predicted for Cj1155c by TMHMM2.0 at aa 166-188%2C 198-215%2C 235-254%2C259-277%2C 410-432%2C 447-469%2C 741-760 and 764-781;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1155c;part=3/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1086969	1087037	.	-	.	ID=id-Cj1155c;Note=8 probable transmembrane helices predicted for Cj1155c by TMHMM2.0 at aa 166-188%2C 198-215%2C 235-254%2C259-277%2C 410-432%2C 447-469%2C 741-760 and 764-781;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1155c;part=4/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1087434	1087490	.	-	.	ID=id-Cj1155c;Note=8 probable transmembrane helices predicted for Cj1155c by TMHMM2.0 at aa 166-188%2C 198-215%2C 235-254%2C259-277%2C 410-432%2C 447-469%2C 741-760 and 764-781;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1155c;part=5/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1087503	1087562	.	-	.	ID=id-Cj1155c;Note=8 probable transmembrane helices predicted for Cj1155c by TMHMM2.0 at aa 166-188%2C 198-215%2C 235-254%2C259-277%2C 410-432%2C 447-469%2C 741-760 and 764-781;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1155c;part=6/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1087620	1087673	.	-	.	ID=id-Cj1155c;Note=8 probable transmembrane helices predicted for Cj1155c by TMHMM2.0 at aa 166-188%2C 198-215%2C 235-254%2C259-277%2C 410-432%2C 447-469%2C 741-760 and 764-781;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1155c;part=7/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1087701	1087769	.	-	.	ID=id-Cj1155c;Note=8 probable transmembrane helices predicted for Cj1155c by TMHMM2.0 at aa 166-188%2C 198-215%2C 235-254%2C259-277%2C 410-432%2C 447-469%2C 741-760 and 764-781;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1155c;part=8/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1086153	1086794	.	-	.	ID=id-Cj1155c-2;Note=HMMPfam hit to PF00702%2C haloacid dehalogenase-like hydrolase%2C score 2.8e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF00702;locus_tag=Cj1155c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1086156	1086224	.	-	.	ID=id-Cj1155c-3;Note=PS01229 Hypothetical cof family signature 2;gbkey=misc_feature;inference=protein motif:Prosite:PS01229;locus_tag=Cj1155c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1086804	1087469	.	-	.	ID=id-Cj1155c-4;Note=HMMPfam hit to PF00122%2C E1-E2 ATPase%2C score 1.2e-42;gbkey=misc_feature;inference=protein motif:Pfam:PF00122;locus_tag=Cj1155c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1086906	1086938	.	-	.	ID=id-Cj1155c-5;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1155c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1087830	1088024	.	-	.	ID=id-Cj1155c-6;Note=HMMPfam hit to PF00403%2C Heavy-metal-associated domain%2C score 0.031;gbkey=misc_feature;inference=protein motif:Pfam:PF00403;locus_tag=Cj1155c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1088373	1089671	.	+	.	ID=gene-Cj1156;Name=rho;gbkey=Gene;gene=rho;gene_biotype=protein_coding;locus_tag=Cj1156
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1088373	1089671	.	+	0	ID=cds-CAL35271.1;Parent=gene-Cj1156;Dbxref=EnsemblGenomes-Gn:Cj1156,EnsemblGenomes-Tr:CAL35271,GOA:Q0P9A0,InterPro:IPR000194,InterPro:IPR003593,InterPro:IPR004665,InterPro:IPR011112,InterPro:IPR011113,InterPro:IPR011129,InterPro:IPR012340,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P9A0,NCBI_GP:CAL35271.1;Name=CAL35271.1;Note=Original (2000) note: Cj1156%2C rho%2C transcription termination factor%2C len: 432 aa%3B highly similar to many e.g. RHO_ECOLI transcription termination factor RHO (419 aa)%2C fasta scores%3B opt: 1528 z-score: 1651.7 E(): 0%2C 56.3%25 identity in 414 aa overlap. 73.2%25 identity to HP0550. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domains PF07498 Rho termination factor%2C N-terminal domain%2C PF07497 Rho termination factor%2C RNA-binding domain and also PF00006 ATP synthase alpha/beta family were all identified within CDS. Further support given to product function. Characterised in Escherichia coli%2C so putative not added to product function. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:8757797;gbkey=CDS;gene=rho;inference=protein motif:Prosite:PS00017;locus_tag=Cj1156;product=transcription termination factor;protein_id=CAL35271.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1088436	1088564	.	+	.	ID=id-Cj1156;Note=HMMPfam hit to PF07498%2C Rho termination factor%2CN-terminal domai%2C score 4.9e-18;gbkey=misc_feature;gene=rho;inference=protein motif:Pfam:PF07498;locus_tag=Cj1156
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1088568	1088801	.	+	.	ID=id-Cj1156-2;Note=HMMPfam hit to PF07497%2C Rho termination factor%2CRNA-binding doma%2C score 2.5e-47;gbkey=misc_feature;gene=rho;inference=protein motif:Pfam:PF07497;locus_tag=Cj1156
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1088883	1089509	.	+	.	ID=id-Cj1156-3;Note=HMMPfam hit to PF00006%2C ATP synthase alpha/beta family%2C nucleoti%2C score 4.3e-68;gbkey=misc_feature;gene=rho;inference=protein motif:Pfam:PF00006;locus_tag=Cj1156
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1088946	1088969	.	+	.	ID=id-Cj1156-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=rho;inference=protein motif:Prosite:PS00017;locus_tag=Cj1156
gi|15791399|ref|NC_002163.1|	EMBL	gene	1089675	1091204	.	+	.	ID=gene-Cj1157;Name=dnaX;gbkey=Gene;gene=dnaX;gene_biotype=protein_coding;locus_tag=Cj1157
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1089675	1091204	.	+	0	ID=cds-CAL35272.1;Parent=gene-Cj1157;Dbxref=EnsemblGenomes-Gn:Cj1157,EnsemblGenomes-Tr:CAL35272,GOA:Q0P999,InterPro:IPR003593,InterPro:IPR012763,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P999,NCBI_GP:CAL35272.1;Name=CAL35272.1;Note=Original (2000) note: Cj1157%2C dnaX%2C probable DNA polymerase III subunit gamma%2C len: 509 aa%3B similar to N-terminus of e.g. DP3X_ECOLI DNA polymerase III subunits gamma and tau (EC 2.7.7.7) (643 aa))%2C fasta scores%3B opt: 822 z-score: 894.5 E(): 0%2C 44.5%25 identity in 283 aa overlap. 41.9%25 identity to HP0717. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF00004 ATPase family associated with various cellular activities (AAA). Characterised in Escherichia coli%2C with acceptable identity score. Putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:3534795;gbkey=CDS;gene=dnaX;inference=protein motif:Prosite:PS00017;locus_tag=Cj1157;product=putative DNA polymerase III subunit gamma;protein_id=CAL35272.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1089789	1090361	.	+	.	ID=id-Cj1157;Note=HMMPfam hit to PF00004%2C ATPase family associated with various cellul%2C score 3.1e-07;gbkey=misc_feature;gene=dnaX;inference=protein motif:Pfam:PF00004;locus_tag=Cj1157
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1089804	1089827	.	+	.	ID=id-Cj1157-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=dnaX;inference=protein motif:Prosite:PS00017;locus_tag=Cj1157
gi|15791399|ref|NC_002163.1|	EMBL	gene	1091201	1091428	.	-	.	ID=gene-Cj1158c;Name=Cj1158c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1158c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1091201	1091428	.	-	0	ID=cds-CAL35273.1;Parent=gene-Cj1158c;Dbxref=EnsemblGenomes-Gn:Cj1158c,EnsemblGenomes-Tr:CAL35273,InterPro:IPR018681,UniProtKB/TrEMBL:Q0P998,NCBI_GP:CAL35273.1;Name=CAL35273.1;Note=Original (2000) note: Cj1158c%2C small hydrophobic protein%2C len: 75 aa%3B no Hp match%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1158c;product=small hydrophobic protein;protein_id=CAL35273.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1091216	1091272	.	-	.	ID=id-Cj1158c;Note=2 probable transmembrane helices predicted for Cj1158c by TMHMM2.0 at aa 21-43 and 53-71;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1158c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1091300	1091368	.	-	.	ID=id-Cj1158c;Note=2 probable transmembrane helices predicted for Cj1158c by TMHMM2.0 at aa 21-43 and 53-71;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1158c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	1091407	1091529	.	-	.	ID=gene-Cj1159c;Name=Cj1159c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1159c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1091407	1091529	.	-	0	ID=cds-CAL35274.1;Parent=gene-Cj1159c;Dbxref=EnsemblGenomes-Gn:Cj1159c,EnsemblGenomes-Tr:CAL35274,InterPro:IPR018681,UniProtKB/TrEMBL:Q0P997,NCBI_GP:CAL35274.1;Name=CAL35274.1;Note=Original (2000) note: Cj1159c%2C small hydrophobic protein%2C len: 40 aa%3B no Hp match%3B~Updated (2006) note: One probable transmembrane helices predicted by TMHMM2.0. Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1159c;product=small hydrophobic protein;protein_id=CAL35274.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1091446	1091511	.	-	.	ID=id-Cj1159c;Note=1 probable transmembrane helix predicted for Cj1159c by TMHMM2.0 at aa 7-28;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1159c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1091544	1091723	.	-	.	ID=gene-Cj1160c;Name=Cj1160c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1160c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1091544	1091723	.	-	0	ID=cds-CAL35275.1;Parent=gene-Cj1160c;Dbxref=EnsemblGenomes-Gn:Cj1160c,EnsemblGenomes-Tr:CAL35275,InterPro:IPR018681,UniProtKB/TrEMBL:Q0P996,NCBI_GP:CAL35275.1;Name=CAL35275.1;Note=Original (2000) note: Cj1160c%2C small hydrophobic protein%2C len: 59 aa%3B no Hp match%3B~Updated (2006) note: One probable transmembrane helix predicted for TMHMM2.0. Also%2C one signal peptide predicted by SignalP 2.0 HMM. Product function modified to more specific family member. Putative kept within product function. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1160c;product=putative membrane protein;protein_id=CAL35275.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1091619	1091687	.	-	.	ID=id-Cj1160c;Note=1 probable transmembrane helix predicted for Cj1160c by TMHMM2.0 at aa 13-35;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1160c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1091795	1093894	.	-	.	ID=gene-Cj1161c;Name=Cj1161c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1161c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1091795	1093894	.	-	0	ID=cds-CAL35276.1;Parent=gene-Cj1161c;Dbxref=EnsemblGenomes-Gn:Cj1161c,EnsemblGenomes-Tr:CAL35276,GOA:Q0P995,InterPro:IPR001757,InterPro:IPR006121,InterPro:IPR008250,InterPro:IPR018303,InterPro:IPR023214,InterPro:IPR027256,UniProtKB/TrEMBL:Q0P995,NCBI_GP:CAL35276.1;Name=CAL35276.1;Note=Original (2000) note: Cj1161c%2C probable cation-transporting ATPase%2C len: 699 aa%3B similar to members of the E1-E2 ATPase family e.g. COPA_HELFE copper-transporting ATPase (732 aa)%2C fasta scores%3B opt: 1106 z-score: 1124.4 E(): 0%2C 32.8%25 identity in 729 aa overlap. 33.2%25 identity to HP1072. Contains Pfam match to entry PF00403 HMA%2C Heavy-metal-associated domain containing proteins%2C 2x Pfam match to entry PF00122 E1-E2_ATPase%2C and PS00154 E1-E2 ATPases phosphorylation site%3B~Updated (2006) note: Characterisation in more than one bacteria with marginal identity scores. Putative kept within product function. Functional classification -Transport/binding proteins - Cations%3B~PMID:9440521;gbkey=CDS;inference=protein motif:Prosite:PS00154;locus_tag=Cj1161c;product=putative cation-transporting ATPase;protein_id=CAL35276.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1091813	1091866	.	-	.	ID=id-Cj1161c;Note=8 probable transmembrane helices predicted for Cj1161c by TMHMM2.0 at aa 88-105%2C 115-137%2C 144-166%2C171-190%2C 328-345%2C 360-382%2C 650-672 and 677-694;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1161c;part=1/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1091879	1091947	.	-	.	ID=id-Cj1161c;Note=8 probable transmembrane helices predicted for Cj1161c by TMHMM2.0 at aa 88-105%2C 115-137%2C 144-166%2C171-190%2C 328-345%2C 360-382%2C 650-672 and 677-694;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1161c;part=2/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1092749	1092817	.	-	.	ID=id-Cj1161c;Note=8 probable transmembrane helices predicted for Cj1161c by TMHMM2.0 at aa 88-105%2C 115-137%2C 144-166%2C171-190%2C 328-345%2C 360-382%2C 650-672 and 677-694;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1161c;part=3/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1092860	1092913	.	-	.	ID=id-Cj1161c;Note=8 probable transmembrane helices predicted for Cj1161c by TMHMM2.0 at aa 88-105%2C 115-137%2C 144-166%2C171-190%2C 328-345%2C 360-382%2C 650-672 and 677-694;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1161c;part=4/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1093325	1093384	.	-	.	ID=id-Cj1161c;Note=8 probable transmembrane helices predicted for Cj1161c by TMHMM2.0 at aa 88-105%2C 115-137%2C 144-166%2C171-190%2C 328-345%2C 360-382%2C 650-672 and 677-694;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1161c;part=5/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1093397	1093465	.	-	.	ID=id-Cj1161c;Note=8 probable transmembrane helices predicted for Cj1161c by TMHMM2.0 at aa 88-105%2C 115-137%2C 144-166%2C171-190%2C 328-345%2C 360-382%2C 650-672 and 677-694;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1161c;part=6/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1093484	1093552	.	-	.	ID=id-Cj1161c;Note=8 probable transmembrane helices predicted for Cj1161c by TMHMM2.0 at aa 88-105%2C 115-137%2C 144-166%2C171-190%2C 328-345%2C 360-382%2C 650-672 and 677-694;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1161c;part=7/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1093580	1093633	.	-	.	ID=id-Cj1161c;Note=8 probable transmembrane helices predicted for Cj1161c by TMHMM2.0 at aa 88-105%2C 115-137%2C 144-166%2C171-190%2C 328-345%2C 360-382%2C 650-672 and 677-694;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1161c;part=8/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1092056	1092688	.	-	.	ID=id-Cj1161c-2;Note=HMMPfam hit to PF00702%2C haloacid dehalogenase-like hydrolase%2C score 2.3e-14;gbkey=misc_feature;inference=protein motif:Pfam:PF00702;locus_tag=Cj1161c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1092650	1092670	.	-	.	ID=id-Cj1161c-3;Note=PS00154 E1-E2 ATPases phosphorylation site;gbkey=misc_feature;inference=protein motif:Prosite:PS00154;locus_tag=Cj1161c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1092698	1093360	.	-	.	ID=id-Cj1161c-4;Note=HMMPfam hit to PF00122%2C E1-E2 ATPase%2C score 1.5e-61;gbkey=misc_feature;inference=protein motif:Pfam:PF00122;locus_tag=Cj1161c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1092800	1092832	.	-	.	ID=id-Cj1161c-5;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1161c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1093691	1093882	.	-	.	ID=id-Cj1161c-6;Note=HMMPfam hit to PF00403%2C Heavy-metal-associated domain%2C score 0.00017;gbkey=misc_feature;inference=protein motif:Pfam:PF00403;locus_tag=Cj1161c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1093894	1094088	.	-	.	ID=gene-Cj1162c;Name=Cj1162c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1162c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1093894	1094088	.	-	0	ID=cds-CAL35277.1;Parent=gene-Cj1162c;Dbxref=EnsemblGenomes-Gn:Cj1162c,EnsemblGenomes-Tr:CAL35277,GOA:Q0P994,InterPro:IPR006121,UniProtKB/TrEMBL:Q0P994,NCBI_GP:CAL35277.1;Name=CAL35277.1;Note=Original (2000) note: Cj1162c%2C unknown%2C len: 64 aa%3B no Hp match%3B~Updated (2006) note: Prosite domain PS50846 HMA_2%2CHeavy metal transport/detoxification protein within CDS. Product modified to more specific family member based on motif match. No specific characterisation carried out yet%2Cso putative kept within product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS50846;locus_tag=Cj1162c;product=putative heavy-metal-associated domain protein;protein_id=CAL35277.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1094078	1095028	.	-	.	ID=gene-Cj1163c;Name=Cj1163c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1163c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1094078	1095028	.	-	0	ID=cds-CAL35278.1;Parent=gene-Cj1163c;Dbxref=EnsemblGenomes-Gn:Cj1163c,EnsemblGenomes-Tr:CAL35278,GOA:Q0P993,InterPro:IPR002524,InterPro:IPR027469,UniProtKB/TrEMBL:Q0P993,NCBI_GP:CAL35278.1;Name=CAL35278.1;Note=Original (2000) note: Cj1163c%2C possible cation transport protein%2C len: 316 aa%3B similar to e.g. CZCD_ALCEU cobalt-zinc-cadmium resistance protein CZCD (316 aa)%2Cfasta scores%3B opt: 609 z-score: 699.8 E(): 1.1e-31%2C 36.2%25 identity in 287 aa overlap. No Hp match. Contains His-rich regin at N-terminus. Also similar to Cj0948c (25.7%25 identity in 280 aa overlap)%3B~Updated (2006) note: Pfam domain PF01545 Cation efflux family domain identified within CDS. Also%2C six probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterisation has been carried out in more than one bacteria with marginal identity scores. Putative kept within product function. Functional classification -Transport/binding proteins - Cations%3B~PMID:9044283;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1163c;product=putative cation transport protein;protein_id=CAL35278.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1094357	1094425	.	-	.	ID=id-Cj1163c;Note=6 probable transmembrane helices predicted for Cj1163c by TMHMM2.0 at aa 40-62%2C 72-91%2C 104-126%2C 141-163%2C176-198 and 202-224;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1163c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1094435	1094503	.	-	.	ID=id-Cj1163c;Note=6 probable transmembrane helices predicted for Cj1163c by TMHMM2.0 at aa 40-62%2C 72-91%2C 104-126%2C 141-163%2C176-198 and 202-224;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1163c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1094540	1094608	.	-	.	ID=id-Cj1163c;Note=6 probable transmembrane helices predicted for Cj1163c by TMHMM2.0 at aa 40-62%2C 72-91%2C 104-126%2C 141-163%2C176-198 and 202-224;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1163c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1094651	1094719	.	-	.	ID=id-Cj1163c;Note=6 probable transmembrane helices predicted for Cj1163c by TMHMM2.0 at aa 40-62%2C 72-91%2C 104-126%2C 141-163%2C176-198 and 202-224;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1163c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1094756	1094815	.	-	.	ID=id-Cj1163c;Note=6 probable transmembrane helices predicted for Cj1163c by TMHMM2.0 at aa 40-62%2C 72-91%2C 104-126%2C 141-163%2C176-198 and 202-224;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1163c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1094843	1094911	.	-	.	ID=id-Cj1163c;Note=6 probable transmembrane helices predicted for Cj1163c by TMHMM2.0 at aa 40-62%2C 72-91%2C 104-126%2C 141-163%2C176-198 and 202-224;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1163c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1094081	1094908	.	-	.	ID=id-Cj1163c-2;Note=HMMPfam hit to PF01545%2C Cation efflux family%2C score 1.3e-97;gbkey=misc_feature;inference=protein motif:Pfam:PF01545;locus_tag=Cj1163c
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	1095030	1095081	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1095030..1095081;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	1095104	1095367	.	-	.	ID=gene-Cj1164c;Name=Cj1164c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1164c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1095104	1095367	.	-	0	ID=cds-CAL35279.1;Parent=gene-Cj1164c;Dbxref=EnsemblGenomes-Gn:Cj1164c,EnsemblGenomes-Tr:CAL35279,InterPro:IPR027392,UniProtKB/TrEMBL:Q0P992,NCBI_GP:CAL35279.1;Name=CAL35279.1;Note=Original (2000) note: Cj1164c%2C unknown%2C len: 87 aa%3B no Hp match. Contains two Cys pairs%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj1164c;product=hypothetical protein Cj1164c;protein_id=CAL35279.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1095437	1095931	.	-	.	ID=gene-Cj1165c;Name=Cj1165c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1165c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1095437	1095931	.	-	0	ID=cds-CAL35280.1;Parent=gene-Cj1165c;Dbxref=EnsemblGenomes-Gn:Cj1165c,EnsemblGenomes-Tr:CAL35280,InterPro:IPR024528,UniProtKB/TrEMBL:Q0P991,NCBI_GP:CAL35280.1;Name=CAL35280.1;Note=Original (2000) note: Cj1165c%2C probable integral membrane protein%2C len: 164 aa%3B some similarity to hypothetical proteins e.g. YJJB_ECOLI (128 aa)%2C fasta scores%3B opt: 171 z-score: 229.8 E(): 1.7e-05%2C 29.2%25 identity in 106 aa overlap. No Hp match. Contains one Cys pair%3B~Updated (2006) note: Five probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1165c;product=putative integral membrane protein;protein_id=CAL35280.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1095479	1095547	.	-	.	ID=id-Cj1165c;Note=5 probable transmembrane helices predicted for Cj1165c by TMHMM2.0 at aa 4-23%2C 30-48%2C 53-75%2C 87-109 and 129-151;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1165c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1095605	1095673	.	-	.	ID=id-Cj1165c;Note=5 probable transmembrane helices predicted for Cj1165c by TMHMM2.0 at aa 4-23%2C 30-48%2C 53-75%2C 87-109 and 129-151;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1165c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1095707	1095775	.	-	.	ID=id-Cj1165c;Note=5 probable transmembrane helices predicted for Cj1165c by TMHMM2.0 at aa 4-23%2C 30-48%2C 53-75%2C 87-109 and 129-151;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1165c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1095788	1095844	.	-	.	ID=id-Cj1165c;Note=5 probable transmembrane helices predicted for Cj1165c by TMHMM2.0 at aa 4-23%2C 30-48%2C 53-75%2C 87-109 and 129-151;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1165c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1095863	1095922	.	-	.	ID=id-Cj1165c;Note=5 probable transmembrane helices predicted for Cj1165c by TMHMM2.0 at aa 4-23%2C 30-48%2C 53-75%2C 87-109 and 129-151;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1165c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1095863	1095895	.	-	.	ID=id-Cj1165c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1165c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1095928	1096704	.	-	.	ID=gene-Cj1166c;Name=Cj1166c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1166c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1095928	1096704	.	-	0	ID=cds-CAL35281.1;Parent=gene-Cj1166c;Dbxref=EnsemblGenomes-Gn:Cj1166c,EnsemblGenomes-Tr:CAL35281,InterPro:IPR010619,UniProtKB/TrEMBL:Q0P990,NCBI_GP:CAL35281.1;Name=CAL35281.1;Note=Original (2000) note: Cj1166c%2C probable integral membrane protein%2C len: 258 aa%3B some similarity to hypothetical proteins e.g. YJJP_ECOLI (277 aa)%2C fasta scores%3B opt: 292 z-score: 367.7 E(): 3.5e-13%2C 25.8%25 identity in 236 aa overlap. No Hp match. Contains one Cys pair%3B~Updated (2006) note: Pfam domain PF06738 Protein of unknown function (DUF1212) identified within CDS. Five probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1166c;product=putative integral membrane protein;protein_id=CAL35281.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1095952	1096020	.	-	.	ID=id-Cj1166c;Note=5 probable transmembrane helices predicted for Cj1166c by TMHMM2.0 at aa 120-139%2C 144-161%2C 168-187%2C197-216 and 229-251;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1166c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1096057	1096116	.	-	.	ID=id-Cj1166c;Note=5 probable transmembrane helices predicted for Cj1166c by TMHMM2.0 at aa 120-139%2C 144-161%2C 168-187%2C197-216 and 229-251;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1166c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1096144	1096203	.	-	.	ID=id-Cj1166c;Note=5 probable transmembrane helices predicted for Cj1166c by TMHMM2.0 at aa 120-139%2C 144-161%2C 168-187%2C197-216 and 229-251;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1166c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1096222	1096275	.	-	.	ID=id-Cj1166c;Note=5 probable transmembrane helices predicted for Cj1166c by TMHMM2.0 at aa 120-139%2C 144-161%2C 168-187%2C197-216 and 229-251;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1166c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1096288	1096347	.	-	.	ID=id-Cj1166c;Note=5 probable transmembrane helices predicted for Cj1166c by TMHMM2.0 at aa 120-139%2C 144-161%2C 168-187%2C197-216 and 229-251;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1166c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1096078	1096659	.	-	.	ID=id-Cj1166c-2;Note=HMMPfam hit to PF06738%2C Protein of unknown function (DUF1212)%2C score 9.3e-61;gbkey=misc_feature;inference=protein motif:Pfam:PF06738;locus_tag=Cj1166c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1096771	1097697	.	+	.	ID=gene-Cj1167;Name=ldh;gbkey=Gene;gene=ldh;gene_biotype=protein_coding;locus_tag=Cj1167
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1096771	1097697	.	+	0	ID=cds-CAL35282.1;Parent=gene-Cj1167;Dbxref=EnsemblGenomes-Gn:Cj1167,EnsemblGenomes-Tr:CAL35282,GOA:Q0P989,InterPro:IPR001236,InterPro:IPR001557,InterPro:IPR015955,InterPro:IPR016040,InterPro:IPR018177,InterPro:IPR022383,UniProtKB/TrEMBL:Q0P989,NCBI_GP:CAL35282.1;Name=CAL35282.1;Note=Original (2000) note: Cj1167%2C ldh%2C probable L-lactate dehydrogenase%2C len: LDH_LACLA L-lactate dehydrogenase (EC 1.1.1.27) (324 aa)%2C fasta scores%3B opt: 579 z-score: 683.7 E(): 8.8e-31%2C 33.7%25 identity in 306 aa overlap. No Hp match. Also similar to Cj0532 mdh (25.4%25 identity in 311 aa overlap). Contains%3B~Updated (2006) note: Pfam domains PF00056 lactate/malate dehydrogenase%2C NAD binding domain and PF02866 lactate/malate dehydrogenase%2C alpha/beta C-terminal were identified within CDS. Also%2C Prosite PS00064 L_LDH%2C L-lactate dehydrogenase active site was identified within CDS. Further support given to product function. Characterisation work has been carried out in Lactococcus lactis with marginal identity score. Appropriate motifs present. Putative removed from product function. Functional classification - Energy metabolism -Respiration - Aerobic%3B~PMID:8081494%2C PMID:15644899;gbkey=CDS;gene=ldh;inference=protein motif:Prosite:PS00064;locus_tag=Cj1167;product=L-lactate dehydrogenase;protein_id=CAL35282.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1096774	1097202	.	+	.	ID=id-Cj1167;Note=HMMPfam hit to PF00056%2C lactate/malate dehydrogenase%2C NAD binding do%2C score 2.2e-21;gbkey=misc_feature;gene=ldh;inference=protein motif:Pfam:PF00056;locus_tag=Cj1167
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1097206	1097694	.	+	.	ID=id-Cj1167-2;Note=HMMPfam hit to PF02866%2C lactate/malate dehydrogenase%2C alpha/beta C-t%2C score 7.5e-40;gbkey=misc_feature;gene=ldh;inference=protein motif:Pfam:PF02866;locus_tag=Cj1167
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1097287	1097307	.	+	.	ID=id-Cj1167-3;Note=PS00064 L-lactate dehydrogenase active site;gbkey=misc_feature;gene=ldh;inference=protein motif:Prosite:PS00064;locus_tag=Cj1167
gi|15791399|ref|NC_002163.1|	EMBL	gene	1097694	1098296	.	-	.	ID=gene-Cj1168c;Name=Cj1168c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1168c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1097694	1098296	.	-	0	ID=cds-CAL35283.1;Parent=gene-Cj1168c;Dbxref=EnsemblGenomes-Gn:Cj1168c,EnsemblGenomes-Tr:CAL35283,InterPro:IPR015414,UniProtKB/TrEMBL:Q0P988,NCBI_GP:CAL35283.1;Name=CAL35283.1;Note=Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0%3B~Original (2000) note: Cj1168c%2C probable integral membrane protein (dedA homolog)%2C len: 200 aa%3B similar to many members of the dedA family e.g. APL_LACLA alkaline phosphatase like protein (242 aa)%2C fasta scores%3B opt: 424 z-score: 531.1 E(): 2.8e-22%2C 37.5%25 identity in 208 aa overlap%2C and DEDA_ECOLI DEDA protein (219 aa)%2C fasta scores%3B opt: 240 z-score: 306.1 E(): 9.5e-10%2C 24.7%25 identity in 190 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00597 DedA. Also similar to Cj1210 (24.5%25 identity in 200 aa overlap). Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1168c;product=putative integral membrane protein (dedA homolog);protein_id=CAL35283.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1097718	1097786	.	-	.	ID=id-Cj1168c;Note=4 probable transmembrane helices predicted for Cj1168c by TMHMM2.0 at aa 13-35%2C 55-77%2C 139-161 and 171-193;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1168c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1097814	1097882	.	-	.	ID=id-Cj1168c;Note=4 probable transmembrane helices predicted for Cj1168c by TMHMM2.0 at aa 13-35%2C 55-77%2C 139-161 and 171-193;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1168c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1098066	1098134	.	-	.	ID=id-Cj1168c;Note=4 probable transmembrane helices predicted for Cj1168c by TMHMM2.0 at aa 13-35%2C 55-77%2C 139-161 and 171-193;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1168c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1098192	1098260	.	-	.	ID=id-Cj1168c;Note=4 probable transmembrane helices predicted for Cj1168c by TMHMM2.0 at aa 13-35%2C 55-77%2C 139-161 and 171-193;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1168c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1097766	1098242	.	-	.	ID=id-Cj1168c-2;Note=HMMPfam hit to PF00597%2C DedA family%2C score 7.9e-14;gbkey=misc_feature;inference=protein motif:Pfam:PF00597;locus_tag=Cj1168c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1098045	1098092	.	-	.	ID=id-Cj1168c-3;Note=PS00225 Crystallins beta and gamma 'Greek key' motif signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00225;locus_tag=Cj1168c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1098377	1098604	.	-	.	ID=gene-Cj1169c;Name=Cj1169c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1169c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1098377	1098604	.	-	0	ID=cds-CAL35284.1;Parent=gene-Cj1169c;Dbxref=EnsemblGenomes-Gn:Cj1169c,EnsemblGenomes-Tr:CAL35284,UniProtKB/TrEMBL:Q0P987,NCBI_GP:CAL35284.1;Name=CAL35284.1;Note=Original (2000) note: Cj1169c%2C probable periplasmic protein%2C len: 75 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1169c;product=putative periplasmic protein;protein_id=CAL35284.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1098615	1100036	.	-	.	ID=gene-Cj1170c;Name=omp50;gbkey=Gene;gene=omp50;gene_biotype=protein_coding;locus_tag=Cj1170c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1098615	1100036	.	-	0	ID=cds-CAL35285.1;Parent=gene-Cj1170c;Dbxref=EnsemblGenomes-Gn:Cj1170c,EnsemblGenomes-Tr:CAL35285,InterPro:IPR021803,UniProtKB/TrEMBL:Q0P986,NCBI_GP:CAL35285.1;Name=CAL35285.1;Note=Original (2000) note: Cj1170c%2C omp50%2C outer membrane protein%2C len: 473 aa%3B no Hp match. Contains N-terminal signal sequence and coiled-coil region between aa 60-90. Identification as an outer membrane protein by M-J. Bolla (Jean-Michel.Bolla@medicine.univ-mrs.fr) personal communication%3B~Updated (2006) note: Further characterisation with attached papers give more information on protein naming. Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:11104668%2C PMID:15131219;gbkey=CDS;gene=omp50;locus_tag=Cj1170c;product=50 kda outer membrane protein precursor;protein_id=CAL35285.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1100192	1100674	.	-	.	ID=gene-Cj1171c;Name=ppi;gbkey=Gene;gene=ppi;gene_biotype=protein_coding;locus_tag=Cj1171c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1100192	1100674	.	-	0	ID=cds-CAL35286.1;Parent=gene-Cj1171c;Dbxref=EnsemblGenomes-Gn:Cj1171c,EnsemblGenomes-Tr:CAL35286,GOA:Q0P985,InterPro:IPR002130,InterPro:IPR020892,InterPro:IPR024936,InterPro:IPR029000,UniProtKB/TrEMBL:Q0P985,NCBI_GP:CAL35286.1;Name=CAL35286.1;Note=Original (2000) note: Cj1171c%2C ppi%2C probable peptidyl-prolyl cis-trans isomerase%2C len: 480 aa%3B similar to many e.g. YPB_BACSU peptidyl-prolyl cis-trans isomerase B (EC 5.2.1.8) (143 aa)%2C fasta scores%3B opt: 537 z-score: 643.2 E(): 1.6e-28%2C 56.2%25 identity in 137 aa overlap. 55.3%25 identity to HP1441. Contains PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature%2C and Pfam match to entry PF00160 pro_isomerase%2CPeptidyl-prolyl cis-trans isomerases%3B~Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score%2C so putative not added to product function. Functional classification -Protein translation and modification%3B~PMID:8022278;gbkey=CDS;gene=ppi;inference=protein motif:Prosite:PS00170;locus_tag=Cj1171c;product=peptidyl-prolyl cis-trans isomerase;protein_id=CAL35286.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1100195	1100632	.	-	.	ID=id-Cj1171c;Note=HMMPfam hit to PF00160%2C Cyclophilin type peptidyl-prolyl cis-tr%2C score 7.2e-55;gbkey=misc_feature;gene=ppi;inference=protein motif:Pfam:PF00160;locus_tag=Cj1171c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1100474	1100527	.	-	.	ID=id-Cj1171c-2;Note=PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature;gbkey=misc_feature;gene=ppi;inference=protein motif:Prosite:PS00170;locus_tag=Cj1171c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1100684	1101391	.	-	.	ID=gene-Cj1172c;Name=Cj1172c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1172c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1100684	1101391	.	-	0	ID=cds-CAL35287.1;Parent=gene-Cj1172c;Dbxref=EnsemblGenomes-Gn:Cj1172c,EnsemblGenomes-Tr:CAL35287,GOA:Q9PNC3,InterPro:IPR002876,InterPro:IPR017856,InterPro:IPR026563,InterPro:IPR026564,InterPro:IPR029072,NCBI_GP:CAL35287.1;Name=CAL35287.1;Note=Original (2000) note: Cj1172c%2C unknown%2C len: 235 aa%3B similar to hypothetical proteins e.g. YEBC_ECOLI (246 aa)%2C fasta scores%3B opt: 508 z-score: 579.3 E(): 5.7e-25%2C37.1%25 identity in 229 aa overlap. 58.1%25 identity to HP0162%3B~Updated (2006) note: Pfam domain PF01709 Domain of unknown function DUF28 identified within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01709;locus_tag=Cj1172c;product=conserved hypothetical protein Cj1172c;protein_id=CAL35287.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1100687	1101385	.	-	.	ID=id-Cj1172c;Note=HMMPfam hit to PF01709%2C Domain of unknown function DUF28%2C score 2.1e-118;gbkey=misc_feature;inference=protein motif:Pfam:PF01709;locus_tag=Cj1172c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1101500	1101841	.	+	.	ID=gene-Cj1173;Name=Cj1173;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1173
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1101500	1101841	.	+	0	ID=cds-CAL35288.1;Parent=gene-Cj1173;Dbxref=EnsemblGenomes-Gn:Cj1173,EnsemblGenomes-Tr:CAL35288,GOA:Q0P983,InterPro:IPR000390,UniProtKB/TrEMBL:Q0P983,NCBI_GP:CAL35288.1;Name=CAL35288.1;Note=Original (2000) note: Cj1173%2C possible efflux protein%2C len: 113 aa%3B similar to many e.g. EBR_STAAU ethidium bromide resistance protein (107 aa)%2C fasta scores%3B opt: 232 z-score: 309.2 E(): 6.3e-10%2C 38.0%25 identity in 100 aa overlap. No Hp match. Contains Pfam match to entry PF00893 DUF7%2C Integral membrane protein. Also similar to Cj0310c (27.1%25 identity in 107 aa overlap)%3B~Updated (2006) note: Pfam domain PF00893 Small Multidrug Resistance protein identified within CDS. Also%2Cfour probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Some characterisation in Escherichia coli with acceptable identity score. Putative kept within product function. Additional paper (PMID:16048946) giving further information within Campylobacter spp. Functional classification - Drug/analogue sensitivity%3B~PMID:11566977%2C PMID:15919996%2C PMID:16048946;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1173;product=putative efflux protein (multidrug resistance protein);protein_id=CAL35288.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1101518	1101586	.	+	.	ID=id-Cj1173;Note=4 probable transmembrane helices predicted for Cj1173 by TMHMM2.0 at aa 7-29%2C 34-53%2C 62-84 and 89-111;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1173;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1101599	1101658	.	+	.	ID=id-Cj1173;Note=4 probable transmembrane helices predicted for Cj1173 by TMHMM2.0 at aa 7-29%2C 34-53%2C 62-84 and 89-111;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1173;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1101683	1101751	.	+	.	ID=id-Cj1173;Note=4 probable transmembrane helices predicted for Cj1173 by TMHMM2.0 at aa 7-29%2C 34-53%2C 62-84 and 89-111;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1173;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1101764	1101832	.	+	.	ID=id-Cj1173;Note=4 probable transmembrane helices predicted for Cj1173 by TMHMM2.0 at aa 7-29%2C 34-53%2C 62-84 and 89-111;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1173;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1101527	1101796	.	+	.	ID=id-Cj1173-2;Note=HMMPfam hit to PF00893%2C Small Multidrug Resistance protein%2C score 8.6e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF00893;locus_tag=Cj1173
gi|15791399|ref|NC_002163.1|	EMBL	gene	1101841	1102149	.	+	.	ID=gene-Cj1174;Name=Cj1174;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1174
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1101841	1102149	.	+	0	ID=cds-CAL35289.1;Parent=gene-Cj1174;Dbxref=EnsemblGenomes-Gn:Cj1174,EnsemblGenomes-Tr:CAL35289,GOA:Q0P982,InterPro:IPR000390,UniProtKB/TrEMBL:Q0P982,NCBI_GP:CAL35289.1;Name=CAL35289.1;Note=Original (2000) note: Cj1174%2C possible efflux protein%2C len: 102 aa%3B similar to many e.g. EBR_STAAU ethidium bromide resistance protein (107 aa)%2C fasta scores%3B opt: 228 z-score: 302.9 E(): 1.4e-09%2C 33.0%25 identity in 100 aa overlap. No Hp match. Contains Pfam match to entry PF00893 DUF7%2C Integral membrane protein. Also similar to Cj0309c (28.7%25 identity in 94 aa overlap)%3B~Updated (2006) note: Pfam domain PF00893 Small Multidrug Resistance protein identified within CDS. Also%2Cfour probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Some characterisation in Escherichia coli with acceptable identity score. Putative kept within product function. Additional paper (PMID:16048946) giving further information within Campylobacter spp. Functional classification - Drug/analogue sensitivity%3B~PMID:11566977%2C PMID:15919996%2C PMID:16048946;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1174;product=putative efflux protein (multidrug resistance protein);protein_id=CAL35289.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1101841	1102119	.	+	.	ID=id-Cj1174;Note=HMMPfam hit to PF00893%2C Small Multidrug Resistance protein%2C score 1.5e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF00893;locus_tag=Cj1174
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1101844	1101900	.	+	.	ID=id-Cj1174-2;Note=4 probable transmembrane helices predicted for Cj1174 by TMHMM2.0 at aa 2-20%2C 30-48%2C 55-77 and 82-101;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1174;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1101928	1101984	.	+	.	ID=id-Cj1174-2;Note=4 probable transmembrane helices predicted for Cj1174 by TMHMM2.0 at aa 2-20%2C 30-48%2C 55-77 and 82-101;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1174;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1102003	1102071	.	+	.	ID=id-Cj1174-2;Note=4 probable transmembrane helices predicted for Cj1174 by TMHMM2.0 at aa 2-20%2C 30-48%2C 55-77 and 82-101;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1174;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1102084	1102143	.	+	.	ID=id-Cj1174-2;Note=4 probable transmembrane helices predicted for Cj1174 by TMHMM2.0 at aa 2-20%2C 30-48%2C 55-77 and 82-101;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1174;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1102167	1103759	.	-	.	ID=gene-Cj1175c;Name=argS;gbkey=Gene;gene=argS;gene_biotype=protein_coding;locus_tag=Cj1175c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1102167	1103759	.	-	0	ID=cds-CAL35290.1;Parent=gene-Cj1175c;Dbxref=EnsemblGenomes-Gn:Cj1175c,EnsemblGenomes-Tr:CAL35290,GOA:Q9PNC0,InterPro:IPR001278,InterPro:IPR001412,InterPro:IPR005148,InterPro:IPR008909,InterPro:IPR009080,InterPro:IPR014729,PDB:3FNR,NCBI_GP:CAL35290.1;Name=CAL35290.1;Note=Original (2000) note: Cj1175c%2C argS%2C arginyl-tRNA synthetase%2C len: 530 aa%3B similar to many e.g. SYR_BACSU arginyl-tRNA synthetase (EC 6.1.1.19) (556 aa)%2C fasta scores%3B opt: 1206 z-score: 1360.5 E(): 0%2C 38.2%25 identity in 529 aa overlap. 51.1%25 identity to HP0319. Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature%2C and Pfam match to entry PF00750 tRNA-synt_1d%2CtRNA synthetases class I (R)%3B~Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:2183195;gbkey=CDS;gene=argS;inference=protein motif:Prosite:PS00178;locus_tag=Cj1175c;product=arginyl-tRNA synthetase;protein_id=CAL35290.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1102176	1102520	.	-	.	ID=id-Cj1175c;Note=HMMPfam hit to PF05746%2C DALR anticodon binding domain%2C score 9e-34;gbkey=misc_feature;gene=argS;inference=protein motif:Pfam:PF05746;locus_tag=Cj1175c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1102563	1103507	.	-	.	ID=id-Cj1175c-2;Note=HMMPfam hit to PF00750%2C tRNA synthetases class I (R)%2C score 4.9e-73;gbkey=misc_feature;gene=argS;inference=protein motif:Pfam:PF00750;locus_tag=Cj1175c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1103388	1103417	.	-	.	ID=id-Cj1175c-3;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=argS;inference=protein motif:Prosite:PS00178;locus_tag=Cj1175c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1103529	1103759	.	-	.	ID=id-Cj1175c-4;Note=HMMPfam hit to PF03485%2C Arginyl tRNA synthetase N terminal do%2C score 1.6e-26;gbkey=misc_feature;gene=argS;inference=protein motif:Pfam:PF03485;locus_tag=Cj1175c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1103771	1104010	.	-	.	ID=gene-Cj1176c;Name=tatA;gbkey=Gene;gene=tatA;gene_biotype=protein_coding;locus_tag=Cj1176c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1103771	1104010	.	-	0	ID=cds-CAL35291.1;Parent=gene-Cj1176c;Dbxref=EnsemblGenomes-Gn:Cj1176c,EnsemblGenomes-Tr:CAL35291,GOA:Q9PNB9,InterPro:IPR003369,InterPro:IPR006312,NCBI_GP:CAL35291.1;Name=CAL35291.1;Note=Original (2000) note: Cj1176c%2C unknown%2C len: 79 aa%3B similar to hypothetical proteins e.g. YY34_MYCTU MTCY49.34C (83 aa)%2C fasta scores%3B opt: 162 z-score: 221.6 E(): 4.8e-05%2C 42.9%25 identity in 56 aa overlap. 49.4%25 identity to HP0320%3B~Updated (2006) note: Pfam domain PF02416 mttA/Hcf106 family identified within CDS. Members of this protein family are involved in Sec independent translocation mechanism. Product function modified to more specific family member based on motif match. Characterisation has been carried out in Escherichia coli%2Cwith acceptable identity score. Product function uses homolog description. Functional classification - Protein and peptide secretion%3B~PMID:9649434%2C PMID:12427031%2C PMID:15571732%2CPMID:9546395%2C PMID:16027357;gbkey=CDS;gene=tatA;inference=protein motif:Pfam:PF02416;locus_tag=Cj1176c;product=Sec-independent protein translocase (TatA/E homolog);protein_id=CAL35291.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1103822	1103998	.	-	.	ID=id-Cj1176c;Note=HMMPfam hit to PF02416%2C mttA/Hcf106 family%2C score 3.9e-19;gbkey=misc_feature;gene=tatA;inference=protein motif:Pfam:PF02416;locus_tag=Cj1176c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1103942	1104001	.	-	.	ID=id-Cj1176c-2;Note=1 probable transmembrane helix predicted for Cj1176c by TMHMM2.0 at aa 4-23;gbkey=misc_feature;gene=tatA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1176c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1104012	1104635	.	-	.	ID=gene-Cj1177c;Name=gmk;gbkey=Gene;gene=gmk;gene_biotype=protein_coding;locus_tag=Cj1177c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1104012	1104635	.	-	0	ID=cds-CAL35292.1;Parent=gene-Cj1177c;Dbxref=EnsemblGenomes-Gn:Cj1177c,EnsemblGenomes-Tr:CAL35292,GOA:Q9PNB8,InterPro:IPR008144,InterPro:IPR008145,InterPro:IPR017665,InterPro:IPR020590,InterPro:IPR027417,NCBI_GP:CAL35292.1;Name=CAL35292.1;Note=Original (2000) note: Cj1177c%2C gmk%2C probable guanylate kinase%2C len: 207 aa%3B similar to many e.g. KGUA_ECOLI guanylate kinase (EC 2.7.4.8) (207 aa)%2C fasta scores%3B opt: 457 z-score: 508.4 E(): 5.1e-21%2C 41.8%25 identity in 194 aa overlap. 51.0%25 identity to HP0321. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2CPS00856 Guanylate kinase signature%2C and Pfam match to entry PF00625 Guanylate_kin%2C Guanylate kinase%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Purine ribonucleotide biosynthesis%3B~PMID:8390989;gbkey=CDS;gene=gmk;inference=protein motif:Prosite:PS00856;locus_tag=Cj1177c;product=guanylate kinase;protein_id=CAL35292.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1104198	1104515	.	-	.	ID=id-Cj1177c;Note=HMMPfam hit to PF00625%2C Guanylate kinase%2C score 2.1e-36;gbkey=misc_feature;gene=gmk;inference=protein motif:Pfam:PF00625;locus_tag=Cj1177c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1104465	1104518	.	-	.	ID=id-Cj1177c-2;Note=PS00856 Guanylate kinase signature;gbkey=misc_feature;gene=gmk;inference=protein motif:Prosite:PS00856;locus_tag=Cj1177c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1104579	1104602	.	-	.	ID=id-Cj1177c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=gmk;inference=protein motif:Prosite:PS00017;locus_tag=Cj1177c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1104632	1106260	.	-	.	ID=gene-Cj1178c;Name=Cj1178c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1178c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1104632	1106260	.	-	0	ID=cds-CAL35293.1;Parent=gene-Cj1178c;Dbxref=EnsemblGenomes-Gn:Cj1178c,EnsemblGenomes-Tr:CAL35293,UniProtKB/TrEMBL:Q0P978,NCBI_GP:CAL35293.1;Name=CAL35293.1;Note=Original (2000) note: Cj1178c%2C highly acidic protein%2C len: 542 aa%3B no Hp match. Very Asp- Glu- rich%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj1178c;product=highly acidic protein;protein_id=CAL35293.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1106317	1107084	.	-	.	ID=gene-Cj1179c;Name=fliR;gbkey=Gene;gene=fliR;gene_biotype=protein_coding;locus_tag=Cj1179c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1106317	1107084	.	-	0	ID=cds-CAL35294.1;Parent=gene-Cj1179c;Dbxref=EnsemblGenomes-Gn:Cj1179c,EnsemblGenomes-Tr:CAL35294,GOA:Q0P977,InterPro:IPR002010,InterPro:IPR006303,UniProtKB/TrEMBL:Q0P977,NCBI_GP:CAL35294.1;Name=CAL35294.1;Note=Original (2000) note: Cj1179c%2C fliR%2C probable flagellar biosynthetis protein%2C len: 255 aa%3B similar to many e.g. FLIR_BACSU flagellar biosynthetic protein FLIR (259 aa)%2C fatsa scores%3B opt: 508 z-score: 570.8 E(): 1.7e-24%2C 30.5%25 identity in 243 aa overlap. 39.0%25 identity to HP0173. Contains Pfam match to entry PF01311 Bac_export_1%2C Bacterial export proteins%2C family 1%3B~Updated (2006) note: Seven probable transmembrane helices predicted by TMHMM2.0. TIGRFAM also identfied flagellar biosynthetic protein FliR. Further support given to product function. Characterised in Bacillus subtilis with marginal identity score. Appropriate motifs present. Putative not added to product function. Additional paper (PMID:16369037) giving information within Campylobacter. Functional classification - Surface structures%3B~PMID:8299954%2C PMID:16369037%2C PMID:8282695;gbkey=CDS;gene=fliR;inference=protein motif:TMHMM:2.0;locus_tag=Cj1179c;product=flagellar biosynthetic protein;protein_id=CAL35294.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1106386	1106454	.	-	.	ID=id-Cj1179c;Note=7 probable transmembrane helices predicted for Cj1179c by TMHMM2.0 at aa 13-32%2C 37-59%2C 72-94%2C 116-138%2C143-162%2C 177-199 and 211-233;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0;locus_tag=Cj1179c;part=1/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1106488	1106556	.	-	.	ID=id-Cj1179c;Note=7 probable transmembrane helices predicted for Cj1179c by TMHMM2.0 at aa 13-32%2C 37-59%2C 72-94%2C 116-138%2C143-162%2C 177-199 and 211-233;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0;locus_tag=Cj1179c;part=2/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1106599	1106658	.	-	.	ID=id-Cj1179c;Note=7 probable transmembrane helices predicted for Cj1179c by TMHMM2.0 at aa 13-32%2C 37-59%2C 72-94%2C 116-138%2C143-162%2C 177-199 and 211-233;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0;locus_tag=Cj1179c;part=3/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1106671	1106739	.	-	.	ID=id-Cj1179c;Note=7 probable transmembrane helices predicted for Cj1179c by TMHMM2.0 at aa 13-32%2C 37-59%2C 72-94%2C 116-138%2C143-162%2C 177-199 and 211-233;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0;locus_tag=Cj1179c;part=4/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1106803	1106871	.	-	.	ID=id-Cj1179c;Note=7 probable transmembrane helices predicted for Cj1179c by TMHMM2.0 at aa 13-32%2C 37-59%2C 72-94%2C 116-138%2C143-162%2C 177-199 and 211-233;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0;locus_tag=Cj1179c;part=5/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1106908	1106976	.	-	.	ID=id-Cj1179c;Note=7 probable transmembrane helices predicted for Cj1179c by TMHMM2.0 at aa 13-32%2C 37-59%2C 72-94%2C 116-138%2C143-162%2C 177-199 and 211-233;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0;locus_tag=Cj1179c;part=6/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1106989	1107048	.	-	.	ID=id-Cj1179c;Note=7 probable transmembrane helices predicted for Cj1179c by TMHMM2.0 at aa 13-32%2C 37-59%2C 72-94%2C 116-138%2C143-162%2C 177-199 and 211-233;gbkey=misc_feature;gene=fliR;inference=protein motif:TMHMM:2.0;locus_tag=Cj1179c;part=7/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1106335	1107057	.	-	.	ID=id-Cj1179c-2;Note=HMMPfam hit to PF01311%2C Bacterial export proteins%2Cfamily%2C score 9e-53;gbkey=misc_feature;gene=fliR;inference=protein motif:Pfam:PF01311;locus_tag=Cj1179c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1107071	1107706	.	-	.	ID=gene-Cj1180c;Name=Cj1180c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1180c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1107071	1107706	.	-	0	ID=cds-CAL35295.1;Parent=gene-Cj1180c;Dbxref=EnsemblGenomes-Gn:Cj1180c,EnsemblGenomes-Tr:CAL35295,GOA:Q0P976,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P976,NCBI_GP:CAL35295.1;Name=CAL35295.1;Note=Original (2000) note: Cj1180c%2C probable ABC transporter ATP binding protein%2C len: 211 aa%3B similar to many e.g. YBBA_ECOLI hypothetical ABC transporter ATP-binding protein (228 aa)%2C fasta scores%3B opt: 457 z-score: 554.6 E(): 1.4e-23%2C 39.7%25 identity in 199 aa overlap. 49.5%25 identity to HP0179. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Similar to many identified as lipoprotein-releasing system ATP-binding protein. Putative kept within product function. Functional classification -Transport/binding proteins - Other%3B~PMID:10783239%2C PMID:11844772%2C PMID:12823819;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj1180c;product=putative ABC transporter ATP-binding protein;protein_id=CAL35295.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1107083	1107625	.	-	.	ID=id-Cj1180c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 5.1e-46;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj1180c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1107266	1107310	.	-	.	ID=id-Cj1180c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj1180c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1107581	1107604	.	-	.	ID=id-Cj1180c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1180c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1107719	1108792	.	-	.	ID=gene-Cj1181c;Name=tsf;gbkey=Gene;gene=tsf;gene_biotype=protein_coding;locus_tag=Cj1181c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1107719	1108792	.	-	0	ID=cds-CAL35296.1;Parent=gene-Cj1181c;Dbxref=EnsemblGenomes-Gn:Cj1181c,EnsemblGenomes-Tr:CAL35296,GOA:Q9PNB4,InterPro:IPR000449,InterPro:IPR001816,InterPro:IPR009060,InterPro:IPR014039,InterPro:IPR018101,NCBI_GP:CAL35296.1;Name=CAL35296.1;Note=Original (2000) note: Cj1181c%2C tsf%2C probable elongation factor TS%2C len: 357 aa%3B similar to many e.g. EFTS_BACSU elongation factor TS (292 aa)%2C fasta scores%3B opt: 587 z-score: 634.6 E(): 4.7e-28%2C 38.0%25 identity in 355 aa overlap. 54.9%25 identity to HP1555. Contains PS01126 and PS01127 Elongation factor Ts signatures 1 and 2%2C and Pfam match to entry PF00889 EF_TS%2C Elongation factor TS%3B~Updated (2006) note: Paper identified linking protein to glycoprotein (PMID:12186869). Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Protein translation and modification%3B~PMID:9468511%2C PMID:12186869;gbkey=CDS;gene=tsf;inference=protein motif:Prosite:PS01127;locus_tag=Cj1181c;product=elongation factor TS;protein_id=CAL35296.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1107773	1108624	.	-	.	ID=id-Cj1181c;Note=HMMPfam hit to PF00889%2C Elongation factor TS%2C score 2.1e-78;gbkey=misc_feature;gene=tsf;inference=protein motif:Pfam:PF00889;locus_tag=Cj1181c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1108532	1108564	.	-	.	ID=id-Cj1181c-2;Note=PS01127 Elongation factor Ts signature 2;gbkey=misc_feature;gene=tsf;inference=protein motif:Prosite:PS01127;locus_tag=Cj1181c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1108661	1108783	.	-	.	ID=id-Cj1181c-3;Note=HMMPfam hit to PF00627%2C UBA/TS-N domain%2C score 3e-11;gbkey=misc_feature;gene=tsf;inference=protein motif:Pfam:PF00627;locus_tag=Cj1181c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1108712	1108759	.	-	.	ID=id-Cj1181c-4;Note=PS01126 Elongation factor Ts signature 1;gbkey=misc_feature;gene=tsf;inference=protein motif:Prosite:PS01126;locus_tag=Cj1181c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1108792	1109583	.	-	.	ID=gene-Cj1182c;Name=rpsB;gbkey=Gene;gene=rpsB;gene_biotype=protein_coding;locus_tag=Cj1182c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1108792	1109583	.	-	0	ID=cds-CAL35297.1;Parent=gene-Cj1182c;Dbxref=EnsemblGenomes-Gn:Cj1182c,EnsemblGenomes-Tr:CAL35297,GOA:Q9PNB3,InterPro:IPR001865,InterPro:IPR005706,InterPro:IPR018130,InterPro:IPR023591,NCBI_GP:CAL35297.1;Name=CAL35297.1;Note=Original (2000) note: Cj1182c%2C rpsB%2C 30S ribosomal protein S2%2C len: 263 aa%3B highly similar to many e.g. RS2_BACSU 30S ribosomal protein S2 (245 aa)%2C fasta scores%3B opt: 886 z-score: 997.3 E(): 0%2C 56.1%25 identity in 237 aa overlap. 69.1%25 identity to HP1554. Contains PS00962 and PS00963 Ribosomal protein S2 signatures 1 and 2%2C and Pfam match to entry PF00318 S2%2C Ribosomal protein S2%3B~Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score%2C so putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:6806564;gbkey=CDS;gene=rpsB;inference=protein motif:Prosite:PS00963;locus_tag=Cj1182c;product=30S ribosomal protein S2;protein_id=CAL35297.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1108915	1109565	.	-	.	ID=id-Cj1182c;Note=HMMPfam hit to PF00318%2C Ribosomal protein S2%2C score 1.3e-104;gbkey=misc_feature;gene=rpsB;inference=protein motif:Pfam:PF00318;locus_tag=Cj1182c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1109044	1109118	.	-	.	ID=id-Cj1182c-2;Note=PS00963 Ribosomal protein S2 signature 2;gbkey=misc_feature;gene=rpsB;inference=protein motif:Prosite:PS00963;locus_tag=Cj1182c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1109539	1109574	.	-	.	ID=id-Cj1182c-3;Note=PS00962 Ribosomal protein S2 signature 1;gbkey=misc_feature;gene=rpsB;inference=protein motif:Prosite:PS00962;locus_tag=Cj1182c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1109699	1110862	.	-	.	ID=gene-Cj1183c;Name=cfa;gbkey=Gene;gene=cfa;gene_biotype=protein_coding;locus_tag=Cj1183c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1109699	1110862	.	-	0	ID=cds-CAL35298.1;Parent=gene-Cj1183c;Dbxref=EnsemblGenomes-Gn:Cj1183c,EnsemblGenomes-Tr:CAL35298,GOA:Q0P973,InterPro:IPR003333,InterPro:IPR029063,UniProtKB/TrEMBL:Q0P973,NCBI_GP:CAL35298.1;Name=CAL35298.1;Note=Original (2000) note: Cj1183c%2C cfa%2C probable cyclopropane-fatty-acyl-phospholipid synthase%2C len: 387 aa%3B CFA_ECOLI cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) (381 aa)%2C fasta scores%3B opt: 721 z-score: 802.3 E(): 0%2C 38.7%25 identity in 362 aa overlap. 62.1%25 identity to HP0416%3B~Updated (2006) note: Pfam domain PF02353 Cyclopropane-fatty-acyl-phosphol lipid synthase identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score. Appropiate motifs present. Putative removed from product function. Functional classification - Fatty acid biosynthesis%3B~PMID:1445840;gbkey=CDS;gene=cfa;inference=protein motif:Pfam:PF02353;locus_tag=Cj1183c;product=cyclopropane-fatty-acyl-phospholipid synthase;protein_id=CAL35298.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1109747	1110226	.	-	.	ID=id-Cj1183c;Note=HMMPfam hit to PF02353%2CCyclopropane-fatty-acyl-phospholipid synthas%2C score 7.3e-83;gbkey=misc_feature;gene=cfa;inference=protein motif:Pfam:PF02353;locus_tag=Cj1183c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1110990	1112114	.	-	.	ID=gene-Cj1184c;Name=petC;gbkey=Gene;gene=petC;gene_biotype=protein_coding;locus_tag=Cj1184c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1110990	1112114	.	-	0	ID=cds-CAL35299.1;Parent=gene-Cj1184c;Dbxref=EnsemblGenomes-Gn:Cj1184c,EnsemblGenomes-Tr:CAL35299,GOA:Q0P972,InterPro:IPR002326,InterPro:IPR003088,InterPro:IPR009056,InterPro:IPR021195,UniProtKB/TrEMBL:Q0P972,NCBI_GP:CAL35299.1;Name=CAL35299.1;Note=Original (2000) note: Cj1184c%2C petC%2C possible ubiquinol-cytochrome C reductase cytochrome C subunit%2Clen: 374 aa%3B some similarity to e.g. CYC_TETPY cytochrome C (109 aa)%2C fasta scores%3B opt: 124 z-score: 145.5 E(): 0.83%2C 25.6%25 identity in 121 aa overlap. 36.4%25 identity to HP1538. Contains Pfam match to entry PF00034 cytochrome_c%2CCytochrome c%2C probable N-terminal signal sequence%2C and possible membrane anchor at C-terminus%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Specific characterisation with acceptable identity score not carried out yet%2C so putative kept in product function. Literature search identified paper giving further clues to functionality within Campylobacter. Functional classification - Energy metabolism - Electron transport%3B~PMID:16041056;gbkey=CDS;gene=petC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1184c;product=putative ubiquinol-cytochrome C reductase cytochrome C subunit;protein_id=CAL35299.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1111020	1111079	.	-	.	ID=id-Cj1184c;Note=2 probable transmembrane helices predicted for Cj1184c by TMHMM2.0 at aa 7-29 and 346-365;gbkey=misc_feature;gene=petC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1184c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112028	1112096	.	-	.	ID=id-Cj1184c;Note=2 probable transmembrane helices predicted for Cj1184c by TMHMM2.0 at aa 7-29 and 346-365;gbkey=misc_feature;gene=petC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1184c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1111491	1111799	.	-	.	ID=id-Cj1184c-2;Note=HMMPfam hit to PF00034%2C Cytochrome c%2C score 0.0076;gbkey=misc_feature;gene=petC;inference=protein motif:Pfam:PF00034;locus_tag=Cj1184c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112103	1112114	.	-	.	ID=id-Cj1184c-3;Note=PS00228 Tubulin-beta mRNA autoregulation signal;gbkey=misc_feature;gene=petC;inference=protein motif:Prosite:PS00228;locus_tag=Cj1184c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1112111	1113361	.	-	.	ID=gene-Cj1185c;Name=petB;gbkey=Gene;gene=petB;gene_biotype=protein_coding;locus_tag=Cj1185c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1112111	1113361	.	-	0	ID=cds-CAL35300.1;Parent=gene-Cj1185c;Dbxref=EnsemblGenomes-Gn:Cj1185c,EnsemblGenomes-Tr:CAL35300,GOA:Q0P971,InterPro:IPR005797,InterPro:IPR005798,InterPro:IPR016174,InterPro:IPR027387,UniProtKB/TrEMBL:Q0P971,NCBI_GP:CAL35300.1;Name=CAL35300.1;Note=Original (2000) note: Cj1185c%2C petB%2C probable ubiquinol-cytochrome C reductase cytochrome B subunit%2Clen: 416 aa%3B similar to e.g. CYB_RHOSH cytochrome B (EC 1.10.2.2) (444 aa)%2C fasta scores%3B opt: 1023 z-score: 1190.8 E(): 0%2C 40.4%25 identity in 416 aa overlap. 70.9%25 identity to HP1539%3B Contains PS00193 Cytochrome b/b6 Qo site signature%2C Pfam match to entry PF00033 cytochrome_b_N%2C Cytochrome b(N-terminal)/b6/petB%2C and Pfam match to entry PF00032 cytochrome_b_C%2C Cytochrome b(C-terminal)/b6/petD%3B~Updated (2006) note: Ten probable transmembrane helices predicted by TMHMM2.0. Specific characterisation with acceptable identity score carried out in Rhodobacter sphaeroides. Putative kept within product function. Literature search identified paper (PMID:16041056) giving further clues to functionality within Campylobacter. Functional classification - Energy metabolism - Electron transport%3B~PMID:2176595%2C PMID:1645718%2C PMID:16041056;gbkey=CDS;gene=petB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1185c;product=putative ubiquinol-cytochrome C reductase cytochrome B subunit;protein_id=CAL35300.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112138	1112206	.	-	.	ID=id-Cj1185c;Note=10 probable transmembrane helices predicted for Cj1185c by TMHMM2.0 at aa 39-61%2C 95-117%2C 124-146%2C 156-178%2C191-213%2C 258-280%2C 301-320%2C 325-344%2C 357-376 and 386-408;gbkey=misc_feature;gene=petB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1185c;part=1/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112234	1112293	.	-	.	ID=id-Cj1185c;Note=10 probable transmembrane helices predicted for Cj1185c by TMHMM2.0 at aa 39-61%2C 95-117%2C 124-146%2C 156-178%2C191-213%2C 258-280%2C 301-320%2C 325-344%2C 357-376 and 386-408;gbkey=misc_feature;gene=petB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1185c;part=2/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112330	1112389	.	-	.	ID=id-Cj1185c;Note=10 probable transmembrane helices predicted for Cj1185c by TMHMM2.0 at aa 39-61%2C 95-117%2C 124-146%2C 156-178%2C191-213%2C 258-280%2C 301-320%2C 325-344%2C 357-376 and 386-408;gbkey=misc_feature;gene=petB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1185c;part=3/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112402	1112461	.	-	.	ID=id-Cj1185c;Note=10 probable transmembrane helices predicted for Cj1185c by TMHMM2.0 at aa 39-61%2C 95-117%2C 124-146%2C 156-178%2C191-213%2C 258-280%2C 301-320%2C 325-344%2C 357-376 and 386-408;gbkey=misc_feature;gene=petB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1185c;part=4/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112522	1112590	.	-	.	ID=id-Cj1185c;Note=10 probable transmembrane helices predicted for Cj1185c by TMHMM2.0 at aa 39-61%2C 95-117%2C 124-146%2C 156-178%2C191-213%2C 258-280%2C 301-320%2C 325-344%2C 357-376 and 386-408;gbkey=misc_feature;gene=petB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1185c;part=5/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112723	1112791	.	-	.	ID=id-Cj1185c;Note=10 probable transmembrane helices predicted for Cj1185c by TMHMM2.0 at aa 39-61%2C 95-117%2C 124-146%2C 156-178%2C191-213%2C 258-280%2C 301-320%2C 325-344%2C 357-376 and 386-408;gbkey=misc_feature;gene=petB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1185c;part=6/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112828	1112896	.	-	.	ID=id-Cj1185c;Note=10 probable transmembrane helices predicted for Cj1185c by TMHMM2.0 at aa 39-61%2C 95-117%2C 124-146%2C 156-178%2C191-213%2C 258-280%2C 301-320%2C 325-344%2C 357-376 and 386-408;gbkey=misc_feature;gene=petB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1185c;part=7/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112924	1112992	.	-	.	ID=id-Cj1185c;Note=10 probable transmembrane helices predicted for Cj1185c by TMHMM2.0 at aa 39-61%2C 95-117%2C 124-146%2C 156-178%2C191-213%2C 258-280%2C 301-320%2C 325-344%2C 357-376 and 386-408;gbkey=misc_feature;gene=petB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1185c;part=8/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1113011	1113079	.	-	.	ID=id-Cj1185c;Note=10 probable transmembrane helices predicted for Cj1185c by TMHMM2.0 at aa 39-61%2C 95-117%2C 124-146%2C 156-178%2C191-213%2C 258-280%2C 301-320%2C 325-344%2C 357-376 and 386-408;gbkey=misc_feature;gene=petB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1185c;part=9/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1113179	1113247	.	-	.	ID=id-Cj1185c;Note=10 probable transmembrane helices predicted for Cj1185c by TMHMM2.0 at aa 39-61%2C 95-117%2C 124-146%2C 156-178%2C191-213%2C 258-280%2C 301-320%2C 325-344%2C 357-376 and 386-408;gbkey=misc_feature;gene=petB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1185c;part=10/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112192	1112503	.	-	.	ID=id-Cj1185c-2;Note=HMMPfam hit to PF00032%2C Cytochrome b(C-terminal)/b6/petD%2C score 2.5e-06;gbkey=misc_feature;gene=petB;inference=protein motif:Pfam:PF00032;locus_tag=Cj1185c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112213	1112230	.	-	.	ID=id-Cj1185c-3;Note=PS00343 Gram-positive cocci surface proteins 'anchoring' hexapeptide;gbkey=misc_feature;gene=petB;inference=protein motif:Prosite:PS00343;locus_tag=Cj1185c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112450	1112467	.	-	.	ID=id-Cj1185c-4;Note=PS00193 Cytochrome b/b6 Qo site signature;gbkey=misc_feature;gene=petB;inference=protein motif:Prosite:PS00193;locus_tag=Cj1185c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1112708	1113319	.	-	.	ID=id-Cj1185c-5;Note=HMMPfam hit to PF00033%2C Cytochrome b(N-terminal)/b6/petB%2C score 2.9e-61;gbkey=misc_feature;gene=petB;inference=protein motif:Pfam:PF00033;locus_tag=Cj1185c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1113363	1113866	.	-	.	ID=gene-Cj1186c;Name=petA;gbkey=Gene;gene=petA;gene_biotype=protein_coding;locus_tag=Cj1186c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1113363	1113866	.	-	0	ID=cds-CAL35301.1;Parent=gene-Cj1186c;Dbxref=EnsemblGenomes-Gn:Cj1186c,EnsemblGenomes-Tr:CAL35301,GOA:Q0P970,InterPro:IPR005805,InterPro:IPR006317,InterPro:IPR014349,InterPro:IPR017941,UniProtKB/TrEMBL:Q0P970,NCBI_GP:CAL35301.1;Name=CAL35301.1;Note=Original (2000) note: Cj1186c%2C petA%2C probable ubiquinol-cytochrome C reductase iron-sulfur subunit%2C len: 167 aa%3B similar to e.g. UCRI_BRAJA ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) (176 aa)%2Cfatsa scores%3B opt: 236 z-score: 291.2 E(): 6.4e-09%2C 39.2%25 identity in 171 aa overlap. 56.8%25 identity to HP1540. Contains PS00199 Rieske iron-sulfur protein signature 1%2Cand Pfam match to entry PF00355 Rieske%2C Rieske iron-sulfur protein%3B~Updated (2006) note: No specific characterisation with acceptable identity score%2C so puatative kept within product function. Literature search identified paper giving further clues to functionality within Campylobacter. Functional classification - Energy metabolism - Electron transport%3B~PMID:16041056;gbkey=CDS;gene=petA;inference=protein motif:Prosite:PS00199;locus_tag=Cj1186c;product=putative ubiquinol-cytochrome C reductase iron-sulfur subunit;protein_id=CAL35301.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1113420	1113671	.	-	.	ID=id-Cj1186c;Note=HMMPfam hit to PF00355%2C Rieske [2Fe-2S] domain%2Cscore 7.4e-08;gbkey=misc_feature;gene=petA;inference=protein motif:Pfam:PF00355;locus_tag=Cj1186c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1113552	1113572	.	-	.	ID=id-Cj1186c-2;Note=PS00199 Rieske iron-sulfur protein signature 1;gbkey=misc_feature;gene=petA;inference=protein motif:Prosite:PS00199;locus_tag=Cj1186c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1113780	1113839	.	-	.	ID=id-Cj1186c-3;Note=1 probable transmembrane helix predicted for Cj1186c by TMHMM2.0 at aa 10-29;gbkey=misc_feature;gene=petA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1186c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1113956	1115242	.	-	.	ID=gene-Cj1187c;Name=arsB;gbkey=Gene;gene=arsB;gene_biotype=protein_coding;locus_tag=Cj1187c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1113956	1115242	.	-	0	ID=cds-CAL35302.1;Parent=gene-Cj1187c;Dbxref=EnsemblGenomes-Gn:Cj1187c,EnsemblGenomes-Tr:CAL35302,GOA:Q0P969,InterPro:IPR000802,UniProtKB/TrEMBL:Q0P969,NCBI_GP:CAL35302.1;Name=CAL35302.1;Note=Original (2000) note: Cj1187c%2C arsB%2C possible arsenical pump membrane protein%2C len: 428 aa%3B simlar to many e.g. ARSB_ECOLI arsenical pump membrane protein (429 aa)%2C fasta scores%3B opt: 805 z-score: 920.7 E(): 0%2C 33.5%25 identity in 433 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02040 Arsenical pump membrane protein identified within CDS. Also%2C eleven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised in Escherichia coli with marginal identity score. Appropriate motifs present. Putative removed from product function. Functional classification - Drug/analogue sensitivity%3B~PMID:7721697%2C PMID:1688427;gbkey=CDS;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;product=arsenical pump membrane protein;protein_id=CAL35302.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1113962	1114021	.	-	.	ID=id-Cj1187c;Note=11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42%2C 57-79%2C 103-134%2C 144-166%2C189-211%2C 226-248%2C 255-271%2C 281-303%2C 324-346%2C 366-395 and 408-427;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;part=1/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1114058	1114147	.	-	.	ID=id-Cj1187c;Note=11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42%2C 57-79%2C 103-134%2C 144-166%2C189-211%2C 226-248%2C 255-271%2C 281-303%2C 324-346%2C 366-395 and 408-427;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;part=2/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1114205	1114273	.	-	.	ID=id-Cj1187c;Note=11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42%2C 57-79%2C 103-134%2C 144-166%2C189-211%2C 226-248%2C 255-271%2C 281-303%2C 324-346%2C 366-395 and 408-427;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;part=3/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1114334	1114402	.	-	.	ID=id-Cj1187c;Note=11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42%2C 57-79%2C 103-134%2C 144-166%2C189-211%2C 226-248%2C 255-271%2C 281-303%2C 324-346%2C 366-395 and 408-427;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;part=4/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1114430	1114480	.	-	.	ID=id-Cj1187c;Note=11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42%2C 57-79%2C 103-134%2C 144-166%2C189-211%2C 226-248%2C 255-271%2C 281-303%2C 324-346%2C 366-395 and 408-427;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;part=5/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1114499	1114567	.	-	.	ID=id-Cj1187c;Note=11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42%2C 57-79%2C 103-134%2C 144-166%2C189-211%2C 226-248%2C 255-271%2C 281-303%2C 324-346%2C 366-395 and 408-427;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;part=6/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1114610	1114678	.	-	.	ID=id-Cj1187c;Note=11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42%2C 57-79%2C 103-134%2C 144-166%2C189-211%2C 226-248%2C 255-271%2C 281-303%2C 324-346%2C 366-395 and 408-427;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;part=7/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1114745	1114813	.	-	.	ID=id-Cj1187c;Note=11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42%2C 57-79%2C 103-134%2C 144-166%2C189-211%2C 226-248%2C 255-271%2C 281-303%2C 324-346%2C 366-395 and 408-427;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;part=8/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1114841	1114936	.	-	.	ID=id-Cj1187c;Note=11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42%2C 57-79%2C 103-134%2C 144-166%2C189-211%2C 226-248%2C 255-271%2C 281-303%2C 324-346%2C 366-395 and 408-427;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;part=9/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1115006	1115074	.	-	.	ID=id-Cj1187c;Note=11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42%2C 57-79%2C 103-134%2C 144-166%2C189-211%2C 226-248%2C 255-271%2C 281-303%2C 324-346%2C 366-395 and 408-427;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;part=10/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1115117	1115185	.	-	.	ID=id-Cj1187c;Note=11 probable transmembrane helices predicted for Cj1187c by TMHMM2.0 at aa 20-42%2C 57-79%2C 103-134%2C 144-166%2C189-211%2C 226-248%2C 255-271%2C 281-303%2C 324-346%2C 366-395 and 408-427;gbkey=misc_feature;gene=arsB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1187c;part=11/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1113959	1115239	.	-	.	ID=id-Cj1187c-2;Note=HMMPfam hit to PF02040%2C Arsenical pump membrane protein%2C score 7.3e-69;gbkey=misc_feature;gene=arsB;inference=protein motif:Pfam:PF02040;locus_tag=Cj1187c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1115243	1117102	.	-	.	ID=gene-Cj1188c;Name=gidA;gbkey=Gene;gene=gidA;gene_biotype=protein_coding;locus_tag=Cj1188c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1115243	1117102	.	-	0	ID=cds-CAL35303.1;Parent=gene-Cj1188c;Dbxref=EnsemblGenomes-Gn:Cj1188c,EnsemblGenomes-Tr:CAL35303,GOA:Q9PNA7,InterPro:IPR002218,InterPro:IPR004416,InterPro:IPR020595,InterPro:IPR026904,NCBI_GP:CAL35303.1;Name=CAL35303.1;Note=Original (2000) note: Cj1188c%2C gidA%2C glucose inhibited division protein A homolog%2C len: 619 aa%3B highly similar to many e.g. GIDA_ECOLI glucose inhibited division protein A (629 aa)%2C fasta scores%3B opt: 1994 z-score: 2233.7 E(): 0%2C 51.7%25 identity in 619 aa overlap. 58.1%25 identity to HP0213. Contains PS01280 Glucose inhibited division protein A family signature 1%2C and Pfam match to entry PF01134 GIDA%2C Glucose inhibited division protein A%3B~Updated (2006) note: Literature search identified papers giving further information on product function. Product function and gene name updated. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:11544186%2C PMID:9603884%2C PMID:14993678 PMID:14742556;gbkey=CDS;gene=gidA;inference=protein motif:Prosite:PS01280;locus_tag=Cj1188c;product=tRNA uridine 5-carboxymethylaminomethyl modification enzyme;protein_id=CAL35303.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1115903	1117096	.	-	.	ID=id-Cj1188c;Note=HMMPfam hit to PF01134%2C Glucose inhibited division protein A%2C score 4e-226;gbkey=misc_feature;gene=gidA;inference=protein motif:Pfam:PF01134;locus_tag=Cj1188c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1116260	1116304	.	-	.	ID=id-Cj1188c-2;Note=PS01280 Glucose inhibited division protein A family signature 1;gbkey=misc_feature;gene=gidA;inference=protein motif:Prosite:PS01280;locus_tag=Cj1188c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1117190	1117687	.	-	.	ID=gene-Cj1189c;Name=cetB;gbkey=Gene;gene=cetB;gene_biotype=protein_coding;locus_tag=Cj1189c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1117190	1117687	.	-	0	ID=cds-CAL35304.1;Parent=gene-Cj1189c;Dbxref=EnsemblGenomes-Gn:Cj1189c,EnsemblGenomes-Tr:CAL35304,GOA:Q0P967,InterPro:IPR000014,UniProtKB/TrEMBL:Q0P967,NCBI_GP:CAL35304.1;Name=CAL35304.1;Note=Original (2000) note: Cj1189c%2C possible signal-transduction sensor protein%2C len: 165 aa%3B similar to N-terminus of genes involved in oxygen-sensing e.g. AER_ECOLI aerotaxis receptor (506 aa)%2C fasta scores%3B opt: 342 z-score: 407.5 E(): 2.1e-15%2C 36.4%25 identity in 140 aa overlap%2C and NIFL_AZOVI nitrogen fixation regulatory protein (519 aa)%2C fasta scores%3B opt: 175 z-score: 212.5 E(): 0.00015%2C 33.6%25 identity in 110 aa overlap. No Hp match. Also similar to Cj1191c (63.4%25 identity in 161 aa overlap)%3B~Updated (2006) note: Pfam domain PF00989 PAS fold identified within CDS. PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. Prosite domain PS50112 PAS%2C PAS repeat profile identified within CDS. Further support given to product function. Characterisation work carried out in Campylobacter jejuni. Product function updated. Literature search identified paper giving further information on product functionality (PMID:11298288). Gene name added. Functional classification - Signal transduction%3B~PMID:9380671%2C PMID:11298288;gbkey=CDS;gene=cetB;inference=protein motif:Prosite:PS50112;locus_tag=Cj1189c;product=bipartate energy taxis response protein cetB;protein_id=CAL35304.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1117705	1119084	.	-	.	ID=gene-Cj1190c;Name=cetA;gbkey=Gene;gene=cetA;gene_biotype=protein_coding;locus_tag=Cj1190c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1117705	1119084	.	-	0	ID=cds-CAL35305.1;Parent=gene-Cj1190c;Dbxref=EnsemblGenomes-Gn:Cj1190c,EnsemblGenomes-Tr:CAL35305,GOA:Q0P966,InterPro:IPR004089,InterPro:IPR004090,UniProtKB/TrEMBL:Q0P966,NCBI_GP:CAL35305.1;Name=CAL35305.1;Note=Original (2000) note: Cj1190c%2C probable MCP-domain signal transduction protein%2C len: 459 aa%3B similar to many e.g. TLPC_BACSU methyl-accepting chemotaxis protein TLPC (573 aa)%2C fasta scores%3B opt: 371 z-score: 397.9 E(): 7.3e-15%2C 26.2%25 identity in 404 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%2C and probable membrane spanning domain at N-terminus%3B~Updated (2006) note: Characterisation work carried out in Campylobacter jejuni. Product function updated. Literature search identified paper giving further information to product functionality (PMID:11298288). New gene name has been added. Functional classification -Signal transduction%3B~PMID:8188684%2C PMID:11298288;gbkey=CDS;gene=cetA;inference=protein motif:Pfam:PF00015;locus_tag=Cj1190c;product=bipartate energy taxis response protein cetA;protein_id=CAL35305.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1118005	1118595	.	-	.	ID=id-Cj1190c;Note=HMMPfam hit to PF00015%2C Methyl-accepting chemotaxis protein (MCP) s%2C score 2.6e-19;gbkey=misc_feature;gene=cetA;inference=protein motif:Pfam:PF00015;locus_tag=Cj1190c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1118962	1119066	.	-	.	ID=id-Cj1190c-2;Note=1 probable transmembrane helix predicted for Cj1190c by TMHMM2.0 at aa 7-41;gbkey=misc_feature;gene=cetA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1190c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1119205	1119699	.	-	.	ID=gene-Cj1191c;Name=Cj1191c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1191c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1119205	1119699	.	-	0	ID=cds-CAL35306.1;Parent=gene-Cj1191c;Dbxref=EnsemblGenomes-Gn:Cj1191c,EnsemblGenomes-Tr:CAL35306,GOA:Q0P965,InterPro:IPR000014,UniProtKB/TrEMBL:Q0P965,NCBI_GP:CAL35306.1;Name=CAL35306.1;Note=Original (2000) note: Cj1191c%2C possible signal-transduction sensor protein%2C len: 164 aa%3B similar to N-terminus of genes involved in oxygen-sensing e.g. AER_ECOLI aerotaxis receptor (506 aa)%2C fasta scores%3B opt: 297 z-score: 373.5 E(): 1.7e-13%2C 34.3%25 identity in 134 aa overlap%2C and NIFL_AZOVI nitrogen fixation regulatory protein (519 aa)%2C fasta scores%3B opt: 178 z-score: 226.6 E(): 2.5e-05%2C 33.0%25 identity in 103 aa overlap. No Hp match. Also similar to Cj1189c (63.4%25 identity in 161 aa overlap)%3B~Updated (2006) note: Pfam domain PF00989 PAS fold identified within CDS. PAS domains are involved in many signalling proteins where they are used as a signal sensor domain. Prosite domain PS50112 PAS%2C PAS repeat profile identified within CDS. Further support given to product function. Product function modified to include motif information. Literature search identified paper giving further clues to product functionality (PMID:11298288). Functional classification - Signal transduction%3B~PMID:9380671%2C PMID:11298288;gbkey=CDS;inference=protein motif:Prosite:PS50112;locus_tag=Cj1191c;product=putative PAS domain containing signal-transduction sensor protein;protein_id=CAL35306.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1119968	1121344	.	+	.	ID=gene-Cj1192;Name=dctA;gbkey=Gene;gene=dctA;gene_biotype=protein_coding;locus_tag=Cj1192
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1119968	1121344	.	+	0	ID=cds-CAL35307.1;Parent=gene-Cj1192;Dbxref=EnsemblGenomes-Gn:Cj1192,EnsemblGenomes-Tr:CAL35307,GOA:Q0P964,InterPro:IPR001991,UniProtKB/TrEMBL:Q0P964,NCBI_GP:CAL35307.1;Name=CAL35307.1;Note=Original (2000) note: Cj1192%2C dctA%2C probable C4-dicarboxylate transport protein%2C len: 458 aa%3B similar to many e.g. DCTA_ECOLI C4-dicarboxylate transport protein (428 aa)%2C fasta scores%3B opt: 1073 z-score: 1222.5 E(): 0%2C45.3%25 identity in 433 aa overlap. No Hp match. Contains Pfam match to entry PF00375 SDF%2C Sodium:dicarboxylate symporter family%3B~Updated (2006) note: Eight probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised in Escherichia coli with acceptable identity score. Putative kept within product function. Functional classification - Carbohydrates%2Corganic acids and alcohols%3B~PMID:8955389%2C PMID:10482502%2C PMID:15919996%2CPMID:11803016;gbkey=CDS;gene=dctA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1192;product=putative C4-dicarboxylate transport protein;protein_id=CAL35307.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1120022	1120090	.	+	.	ID=id-Cj1192;Note=8 probable transmembrane helices predicted for Cj1192 by TMHMM2.0 at aa 19-41%2C 56-78%2C 91-113%2C 168-187%2C210-232%2C 242-264%2C 351-373 and 388-407;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1192;part=1/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1120133	1120201	.	+	.	ID=id-Cj1192;Note=8 probable transmembrane helices predicted for Cj1192 by TMHMM2.0 at aa 19-41%2C 56-78%2C 91-113%2C 168-187%2C210-232%2C 242-264%2C 351-373 and 388-407;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1192;part=2/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1120238	1120306	.	+	.	ID=id-Cj1192;Note=8 probable transmembrane helices predicted for Cj1192 by TMHMM2.0 at aa 19-41%2C 56-78%2C 91-113%2C 168-187%2C210-232%2C 242-264%2C 351-373 and 388-407;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1192;part=3/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1120469	1120528	.	+	.	ID=id-Cj1192;Note=8 probable transmembrane helices predicted for Cj1192 by TMHMM2.0 at aa 19-41%2C 56-78%2C 91-113%2C 168-187%2C210-232%2C 242-264%2C 351-373 and 388-407;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1192;part=4/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1120595	1120663	.	+	.	ID=id-Cj1192;Note=8 probable transmembrane helices predicted for Cj1192 by TMHMM2.0 at aa 19-41%2C 56-78%2C 91-113%2C 168-187%2C210-232%2C 242-264%2C 351-373 and 388-407;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1192;part=5/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1120691	1120759	.	+	.	ID=id-Cj1192;Note=8 probable transmembrane helices predicted for Cj1192 by TMHMM2.0 at aa 19-41%2C 56-78%2C 91-113%2C 168-187%2C210-232%2C 242-264%2C 351-373 and 388-407;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1192;part=6/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1121018	1121086	.	+	.	ID=id-Cj1192;Note=8 probable transmembrane helices predicted for Cj1192 by TMHMM2.0 at aa 19-41%2C 56-78%2C 91-113%2C 168-187%2C210-232%2C 242-264%2C 351-373 and 388-407;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1192;part=7/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1121129	1121188	.	+	.	ID=id-Cj1192;Note=8 probable transmembrane helices predicted for Cj1192 by TMHMM2.0 at aa 19-41%2C 56-78%2C 91-113%2C 168-187%2C210-232%2C 242-264%2C 351-373 and 388-407;gbkey=misc_feature;gene=dctA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1192;part=8/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1120034	1121266	.	+	.	ID=id-Cj1192-2;Note=HMMPfam hit to PF00375%2C Sodium:dicarboxylate symporter family%2C score 3.4e-93;gbkey=misc_feature;gene=dctA;inference=protein motif:Pfam:PF00375;locus_tag=Cj1192
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1120682	1120714	.	+	.	ID=id-Cj1192-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=dctA;inference=protein motif:Prosite:PS00013;locus_tag=Cj1192
gi|15791399|ref|NC_002163.1|	EMBL	gene	1121341	1122147	.	-	.	ID=gene-Cj1193c;Name=Cj1193c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1193c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1121341	1122147	.	-	0	ID=cds-CAL35308.1;Parent=gene-Cj1193c;Dbxref=EnsemblGenomes-Gn:Cj1193c,EnsemblGenomes-Tr:CAL35308,InterPro:IPR024519,UniProtKB/TrEMBL:Q0P963,NCBI_GP:CAL35308.1;Name=CAL35308.1;Note=Original (2000) note: Cj1193c%2C probable periplasmic protein%2C len: 268 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1193c;product=putative periplasmic protein;protein_id=CAL35308.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1122289	1123815	.	+	.	ID=gene-Cj1194;Name=Cj1194;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1194
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1122289	1123815	.	+	0	ID=cds-CAL35309.1;Parent=gene-Cj1194;Dbxref=EnsemblGenomes-Gn:Cj1194,EnsemblGenomes-Tr:CAL35309,GOA:Q0P962,InterPro:IPR001204,UniProtKB/TrEMBL:Q0P962,NCBI_GP:CAL35309.1;Name=CAL35309.1;Note=Original (2000) note: Cj1194%2C possible phosphate permease%2C len: 508 aa%3B similar to many predicted phosphate permeases e.g. TR:Q50684 Mycobacterium tuberculosis putative phosphate permease Rv2281 MTCY339.29C (552 aa)%2Cfasta scores%3B opt: 900 z-score: 971.5 E(): 0%2C 46.6%25 identity in 511 aa overlap. 32.7%25 identity to HP1491%3B~Updated (2006) note: Pfam domain PF01384 Phosphate transporter family identified within CDS. Also%2C thirteen probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification -Transport/binding proteins - Anions;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1194;product=possible phosphate permease;protein_id=CAL35309.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1122301	1122369	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=1/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1122382	1122441	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=2/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1122502	1122555	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=3/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1122613	1122672	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=4/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1122685	1122753	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=5/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1122811	1122879	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=6/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1123114	1123182	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=7/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1123225	1123290	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=8/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1123324	1123392	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=9/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1123450	1123518	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=10/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1123555	1123623	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=11/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1123633	1123692	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=12/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1123726	1123794	.	+	.	ID=id-Cj1194;Note=13 probable transmembrane helices predicted for Cj1194 by TMHMM2.0 at aa 5-27%2C 32-51%2C 72-89%2C 109-128%2C133-155%2C 175-197%2C 276-298%2C 313-334%2C 346-368%2C 388-410%2C423-445%2C 449-468 and 480-502;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1194;part=13/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1122433	1123773	.	+	.	ID=id-Cj1194-2;Note=HMMPfam hit to PF01384%2C Phosphate transporter family%2C score 9.5e-139;gbkey=misc_feature;inference=protein motif:Pfam:PF01384;locus_tag=Cj1194
gi|15791399|ref|NC_002163.1|	EMBL	gene	1123823	1125001	.	-	.	ID=gene-Cj1195c;Name=pyrC2;gbkey=Gene;gene=pyrC2;gene_biotype=protein_coding;locus_tag=Cj1195c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1123823	1125001	.	-	0	ID=cds-CAL35310.1;Parent=gene-Cj1195c;Dbxref=EnsemblGenomes-Gn:Cj1195c,EnsemblGenomes-Tr:CAL35310,GOA:Q0P961,InterPro:IPR011059,UniProtKB/TrEMBL:Q0P961,NCBI_GP:CAL35310.1;Name=CAL35310.1;Note=Original (2000) note: Cj1195c%2C pyrC2%2C probable dihydroorotase%2C len: 392 aa%3B similar to e.g. PYRC_BACSU dihydroorotase (EC 3.5.2.3) (428 aa)%2C fasta scores%3B opt: 256 z-score: 307.9 E(): 7.5e-10%2C 26.1%25 identity in 402 aa overlap. 30.1%25 identity to HP0266. No apparent similarity to pyrC%2C Cj0259%3B~Updated (2006) note: Pfam domain PF01979 Amidohydrolase family identified within CDS. Further support given to product function. Characterised in Bacillus subtilis with marginal identity score. Putative kept in product function. Functional classification -Pyrimidine ribonucleotide biosynthesis%3B~PMID:15278241;gbkey=CDS;gene=pyrC2;inference=protein motif:Pfam:PF01979;locus_tag=Cj1195c;product=putative dihydroorotase;protein_id=CAL35310.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1123931	1124878	.	-	.	ID=id-Cj1195c;Note=HMMPfam hit to PF01979%2C Amidohydrolase family%2Cscore 0.096;gbkey=misc_feature;gene=pyrC2;inference=protein motif:Pfam:PF01979;locus_tag=Cj1195c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1124468	1124506	.	-	.	ID=id-Cj1195c-2;Note=PS00018 EF-hand calcium-binding domain;gbkey=misc_feature;gene=pyrC2;inference=protein motif:Prosite:PS00018;locus_tag=Cj1195c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1125011	1125907	.	-	.	ID=gene-Cj1196c;Name=gpsA;gbkey=Gene;gene=gpsA;gene_biotype=protein_coding;locus_tag=Cj1196c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1125011	1125907	.	-	0	ID=cds-CAL35311.1;Parent=gene-Cj1196c;Dbxref=EnsemblGenomes-Gn:Cj1196c,EnsemblGenomes-Tr:CAL35311,GOA:Q9PN99,InterPro:IPR006109,InterPro:IPR006168,InterPro:IPR008927,InterPro:IPR011128,InterPro:IPR013328,InterPro:IPR016040,NCBI_GP:CAL35311.1;Name=CAL35311.1;Note=Original (2000) note: Cj1196c%2C gpsA%2C probable glycerol-3-phosphate dehydrogenase [NAD(P)+]%2C len: 298 aa%3B similar to e.g. GPDA_BACSU glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) (345 aa)%2C fasta scores%3B opt: 529 z-score: 617.1 E(): 4.5e-27%2C 34.8%25 identity in 325 aa overlap. 50.5%25 identity to HP0961. Contains Pfam match to entry PF01210 NAD_Gly3P_dh%2CNAD-dependent glycerol-3-phosphate dehydrogenase%3B~Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Energy metabolism -Respiration - Aerobic%3B~PMID:7592341%2C PMID:6985897;gbkey=CDS;gene=gpsA;inference=protein motif:Pfam:PF01210;locus_tag=Cj1196c;product=glycerol-3-phosphate dehydrogenase [NAD(P)+];protein_id=CAL35311.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1125029	1125460	.	-	.	ID=id-Cj1196c;Note=HMMPfam hit to PF07479%2C NAD-dependent glycerol-3-phosphate deh%2C score 6.7e-64;gbkey=misc_feature;gene=gpsA;inference=protein motif:Pfam:PF07479;locus_tag=Cj1196c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1125461	1125907	.	-	.	ID=id-Cj1196c-2;Note=HMMPfam hit to PF01210%2C NAD-dependent glycerol-3-phosphate deh%2C score 2.4e-14;gbkey=misc_feature;gene=gpsA;inference=protein motif:Pfam:PF01210;locus_tag=Cj1196c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1125904	1127322	.	-	.	ID=gene-Cj1197c;Name=gatB;gbkey=Gene;gene=gatB;gene_biotype=protein_coding;locus_tag=Cj1197c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1125904	1127322	.	-	0	ID=cds-CAL35312.1;Parent=gene-Cj1197c;Dbxref=EnsemblGenomes-Gn:Cj1197c,EnsemblGenomes-Tr:CAL35312,GOA:Q9PN98,InterPro:IPR003789,InterPro:IPR004413,InterPro:IPR006075,InterPro:IPR017958,InterPro:IPR017959,InterPro:IPR018027,NCBI_GP:CAL35312.1;Name=CAL35312.1;Note=Original (2000) note: Cj1197c%2C gatB%2C probable Glu-tRNAGln amidotransferase subunit B%2C len: 472 aa%3B similar to e.g. TR:O30509 (EMBL:AF008553) Bacillus subtilis Glu-tRNAGln amidotransferase subunit B (476 aa)%2Cfasta scores%3B opt: 1351 z-score: 1509.2 E(): 0%2C 47.3%25 identity in 471 aa overlap. 64.7%25 identity to HP0658. Contains PS01234 PET112 family signature%2C and Pfam match to entry PF01162 PET112%2C PET112 family%3B~Updated (2006) note: Pfam domain PF02637 GatB/Yqey domain identified within CDS. Further support given to product function. Characterised in Bacillus subtilis with acceptable identity score%2C so putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:9342321%2C PMID:11445070;gbkey=CDS;gene=gatB;inference=protein motif:Prosite:PS01234;locus_tag=Cj1197c;product=Glu-tRNAGln amidotransferase subunit B;protein_id=CAL35312.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1125910	1126353	.	-	.	ID=id-Cj1197c;Note=HMMPfam hit to PF02637%2C GatB/Yqey domain%2C score 2.1e-54;gbkey=misc_feature;gene=gatB;inference=protein motif:Pfam:PF02637;locus_tag=Cj1197c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1126357	1126554	.	-	.	ID=id-Cj1197c-2;Note=HMMPfam hit to PF01162%2C PET112 family%2C C terminal region%2C score 5e-24;gbkey=misc_feature;gene=gatB;inference=protein motif:Pfam:PF01162;locus_tag=Cj1197c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1126612	1127322	.	-	.	ID=id-Cj1197c-3;Note=HMMPfam hit to PF02934%2C PET112 family%2C N terminal region%2C score 7.9e-155;gbkey=misc_feature;gene=gatB;inference=protein motif:Pfam:PF02934;locus_tag=Cj1197c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1126861	1126908	.	-	.	ID=id-Cj1197c-4;Note=PS01234 PET112 family signature;gbkey=misc_feature;gene=gatB;inference=protein motif:Prosite:PS01234;locus_tag=Cj1197c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1127437	1127931	.	+	.	ID=gene-Cj1198;Name=luxS;gbkey=Gene;gene=luxS;gene_biotype=protein_coding;locus_tag=Cj1198
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1127437	1127931	.	+	0	ID=cds-CAL35313.1;Parent=gene-Cj1198;Dbxref=EnsemblGenomes-Gn:Cj1198,EnsemblGenomes-Tr:CAL35313,GOA:Q9PN97,InterPro:IPR003815,InterPro:IPR011249,NCBI_GP:CAL35313.1;Name=CAL35313.1;Note=Original (2000) note: Cj1198%2C unknown%2C len: 164 aa%3B highly similar to hypothetical proteins e.g. YGAG_ECOLI (170 aa)%2C fasta scores%3B opt: 808 z-score: 1003.1 E(): 0%2C71.3%25 identity in 160 aa overlap. 40.0%25 identity to HP0105%3B~Updated (2006) note: Pfam domain PF02664 S-Ribosylhomocysteinase (LuxS) identified within CDS. In bacteria%2C the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce%2C release%2C and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. The LuxS protein is involved in quorum sensing and is a autoinducer-production protein. Product function modified to new family member based on this information. Characterised in Campylobacter spp. and other related bacteria%2C so putative not added to product function. Functional classification - Pathogenicity%3B~PMID:11988522%2C PMID:9990077%2C PMID:12200329;gbkey=CDS;gene=luxS;inference=protein motif:Pfam:PF02664;locus_tag=Cj1198;product=S-ribosylhomocysteine lyase (autoinducer-2 production protein LuxS);protein_id=CAL35313.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1127440	1127922	.	+	.	ID=id-Cj1198;Note=HMMPfam hit to PF02664%2C S-Ribosylhomocysteinase (LuxS)%2C score 2.5e-98;gbkey=misc_feature;gene=luxS;inference=protein motif:Pfam:PF02664;locus_tag=Cj1198
gi|15791399|ref|NC_002163.1|	EMBL	gene	1128243	1129235	.	+	.	ID=gene-Cj1199;Name=Cj1199;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1199
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1128243	1129235	.	+	0	ID=cds-CAL35314.1;Parent=gene-Cj1199;Dbxref=EnsemblGenomes-Gn:Cj1199,EnsemblGenomes-Tr:CAL35314,GOA:Q0P957,InterPro:IPR002283,InterPro:IPR005123,InterPro:IPR026992,InterPro:IPR027443,UniProtKB/TrEMBL:Q0P957,NCBI_GP:CAL35314.1;Name=CAL35314.1;Note=Original (2000) note: Cj1199%2C probable iron/ascorbate-dependent oxidoreductase%2C len: 330 aa%3B similar to many eukaryotic oxidoreductases e.g. LDOX_MALSP Malus sp. (crab apple) leucoanthocyanidin dioxygenase (EC 1.-.-.-) (357 aa)%2C fasta scores%3B opt: 334 z-score: 386.2 E(): 3.3e-14%2C 25.2%25 identity in 313 aa overlap%2C and ACCO_MALDO Malus domesticus (apple) 1-aminocyclopropane-1-carboxylate oxidase (314 aa)%2C fasta scores%3B opt: 301 z-score: 349.6 E(): 3.6e-12%2C 26.7%25 identity in 303 aa overlap. No Hp match. Contains Pfam match to entry PF00671 Fe_Asc_oxidored%2C Iron/Ascorbate family of oxidoreductases%3B~Updated (2006) note: Pfam domain PF03171 2OG-Fe(II) oxygenase superfamily identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Putative kept in product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF03171;locus_tag=Cj1199;product=putative iron/ascorbate-dependent oxidoreductase;protein_id=CAL35314.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1128747	1129040	.	+	.	ID=id-Cj1199;Note=HMMPfam hit to PF03171%2C 2OG-Fe(II) oxygenase superfamily%2C score 1.9e-25;gbkey=misc_feature;inference=protein motif:Pfam:PF03171;locus_tag=Cj1199
gi|15791399|ref|NC_002163.1|	EMBL	gene	1129228	1130016	.	+	.	ID=gene-Cj1200;Name=Cj1200;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1200
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1129228	1130016	.	+	0	ID=cds-CAL35315.1;Parent=gene-Cj1200;Dbxref=EnsemblGenomes-Gn:Cj1200,EnsemblGenomes-Tr:CAL35315,InterPro:IPR004872,UniProtKB/TrEMBL:Q0P956,NCBI_GP:CAL35315.1;Name=CAL35315.1;Note=Original (2000) note: Cj1200%2C probable periplasmic protein%2C len: 262 aa%3B similar to members of the nlpA family of outem membrane lipoproteins%2C e.g. NLPA_ECOLI lipoprotein-28 precursor (272 aa)%2C fasta scores%3B opt: 560 z-score: 650.6 E(): 6.1e-29%2C 39.7%25 identity in 239 aa overlap%2C and PLPC_PASHA outer membrane lipoprotein 3 precursor (263 aa)%2C fasta scores%3B opt: 564 z-score: 655.4 E(): 3.3e-29%2C 38.6%25 identity in 259 aa overlap. No Hp ortholog. Contains probable N-terminal signal sequence. Also similar to Cj0772c (57.5%25 identity in 254 aa overlap)%2C Cj0771c (45.6%25 identity in 259 aa overlap)%2C and Cj0770c (44.9%25 identity in 256 aa overlap)%3B~Updated (2006) note: Pfam domain PF03180 NLPA lipoprotein identified within CDS. Characterised in Escherichia coli as lipoprotein-28 precursor. Recent work has led to classification of some similar CDS's as D-methionine-binding lipoprotein metQ precursor. Product function modified to more specific family member. Putative kept within product function. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:3003106%2C PMID:12169620;gbkey=CDS;inference=protein motif:Pfam:PF03180;locus_tag=Cj1200;product=putative NLPA family lipoprotein;protein_id=CAL35315.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1129315	1130013	.	+	.	ID=id-Cj1200;Note=HMMPfam hit to PF03180%2C NLPA lipoprotein%2C score 3.8e-131;gbkey=misc_feature;inference=protein motif:Pfam:PF03180;locus_tag=Cj1200
gi|15791399|ref|NC_002163.1|	EMBL	gene	1130028	1132292	.	+	.	ID=gene-Cj1201;Name=metE;gbkey=Gene;gene=metE;gene_biotype=protein_coding;locus_tag=Cj1201
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1130028	1132292	.	+	0	ID=cds-CAL35316.1;Parent=gene-Cj1201;Dbxref=EnsemblGenomes-Gn:Cj1201,EnsemblGenomes-Tr:CAL35316,GOA:Q9PN94,InterPro:IPR002629,InterPro:IPR006276,InterPro:IPR013215,NCBI_GP:CAL35316.1;Name=CAL35316.1;Note=Original (2000) note: Cj1201%2C metE%2C probable 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase%2C len: 754 aa%3B similar to many e.g. METE_BACSU 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) (761 aa)%2C fasta scores%3B opt: 2118 z-score: 2325.6 E(): 0%2C 46.1%25 identity in 762 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF01717 Cobalamin-independent synthase%2C Catalytic domain and PF08267 Cobalamin-independent synthase%2C N-terminal domain were identified within CDS. Characterised in Escherichia coli and Bacillus subtilis with acceptable identity scores. Putative not added to product function. Functional classification - Amino acid biosynthesis - Aspartate family%3B~PMID:2643109%2C PMID:10625458%2C PMID:2988449;gbkey=CDS;gene=metE;inference=protein motif:Pfam:PF08267;locus_tag=Cj1201;product=5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase;protein_id=CAL35316.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1131300	1132274	.	+	.	ID=id-Cj1201;Note=HMMPfam hit to PF01717%2C Methionine synthase%2Cvitamin-B12 inde%2C score 6.4e-187;gbkey=misc_feature;gene=metE;inference=protein motif:Pfam:PF01717;locus_tag=Cj1201
gi|15791399|ref|NC_002163.1|	EMBL	gene	1132302	1133150	.	+	.	ID=gene-Cj1202;Name=metF;gbkey=Gene;gene=metF;gene_biotype=protein_coding;locus_tag=Cj1202
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1132302	1133150	.	+	0	ID=cds-CAL35317.1;Parent=gene-Cj1202;Dbxref=EnsemblGenomes-Gn:Cj1202,EnsemblGenomes-Tr:CAL35317,GOA:Q0P954,InterPro:IPR003171,InterPro:IPR004620,InterPro:IPR029041,UniProtKB/TrEMBL:Q0P954,NCBI_GP:CAL35317.1;Name=CAL35317.1;Note=Original (2000) note: Cj1202%2C metF%2C probable 5%2C10-methylenetetrahydrofolate reductase%2C len: 282 aa%3B similar to e.g. METF_ECOLI 5%2C10-methylenetetrahydrofolate reductase (EC 1.7.99.5) (296 aa)%2C fasta scores%3B opt: 529 z-score: 613.4 E(): 7.2e-27 33.0%25 identity in 264 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02219 Methylenetetrahydrofolate reductase was identified within CDS. Characterised in Escherichia coli with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification -Central intermediary metabolism - General%3B~PMID:6356036%2C PMID:10201405;gbkey=CDS;gene=metF;inference=protein motif:Pfam:PF02219;locus_tag=Cj1202;product=5%2C10-methylenetetrahydrofolate reductase;protein_id=CAL35317.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1132308	1133120	.	+	.	ID=id-Cj1202;Note=HMMPfam hit to PF02219%2C Methylenetetrahydrofolate reductase%2C score 3.9e-72;gbkey=misc_feature;gene=metF;inference=protein motif:Pfam:PF02219;locus_tag=Cj1202
gi|15791399|ref|NC_002163.1|	EMBL	gene	1133172	1133363	.	-	.	ID=gene-Cj1203c;Name=Cj1203c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1203c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1133172	1133363	.	-	0	ID=cds-CAL35318.1;Parent=gene-Cj1203c;Dbxref=EnsemblGenomes-Gn:Cj1203c,EnsemblGenomes-Tr:CAL35318,UniProtKB/TrEMBL:Q0P953,NCBI_GP:CAL35318.1;Name=CAL35318.1;Note=Original (2000) note: Cj1203c%2C probable integral membrane protein%2C len: 63 aa%3B no Hp match%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Functional classification -Central intermediary metabolism - General;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1203c;product=putative integral membrane protein;protein_id=CAL35318.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1133211	1133279	.	-	.	ID=id-Cj1203c;Note=2 probable transmembrane helices predicted for Cj1203c by TMHMM2.0 at aa 2-24 and 29-51;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1203c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1133292	1133360	.	-	.	ID=id-Cj1203c;Note=2 probable transmembrane helices predicted for Cj1203c by TMHMM2.0 at aa 2-24 and 29-51;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1203c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	1133360	1134040	.	-	.	ID=gene-Cj1204c;Name=atpB;gbkey=Gene;gene=atpB;gene_biotype=protein_coding;locus_tag=Cj1204c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1133360	1134040	.	-	0	ID=cds-CAL35319.1;Parent=gene-Cj1204c;Dbxref=EnsemblGenomes-Gn:Cj1204c,EnsemblGenomes-Tr:CAL35319,GOA:Q0P952,InterPro:IPR000568,InterPro:IPR023011,NCBI_GP:CAL35319.1;Name=CAL35319.1;Note=Original (2000) note: Cj1204c%2C atpB%2C probable ATP synthase F0 sector A subunit%2C len: 226 aa%3B similar to e.g. ATP6_SYNY3 ATP synthase A chain (EC 3.6.1.34) (276 aa)%2Cfasta scores%3B opt: 438 z-score: 518.6 E(): 1.4e-21%2C 38.2%25 identity in 212 aa overlap. 57.4%25 identity to HP0828. Contains PS00449 ATP synthase a subunit signature%2C and Pfam match to entry PF00119 ATP-synt_A%2C ATP synthase A chain%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised in Synechocystis spp. with acceptable identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Energy metabolism - ATP-proton motive force%3B~PMID:1832989;gbkey=CDS;gene=atpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1204c;product=ATP synthase F0 sector A subunit;protein_id=CAL35319.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1133375	1133428	.	-	.	ID=id-Cj1204c;Note=6 probable transmembrane helices predicted for Cj1204c by TMHMM2.0 at aa 15-37%2C 76-98%2C 103-122%2C 134-156%2C176-198 and 205-222;gbkey=misc_feature;gene=atpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1204c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1133447	1133515	.	-	.	ID=id-Cj1204c;Note=6 probable transmembrane helices predicted for Cj1204c by TMHMM2.0 at aa 15-37%2C 76-98%2C 103-122%2C 134-156%2C176-198 and 205-222;gbkey=misc_feature;gene=atpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1204c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1133573	1133641	.	-	.	ID=id-Cj1204c;Note=6 probable transmembrane helices predicted for Cj1204c by TMHMM2.0 at aa 15-37%2C 76-98%2C 103-122%2C 134-156%2C176-198 and 205-222;gbkey=misc_feature;gene=atpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1204c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1133675	1133734	.	-	.	ID=id-Cj1204c;Note=6 probable transmembrane helices predicted for Cj1204c by TMHMM2.0 at aa 15-37%2C 76-98%2C 103-122%2C 134-156%2C176-198 and 205-222;gbkey=misc_feature;gene=atpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1204c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1133747	1133815	.	-	.	ID=id-Cj1204c;Note=6 probable transmembrane helices predicted for Cj1204c by TMHMM2.0 at aa 15-37%2C 76-98%2C 103-122%2C 134-156%2C176-198 and 205-222;gbkey=misc_feature;gene=atpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1204c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1133930	1133998	.	-	.	ID=id-Cj1204c;Note=6 probable transmembrane helices predicted for Cj1204c by TMHMM2.0 at aa 15-37%2C 76-98%2C 103-122%2C 134-156%2C176-198 and 205-222;gbkey=misc_feature;gene=atpB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1204c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1133387	1133824	.	-	.	ID=id-Cj1204c-2;Note=HMMPfam hit to PF00119%2C ATP synthase A chain%2C score 1.5e-29;gbkey=misc_feature;gene=atpB;inference=protein motif:Pfam:PF00119;locus_tag=Cj1204c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1133528	1133557	.	-	.	ID=id-Cj1204c-3;Note=PS00449 ATP synthase a subunit signature;gbkey=misc_feature;gene=atpB;inference=protein motif:Prosite:PS00449;locus_tag=Cj1204c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1134109	1135449	.	-	.	ID=gene-Cj1205c;Name=radA;gbkey=Gene;gene=radA;gene_biotype=protein_coding;locus_tag=Cj1205c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1134109	1135449	.	-	0	ID=cds-CAL35320.1;Parent=gene-Cj1205c;Dbxref=EnsemblGenomes-Gn:Cj1205c,EnsemblGenomes-Tr:CAL35320,GOA:Q9PN90,InterPro:IPR003593,InterPro:IPR004504,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR020588,InterPro:IPR027417,NCBI_GP:CAL35320.1;Name=CAL35320.1;Note=Original (2000) note: Cj1205c%2C radA%2C probable DNA repair protein RadA (ATP-dependant protease)%2C len: 446 aa%3B RADA_BACSU DNA repair protein RadA homolog (458 aa)%2C fasta scores%3B opt: 1298 z-score: 1411.9 E(): 0%2C 46.8%25 identity in 432 aa overlap. 55.6%25 identity to HP0223. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF03796 DnaB-like helicase C terminal domain identified within CDS. Further support given to product function. Some characterisation work carried out in Bacillus subtilis and Escherichia coli with acceptable identity score. Original designations were homolog. Putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:12446634;gbkey=CDS;gene=radA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1205c;product=putative DNA repair protein RadA (ATP-dependant protease);protein_id=CAL35320.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1134793	1135251	.	-	.	ID=id-Cj1205c;Note=HMMPfam hit to PF03796%2C DnaB-like helicase C terminal domain%2C score 0.00015;gbkey=misc_feature;gene=radA;inference=protein motif:Pfam:PF03796;locus_tag=Cj1205c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1135141	1135164	.	-	.	ID=id-Cj1205c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=radA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1205c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1135449	1136315	.	-	.	ID=gene-Cj1206c;Name=ftsY;gbkey=Gene;gene=ftsY;gene_biotype=protein_coding;locus_tag=Cj1206c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1135449	1136315	.	-	0	ID=cds-CAL35321.1;Parent=gene-Cj1206c;Dbxref=EnsemblGenomes-Gn:Cj1206c,EnsemblGenomes-Tr:CAL35321,GOA:Q0P950,InterPro:IPR000897,InterPro:IPR003593,InterPro:IPR004390,InterPro:IPR013822,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P950,NCBI_GP:CAL35321.1;Name=CAL35321.1;Note=Original (2000) note: Cj1206c%2C ftsY%2C probable signal recognition particle protein%2C len: 288 aa%3B similar to e.g. FTSY_ECOLI cell division protein FTSY (497 aa)%2Cfasta scores%3B opt: 663 z-score: 759.0 E(): 0%2C 43.3%25 identity in 298 aa overlap%2C and PILA_NEIME probable signal recognition particle protein (421 aa)%2C fasta scores%3B opt: 633 z-score: 726.0 E(): 3.8e-33%2C 39.9%25 identity in 298 aa overlap. 48.6%25 identity to HP0763. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00300 SRP54-type proteins GTP-binding domain signature%2C and Pfam match to entry PF00448 SRP54%2C SRP54-type protein. Also similar to Cj0709 ffh (31.4%25 identity in 271 aa overlap)%3B~Updated (2006) note: Similar to more than one bacteria with acceptable identity score. Putative kept within product function. Functional classification -Protein and peptide secretion%3B~PMID:10048040%2C PMID:9188744%2C PMID:8194520;gbkey=CDS;gene=ftsY;inference=protein motif:Prosite:PS00300;locus_tag=Cj1206c;product=putative signal recognition particle protein;protein_id=CAL35321.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1135464	1136072	.	-	.	ID=id-Cj1206c;Note=HMMPfam hit to PF00448%2C SRP54-type protein%2C GTPase domain%2C score 1.4e-102;gbkey=misc_feature;gene=ftsY;inference=protein motif:Pfam:PF00448;locus_tag=Cj1206c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1135506	1135547	.	-	.	ID=id-Cj1206c-2;Note=PS00300 SRP54-type proteins GTP-binding domain signature;gbkey=misc_feature;gene=ftsY;inference=protein motif:Prosite:PS00300;locus_tag=Cj1206c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1136025	1136048	.	-	.	ID=id-Cj1206c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ftsY;inference=protein motif:Prosite:PS00017;locus_tag=Cj1206c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1136315	1136872	.	-	.	ID=gene-Cj1207c;Name=Cj1207c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1207c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1136315	1136872	.	-	0	ID=cds-CAL35322.1;Parent=gene-Cj1207c;Dbxref=EnsemblGenomes-Gn:Cj1207c,EnsemblGenomes-Tr:CAL35322,InterPro:IPR012336,UniProtKB/TrEMBL:Q0P949,NCBI_GP:CAL35322.1;Name=CAL35322.1;Note=Original (2000) note: Cj1207c%2C possible lipoprotein thiredoxin%2C len: 185 aa%3B some similarity to TR:G4100188 (EMBL:U95250) Treponema pallidum predicted thioredoxin (185 aa)%2C fasta scores%3B opt: 196 z-score: 242.3 E(): 3.4e-06%2C 31.5%25 identity in 111 aa overlap%2C and HELX_RHOCA thiol:disulfide interchange protein(176 aa)%2C fatsa scores%3B opt: 153 z-score: 192.6 E(): 0.002%2C 23.2%25 identity in 142 aa overlap. 23.7%25 identity to HP0762. Also similar to Cj1106 (29.4%25 identity in 201 aa overlap). Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Prosite domain PS50223 THIOREDOXIN_2%2C Thioredoxin domain 2 was identified within CDS. Further support given to product function. Putative kept within product function. Functional classification -Energy metabolism - Electron transport;gbkey=CDS;inference=protein motif:Prosite:PS50223;locus_tag=Cj1207c;product=putative lipoprotein thiredoxin;protein_id=CAL35322.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1136816	1136848	.	-	.	ID=id-Cj1207c;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1207c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1136955	1137581	.	+	.	ID=gene-Cj1208;Name=Cj1208;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1208
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1136955	1137581	.	+	0	ID=cds-CAL35323.1;Parent=gene-Cj1208;Dbxref=EnsemblGenomes-Gn:Cj1208,EnsemblGenomes-Tr:CAL35323,GOA:Q0P948,InterPro:IPR002698,InterPro:IPR024185,UniProtKB/TrEMBL:Q0P948,NCBI_GP:CAL35323.1;Name=CAL35323.1;Note=Original (2000) note: Cj1208%2C unknown%2C len: 208 aa%3B similar to hypothetical proteins e.g. YGFA_HAEIN HI0858 (187 aa)%2C fasta scores%3B opt: 150 z-score: 196.6 E(): 0.0012%2C 26.8%25 identity in 164 aa overlap. 27.8%25 identity to HP0761%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Pfam domain PF01812 5-formyltetrahydrofolate cyclo-ligase family identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation has been carried out in related bacteria%2C so putative kept within product function. Functional classification -Purine ribonucleotide biosynthesis;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1208;product=putative 5-formyltetrahydrofolate cyclo-ligase family protein;protein_id=CAL35323.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1137514	1137567	.	+	.	ID=id-Cj1208;Note=1 probable transmembrane helix predicted for Cj1209 by TMHMM2.0 at aa 5-22;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1208
gi|15791399|ref|NC_002163.1|	EMBL	gene	1137502	1139055	.	+	.	ID=gene-Cj1209;Name=Cj1209;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1209
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1137502	1139055	.	+	0	ID=cds-CAL35324.1;Parent=gene-Cj1209;Dbxref=EnsemblGenomes-Gn:Cj1209,EnsemblGenomes-Tr:CAL35324,GOA:Q9PN86,InterPro:IPR003607,InterPro:IPR004087,InterPro:IPR004088,InterPro:IPR006674,InterPro:IPR006675,InterPro:IPR017705,InterPro:IPR022711,NCBI_GP:CAL35324.1;Name=CAL35324.1;Note=Original (2000) note: Cj1209%2C unknown%2C len: 517 aa%3B similar to hypothetical proteins e.g. TR:O31774 (EMBL:Z99112) Bacillus subtilis YMDA protein (520 aa)%2Cfasta scores%3B opt: 1496 z-score: 1470.2 E(): 0%2C 46.1%25 identity in 521 aa overlap. 45.4%25 identity to HP0760%3B~Updated (2006) note: Pfam domains PF00013 KH domain and PF01966 HD domain were identified within CDS. HD domains are metal dependent phosphohydrolases. This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity. KH domains represent nucleic acid binding properties. Product modified to more specific family member based on these findings. No specific characterisation with acceptable identity score has been carried out yet%2C so putative kept within product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01966;locus_tag=Cj1209;product=HD/KH domain containing protein;protein_id=CAL35324.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1138123	1138302	.	+	.	ID=id-Cj1209;Note=HMMPfam hit to PF00013%2C KH domain%2C score 3.5e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF00013;locus_tag=Cj1209
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1138498	1138779	.	+	.	ID=id-Cj1209-2;Note=HMMPfam hit to PF01966%2C HD domain%2C score 7.9e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF01966;locus_tag=Cj1209
gi|15791399|ref|NC_002163.1|	EMBL	gene	1139064	1139621	.	+	.	ID=gene-Cj1210;Name=Cj1210;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1210
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1139064	1139621	.	+	0	ID=cds-CAL35325.1;Parent=gene-Cj1210;Dbxref=EnsemblGenomes-Gn:Cj1210,EnsemblGenomes-Tr:CAL35325,InterPro:IPR015414,UniProtKB/TrEMBL:Q0P946,NCBI_GP:CAL35325.1;Name=CAL35325.1;Note=Original (2000) note: Cj1210%2C probable integral membrane protein%2C len: 185 aa%3B similar to members of the dedA family e.g. DEDA_ECOLI DEDA protein (219 aa)%2C fasta scores%3B opt: 193 z-score: 248.3 E(): 1.6e-06%2C 26.7%25 identity in 172 aa overlap. 35.6%25 identity to HP1162. Also similar to Cj0928 (27.7%25 identity in 177 aa overlap)%2C and Cj1168c (23.0%25 identity in 200 aa overlap). Contains Pfam match to entry PF00597 DedA%2C DedA family%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1210;product=putative integral membrane protein;protein_id=CAL35325.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1139100	1139168	.	+	.	ID=id-Cj1210;Note=4 probable transmembrane helices predicted for Cj1210 by TMHMM2.0 at aa 13-35%2C 45-67%2C 124-146 and 161-180;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1210;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1139196	1139264	.	+	.	ID=id-Cj1210;Note=4 probable transmembrane helices predicted for Cj1210 by TMHMM2.0 at aa 13-35%2C 45-67%2C 124-146 and 161-180;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1210;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1139433	1139501	.	+	.	ID=id-Cj1210;Note=4 probable transmembrane helices predicted for Cj1210 by TMHMM2.0 at aa 13-35%2C 45-67%2C 124-146 and 161-180;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1210;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1139544	1139603	.	+	.	ID=id-Cj1210;Note=4 probable transmembrane helices predicted for Cj1210 by TMHMM2.0 at aa 13-35%2C 45-67%2C 124-146 and 161-180;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1210;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1139103	1139552	.	+	.	ID=id-Cj1210-2;Note=HMMPfam hit to PF00597%2C DedA family%2C score 2.4e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF00597;locus_tag=Cj1210
gi|15791399|ref|NC_002163.1|	EMBL	gene	1139621	1140880	.	+	.	ID=gene-Cj1211;Name=Cj1211;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1211
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1139621	1140880	.	+	0	ID=cds-CAL35326.1;Parent=gene-Cj1211;Dbxref=EnsemblGenomes-Gn:Cj1211,EnsemblGenomes-Tr:CAL35326,InterPro:IPR004477,UniProtKB/TrEMBL:Q0P945,NCBI_GP:CAL35326.1;Name=CAL35326.1;Note=Original (2000) note: Cj1211%2C probable integral membrane protein%2C len: 419 aa%3B similar to hypothetical membrane proteins e.g. TR:O51537 (EMBL:AE001160) BB0591 (416 aa)%2C fasta scores%3B opt: 222 z-score: 251.2 E(): 1.1e-06%2C 26.4%25 identity in 405 aa overlap. 33.9%25 identity to HP1361 (called competence locus E (comE3))%3B~Updated (2006) note: Pfam motif PF03772 Competence protein was identified within CDS. Nine probable transmembrane helices predicted by TMHMM2.0. Product function modified to more specific family member based on motif match. No specific characterisation with acceptable identity score carried out yet%2C so putative kept in product function. Functional classification - Membranes%2Clipoproteins and porins%3B~PMID:7968523;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1211;product=putative competence family protein;protein_id=CAL35326.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1139663	1139731	.	+	.	ID=id-Cj1211;Note=9 probable transmembrane helices predicted for Cj1211 by TMHMM2.0 at aa 15-37%2C 176-198%2C 213-235%2C 242-264%2C274-294%2C 307-329%2C 334-356%2C 369-391 and 401-418;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1211;part=1/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140146	1140214	.	+	.	ID=id-Cj1211;Note=9 probable transmembrane helices predicted for Cj1211 by TMHMM2.0 at aa 15-37%2C 176-198%2C 213-235%2C 242-264%2C274-294%2C 307-329%2C 334-356%2C 369-391 and 401-418;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1211;part=2/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140257	1140325	.	+	.	ID=id-Cj1211;Note=9 probable transmembrane helices predicted for Cj1211 by TMHMM2.0 at aa 15-37%2C 176-198%2C 213-235%2C 242-264%2C274-294%2C 307-329%2C 334-356%2C 369-391 and 401-418;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1211;part=3/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140344	1140412	.	+	.	ID=id-Cj1211;Note=9 probable transmembrane helices predicted for Cj1211 by TMHMM2.0 at aa 15-37%2C 176-198%2C 213-235%2C 242-264%2C274-294%2C 307-329%2C 334-356%2C 369-391 and 401-418;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1211;part=4/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140440	1140502	.	+	.	ID=id-Cj1211;Note=9 probable transmembrane helices predicted for Cj1211 by TMHMM2.0 at aa 15-37%2C 176-198%2C 213-235%2C 242-264%2C274-294%2C 307-329%2C 334-356%2C 369-391 and 401-418;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1211;part=5/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140539	1140607	.	+	.	ID=id-Cj1211;Note=9 probable transmembrane helices predicted for Cj1211 by TMHMM2.0 at aa 15-37%2C 176-198%2C 213-235%2C 242-264%2C274-294%2C 307-329%2C 334-356%2C 369-391 and 401-418;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1211;part=6/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140620	1140688	.	+	.	ID=id-Cj1211;Note=9 probable transmembrane helices predicted for Cj1211 by TMHMM2.0 at aa 15-37%2C 176-198%2C 213-235%2C 242-264%2C274-294%2C 307-329%2C 334-356%2C 369-391 and 401-418;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1211;part=7/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140725	1140793	.	+	.	ID=id-Cj1211;Note=9 probable transmembrane helices predicted for Cj1211 by TMHMM2.0 at aa 15-37%2C 176-198%2C 213-235%2C 242-264%2C274-294%2C 307-329%2C 334-356%2C 369-391 and 401-418;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1211;part=8/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140821	1140874	.	+	.	ID=id-Cj1211;Note=9 probable transmembrane helices predicted for Cj1211 by TMHMM2.0 at aa 15-37%2C 176-198%2C 213-235%2C 242-264%2C274-294%2C 307-329%2C 334-356%2C 369-391 and 401-418;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1211;part=9/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140071	1140850	.	+	.	ID=id-Cj1211-2;Note=HMMPfam hit to PF03772%2C Competence protein%2C score 5.4e-67;gbkey=misc_feature;inference=protein motif:Pfam:PF03772;locus_tag=Cj1211
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140266	1140298	.	+	.	ID=id-Cj1211-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1211
gi|15791399|ref|NC_002163.1|	EMBL	gene	1140824	1141630	.	-	.	ID=gene-Cj1212c;Name=rbn;gbkey=Gene;gene=rbn;gene_biotype=protein_coding;locus_tag=Cj1212c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1140824	1141630	.	-	0	ID=cds-CAL35327.1;Parent=gene-Cj1212c;Dbxref=EnsemblGenomes-Gn:Cj1212c,EnsemblGenomes-Tr:CAL35327,GOA:Q0P944,InterPro:IPR017039,UniProtKB/TrEMBL:Q0P944,NCBI_GP:CAL35327.1;Name=CAL35327.1;Note=Original (2000) note: Cj1212c%2C rbn%2C possible ribonuclease BN%2C len: RBN_ECOLI ribonuclease BN (EC 3.1.-.-) (290 aa)%2C fasta scores%3B opt: 365 z-score: 430.3 E(): 1.1e-16%2C 28.5%25 identity in 242 aa overlap. 29.2%25 identity to HP1407%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Characterised in Escherichia coli with marginal identity score. Putative kept within product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:8955422;gbkey=CDS;gene=rbn;inference=protein motif:TMHMM:2.0;locus_tag=Cj1212c;product=putative ribonuclease BN;protein_id=CAL35327.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140905	1140973	.	-	.	ID=id-Cj1212c;Note=6 probable transmembrane helices predicted for Cj1212c by TMHMM2.0 at aa 20-42%2C 86-108%2C 123-145%2C 157-176%2C191-213 and 220-242;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0;locus_tag=Cj1212c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140992	1141060	.	-	.	ID=id-Cj1212c;Note=6 probable transmembrane helices predicted for Cj1212c by TMHMM2.0 at aa 20-42%2C 86-108%2C 123-145%2C 157-176%2C191-213 and 220-242;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0;locus_tag=Cj1212c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1141103	1141162	.	-	.	ID=id-Cj1212c;Note=6 probable transmembrane helices predicted for Cj1212c by TMHMM2.0 at aa 20-42%2C 86-108%2C 123-145%2C 157-176%2C191-213 and 220-242;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0;locus_tag=Cj1212c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1141196	1141264	.	-	.	ID=id-Cj1212c;Note=6 probable transmembrane helices predicted for Cj1212c by TMHMM2.0 at aa 20-42%2C 86-108%2C 123-145%2C 157-176%2C191-213 and 220-242;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0;locus_tag=Cj1212c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1141307	1141375	.	-	.	ID=id-Cj1212c;Note=6 probable transmembrane helices predicted for Cj1212c by TMHMM2.0 at aa 20-42%2C 86-108%2C 123-145%2C 157-176%2C191-213 and 220-242;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0;locus_tag=Cj1212c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1141505	1141573	.	-	.	ID=id-Cj1212c;Note=6 probable transmembrane helices predicted for Cj1212c by TMHMM2.0 at aa 20-42%2C 86-108%2C 123-145%2C 157-176%2C191-213 and 220-242;gbkey=misc_feature;gene=rbn;inference=protein motif:TMHMM:2.0;locus_tag=Cj1212c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1140866	1141597	.	-	.	ID=id-Cj1212c-2;Note=HMMPfam hit to PF03631%2C Ribonuclease BN-like family%2C score 1.1e-66;gbkey=misc_feature;gene=rbn;inference=protein motif:Pfam:PF03631;locus_tag=Cj1212c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1141634	1143016	.	-	.	ID=gene-Cj1213c;Name=glcD;gbkey=Gene;gene=glcD;gene_biotype=protein_coding;locus_tag=Cj1213c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1141634	1143016	.	-	0	ID=cds-CAL35328.1;Parent=gene-Cj1213c;Dbxref=EnsemblGenomes-Gn:Cj1213c,EnsemblGenomes-Tr:CAL35328,GOA:Q0P943,InterPro:IPR004113,InterPro:IPR006094,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,InterPro:IPR016171,UniProtKB/TrEMBL:Q0P943,NCBI_GP:CAL35328.1;Name=CAL35328.1;Note=Original (2000) note: Cj1213c%2C glcD%2C probable glycolate oxidase subunit D%2C len: 460 aa%3B similar to e.g. GLCD_ECOLI glycolate oxidase subunit GLCD (499 aa)%2C fasta scores%3B opt: 952 z-score: 1099.5 E(): 0%2C 37.0%25 identity in 419 aa overlap. 64.8%25 identity to HP0509%3B~Updated (2006) note: Pfam domains PF02913 FAD linked oxidases%2C C-terminal domain and PF01565 FAD binding domain were identified within CDS. Further support given to product function. Characterised in Escherichia coli with marginal identity score. Putative kept in product function. Functional classification - Degradation - Carbon compounds%3B~PMID:8606183%2C PMID:11283302;gbkey=CDS;gene=glcD;inference=protein motif:Pfam:PF02913;locus_tag=Cj1213c;product=putative glycolate oxidase subunit D;protein_id=CAL35328.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1141643	1142374	.	-	.	ID=id-Cj1213c;Note=HMMPfam hit to PF02913%2C FAD linked oxidases%2CC-terminal domain%2C score 1.4e-99;gbkey=misc_feature;gene=glcD;inference=protein motif:Pfam:PF02913;locus_tag=Cj1213c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1142414	1142902	.	-	.	ID=id-Cj1213c-2;Note=HMMPfam hit to PF01565%2C FAD binding domain%2C score 3.5e-71;gbkey=misc_feature;gene=glcD;inference=protein motif:Pfam:PF01565;locus_tag=Cj1213c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1143019	1143744	.	-	.	ID=gene-Cj1214c;Name=Cj1214c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1214c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1143019	1143744	.	-	0	ID=cds-CAL35329.1;Parent=gene-Cj1214c;Dbxref=EnsemblGenomes-Gn:Cj1214c,EnsemblGenomes-Tr:CAL35329,InterPro:IPR029276,UniProtKB/TrEMBL:Q0P942,NCBI_GP:CAL35329.1;Name=CAL35329.1;Note=Original (2000) note: Cj1214c%2C unknown%2C len: 241 aa%3B similar to N-terminal half of HP0508 (452 aa) (24.9%25 identity in 245 aa overlap)%3B~Updated (2006) note: One signal peptide predicted by SignalP 2.0 HMM. Product function modified to more specific family member. Putative kept within product function. Paper identified linking protein to glycoprotein (PMID:12186869). Functional classification -Transport/binding proteins - Other%3B~PMID:12186869;gbkey=CDS;locus_tag=Cj1214c;product=putative exporting protein;protein_id=CAL35329.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1143866	1145026	.	+	.	ID=gene-Cj1215;Name=Cj1215;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1215
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1143866	1145026	.	+	0	ID=cds-CAL35330.1;Parent=gene-Cj1215;Dbxref=EnsemblGenomes-Gn:Cj1215,EnsemblGenomes-Tr:CAL35330,InterPro:IPR011055,InterPro:IPR016047,UniProtKB/TrEMBL:Q0P941,NCBI_GP:CAL35330.1;Name=CAL35330.1;Note=Original (2000) note: Cj1215%2C probable periplasmic protein%2C len: 386 aa%3B similar to hypothetical proteins e.g. YEBA_ECOLI (419 aa)%2C fasta scores%3B opt: 491 z-score: 556.7 E(): 1e-23%2C 30.2%25 identity in 338 aa overlap. 44.0%25 identity to HP0506. Also similar%2C in part%2C to Cj1087c (40.6%25 identity in 133 aa overlap)%2C and Cj1235 (29.6%25 identity in 206 aa overlap)%3B~Updated (2006) note: Pfam domain PF01551 Peptidase family M23 identified within CDS. Further support given to product function. Product modified to more specific family member based on motif results. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification -Degradation of macromolecules - Proteins%2C peptides and glycopeptides;gbkey=CDS;inference=protein motif:Pfam:PF01551;locus_tag=Cj1215;product=putative peptidase M23 family protein;protein_id=CAL35330.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1144574	1144864	.	+	.	ID=id-Cj1215;Note=HMMPfam hit to PF01551%2C Peptidase family M23%2C score 3.6e-53;gbkey=misc_feature;inference=protein motif:Pfam:PF01551;locus_tag=Cj1215
gi|15791399|ref|NC_002163.1|	EMBL	gene	1145023	1145226	.	-	.	ID=gene-Cj1216c;Name=Cj1216c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1216c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1145023	1145226	.	-	0	ID=cds-CAL35331.1;Parent=gene-Cj1216c;Dbxref=EnsemblGenomes-Gn:Cj1216c,EnsemblGenomes-Tr:CAL35331,UniProtKB/TrEMBL:Q0P940,NCBI_GP:CAL35331.1;Name=CAL35331.1;Note=Original (2000) note: Cj1216c%2C unknown%2C len: 67 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj1216c;product=hypothetical protein Cj1216c;protein_id=CAL35331.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1145228	1145908	.	-	.	ID=gene-Cj1217c;Name=Cj1217c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1217c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1145228	1145908	.	-	0	ID=cds-CAL35332.1;Parent=gene-Cj1217c;Dbxref=EnsemblGenomes-Gn:Cj1217c,EnsemblGenomes-Tr:CAL35332,InterPro:IPR003730,InterPro:IPR011324,NCBI_GP:CAL35332.1;Name=CAL35332.1;Note=Original (2000) note: Cj1217c%2C unknown%2C len: 226 aa%3B similar to hypothetical proteins e.g. YFIH_ECOLI (243 aa)%2C fasta scores%3B opt: 262 z-score: 319.9 E(): 1.6e-10%2C30.3%25 identity in 185 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02578 Uncharacterised ACR%2C YfiH family COG1496 identified within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02578;locus_tag=Cj1217c;product=conserved hypothetical protein Cj1217c;protein_id=CAL35332.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1145234	1145893	.	-	.	ID=id-Cj1217c;Note=HMMPfam hit to PF02578%2C Uncharacterised ACR%2C YfiH family COG1496%2C score 2.3e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF02578;locus_tag=Cj1217c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1145872	1146483	.	-	.	ID=gene-Cj1218c;Name=ribA;gbkey=Gene;gene=ribA;gene_biotype=protein_coding;locus_tag=Cj1218c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1145872	1146483	.	-	0	ID=cds-CAL35333.1;Parent=gene-Cj1218c;Dbxref=EnsemblGenomes-Gn:Cj1218c,EnsemblGenomes-Tr:CAL35333,GOA:Q0P938,InterPro:IPR001783,InterPro:IPR017938,InterPro:IPR023366,InterPro:IPR026017,UniProtKB/TrEMBL:Q0P938,NCBI_GP:CAL35333.1;Name=CAL35333.1;Note=Original (2000) note: Cj1218c%2C ribA%2C probable riboflavin synthase alpha chain%2C len: 203 aa%3B similar to e.g. RISA_BACSU riboflavin synthase alpha chain (EC 2.5.1.9) (215 aa)%2C fasta scores%3B opt: 369 z-score: 435.1 E(): 6.2e-17%2C 32.7%25 identity in 208 aa overlap. 47.6%25 identity to HP1574. Contains Pfam match to entry PF00677 Lum_binding%2C Lumazine binding domain%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Riboflavin%3B~PMID:7473709%2C PMID:9515916%2C PMID:11024263;gbkey=CDS;gene=ribA;inference=protein motif:Pfam:PF00677;locus_tag=Cj1218c;product=putative riboflavin synthase alpha chain;protein_id=CAL35333.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1145962	1146216	.	-	.	ID=id-Cj1218c;Note=HMMPfam hit to PF00677%2C Lumazine binding domain%2Cscore 2.3e-25;gbkey=misc_feature;gene=ribA;inference=protein motif:Pfam:PF00677;locus_tag=Cj1218c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1146492	1149032	.	-	.	ID=gene-Cj1219c;Name=Cj1219c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1219c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1146492	1149032	.	-	0	ID=cds-CAL35334.1;Parent=gene-Cj1219c;Dbxref=EnsemblGenomes-Gn:Cj1219c,EnsemblGenomes-Tr:CAL35334,UniProtKB/TrEMBL:Q0P937,NCBI_GP:CAL35334.1;Name=CAL35334.1;Note=Original (2000) note: Cj1219c%2C probable periplasmic protein%2C len: 846 aa%3B 27.3%25 identity to HP0358. Weak similarity to FLID_ECOLI flagellar hook-associated protein 2 (467 aa)%2C fasta scores%3B opt: 168 z-score: 180.0 E(): 0.0099%2C 24.2%25 identity in 446 aa overlap%2C and to Cj0530 (22.1%25 identity in 891 aa overlap). Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1219c;product=putative periplasmic protein;protein_id=CAL35334.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1148952	1149020	.	-	.	ID=id-Cj1219c;Note=1 probable transmembrane helix predicted for Cj1219c by TMHMM2.0 at aa 5-27;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1219c
gi|15791399|ref|NC_002163.1|	EMBL	minus_35_signal	1149110	1149115	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1149110..1149115;gbkey=regulatory;regulatory_class=minus_35_signal
gi|15791399|ref|NC_002163.1|	EMBL	minus_10_signal	1149133	1149138	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1149133..1149138;gbkey=regulatory;regulatory_class=minus_10_signal
gi|15791399|ref|NC_002163.1|	EMBL	gene	1149194	1149454	.	+	.	ID=gene-Cj1220;Name=groES;gbkey=Gene;gene=groES;gene_biotype=protein_coding;locus_tag=Cj1220
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1149194	1149454	.	+	0	ID=cds-CAL35335.1;Parent=gene-Cj1220;Dbxref=EnsemblGenomes-Gn:Cj1220,EnsemblGenomes-Tr:CAL35335,GOA:P56970,InterPro:IPR011032,InterPro:IPR020818,NCBI_GP:CAL35335.1;Name=CAL35335.1;Note=Original (2000) note: Cj1220%2C groES%2C 10 kD chaperonin (cpn10)%2C len: 86 aa%3B identical to TR:O69288 (EMBL:Y13334) C. jejuni groES (86 aa)%2C and highly similar to e.g. CH10_CLOAB 10 KD chaperonin (95 aa)%2C fasta scores%3B opt: 308 z-score: 421.2 E(): 3.7e-16%2C 54.3%25 identity in 94 aa overlap. 62.9%25 identity to HP0011. Contains Pfam match to entry PF00166 cpn10%2C Chaperonins 10 Kd subunit%3B~Updated (2006) note: Pfam motif PF00166 Chaperonin 10 Kd subunit identified within CDS. Further support given to product function. Characterised in Campylobacter jejuni%2C so putative not added to product function. Functional classification - Chaperones%2C chaperonins%2C heat shock%3B~PMID:10206714;gbkey=CDS;gene=groES;inference=protein motif:Pfam:PF00166;locus_tag=Cj1220;product=10 kD chaperonin (cpn10);protein_id=CAL35335.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1149197	1149451	.	+	.	ID=id-Cj1220;Note=HMMPfam hit to PF00166%2C Chaperonin 10 Kd subunit%2Cscore 5.4e-35;gbkey=misc_feature;gene=groES;inference=protein motif:Pfam:PF00166;locus_tag=Cj1220
gi|15791399|ref|NC_002163.1|	EMBL	gene	1149475	1151112	.	+	.	ID=gene-Cj1221;Name=groEL;gbkey=Gene;gene=groEL;gene_biotype=protein_coding;locus_tag=Cj1221
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1149475	1151112	.	+	0	ID=cds-CAL35336.1;Parent=gene-Cj1221;Dbxref=EnsemblGenomes-Gn:Cj1221,EnsemblGenomes-Tr:CAL35336,GOA:O69289,InterPro:IPR001844,InterPro:IPR002423,InterPro:IPR018370,InterPro:IPR027409,InterPro:IPR027413,NCBI_GP:CAL35336.1;Name=CAL35336.1;Note=Original (2000) note: Cj1221%2C groEL%2C 60 kD chaperonin (cpn60)%2C len: 545 aa%3B 99.6%25 identical to TR:O69289 (EMBL:Y13334) C. jejuni groEL (545 aa)%2C and highly similar to e.g. CH60_BORPE 60 kD chaperonin (547 aa)%2C fasta scores%3B opt: 2271 z-score: 2267.2 E(): 0%2C 64.9%25 identity in 547 aa overlap. 76.1%25 identity to HP0010. Contains PS00296 Chaperonins cpn60 signature%2C and Pfam match to entry PF00118 cpn60_TCP1%2C Chaperonins cpn60 and TCP-1%3B~Updated (2006) note: Pfam motif PF00118 TCP-1/cpn60 chaperonin family identified within CDS. Further support given to product function. Characterised in Campylobacter jejuni%2C so putative not added to product function. Functional classification - Chaperones%2C chaperonins%2C heat shock%3B~PMID:10206714;gbkey=CDS;gene=groEL;inference=protein motif:Prosite:PS00296;locus_tag=Cj1221;product=60 kD chaperonin (cpn60);protein_id=CAL35336.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1149538	1151043	.	+	.	ID=id-Cj1221;Note=HMMPfam hit to PF00118%2C TCP-1/cpn60 chaperonin family%2C score 5.5e-196;gbkey=misc_feature;gene=groEL;inference=protein motif:Pfam:PF00118;locus_tag=Cj1221
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1150684	1150719	.	+	.	ID=id-Cj1221-2;Note=PS00296 Chaperonins cpn60 signature;gbkey=misc_feature;gene=groEL;inference=protein motif:Prosite:PS00296;locus_tag=Cj1221
gi|15791399|ref|NC_002163.1|	EMBL	gene	1151155	1152345	.	-	.	ID=gene-Cj1222c;Name=dccS;gbkey=Gene;gene=dccS;gene_biotype=protein_coding;locus_tag=Cj1222c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1151155	1152345	.	-	0	ID=cds-CAL35337.1;Parent=gene-Cj1222c;Dbxref=EnsemblGenomes-Gn:Cj1222c,EnsemblGenomes-Tr:CAL35337,GOA:Q0P934,InterPro:IPR003594,InterPro:IPR003661,InterPro:IPR004358,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q0P934,NCBI_GP:CAL35337.1;Name=CAL35337.1;Note=Original (2000) note: Cj1222c%2C probable two-component sensor (histidine kinase)%2C len: 396 aa%3B similar to many sensor proteins e.g. RSTB_ECOLI sensor protein RSTB (433 aa)%2C fasta scores%3B opt: 226 z-score: 267.7 E(): 1.3e-07%2C 24.5%25 identity in 237 aa overlap. 28.5%25 identity to HP1364. Contains Pfam match to entry PF00512 signal%2C Signal carboxyl-terminal domain%2C and two possible membrane spanning domains%3B~Updated (2006) note: Pfam domains PF02518 Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase motif and PF00512 His Kinase A (phosphoacceptor) domain were identified within CDS. Prosite domain PS50109 HIS_KIN%2CHistidine kinase domain profile was also identified within CDS. Also%2C two probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised in Campylobacter jejuni. Literature search identified characterisation paper where Cj1222c and Cj1223c were shown to be required for optimal colonization and were termed dccRS (diminished capacity to colonize) two-component system. Functional classification - Signal transduction%3B~PMID:15554967;gbkey=CDS;gene=dccS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1222c;product=two-component sensor (histidine kinase);protein_id=CAL35337.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1151812	1151871	.	-	.	ID=id-Cj1222c;Note=2 probable transmembrane helices predicted for Cj1222c by TMHMM2.0 at aa 5-27 and 159-178;gbkey=misc_feature;gene=dccS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1222c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1152265	1152333	.	-	.	ID=id-Cj1222c;Note=2 probable transmembrane helices predicted for Cj1222c by TMHMM2.0 at aa 5-27 and 159-178;gbkey=misc_feature;gene=dccS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1222c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1151161	1151460	.	-	.	ID=id-Cj1222c-2;Note=HMMPfam hit to PF02518%2C Histidine kinase-%2C DNA gyrase B-%2C and HSP90%2C score 6e-20;gbkey=misc_feature;gene=dccS;inference=protein motif:Pfam:PF02518;locus_tag=Cj1222c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1151584	1151775	.	-	.	ID=id-Cj1222c-3;Note=HMMPfam hit to PF00512%2C His Kinase A (phosphoacceptor) domain%2C score 9.6e-05;gbkey=misc_feature;gene=dccS;inference=protein motif:Pfam:PF00512;locus_tag=Cj1222c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1152338	1153003	.	-	.	ID=gene-Cj1223c;Name=dccR;gbkey=Gene;gene=dccR;gene_biotype=protein_coding;locus_tag=Cj1223c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1152338	1153003	.	-	0	ID=cds-CAL35338.1;Parent=gene-Cj1223c;Dbxref=EnsemblGenomes-Gn:Cj1223c,EnsemblGenomes-Tr:CAL35338,GOA:Q0P933,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:Q0P933,NCBI_GP:CAL35338.1;Name=CAL35338.1;Note=Original (2000) note: Cj1223c%2C probable two-component regulator%2C len: 221 aa%3B similar to many e.g. CIAR_STRPN transcriptional regulatory protein CIAR (224 aa)%2C fasta scores%3B opt: 426 z-score: 522.6 E(): 8.2e-22%2C37.0%25 identity in 219 aa overlap. 39.4%25 identity to HP1365. Contains Pfam match to entry PF00072 response_reg%2CResponse regulator receiver domain%2C and Pfam match to entry PF00486 trans_reg_C%2C Transcriptional regulatory protein%2C C terminal%3B~Updated (2006) note: Characterised in Campylobacter jejuni. Literature search identified characterisation paper where Cj1222c and Cj1223c were shown to required for optimal colonization and were termed dccRS (diminished capacity to colonize) two-component system. Functional classification - Signal transduction%3B~PMID:15554967;gbkey=CDS;gene=dccR;inference=protein motif:Pfam:PF00486;locus_tag=Cj1223c;product=two-component regulator;protein_id=CAL35338.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1152344	1152559	.	-	.	ID=id-Cj1223c;Note=HMMPfam hit to PF00486%2C Transcriptional regulatory protein%2C C te%2C score 2.7e-18;gbkey=misc_feature;gene=dccR;inference=protein motif:Pfam:PF00486;locus_tag=Cj1223c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1152638	1152997	.	-	.	ID=id-Cj1223c-2;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 3e-25;gbkey=misc_feature;gene=dccR;inference=protein motif:Pfam:PF00072;locus_tag=Cj1223c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1153151	1153750	.	+	.	ID=gene-Cj1224;Name=Cj1224;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1224
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1153151	1153750	.	+	0	ID=cds-CAL35339.1;Parent=gene-Cj1224;Dbxref=EnsemblGenomes-Gn:Cj1224,EnsemblGenomes-Tr:CAL35339,GOA:Q0P932,InterPro:IPR012312,InterPro:IPR012827,InterPro:IPR016131,UniProtKB/TrEMBL:Q0P932,NCBI_GP:CAL35339.1;Name=CAL35339.1;Note=Original (2000) note: Cj1224%2C possible iron-binding protein%2C len: 199 aa%3B some simlarity to TR:Q58157 (EMBL:U67520) Methanococcus jannaschii MJ0747 (169 aa)%2Cfasta scores%3B opt: 230 z-score: 274.3 E(): 5.6e-08%2C 33.9%25 identity in 127 aa overlap. Weak similarity to members of the eukaryotic oxygen-binding hemerythrin family%2C e.g. HEMM_THEZO myohemerythrin (118 aa)%2C fasta scores%3B opt: 159 z-score: 196.6 E(): 0.0012%2C 30.5%25 identity in 118 aa overlap. Note that all of the iron-binding residues are conserved. No Hp match. Also similar to Cj0045c (29.2%25 identity in 202 aa overlap)%2C Cj0072c (pseudogene)%2C and Cj0241c (34.7%25 identity in 118 aa overlap)%3B~Updated (2006) note: Pfam domain (x2) PF01814 Hemerythrin HHE cation binding domain identified within CDS. Prosite domain PS00550 HEMERYTHRINS%2C Hemerythrin family signature also identified within CDS. Further support given to product function. Specific characterisation has not been carried out yet%2C so putative kept within product function. Functional classification -Transport/binding proteins - Cations;gbkey=CDS;inference=protein motif:Prosite:PS00550;locus_tag=Cj1224;product=putative iron-binding protein;protein_id=CAL35339.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1153184	1153354	.	+	.	ID=id-Cj1224;Note=HMMPfam hit to PF01814%2C Hemerythrin HHE cation binding domain%2C score 1.1e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF01814;locus_tag=Cj1224
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1153364	1153528	.	+	.	ID=id-Cj1224-2;Note=HMMPfam hit to PF01814%2C Hemerythrin HHE cation binding domain%2C score 0.00038;gbkey=misc_feature;inference=protein motif:Pfam:PF01814;locus_tag=Cj1224
gi|15791399|ref|NC_002163.1|	EMBL	gene	1153761	1154009	.	+	.	ID=gene-Cj1225;Name=Cj1225;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1225
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1153761	1154009	.	+	0	ID=cds-CAL35340.1;Parent=gene-Cj1225;Dbxref=EnsemblGenomes-Gn:Cj1225,EnsemblGenomes-Tr:CAL35340,GOA:Q0P931,InterPro:IPR010985,UniProtKB/TrEMBL:Q0P931,NCBI_GP:CAL35340.1;Name=CAL35340.1;Note=Original (2000) note: Cj1225%2C unknown%2C len: 82 aa%3B weak similarity to CDS from Borrelia burgdorferi repeated DNA element TR:Q45025 (EMBL:X87127) (210 aa)%2C fasta scores%3B opt: 117 z-score: 159.0 E(): 0.15%2C 33.3%25 identity in 78 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01402 Ribbon-helix-helix protein%2C copG family identified within CDS. No specific characterisation has yet been carried out yet. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01402;locus_tag=Cj1225;product=conserved hypothetical protein Cj1225;protein_id=CAL35340.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1154100	1154174	.	-	.	ID=gene-tRNA-Asn;Name=tRNA-Asn;gbkey=Gene;gene=tRNA-Asn;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1154100	1154174	.	-	.	ID=rna-tRNA-Asn;Parent=gene-tRNA-Asn;Note=tRNA Asn anticodon GTT%2C Cove score 84.50;gbkey=tRNA;gene=tRNA-Asn;product=tRNA-Asn
gi|15791399|ref|NC_002163.1|	EMBL	exon	1154100	1154174	.	-	.	ID=exon-tRNA-Asn-1;Parent=rna-tRNA-Asn;Note=tRNA Asn anticodon GTT%2C Cove score 84.50;gbkey=tRNA;gene=tRNA-Asn;product=tRNA-Asn
gi|15791399|ref|NC_002163.1|	EMBL	gene	1154267	1155514	.	-	.	ID=gene-Cj1226c;Name=Cj1226c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1226c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1154267	1155514	.	-	0	ID=cds-CAL35341.1;Parent=gene-Cj1226c;Dbxref=EnsemblGenomes-Gn:Cj1226c,EnsemblGenomes-Tr:CAL35341,GOA:Q0P930,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q0P930,NCBI_GP:CAL35341.1;Name=CAL35341.1;Note=Original (2000) note: Cj1226c%2C probable two-component sensor (histidine kinase)%2C len: 415 aa%3B similar to many sensor proteins e.g. CPXA_ECOLI sensor protein CPXA (457 aa)%2C fasta scores%3B opt: 205 z-score: 241.7 E(): 3.7e-06%2C 25.2%25 identity in 270 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00512 signal%2CSignal carboxyl-terminal domain%2C and two possible membrane spanning domains. Also similar to Cj1262 (31.0%25 identity in 410 aa overlap)%3B~Updated (2006) note: Pfam domains PF02518 Histidine kinase-%2C DNA gyrase B-%2C and HSP90-like ATPase motifs%2CPF00512 His Kinase A (phosphoacceptor) domain and PF00672 HAMP domain were all identified within CDS. Also%2C PS50109 HIS_KIN%2C Histidine kinase domain profile was identified within CDS. Further support given to product function. Product function modified to include motif information. Specific characterisation has not been carried out yet%2C so putative kept within product function. Functional classification - Signal transduction;gbkey=CDS;inference=protein motif:Prosite:PS50109;locus_tag=Cj1226c;product=putative two-component sensor (histidine kinase);protein_id=CAL35341.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1155044	1155112	.	-	.	ID=id-Cj1226c;Note=2 probable transmembrane helices predicted for Cj1226c by TMHMM2.0 at aa 6-28 and 135-157;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1226c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1155431	1155499	.	-	.	ID=id-Cj1226c;Note=2 probable transmembrane helices predicted for Cj1226c by TMHMM2.0 at aa 6-28 and 135-157;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1226c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1154285	1154587	.	-	.	ID=id-Cj1226c-2;Note=HMMPfam hit to PF02518%2C Histidine kinase-%2C DNA gyrase B-%2C and HSP90%2C score 3.2e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF02518;locus_tag=Cj1226c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1154708	1154884	.	-	.	ID=id-Cj1226c-3;Note=HMMPfam hit to PF00512%2C His Kinase A (phosphoacceptor) domain%2C score 3.7e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF00512;locus_tag=Cj1226c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1154894	1155106	.	-	.	ID=id-Cj1226c-4;Note=HMMPfam hit to PF00672%2C HAMP domain%2C score 7.2e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF00672;locus_tag=Cj1226c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1155511	1156185	.	-	.	ID=gene-Cj1227c;Name=Cj1227c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1227c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1155511	1156185	.	-	0	ID=cds-CAL35342.1;Parent=gene-Cj1227c;Dbxref=EnsemblGenomes-Gn:Cj1227c,EnsemblGenomes-Tr:CAL35342,GOA:Q0P929,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q0P929,NCBI_GP:CAL35342.1;Name=CAL35342.1;Note=Original (2000) note: Cj1227c%2C probable two-component regulator%2C len: 224 aa%3B identical to TR:Q46095 (EMBL:U27271) C. jejuni CDS (called ompR) (198 aa)%2C and similar to many e.g. YYCF_BACSU hypothetical 27.2 kd sensory transduction protein (235 aa)%2C fasta scores%3B opt: 490 z-score: 561.1 E(): 5.9e-24%2C 36.4%25 identity in 225 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C and Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal. Also similar to Cj1261 (50.7%25 identity in 223 aa overlap)%3B~Updated (2006) note: Similar to more than one type of two-component regulator with acceptable identity scores%2C so putative kept within product function. Literature search identified paper giving further clues to product function. Functional classification - Signal transduction%3B~PMID:15901688%2C PMID:2402249;gbkey=CDS;inference=protein motif:Pfam:PF00486;locus_tag=Cj1227c;product=putative two-component regulator;protein_id=CAL35342.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1155520	1155750	.	-	.	ID=id-Cj1227c;Note=HMMPfam hit to PF00486%2C Transcriptional regulatory protein%2C C te%2C score 6.9e-19;gbkey=misc_feature;inference=protein motif:Pfam:PF00486;locus_tag=Cj1227c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1155826	1156182	.	-	.	ID=id-Cj1227c-2;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 2.9e-31;gbkey=misc_feature;inference=protein motif:Pfam:PF00072;locus_tag=Cj1227c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1156261	1157679	.	-	.	ID=gene-Cj1228c;Name=htrA;gbkey=Gene;gene=htrA;gene_biotype=protein_coding;locus_tag=Cj1228c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1156261	1157679	.	-	0	ID=cds-CAL35343.1;Parent=gene-Cj1228c;Dbxref=EnsemblGenomes-Gn:Cj1228c,EnsemblGenomes-Tr:CAL35343,GOA:Q0P928,InterPro:IPR001478,InterPro:IPR001940,InterPro:IPR009003,InterPro:IPR011782,UniProtKB/TrEMBL:Q0P928,NCBI_GP:CAL35343.1;Name=CAL35343.1;Note=Original (2000) note: Cj1228c%2C htrA%2C probable serine protease (protease DO)%2C len: 472 aa%3B 99.2%25 identical to TR:Q46120 (EMBL:X82628) C. jejuni serine protease htrA (472 aa)%2C and similar to e.g. HTRA_ECOLI protease DO precursor (EC 3.4.21.-) (474 aa)%2C fasta scores%3B opt: 965 z-score: 1004.5 E(): 0%2C 39.5%25 identity in 461 aa overlap. 50.5%25 identity to HP1019. Contains Pfam match to entry PF00089 trypsin%2C and 2x Pfam match to entry PF00595 PDZ%2C PDZ domain%3B~Updated (2006) note: Characterised in Escherichia coli and Campylobacter jejuni%2C so putative not added to product function. Functional classification - Degradation of macromolecules - Proteins%2C peptides and glycopeptides%3B~PMID:15933023%2C PMID:16041056;gbkey=CDS;gene=htrA;inference=protein motif:Pfam:PF00595;locus_tag=Cj1228c;product=serine protease (protease DO);protein_id=CAL35343.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1156297	1156590	.	-	.	ID=id-Cj1228c;Note=HMMPfam hit to PF00595%2C PDZ domain (Also known as DHR or GLGF)%2C score 0.03;gbkey=misc_feature;gene=htrA;inference=protein motif:Pfam:PF00595;locus_tag=Cj1228c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1156615	1156875	.	-	.	ID=id-Cj1228c-2;Note=HMMPfam hit to PF00595%2C PDZ domain (Also known as DHR or GLGF)%2C score 1.7e-08;gbkey=misc_feature;gene=htrA;inference=protein motif:Pfam:PF00595;locus_tag=Cj1228c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1156882	1157412	.	-	.	ID=id-Cj1228c-3;Note=HMMPfam hit to PF00089%2C Trypsin%2C score 1.2e-20;gbkey=misc_feature;gene=htrA;inference=protein motif:Pfam:PF00089;locus_tag=Cj1228c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1157879	1158772	.	+	.	ID=gene-Cj1229;Name=cbpA;gbkey=Gene;gene=cbpA;gene_biotype=protein_coding;locus_tag=Cj1229
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1157879	1158772	.	+	0	ID=cds-CAL35344.1;Parent=gene-Cj1229;Dbxref=EnsemblGenomes-Gn:Cj1229,EnsemblGenomes-Tr:CAL35344,GOA:Q0P927,InterPro:IPR001623,InterPro:IPR002939,InterPro:IPR008971,InterPro:IPR018253,UniProtKB/TrEMBL:Q0P927,NCBI_GP:CAL35344.1;Name=CAL35344.1;Note=Original (2000) note: Cj1229%2C cbpA%2C probable curved-DNA binding protein%2C len: 297 aa%3B similar to e.g. CBPA_ECOLI curved DNA-binding protein (306 aa)%2C fatsa scores%3B opt: 514 z-score: 550.9 E(): 2.2e-23%2C 32.8%25 identity in 287 aa overlap. 52.0%25 identity to HP1024. Contains S00636 Nt-dnaJ domain signature%2C and Pfam match to entry PF00226 DnaJ%2C DnaJ domain%3B~Updated (2006) note: Pfam domain PF01556 DnaJ C terminal region identified within CDS. Further support given to product function. Characterised in Escherichia coli with marginal identity score. Putative kept within product function. Functional classification - Chaperones%2Cchaperonins%2C heat shock%3B~PMID:15184371%2C PMID:10947847%2C PMID:10551881;gbkey=CDS;gene=cbpA;inference=protein motif:Pfam:PF01556;locus_tag=Cj1229;product=putative curved-DNA binding protein;protein_id=CAL35344.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1157885	1158079	.	+	.	ID=id-Cj1229;Note=HMMPfam hit to PF00226%2C DnaJ domain%2C score 1.2e-40;gbkey=misc_feature;gene=cbpA;inference=protein motif:Pfam:PF00226;locus_tag=Cj1229
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1158008	1158067	.	+	.	ID=id-Cj1229-2;Note=PS00636 Nt-dnaJ domain signature;gbkey=misc_feature;gene=cbpA;inference=protein motif:Prosite:PS00636;locus_tag=Cj1229
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1158389	1158766	.	+	.	ID=id-Cj1229-3;Note=HMMPfam hit to PF01556%2C DnaJ C terminal region%2Cscore 6.2e-22;gbkey=misc_feature;gene=cbpA;inference=protein motif:Pfam:PF01556;locus_tag=Cj1229
gi|15791399|ref|NC_002163.1|	EMBL	gene	1158788	1159162	.	+	.	ID=gene-Cj1230;Name=hspR;gbkey=Gene;gene=hspR;gene_biotype=protein_coding;locus_tag=Cj1230
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1158788	1159162	.	+	0	ID=cds-CAL35345.1;Parent=gene-Cj1230;Dbxref=EnsemblGenomes-Gn:Cj1230,EnsemblGenomes-Tr:CAL35345,GOA:Q0P926,InterPro:IPR000551,InterPro:IPR009061,UniProtKB/TrEMBL:Q0P926,NCBI_GP:CAL35345.1;Name=CAL35345.1;Note=Original (2000) note: Cj1230%2C hspR%2C possible heat shock transcriptional regulator%2C len: 124 aa%3B similar to SPR_STRCO putative heat shock protein HSPR (151 aa)%2C fatsa scores%3B opt: 309 z-score: 385.2 E(): 3.7e-14%2C 42.4%25 identity in 118 aa overlap%2C and to other members of the MerR family of transcriptional regulators. 63.3%25 identity to HP1025. Contains PS00552 Bacterial regulatory proteins%2CmerR family signature%2C Pfam match to entry PF00376 merR%2Cand probable helix-turn-helix motif at aa 11-32 (Score 1333%2C +3.73 SD)%3B~Updated (2006) note: Characterised in Campylobacter jejuni (PMID:15758235). Putative removed from product function. Functional classification - Chaperones%2Cchaperonins%2C heat shock%3B~PMID: PMID:8801421%2C PMID:15758235%2CPMID:10564507%2C PMID:15720562;gbkey=CDS;gene=hspR;inference=protein motif:Prosite:PS00552;locus_tag=Cj1230;product=heat shock transcriptional regulator;protein_id=CAL35345.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1158818	1158928	.	+	.	ID=id-Cj1230;Note=HMMPfam hit to PF00376%2C MerR family regulatory protein%2C score 1.4e-07;gbkey=misc_feature;gene=hspR;inference=protein motif:Pfam:PF00376;locus_tag=Cj1230
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1158824	1158892	.	+	.	ID=id-Cj1230-2;Note=PS00552 Bacterial regulatory proteins%2C merR family signature;gbkey=misc_feature;gene=hspR;inference=protein motif:Prosite:PS00552;locus_tag=Cj1230
gi|15791399|ref|NC_002163.1|	EMBL	gene	1159168	1160793	.	+	.	ID=gene-Cj1231;Name=kefB;gbkey=Gene;gene=kefB;gene_biotype=protein_coding;locus_tag=Cj1231
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1159168	1160793	.	+	0	ID=cds-CAL35346.1;Parent=gene-Cj1231;Dbxref=EnsemblGenomes-Gn:Cj1231,EnsemblGenomes-Tr:CAL35346,GOA:Q0P925,InterPro:IPR003148,InterPro:IPR006153,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P925,NCBI_GP:CAL35346.1;Name=CAL35346.1;Note=Original (2000) note: Cj1231%2C kefB%2C probable glutathione-regulated potassium-efflux system protein%2Clen: 541 aa%3B similar to e.g. KEFC_ECOLI glutathione-regulated potassium-efflux system protein (620 aa)%2C fasta scores%3B opt: 803 z-score: 903.5 E(): 0%2C 30.8%25 identity in 494 aa overlap. 37.7%25 identity to HP0471%3B~Updated (2006) note: Pfam domains PF02254 TrkA-N domain and PF00999 Sodium/hydrogen exchanger family were identified within CDS. Also%2C thirteen probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Identity scores for matching Escherichia coli were marginal. Putative kept within product function. Functional classification -Transport/binding proteins - Cations%3B~PMID:2046548%2C PMID:1325937;gbkey=CDS;gene=kefB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1231;product=putative glutathione-regulated potassium-efflux system protein;protein_id=CAL35346.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1159177	1159233	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=1/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1159252	1159311	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=2/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1159321	1159380	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=3/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1159414	1159482	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=4/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1159510	1159566	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=5/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1159603	1159671	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=6/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1159699	1159767	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=7/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1159786	1159854	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=8/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1159864	1159917	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=9/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1159951	1160010	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=10/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1160038	1160106	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=11/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1160125	1160193	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=12/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1160221	1160289	.	+	.	ID=id-Cj1231;Note=13 probable transmembrane helices predicted for Cj1231 by TMHMM2.0 at aa 4-22%2C 29-48%2C 52-71%2C 83-105%2C115-133%2C 146-168%2C 178-200%2C 207-229%2C 233-250%2C 262-281%2C291-313%2C 320-342 and 352-374;gbkey=misc_feature;gene=kefB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1231;part=13/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1160374	1160697	.	+	.	ID=id-Cj1231-2;Note=HMMPfam hit to PF02254%2C TrkA-N domain%2C score 5.9e-08;gbkey=misc_feature;gene=kefB;inference=protein motif:Pfam:PF02254;locus_tag=Cj1231
gi|15791399|ref|NC_002163.1|	EMBL	gene	1160803	1161135	.	+	.	ID=gene-Cj1232;Name=Cj1232;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1232
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1160803	1161135	.	+	0	ID=cds-CAL35347.1;Parent=gene-Cj1232;Dbxref=EnsemblGenomes-Gn:Cj1232,EnsemblGenomes-Tr:CAL35347,UniProtKB/TrEMBL:Q0P924,NCBI_GP:CAL35347.1;Name=CAL35347.1;Note=Original (2000) note: Cj1232%2C unknown%2C len: 110 aa%3B no Hp match. Lys-rich. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj1232;product=hypothetical protein Cj1232;protein_id=CAL35347.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1161132	1161752	.	+	.	ID=gene-Cj1233;Name=Cj1233;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1233
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1161132	1161752	.	+	0	ID=cds-CAL35348.1;Parent=gene-Cj1233;Dbxref=EnsemblGenomes-Gn:Cj1233,EnsemblGenomes-Tr:CAL35348,GOA:Q0P923,InterPro:IPR006439,InterPro:IPR023214,UniProtKB/TrEMBL:Q0P923,NCBI_GP:CAL35348.1;Name=CAL35348.1;Note=Original (2000) note: Cj1233%2C probable hydrolase%2Clen: 206 aa%3B similar to e.g. GPH_ECOLI phosphoglycolate phosphatase (252 aa)%2C fasta scores%3B opt: 177 z-score: 216.3 E(): 9.5e-05%2C 27.6%25 identity in 199 aa overlap. No Hp match. Contains Pfam match to entry PF00702 Hydrolase%2Chaloacid dehalogenase-like hydrolase. Also similar to Cj1477c (27.3%25 identity in 205 aa overlap)%3B~Updated (2006) note: Characterisation work within Escherichia coli%2C however%2C identity scores were marginal. Product modified to more specific family member based on motif matches. Putative kept within product function. Functional classification - Misc%3B~PMID:13129953%2C PMID:10572959;gbkey=CDS;inference=protein motif:Pfam:PF00702;locus_tag=Cj1233;product=putative HAD-superfamily hydrolase;protein_id=CAL35348.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1161132	1161680	.	+	.	ID=id-Cj1233;Note=HMMPfam hit to PF00702%2C haloacid dehalogenase-like hydrolase%2C score 4.5e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF00702;locus_tag=Cj1233
gi|15791399|ref|NC_002163.1|	EMBL	gene	1161808	1163802	.	+	.	ID=gene-Cj1234;Name=glyS;gbkey=Gene;gene=glyS;gene_biotype=protein_coding;locus_tag=Cj1234
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1161808	1163802	.	+	0	ID=cds-CAL35349.1;Parent=gene-Cj1234;Dbxref=EnsemblGenomes-Gn:Cj1234,EnsemblGenomes-Tr:CAL35349,GOA:Q0P922,InterPro:IPR006194,InterPro:IPR015944,UniProtKB/TrEMBL:Q0P922,NCBI_GP:CAL35349.1;Name=CAL35349.1;Note=Original (2000) note: Cj1234%2C glyS%2C probable glycyl-tRNA synthetase beta chain%2C len: 664 aa%3B similar to e.g. SYGB_BACSU glycyl-tRNA synthetase beta chain (EC 6.1.1.14) (679 aa)%2C fasta scores%3B opt: 1252 z-score: 1414.7 E(): 0%2C 35.9%25 identity in 682 aa overlap. 42.9%25 identity to HP0972%3B~Updated (2006) note: Pfam domain PF02092 Glycyl-tRNA synthetase beta subunit identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:6309809;gbkey=CDS;gene=glyS;inference=protein motif:Pfam:PF02092;locus_tag=Cj1234;product=glycyl-tRNA synthetase beta chain;protein_id=CAL35349.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1161817	1163430	.	+	.	ID=id-Cj1234;Note=HMMPfam hit to PF02092%2C Glycyl-tRNA synthetase beta subunit%2C score 6.5e-195;gbkey=misc_feature;gene=glyS;inference=protein motif:Pfam:PF02092;locus_tag=Cj1234
gi|15791399|ref|NC_002163.1|	EMBL	gene	1163799	1164620	.	+	.	ID=gene-Cj1235;Name=Cj1235;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1235
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1163799	1164620	.	+	0	ID=cds-CAL35350.1;Parent=gene-Cj1235;Dbxref=EnsemblGenomes-Gn:Cj1235,EnsemblGenomes-Tr:CAL35350,InterPro:IPR011055,InterPro:IPR016047,UniProtKB/TrEMBL:Q0P921,NCBI_GP:CAL35350.1;Name=CAL35350.1;Note=Original (2000) note: Cj1235%2C probable periplasmic protein%2C len: 273 aa%3B similar to many e.g. TR:Q57503 (EMBL:U07173) Vibrio cholerae ToxR-activated gene%2C tagE (302 aa)%2C fasta scores%3B opt: 319 z-score: 373.7 E(): 1.6e-13%2C 37.0%25 identity in 192 aa overlap%2C and YEBA_ECOLI (419 aa)%2C fasta scores%3B opt: 299 z-score: 348.5 E(): 4.1e-12%2C 44.3%25 identity in 115 aa overlap. No Hp ortholog. Also similar to Cj0131 (30.2%25 identity in 222 aa overlap)%2CCj1087c (40.7%25 identity in 123 aa overlap)%2C and Cj1215 (29.6%25 identity in 206 aa overlap)%3B~Updated (2006) note: Pfam domain PF01551 Peptidase family M23 identified within CDS. Further support given to product function. Product modified to more specific family member based on motif results. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification -Degradation of macromolecules - Proteins%2C peptides and glycopeptides;gbkey=CDS;inference=protein motif:Pfam:PF01551;locus_tag=Cj1235;product=putative peptidase M23 family protein;protein_id=CAL35350.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1164294	1164581	.	+	.	ID=id-Cj1235;Note=HMMPfam hit to PF01551%2C Peptidase family M23%2C score 6.7e-45;gbkey=misc_feature;inference=protein motif:Pfam:PF01551;locus_tag=Cj1235
gi|15791399|ref|NC_002163.1|	EMBL	gene	1164617	1165567	.	+	.	ID=gene-Cj1236;Name=Cj1236;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1236
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1164617	1165567	.	+	0	ID=cds-CAL35351.1;Parent=gene-Cj1236;Dbxref=EnsemblGenomes-Gn:Cj1236,EnsemblGenomes-Tr:CAL35351,InterPro:IPR003788,InterPro:IPR029063,UniProtKB/TrEMBL:Q0P920,NCBI_GP:CAL35351.1;Name=CAL35351.1;Note=Original (2000) note: Cj1236%2C unknown%2C len: 316 aa%3B similar to hypothetical proteins e.g. TR:O66873 (EMBL:AE000698) Aquifex aeolicus AQ_622 (320 aa)%2C fasta scores%3B opt: 263 z-score: 318.9 E(): 1.8e-10%2C 23.8%25 identity in 323 aa overlap. 32.4%25 identity to HP0812%3B~Updated (2006) note: Pfam domain PF02636 Uncharacterized ACR%2C COG1565 identified within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02636;locus_tag=Cj1236;product=conserved hypothetical protein Cj1236;protein_id=CAL35351.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1164737	1165459	.	+	.	ID=id-Cj1236;Note=HMMPfam hit to PF02636%2C Uncharacterized ACR%2CCOG1565%2C score 2.2e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF02636;locus_tag=Cj1236
gi|15791399|ref|NC_002163.1|	EMBL	gene	1165564	1166538	.	-	.	ID=gene-Cj1237c;Name=Cj1237c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1237c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1165564	1166538	.	-	0	ID=cds-CAL35352.1;Parent=gene-Cj1237c;Dbxref=EnsemblGenomes-Gn:Cj1237c,EnsemblGenomes-Tr:CAL35352,InterPro:IPR003695,UniProtKB/TrEMBL:Q0P919,NCBI_GP:CAL35352.1;Name=CAL35352.1;Note=Original (2000) note: Cj1237c%2C possible phosphatase%2C len: 324 aa%3B weak similarity to e.g. GPPA_ECOLI guanosine-5'-triphosphate%2C3'-diphosphate pyrophosphatase (494 aa)%2C fasta scores%3B opt: 174 z-score: 201.9 E(): 0.0006%2C 25.7%25 identity in 323 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02541 Ppx/GppA phosphatase family was identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function (previously was posssible). Functional classification -Misc;gbkey=CDS;inference=protein motif:Pfam:PF02541;locus_tag=Cj1237c;product=putative phosphatase;protein_id=CAL35352.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1165573	1166499	.	-	.	ID=id-Cj1237c;Note=HMMPfam hit to PF02541%2C Ppx/GppA phosphatase family%2C score 1.7e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF02541;locus_tag=Cj1237c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1166594	1167367	.	+	.	ID=gene-Cj1238;Name=pdxJ;gbkey=Gene;gene=pdxJ;gene_biotype=protein_coding;locus_tag=Cj1238
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1166594	1167367	.	+	0	ID=cds-CAL35353.1;Parent=gene-Cj1238;Dbxref=EnsemblGenomes-Gn:Cj1238,EnsemblGenomes-Tr:CAL35353,GOA:Q9PN59,InterPro:IPR004569,InterPro:IPR013785,PDB:3O6C,PDB:3O6D,NCBI_GP:CAL35353.1;Name=CAL35353.1;Note=Original (2000) note: Cj1238%2C pdxJ%2C probable pyridoxal phosphate biosynthetic protein%2C len: 257 aa%3B similar to e.g. PDXJ_ECOLI pyridoxal phosphate biosynthetic protein PDXJ (242 aa)%2C fasta scores%3B opt: 450 z-score: 536.6 E(): 1.4e-22%2C 44.6%25 identity in 258 aa overlap. 44.7%25 identity to HP1582%3B~Updated (2006) note: Pfam domain PF03740 Pyridoxal phosphate biosynthesis protein PdxJ identified within CDS. Further support given to product function. Characterised in Escherichia coli and with acceptable identity score. Further characterisation work has also been carried out in Escherichia coli%2C so putative was removed from product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Pyridoxine%3B~PMID:11286891%2C PMID:10944349%2C PMID:10225425;gbkey=CDS;gene=pdxJ;inference=protein motif:Pfam:PF03740;locus_tag=Cj1238;product=pyridoxal phosphate biosynthetic protein;protein_id=CAL35353.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1166594	1167364	.	+	.	ID=id-Cj1238;Note=HMMPfam hit to PF03740%2C Pyridoxal phosphate biosynthesis protein Pdx%2C score 7.6e-178;gbkey=misc_feature;gene=pdxJ;inference=protein motif:Pfam:PF03740;locus_tag=Cj1238
gi|15791399|ref|NC_002163.1|	EMBL	gene	1167364	1168458	.	+	.	ID=gene-Cj1239;Name=pdxA;gbkey=Gene;gene=pdxA;gene_biotype=protein_coding;locus_tag=Cj1239
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1167364	1168458	.	+	0	ID=cds-CAL35354.1;Parent=gene-Cj1239;Dbxref=EnsemblGenomes-Gn:Cj1239,EnsemblGenomes-Tr:CAL35354,GOA:Q9PN58,InterPro:IPR005255,InterPro:IPR024084,PDB:3TSN,NCBI_GP:CAL35354.1;Name=CAL35354.1;Note=Original (2000) note: Cj1239%2C pdxA%2C probable pyridoxal phosphate biosynthetic protein%2C len: 364 aa%3B similar to e.g. PDXA_ECOLI pyridoxal phosphate biosynthetic protein PDXA (329 aa)%2C fasta scores%3B opt: 226 z-score: 280.4 E(): 2.6e-08%2C 30.6%25 identity in 284 aa overlap. 43.0%25 identity to HP1583%3B~Updated (2006) note: Pfam domain PF04166 Pyridoxal phosphate biosynthetic protein PdxA identified within CDS. Further support given to product function. Characterised in Escherichia coli with marginal identity score. Recent work has led to product function being updated. Putative kept within product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Pyridoxine%3B~PMID:15026039%2C PMID:10225425;gbkey=CDS;gene=pdxA;inference=protein motif:Pfam:PF04166;locus_tag=Cj1239;product=putative 4-hydroxythreonine-4-phosphate dehydrogenase;protein_id=CAL35354.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1167427	1168437	.	+	.	ID=id-Cj1239;Note=HMMPfam hit to PF04166%2C Pyridoxal phosphate biosynthetic protein Pdx%2C score 1.4e-135;gbkey=misc_feature;gene=pdxA;inference=protein motif:Pfam:PF04166;locus_tag=Cj1239
gi|15791399|ref|NC_002163.1|	EMBL	gene	1168448	1169050	.	-	.	ID=gene-Cj1240c;Name=Cj1240c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1240c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1168448	1169050	.	-	0	ID=cds-CAL35355.1;Parent=gene-Cj1240c;Dbxref=EnsemblGenomes-Gn:Cj1240c,EnsemblGenomes-Tr:CAL35355,UniProtKB/TrEMBL:Q0P916,NCBI_GP:CAL35355.1;Name=CAL35355.1;Note=Original (2000) note: Cj1240c%2C probable periplasmic protein%2C len: 200 aa%3B no Hp match. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1240c;product=putative periplasmic protein;protein_id=CAL35355.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1169163	1170362	.	+	.	ID=gene-Cj1241;Name=Cj1241;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1241
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1169163	1170362	.	+	0	ID=cds-CAL35356.1;Parent=gene-Cj1241;Dbxref=EnsemblGenomes-Gn:Cj1241,EnsemblGenomes-Tr:CAL35356,GOA:Q0P915,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0P915,NCBI_GP:CAL35356.1;Name=CAL35356.1;Note=Original (2000) note: Cj1241%2C probable transmembrane transport protein%2C len: 399 aa%3B similar to e.g. ARAJ_ECOLI protein ARAJ precursor (394 aa)%2C fasta scores%3B opt: 579 z-score: 680.4 E(): 1.3e-30%2C 28.8%25 identity in 385 aa overlap%2C and CMLR_STRLI chloramphenicol resistance protein (392 aa)%2C fasta scores%3B opt: 444 z-score: 523.2 E(): 7.6e-22%2C 25.5%25 identity in 380 aa overlap. 27.4%25 identity to HP1185%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Also%2Ctwelve probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member based on motif match. No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Literature search identified paper giving further clues to product function. Functional classification - Transport/binding proteins - Other%3B~PMID:16048946;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1241;product=putative MFS (Major Facilitator Superfamily) transporter protein;protein_id=CAL35356.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1169181	1169249	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=1/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1169292	1169360	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=2/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1169379	1169432	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=3/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1169460	1169528	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=4/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1169547	1169615	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=5/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1169628	1169696	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=6/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1169769	1169837	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=7/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1169880	1169939	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=8/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1169964	1170032	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=9/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1170045	1170113	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=10/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1170174	1170242	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=11/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1170252	1170305	.	+	.	ID=id-Cj1241;Note=12 probable transmembrane helices predicted for Cj1241 by TMHMM2.0 at aa 7-29%2C 44-66%2C 73-90%2C 100-122%2C129-151%2C 156-178%2C 203-225%2C 240-259%2C 268-290%2C 295-317%2C338-360 and 364-381;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1241;part=12/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1169193	1170230	.	+	.	ID=id-Cj1241-2;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 2.7e-39;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj1241
gi|15791399|ref|NC_002163.1|	EMBL	gene	1170418	1170738	.	+	.	ID=gene-Cj1242;Name=Cj1242;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1242
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1170418	1170738	.	+	0	ID=cds-CAL35357.1;Parent=gene-Cj1242;Dbxref=EnsemblGenomes-Gn:Cj1242,EnsemblGenomes-Tr:CAL35357,UniProtKB/TrEMBL:Q0P914,NCBI_GP:CAL35357.1;Name=CAL35357.1;Note=Original (2000) note: Cj1242%2C unknown%2C len: 106 aa%3B no Hp match%3B~Updated (2006) note: Literature search identified papers giving potential clues to product function. Functional classification - Unknown%3B~PMID:14985343%2C PMID:15812042;gbkey=CDS;locus_tag=Cj1242;product=hypothetical protein Cj1242;protein_id=CAL35357.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1170922	1171944	.	+	.	ID=gene-Cj1243;Name=Cj1243;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1243
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1170922	1171944	.	+	0	ID=cds-CAL35358.1;Parent=gene-Cj1243;Dbxref=EnsemblGenomes-Gn:Cj1243,EnsemblGenomes-Tr:CAL35358,GOA:Q9PN54,InterPro:IPR000257,InterPro:IPR006361,NCBI_GP:CAL35358.1;Name=CAL35358.1;Note=Original (2000) note: Cj1243%2C hemE%2C probable uroporphyrinogen decarboxylase%2C len: 340 aa%3B similar to e.g. DCUP_ECOLI uroporphyrinogen decarboxylase (EC 4.1.1.37) (354 aa)%2C fasta scores%3B opt: 1005 z-score: 1158.6 E(): 0%2C 45.2%25 identity in 343 aa overlap. 64.4%25 identity to HP0604. Contains PS00906 Uroporphyrinogen decarboxylase signature 1%2C and Pfam match to entry PF01208 URO-D%2C Uroporphyrinogen decarboxylase (URO-D)%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Heme%3B~PMID:8224882;gbkey=CDS;inference=protein motif:Prosite:PS00906;locus_tag=Cj1243;product=uroporphyrinogen decarboxylase;protein_id=CAL35358.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1170928	1171932	.	+	.	ID=id-Cj1243;Note=HMMPfam hit to PF01208%2C Uroporphyrinogen decarboxylase (URO-D)%2C score 2.1e-132;gbkey=misc_feature;inference=protein motif:Pfam:PF01208;locus_tag=Cj1243
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1170967	1170996	.	+	.	ID=id-Cj1243-2;Note=PS00906 Uroporphyrinogen decarboxylase signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00906;locus_tag=Cj1243
gi|15791399|ref|NC_002163.1|	EMBL	gene	1171941	1172843	.	+	.	ID=gene-Cj1244;Name=Cj1244;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1244
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1171941	1172843	.	+	0	ID=cds-CAL35359.1;Parent=gene-Cj1244;Dbxref=EnsemblGenomes-Gn:Cj1244,EnsemblGenomes-Tr:CAL35359,GOA:Q0P912,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,UniProtKB/TrEMBL:Q0P912,NCBI_GP:CAL35359.1;Name=CAL35359.1;Note=Original (2000) note: Cj1244%2C unknown%2C len: 300 aa%3B similar to hypothetical proteins e.g. YD12_METJA Methanococcus jannaschii MJ1312 (321 aa)%2C fasta scores%3B opt: 436 z-score: 499.9 E(): 1.5e-20%2C 30.7%25 identity in 313 aa overlap. 40.1%25 identity to HP0117%3B~Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation carried out yet%2C so putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Pfam:PF04055;locus_tag=Cj1244;product=putative radical SAM domain protein;protein_id=CAL35359.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1172004	1172516	.	+	.	ID=id-Cj1244;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 4.1e-16;gbkey=misc_feature;inference=protein motif:Pfam:PF04055;locus_tag=Cj1244
gi|15791399|ref|NC_002163.1|	EMBL	gene	1172840	1174036	.	-	.	ID=gene-Cj1245c;Name=Cj1245c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1245c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1172840	1174036	.	-	0	ID=cds-CAL35360.1;Parent=gene-Cj1245c;Dbxref=EnsemblGenomes-Gn:Cj1245c,EnsemblGenomes-Tr:CAL35360,UniProtKB/TrEMBL:Q0P911,NCBI_GP:CAL35360.1;Name=CAL35360.1;Note=Original (2000) note: Cj1245c%2C possible membrane protein%2C len: 398 aa%3B no Hp match%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1245c;product=putative membrane protein;protein_id=CAL35360.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1173884	1173937	.	-	.	ID=id-Cj1245c;Note=2 probable transmembrane helices predicted for Cj1245c by TMHMM2.0 at aa 2-19 and 34-51;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1245c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1173980	1174033	.	-	.	ID=id-Cj1245c;Note=2 probable transmembrane helices predicted for Cj1245c by TMHMM2.0 at aa 2-19 and 34-51;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1245c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	1174038	1175840	.	-	.	ID=gene-Cj1246c;Name=uvrC;gbkey=Gene;gene=uvrC;gene_biotype=protein_coding;locus_tag=Cj1246c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1174038	1175840	.	-	0	ID=cds-CAL35361.1;Parent=gene-Cj1246c;Dbxref=EnsemblGenomes-Gn:Cj1246c,EnsemblGenomes-Tr:CAL35361,GOA:Q9PN51,InterPro:IPR000305,InterPro:IPR001162,InterPro:IPR001943,InterPro:IPR004791,InterPro:IPR010994,InterPro:IPR027299,NCBI_GP:CAL35361.1;Name=CAL35361.1;Note=Original (2000) note: Cj1246c%2C uvrC%2C probable excinuclease ABC subunit C%2C len: 600 aa%3B similar to e.g. UVRC_BACSU excinuclease ABC subunit C (598 aa)%2C fasta scores%3B opt: 911 z-score: 1033.8 E(): 0%2C 32.4%25 identity in 602 aa overlap. 46.0%25 identity to HP0821%3B~Updated (2006) note: Pfam domain PF02151 UvrB/uvrC motif and PF01541 GIY-YIG catalytic domain were both identified within CDS. Further support given to product function. Characterised in Bacillus subtilis with marginal identity score. Putative not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:8969504%2C PMID:2559145;gbkey=CDS;gene=uvrC;inference=protein motif:Pfam:PF02151;locus_tag=Cj1246c;product=excinuclease ABC subunit C;protein_id=CAL35361.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1175127	1175234	.	-	.	ID=id-Cj1246c;Note=HMMPfam hit to PF02151%2C UvrB/uvrC motif%2C score 2.9e-08;gbkey=misc_feature;gene=uvrC;inference=protein motif:Pfam:PF02151;locus_tag=Cj1246c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1175526	1175795	.	-	.	ID=id-Cj1246c-2;Note=HMMPfam hit to PF01541%2C GIY-YIG catalytic domain%2Cscore 1.4e-29;gbkey=misc_feature;gene=uvrC;inference=protein motif:Pfam:PF01541;locus_tag=Cj1246c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1175833	1176327	.	-	.	ID=gene-Cj1247c;Name=Cj1247c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1247c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1175833	1176327	.	-	0	ID=cds-CAL35362.1;Parent=gene-Cj1247c;Dbxref=EnsemblGenomes-Gn:Cj1247c,EnsemblGenomes-Tr:CAL35362,UniProtKB/TrEMBL:Q0P909,NCBI_GP:CAL35362.1;Name=CAL35362.1;Note=Original (2000) note: Cj1247c%2C unknown%2C len: 164 aa%3B 27.1%25 identity to HP0820. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1247c;product=hypothetical protein Cj1247c;protein_id=CAL35362.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1176466	1178001	.	+	.	ID=gene-Cj1248;Name=guaA;gbkey=Gene;gene=guaA;gene_biotype=protein_coding;locus_tag=Cj1248
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1176466	1178001	.	+	0	ID=cds-CAL35363.1;Parent=gene-Cj1248;Dbxref=EnsemblGenomes-Gn:Cj1248,EnsemblGenomes-Tr:CAL35363,GOA:Q9PN49,InterPro:IPR001674,InterPro:IPR004739,InterPro:IPR014729,InterPro:IPR017926,InterPro:IPR022310,InterPro:IPR022955,InterPro:IPR025777,InterPro:IPR029062,NCBI_GP:CAL35363.1;Name=CAL35363.1;Note=Original (2000) note: Cj1248%2C guaA%2C probable GMP synthase (glutamine-hydrolyzing)%2C len: 511 aa%3B highly similar to many e.g. GUAA_BACSU GMP synthase (glutamine-hydrolyzing) (EC 6.3.5.2) (513 aa)%2C fasta scores%3B opt: 1930 z-score: 2263.5 E(): 0%2C 57.0%25 identity in 507 aa overlap. 62.4%25 identity to HP0409. Contains PS00442 Glutamine amidotransferases class-I active site%2CPfam match to entry PF00117 GATase%2C Glutamine amidotransferases class-I%2C and Pfam match to entry PF00958 GMP_synt_C%2C GMP synthase%2C C-terminal domain%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores%2C so putative not added to product function. Functional classification - Purine ribonucleotide biosynthesis%3B~PMID:1312531%2C PMID:8969499%2C PMID:8548458%2CPMID:10856643;gbkey=CDS;gene=guaA;inference=protein motif:Prosite:PS00442;locus_tag=Cj1248;product=GMP synthase (glutamine-hydrolyzing);protein_id=CAL35363.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1176484	1177032	.	+	.	ID=id-Cj1248;Note=HMMPfam hit to PF00117%2C Glutamine amidotransferase class-I%2C score 1.7e-57;gbkey=misc_feature;gene=guaA;inference=protein motif:Pfam:PF00117;locus_tag=Cj1248
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1176694	1176729	.	+	.	ID=id-Cj1248-2;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=guaA;inference=protein motif:Prosite:PS00442;locus_tag=Cj1248
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1177636	1177995	.	+	.	ID=id-Cj1248-3;Note=HMMPfam hit to PF00958%2C GMP synthase C terminal domain%2C score 1e-65;gbkey=misc_feature;gene=guaA;inference=protein motif:Pfam:PF00958;locus_tag=Cj1248
gi|15791399|ref|NC_002163.1|	EMBL	gene	1178087	1179547	.	+	.	ID=gene-Cj1249;Name=Cj1249;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1249
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1178087	1179547	.	+	0	ID=cds-CAL35364.1;Parent=gene-Cj1249;Dbxref=EnsemblGenomes-Gn:Cj1249,EnsemblGenomes-Tr:CAL35364,UniProtKB/TrEMBL:Q0P907,NCBI_GP:CAL35364.1;Name=CAL35364.1;Note=Original (2000) note: Cj1249%2C unknown%2C len: 486 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj1249;product=hypothetical protein Cj1249;protein_id=CAL35364.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1179787	1181037	.	+	.	ID=gene-Cj1250;Name=purD;gbkey=Gene;gene=purD;gene_biotype=protein_coding;locus_tag=Cj1250
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1179787	1181037	.	+	0	ID=cds-CAL35365.1;Parent=gene-Cj1250;Dbxref=EnsemblGenomes-Gn:Cj1250,EnsemblGenomes-Tr:CAL35365,GOA:Q9PN47,InterPro:IPR000115,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,InterPro:IPR020559,InterPro:IPR020560,InterPro:IPR020561,InterPro:IPR020562,NCBI_GP:CAL35365.1;Name=CAL35365.1;Note=Original (2000) note: Cj1250%2C purD%2C probable phosphoribosylamine--glycine ligase%2C len: 416 aa%3B similar to e.g. PUR2_ECOLI phosphoribosylamine--glycine ligase (EC 6.3.4.13) (429 aa)%2C fasta scores%3B opt: 981 z-score: 1186.4 E(): 0%2C 39.3%25 identity in 428 aa overlap. 38.2%25 identity to HP1218. Contains Pfam match to entry PF01071 GARS%2CPhosphoribosylglycinamide synthetase (GARS)%3B~Updated (2006) note: Pfam domain PF02844%2C PF01071%2CPF02842 and PF02843 Phosphoribosylglycinamide synthetase%2CN domain%2C B domain%2C C domain and ATP-grasp (A) domains were identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Purine ribonucleotide biosynthesis%3B~PMID9843369%2C PMID:2687276;gbkey=CDS;gene=purD;inference=protein motif:Pfam:PF02844;locus_tag=Cj1250;product=phosphoribosylamine--glycine ligase;protein_id=CAL35365.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1179787	1180080	.	+	.	ID=id-Cj1250;Note=HMMPfam hit to PF02844%2C Phosphoribosylglycinamide synthetase%2C N doma%2C score 1.3e-23;gbkey=misc_feature;gene=purD;inference=protein motif:Pfam:PF02844;locus_tag=Cj1250
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1180084	1180332	.	+	.	ID=id-Cj1250-2;Note=HMMPfam hit to PF02842%2C Phosphoribosylglycinamide synthetase%2C B doma%2C score 8.3e-40;gbkey=misc_feature;gene=purD;inference=protein motif:Pfam:PF02842;locus_tag=Cj1250
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1180333	1180746	.	+	.	ID=id-Cj1250-3;Note=HMMPfam hit to PF01071%2C Phosphoribosylglycinamide synthetase%2C ATP-gr%2C score 5.4e-67;gbkey=misc_feature;gene=purD;inference=protein motif:Pfam:PF01071;locus_tag=Cj1250
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1180756	1181031	.	+	.	ID=id-Cj1250-4;Note=HMMPfam hit to PF02843%2C Phosphoribosylglycinamide synthetase%2C C doma%2C score 4.1e-34;gbkey=misc_feature;gene=purD;inference=protein motif:Pfam:PF02843;locus_tag=Cj1250
gi|15791399|ref|NC_002163.1|	EMBL	gene	1181034	1181486	.	+	.	ID=gene-Cj1251;Name=Cj1251;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1251
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1181034	1181486	.	+	0	ID=cds-CAL35366.1;Parent=gene-Cj1251;Dbxref=EnsemblGenomes-Gn:Cj1251,EnsemblGenomes-Tr:CAL35366,InterPro:IPR010432,UniProtKB/TrEMBL:Q0P905,NCBI_GP:CAL35366.1;Name=CAL35366.1;Note=Original (2000) note: Cj1251%2C unknown%2C len: 150 aa%3B similar to hypothetical proteins e.g. TR:Q56614 (EMBL:U39068) Vibrio cholerae orfY (145 aa)%2C fasta scores%3B opt: 220 z-score: 291.8 E(): 5.9e-09%2C 28.6%25 identity in 140 aa overlap. 27.9%25 identity to HP1217%3B~Updated (2006) note: Pfam domain PF06271 RDD family identified within CDS. Also%2C two probable transmembrane helices predicted by TMHMM2.0. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1251;product=conserved hypothetical protein Cj1251;protein_id=CAL35366.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1181079	1181477	.	+	.	ID=id-Cj1251;Note=HMMPfam hit to PF06271%2C RDD family%2C score 5.3e-39;gbkey=misc_feature;inference=protein motif:Pfam:PF06271;locus_tag=Cj1251
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1181100	1181159	.	+	.	ID=id-Cj1251-2;Note=2 probable transmembrane helices predicted for Cj1251 by TMHMM2.0 at aa 23-42 and 62-84;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1251;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1181217	1181285	.	+	.	ID=id-Cj1251-2;Note=2 probable transmembrane helices predicted for Cj1251 by TMHMM2.0 at aa 23-42 and 62-84;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1251;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1181476	1183524	.	+	.	ID=gene-Cj1252;Name=Cj1252;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1252
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1181476	1183524	.	+	0	ID=cds-CAL35367.1;Parent=gene-Cj1252;Dbxref=EnsemblGenomes-Gn:Cj1252,EnsemblGenomes-Tr:CAL35367,GOA:Q0P904,InterPro:IPR007543,UniProtKB/TrEMBL:Q0P904,NCBI_GP:CAL35367.1;Name=CAL35367.1;Note=Original (2000) note: Cj1252%2C probable periplasmic protein%2C len: 682 aa%3B some similarity to proteins involved in outer membrane permeability e.g. OSTA_ECOLI organic solvent tolerance protein precursor (784 aa)%2C fasta scores%3B opt: 223 z-score: 255.4 E(): 6.3e-07%2C 20.3%25 identity in 507 aa overlap. 27.9%25 identity to HP1216. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF04453 Organic solvent tolerance protein identified within CDS. No specific characterisation with acceptable identity score identified yet%2C so putative kept within product function. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Pfam:PF04453;locus_tag=Cj1252;product=putative periplasmic protein;protein_id=CAL35367.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1182232	1183278	.	+	.	ID=id-Cj1252;Note=HMMPfam hit to PF04453%2C Organic solvent tolerance protein%2C score 6.9e-85;gbkey=misc_feature;inference=protein motif:Pfam:PF04453;locus_tag=Cj1252
gi|15791399|ref|NC_002163.1|	EMBL	gene	1183594	1185753	.	+	.	ID=gene-Cj1253;Name=pnp;gbkey=Gene;gene=pnp;gene_biotype=protein_coding;locus_tag=Cj1253
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1183594	1185753	.	+	0	ID=cds-CAL35368.1;Parent=gene-Cj1253;Dbxref=EnsemblGenomes-Gn:Cj1253,EnsemblGenomes-Tr:CAL35368,GOA:Q0P903,InterPro:IPR001247,InterPro:IPR003029,InterPro:IPR004087,InterPro:IPR004088,InterPro:IPR012162,InterPro:IPR012340,InterPro:IPR015847,InterPro:IPR015848,InterPro:IPR020568,InterPro:IPR022967,InterPro:IPR027408,NCBI_GP:CAL35368.1;Name=CAL35368.1;Note=Original (2000) note: Cj1253%2C pnp%2C probable polyribonucleotide nucleotidyltransferase%2C len: 719 aa%3B similar to e.g. PNP_ECOLI polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) (711 aa)%2C fasta scores%3B opt: 1068 z-score: 1130.9 E(): 0%2C 38.9%25 identity in 730 aa overlap. 49.2%25 identity to HP1213. Contains Pfam match to entry PF00575 S1%2C S1 RNA binding domain%2C Pfam match to entry PF00013 KH-domain%2C KH domain family of RNA binding proteins%2C and Pfam match to entry PF01138 RNase_PH%2C Prokaryotic ribonuclease PH%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:16079137%2C PMID:2432069%2C PMID:10931296;gbkey=CDS;gene=pnp;inference=protein motif:Pfam:PF01138;locus_tag=Cj1253;product=polyribonucleotide nucleotidyltransferase;protein_id=CAL35368.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1183615	1184010	.	+	.	ID=id-Cj1253;Note=HMMPfam hit to PF01138%2C 3' exoribonuclease family%2Cdomain%2C score 3.8e-27;gbkey=misc_feature;gene=pnp;inference=protein motif:Pfam:PF01138;locus_tag=Cj1253
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1184017	1184292	.	+	.	ID=id-Cj1253-2;Note=HMMPfam hit to PF03725%2C 3' exoribonuclease family%2Cdomain%2C score 1.7e-07;gbkey=misc_feature;gene=pnp;inference=protein motif:Pfam:PF03725;locus_tag=Cj1253
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1184386	1184616	.	+	.	ID=id-Cj1253-3;Note=HMMPfam hit to PF03726%2C Polyribonucleotide nucleotidyltransferase%2C%2C score 3.1e-25;gbkey=misc_feature;gene=pnp;inference=protein motif:Pfam:PF03726;locus_tag=Cj1253
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1184623	1185024	.	+	.	ID=id-Cj1253-4;Note=HMMPfam hit to PF01138%2C 3' exoribonuclease family%2Cdomain%2C score 4.7e-47;gbkey=misc_feature;gene=pnp;inference=protein motif:Pfam:PF01138;locus_tag=Cj1253
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1185031	1185243	.	+	.	ID=id-Cj1253-5;Note=HMMPfam hit to PF03725%2C 3' exoribonuclease family%2Cdomain%2C score 6.1e-20;gbkey=misc_feature;gene=pnp;inference=protein motif:Pfam:PF03725;locus_tag=Cj1253
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1185316	1185492	.	+	.	ID=id-Cj1253-6;Note=HMMPfam hit to PF00013%2C KH domain%2C score 1.6e-13;gbkey=misc_feature;gene=pnp;inference=protein motif:Pfam:PF00013;locus_tag=Cj1253
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1185553	1185747	.	+	.	ID=id-Cj1253-7;Note=HMMPfam hit to PF00575%2C S1 RNA binding domain%2Cscore 5.7e-06;gbkey=misc_feature;gene=pnp;inference=protein motif:Pfam:PF00575;locus_tag=Cj1253
gi|15791399|ref|NC_002163.1|	EMBL	gene	1185750	1186232	.	+	.	ID=gene-Cj1254;Name=Cj1254;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1254
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1185750	1186232	.	+	0	ID=cds-CAL35369.1;Parent=gene-Cj1254;Dbxref=EnsemblGenomes-Gn:Cj1254,EnsemblGenomes-Tr:CAL35369,InterPro:IPR005122,InterPro:IPR026353,UniProtKB/TrEMBL:Q0P902,NCBI_GP:CAL35369.1;Name=CAL35369.1;Note=Original (2000) note: Cj1254%2C unknown%2C len: 160 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins and also to G/U mismatch-specific DNA glycosyl from other bacteria. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj1254;product=hypothetical protein Cj1254;protein_id=CAL35369.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1186290	1186499	.	+	.	ID=gene-Cj1255;Name=Cj1255;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1255
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1186290	1186499	.	+	0	ID=cds-CAL35370.1;Parent=gene-Cj1255;Dbxref=EnsemblGenomes-Gn:Cj1255,EnsemblGenomes-Tr:CAL35370,GOA:Q0P901,InterPro:IPR004370,InterPro:IPR014347,InterPro:IPR018191,UniProtKB/TrEMBL:Q0P901,NCBI_GP:CAL35370.1;Name=CAL35370.1;Note=Original (2000) note: Cj1255%2C possible isomerase%2Clen: 69 aa%3B highly similar to hypothetical protein from Erwinia chrysanthemi YKDK_ERWCH in KDGK (pectin degradation) 5'region (73 aa)%2C fasta scores%3B opt: 259 z-score: 374.4 E(): 1.5e-13%2C 61.2%25 identity in 67 aa overlap. Some similarity to plasmid-borne isomerases involed in toluene degradation e.g. XYLH_PSEPU 4-oxalocrotonate tautomerase (62 aa)%2C fasta scores%3B opt: 104 z-score: 164.7 E(): 0.071%2C 30.8%25 identity in 65 aa overlap%2C and to chromosomal hypothetical proteins e.g. YDCE_ECOLI (77 aa)%2C fasta scores%3B opt: 84 z-score: 136.1 E(): 2.8%2C 27.8%25 identity in 54 aa overlap. 64.2%25 identity to HP0924. Also similar to Cj0270 (37.7%25 identity in 69 aa overlap)%3B~Updated (2006) note: Pfam domain PF01361 Tautomerase enzyme identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score identified. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF01361;locus_tag=Cj1255;product=putative isomerase;protein_id=CAL35370.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1186293	1186481	.	+	.	ID=id-Cj1255;Note=HMMPfam hit to PF01361%2C Tautomerase enzyme%2C score 3.6e-27;gbkey=misc_feature;inference=protein motif:Pfam:PF01361;locus_tag=Cj1255
gi|15791399|ref|NC_002163.1|	EMBL	gene	1186496	1187158	.	-	.	ID=gene-Cj1256c;Name=Cj1256c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1256c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1186496	1187158	.	-	0	ID=cds-CAL35371.1;Parent=gene-Cj1256c;Dbxref=EnsemblGenomes-Gn:Cj1256c,EnsemblGenomes-Tr:CAL35371,InterPro:IPR025324,UniProtKB/TrEMBL:Q0P900,NCBI_GP:CAL35371.1;Name=CAL35371.1;Note=Original (2000) note: Cj1256c%2C possible membrane protein%2C len: 220 aa%3B no Hp match. Contains possible membrane spanning domain at N-terminus. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj1256c;product=putative membrane protein;protein_id=CAL35371.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1187096	1187149	.	-	.	ID=id-Cj1256c;Note=1 probable transmembrane helix predicted for Cj1256c by TMHMM2.0 at aa 4-21;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1256c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1187176	1188360	.	-	.	ID=gene-Cj1257c;Name=Cj1257c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1257c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1187176	1188360	.	-	0	ID=cds-CAL35372.1;Parent=gene-Cj1257c;Dbxref=EnsemblGenomes-Gn:Cj1257c,EnsemblGenomes-Tr:CAL35372,GOA:Q0P8Z9,InterPro:IPR001958,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0P8Z9,NCBI_GP:CAL35372.1;Name=CAL35372.1;Note=Original (2000) note: Cj1257c%2C possible efflux pump%2C len: 394 aa%3B similar to TR:CAA07482 (EMBL:AJ007367) Streptococcus pneumoniae multi-drug resistance efflux pump pmrA (399 aa)%2C fasta scores%3B opt: 854 z-score: 1007.9 E(): 0%2C 37.6%25 identity in 380 aa overlap. Also similar hypothetical transporters e.g. YCEE_ECOLI (408 aa)%2C fasta scores%3B opt: 830 z-score: 965.7 E(): 0%2C 35.8%25 identity in 383 aa overlap%2C and to other members of the major facilitator family%2C e.g. BMR1_BACSU multidrug resistance protein 1 (389 aa)%2C fasta scores%3B opt: 345 z-score: 405.2 E(): 2.8e-15%2C 24.2%25 identity in 389 aa overlap. No Hp match. Contains Pfam match to entry PF00083 sugar_tr%2CSugar (and other) transporters%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Also%2Ctwelve probable transmembrane helices predicted by TMHMM2.0. Further support given to putative function. Some characterisation within Escherichia coli. Literature search identified paper giving further clues to product function (PMID:16048946). Functional classification -Drug/analogue sensitivity%3B~PMID:1537791%2C PMID:11566977%2C PMID:16048946;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;product=putative efflux pump;protein_id=CAL35372.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1187212	1187271	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1187281	1187334	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1187395	1187463	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1187476	1187544	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1187578	1187646	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1187674	1187742	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1187800	1187868	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1187896	1187964	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1187983	1188051	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1188061	1188129	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1188163	1188231	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1188274	1188342	.	-	.	ID=id-Cj1257c;Note=12 probable transmembrane helices predicted for Cj1257c by TMHMM2.0 at aa 7-29%2C 44-66%2C 78-100%2C 104-126%2C133-155%2C 165-187%2C 207-229%2C 239-261%2C 273-295%2C 300-322%2C343-360 and 364-383;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1257c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1187287	1188330	.	-	.	ID=id-Cj1257c-2;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 9.6e-44;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj1257c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1188414	1188869	.	+	.	ID=gene-Cj1258;Name=Cj1258;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1258
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1188414	1188869	.	+	0	ID=cds-CAL35373.1;Parent=gene-Cj1258;Dbxref=EnsemblGenomes-Gn:Cj1258,EnsemblGenomes-Tr:CAL35373,GOA:Q0P8Z8,InterPro:IPR017867,InterPro:IPR023485,PDB:2GI4,UniProtKB/TrEMBL:Q0P8Z8,NCBI_GP:CAL35373.1;Name=CAL35373.1;Note=Original (2000) note: Cj1258%2C possible phosphotyrosine protein phosphatase%2C len: 151 aa%3B simlar to e.g. PPAL_YEAST low molecular weight phosphotyrosine protein phosphatase (EC 3.1.3.48) (161 aa)%2C fasta scores%3B opt: 279 z-score: 343.4 E(): 7.9e-12%2C 37.6%25 identity in 149 aa overlap%2C and YWLE_BACSU putative low molecular weight protein-tyrosine protein phosphatase (150 aa)%2Cfasta scores%3B opt: 191 z-score: 240.4 E(): 4.3e-06%2C 27.7%25 identity in 148 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01451 Low molecular weight phosphotyrosine protein identified within CDS. Further support given to pututive function. Possible changed to putative. Specific characterisation with acceptable identity score not carried out yet%2C so putative kept in product function. Functional classification -Protein translation and modification;gbkey=CDS;inference=protein motif:Pfam:PF01451;locus_tag=Cj1258;product=putative phosphotyrosine protein phosphatase;protein_id=CAL35373.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1188417	1188857	.	+	.	ID=id-Cj1258;Note=HMMPfam hit to PF01451%2C Low molecular weight phosphotyrosine protein%2C score 1.8e-28;gbkey=misc_feature;inference=protein motif:Pfam:PF01451;locus_tag=Cj1258
gi|15791399|ref|NC_002163.1|	EMBL	gene	1189121	1190395	.	+	.	ID=gene-Cj1259;Name=porA;gbkey=Gene;gene=porA;gene_biotype=protein_coding;locus_tag=Cj1259
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1189121	1190395	.	+	0	ID=cds-CAL35374.1;Parent=gene-Cj1259;Dbxref=EnsemblGenomes-Gn:Cj1259,EnsemblGenomes-Tr:CAL35374,GOA:P80672,InterPro:IPR008439,NCBI_GP:CAL35374.1;Name=CAL35374.1;Note=Original (2000) note: Cj1259%2C porA%2C major outer membrane protein (MOMP)%2C len: 424 aa%3B 94.6%25 identical to TR:AAC82317 (EMBL:U96452) C. jejuni major outer membrane porin (424 aa)%2C and 98.0%25 identity to MOMP_CAMJE major outer membrane protein (fragments) (399 aa). No hp match. Also simlar in part to Cj1021c (63 aa%2C 34.5%25 identity in 55 aa overlap)%3B~Updated (2006) note: Pfam domain PF05538 Campylobacter major outer membrane protein identified within CDS. Further support given to product function. Characterised within Campylobacter jejuni%2C so putative not added to product function. Functional classification -Membranes%2C lipoproteins and porins%3B~PMID:7543469%2C PMID:9163918;gbkey=CDS;gene=porA;inference=protein motif:Pfam:PF05538;locus_tag=Cj1259;product=major outer membrane protein;protein_id=CAL35374.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1189121	1190392	.	+	.	ID=id-Cj1259;Note=HMMPfam hit to PF05538%2C Campylobacter major outer membrane prote%2C score 0;gbkey=misc_feature;gene=porA;inference=protein motif:Pfam:PF05538;locus_tag=Cj1259
gi|15791399|ref|NC_002163.1|	EMBL	gene	1190510	1191631	.	-	.	ID=gene-Cj1260c;Name=dnaJ;gbkey=Gene;gene=dnaJ;gene_biotype=protein_coding;locus_tag=Cj1260c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1190510	1191631	.	-	0	ID=cds-CAL35375.1;Parent=gene-Cj1260c;Dbxref=EnsemblGenomes-Gn:Cj1260c,EnsemblGenomes-Tr:CAL35375,GOA:O85213,InterPro:IPR001305,InterPro:IPR001623,InterPro:IPR002939,InterPro:IPR008971,InterPro:IPR012724,InterPro:IPR018253,NCBI_GP:CAL35375.1;Name=CAL35375.1;Note=Original (2000) note: Cj1260c%2C dnaJ%2C probable chaperone%2C len: 373 aa%3B 99.2%25 identical to TR:O85213 (EMBL:AF052661) C. jejuni chaperone DNAJ (372 aa)%2C 94.3%25 identical to TR:O68797 (EMBL:AF053962) C. jejuni heat shock protein (379 aa)%2C and similar to e.g. DNAJ_ECOLI DNAJ protein (375 aa)%2C fasta scores%3B opt: 1032 z-score: 1059.8 E(): 0%2C 41.5%25 identity in 371 aa overlap. 49.9%25 identity to HP1332. Contains PS00637 CXXCXGXG dnaJ domain signature%2C PS00636 Nt-dnaJ domain signature%2C Pfam match to entry PF00226 DnaJ%2C DnaJ domain%2C and Pfam match to entry PF00684 DnaJ_CXXCXGXG%2C DnaJ central domain (4 repeats)%3B~Updated (2006) note: Characterised within Campylobacter jejuni%2C so putative not added to product function. Functional classification - Chaperones%2Cchaperonins%2C heat shock%3B~PMID:9673247%2C PMID:11569726;gbkey=CDS;gene=dnaJ;inference=protein motif:Prosite:PS00637;locus_tag=Cj1260c;product=chaperone DnaJ;protein_id=CAL35375.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1190591	1190953	.	-	.	ID=id-Cj1260c;Note=HMMPfam hit to PF01556%2C DnaJ C terminal region%2Cscore 2e-59;gbkey=misc_feature;gene=dnaJ;inference=protein motif:Pfam:PF01556;locus_tag=Cj1260c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1190990	1191229	.	-	.	ID=id-Cj1260c-2;Note=HMMPfam hit to PF00684%2C DnaJ central domain (4 repeats)%2C score 1.2e-22;gbkey=misc_feature;gene=dnaJ;inference=protein motif:Pfam:PF00684;locus_tag=Cj1260c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1191119	1191190	.	-	.	ID=id-Cj1260c-3;Note=PS00637 CXXCXGXG dnaJ domain signature;gbkey=misc_feature;gene=dnaJ;inference=protein motif:Prosite:PS00637;locus_tag=Cj1260c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1191425	1191622	.	-	.	ID=id-Cj1260c-4;Note=HMMPfam hit to PF00226%2C DnaJ domain%2C score 1.4e-39;gbkey=misc_feature;gene=dnaJ;inference=protein motif:Pfam:PF00226;locus_tag=Cj1260c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1191437	1191496	.	-	.	ID=id-Cj1260c-5;Note=PS00636 Nt-dnaJ domain signature;gbkey=misc_feature;gene=dnaJ;inference=protein motif:Prosite:PS00636;locus_tag=Cj1260c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1191788	1192459	.	+	.	ID=gene-Cj1261;Name=racR;gbkey=Gene;gene=racR;gene_biotype=protein_coding;locus_tag=Cj1261
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1191788	1192459	.	+	0	ID=cds-CAL35376.1;Parent=gene-Cj1261;Dbxref=EnsemblGenomes-Gn:Cj1261,EnsemblGenomes-Tr:CAL35376,GOA:Q0P8Z5,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,InterPro:IPR016032,UniProtKB/TrEMBL:Q0P8Z5,NCBI_GP:CAL35376.1;Name=CAL35376.1;Note=Original (2000) note: Cj1261%2C racR%2C two-component regulator%2C len: 223 aa%3B identical to TR:O68795 (EMBL:AF053960) C. jejuni response regulator protein (223 aa)%2C and similar to e.g. BAER_ECOLI transcriptional regulatory protein BAER (240 aa)%2C fasta scores%3B opt: 485 z-score: 583.5 E(): 3.3e-25%2C 37.4%25 identity in 219 aa overlap. 52.0%25 identity to HP0166. Also simlar to Cj1227c (50.7%25 identity in 223 aa overlap). Contains Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%2C and Pfam match to entry PF00486 trans_reg_C%2CTranscriptional regulatory protein%2C C terminal%3B~Updated (2006) note: Characterisation work carried out in Campylobacter jejuni%2C so putative not added to product function. Literature search identified paper linking product function to be involved in virulence associated factors (PMID:16392901). Functional classification - Signal transduction%3B~PMID:10322038%2C PMID:16392901;gbkey=CDS;gene=racR;inference=protein motif:Pfam:PF00486;locus_tag=Cj1261;product=two-component regulator;protein_id=CAL35376.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1191791	1192144	.	+	.	ID=id-Cj1261;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 1.5e-28;gbkey=misc_feature;gene=racR;inference=protein motif:Pfam:PF00072;locus_tag=Cj1261
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1192220	1192450	.	+	.	ID=id-Cj1261-2;Note=HMMPfam hit to PF00486%2C Transcriptional regulatory protein%2C C te%2C score 1.7e-18;gbkey=misc_feature;gene=racR;inference=protein motif:Pfam:PF00486;locus_tag=Cj1261
gi|15791399|ref|NC_002163.1|	EMBL	gene	1192456	1193691	.	+	.	ID=gene-Cj1262;Name=racS;gbkey=Gene;gene=racS;gene_biotype=protein_coding;locus_tag=Cj1262
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1192456	1193691	.	+	0	ID=cds-CAL35377.1;Parent=gene-Cj1262;Dbxref=EnsemblGenomes-Gn:Cj1262,EnsemblGenomes-Tr:CAL35377,GOA:Q0P8Z4,InterPro:IPR003594,InterPro:IPR003660,InterPro:IPR003661,InterPro:IPR005467,InterPro:IPR009082,UniProtKB/TrEMBL:Q0P8Z4,NCBI_GP:CAL35377.1;Name=CAL35377.1;Note=Original (2000) note: Cj1262%2C racS%2C probable two-component sensor (histidine kinase)%2C len: 411 aa%3B 99.5%25 identical to TR:O68796 (EMBL:AF053961) C. jejuni putative histidine protein kinase (fragment) (189 aa)%2C and similar to e.g. ENVZ_ECOLI osmolarity sensor protein ENVZ (450 aa)%2C fast scores%3B opt: 188 z-score: 217.1 E(): 8.5e-05%2C 24.4%25 identity in 242 aa overlap. N-term has 28.2%25 identity to HP0165%2C C-term has 37.9%25 identity to HP0164. Also similar to Cj1226c (31.3%25 identity in 412 aa overlap). Contains Pfam match to entry PF00512 signal%2CSignal carboxyl-terminal domain%2C and Pfam match to entry PF00149 STphosphatase%2C Ser/Thr protein phosphatases%3B~Updated (2006) note: Characterisation work carried out in Campylobacter jejuni%2C so putative not added to product function. Functional classification - Signal transduction%3B~PMID:10322038;gbkey=CDS;gene=racS;inference=protein motif:Pfam:PF00512;locus_tag=Cj1262;product=two-component sensor (histidine kinase);protein_id=CAL35377.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1192480	1192527	.	+	.	ID=id-Cj1262;Note=PS00038 Myc-type%2C 'helix-loop-helix' dimerization domain signature;gbkey=misc_feature;gene=racS;inference=protein motif:Prosite:PS00038;locus_tag=Cj1262
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1192486	1192545	.	+	.	ID=id-Cj1262-2;Note=2 probable transmembrane helices predicted for Cj1262 by TMHMM2.0 at aa 11-30 and 132-154;gbkey=misc_feature;gene=racS;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1262;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1192849	1192917	.	+	.	ID=id-Cj1262-2;Note=2 probable transmembrane helices predicted for Cj1262 by TMHMM2.0 at aa 11-30 and 132-154;gbkey=misc_feature;gene=racS;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1262;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1192858	1193064	.	+	.	ID=id-Cj1262-3;Note=HMMPfam hit to PF00672%2C HAMP domain%2C score 9.5e-06;gbkey=misc_feature;gene=racS;inference=protein motif:Pfam:PF00672;locus_tag=Cj1262
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1192900	1192947	.	+	.	ID=id-Cj1262-4;Note=PS00146 Beta-lactamase class-A active site;gbkey=misc_feature;gene=racS;inference=protein motif:Prosite:PS00146;locus_tag=Cj1262
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1193074	1193241	.	+	.	ID=id-Cj1262-5;Note=HMMPfam hit to PF00512%2C His Kinase A (phosphoacceptor) domain%2C score 2.9e-05;gbkey=misc_feature;gene=racS;inference=protein motif:Pfam:PF00512;locus_tag=Cj1262
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1193377	1193682	.	+	.	ID=id-Cj1262-6;Note=HMMPfam hit to PF02518%2C Histidine kinase-%2C DNA gyrase B-%2C and HSP90%2C score 3.8e-07;gbkey=misc_feature;gene=racS;inference=protein motif:Pfam:PF02518;locus_tag=Cj1262
gi|15791399|ref|NC_002163.1|	EMBL	gene	1193691	1194263	.	+	.	ID=gene-Cj1263;Name=recR;gbkey=Gene;gene=recR;gene_biotype=protein_coding;locus_tag=Cj1263
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1193691	1194263	.	+	0	ID=cds-CAL35378.1;Parent=gene-Cj1263;Dbxref=EnsemblGenomes-Gn:Cj1263,EnsemblGenomes-Tr:CAL35378,GOA:Q9PN35,InterPro:IPR000093,InterPro:IPR006171,InterPro:IPR015967,InterPro:IPR023627,InterPro:IPR023628,NCBI_GP:CAL35378.1;Name=CAL35378.1;Note=Original (2000) note: Cj1263%2C recR%2C probable recombination protein%2C len: 190 aa%3B similar to e.g. RECR_ECOLI recombination protein RECR (201 aa)%2C fasta scores%3B opt: 271 z-score: 328.9 E(): 5.1e-11%2C 33.2%25 identity in 193 aa overlap. 42.7%25 identity to HP0925. Contains S01300 RecR protein signature%3B~Updated (2006) note: Pfam domain PF02132 RecR protein was identified within CDS. Further support given to product function. Characterised in Escherichia coli and Bacillus subtilis with marginal identity score%2C so putative not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:2124672%2C PMID:1698765%2C PMID:8419343;gbkey=CDS;gene=recR;inference=protein motif:Pfam:PF02132;locus_tag=Cj1263;product=recombination protein;protein_id=CAL35378.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1193805	1193930	.	+	.	ID=id-Cj1263;Note=HMMPfam hit to PF02132%2C RecR protein%2C score 1.8e-13;gbkey=misc_feature;gene=recR;inference=protein motif:Pfam:PF02132;locus_tag=Cj1263
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1193862	1193924	.	+	.	ID=id-Cj1263-2;Note=PS01300 RecR protein signature;gbkey=misc_feature;gene=recR;inference=protein motif:Prosite:PS01300;locus_tag=Cj1263
gi|15791399|ref|NC_002163.1|	EMBL	gene	1194260	1194796	.	-	.	ID=gene-Cj1264c;Name=hydD;gbkey=Gene;gene=hydD;gene_biotype=protein_coding;locus_tag=Cj1264c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1194260	1194796	.	-	0	ID=cds-CAL35379.1;Parent=gene-Cj1264c;Dbxref=EnsemblGenomes-Gn:Cj1264c,EnsemblGenomes-Tr:CAL35379,GOA:Q0P8Z2,InterPro:IPR000671,InterPro:IPR023430,UniProtKB/TrEMBL:Q0P8Z2,NCBI_GP:CAL35379.1;Name=CAL35379.1;Note=Original (2000) note: Cj1264c%2C hydD%2C probable hydrogenase maturation protease%2C len: 178 aa%3B simlar to e.g. HYDD_WOLSU HYDD protein (159 aa)%2C fasta scores%3B opt: 443 z-score: 561.5 E(): 5.6e-24%2C 42.5%25 identity in 160 aa overlap%2C and HYBD_ECOLI hydrogenase 2 maturation protease (164 aa)%2C fasta scores%3B opt: 212 z-score: 275.6 E(): 4.7e-08%2C 28.1%25 identity in 128 aa overlap. 42.7%25 identity to HP0634%3B~Updated (2006) note: Pfam domain PF01750 Hydrogenase maturation protease identified within CDS. Further support given to product function. Some characterisation work within Wolinella succinogenes and Escherichia coli to different designations. Putative kept within product function. Functional classification -Energy metabolism - Respiration%3B~PMID:1587288%2C PMID:2180913%2C PMID:14726233;gbkey=CDS;gene=hydD;inference=protein motif:Pfam:PF01750;locus_tag=Cj1264c;product=putative hydrogenase maturation protease;protein_id=CAL35379.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1194344	1194739	.	-	.	ID=id-Cj1264c;Note=HMMPfam hit to PF01750%2C Hydrogenase maturation protease%2C score 2.7e-22;gbkey=misc_feature;gene=hydD;inference=protein motif:Pfam:PF01750;locus_tag=Cj1264c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1194793	1195485	.	-	.	ID=gene-Cj1265c;Name=hydC;gbkey=Gene;gene=hydC;gene_biotype=protein_coding;locus_tag=Cj1265c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1194793	1195485	.	-	0	ID=cds-CAL35380.1;Parent=gene-Cj1265c;Dbxref=EnsemblGenomes-Gn:Cj1265c,EnsemblGenomes-Tr:CAL35380,GOA:Q0P8Z1,InterPro:IPR000516,InterPro:IPR016174,UniProtKB/TrEMBL:Q0P8Z1,NCBI_GP:CAL35380.1;Name=CAL35380.1;Note=Original (2000) note: Cj1265c%2C hydC%2C probable Ni/Fe-hydrogenase B-type cytochrome subunit%2C len: 230 aa%3B similar to e.g. CYBH_WOLSU quinone-reactive Ni/Fe-hydrogenase B-type cytochrome subunit (230 aa)%2Cfasta scores%3B opt: 771 z-score: 968.2 E(): 0%2C 49.8%25 identity in 225 aa overlap%2C and CYBH_ECOLI probable Ni/Fe-hydrogenase B-type cytochrome subunit (235 aa)%2Cfasta scores%3B opt: 344 z-score: 437.4 E(): 4.6e-17%2C 25.5%25 identity in 231 aa overlap. 41.1%25 identity to HP0633. Contains PS00883 Nickel-dependent hydrogenases b-type cytochrome subunit signature 2%2C and fam match to entry PF01292 Ni_hydr_CYTB%2C Nickel-dependent hydrogenases b-type cytochrome subunit%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. Characterised within Wolinella succinogenes with acceptable identity score%2C so putative not added to product function. Functional classification - Energy metabolism - Respiration%3B~PMID:10525739%2C PMID:1587288%2C PMID:2180913;gbkey=CDS;gene=hydC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1265c;product=Ni/Fe-hydrogenase B-type cytochrome subunit;protein_id=CAL35380.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1194862	1194930	.	-	.	ID=id-Cj1265c;Note=4 probable transmembrane helices predicted for Cj1265c by TMHMM2.0 at aa 25-44%2C 64-86%2C 131-153 and 186-208;gbkey=misc_feature;gene=hydC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1265c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1195027	1195095	.	-	.	ID=id-Cj1265c;Note=4 probable transmembrane helices predicted for Cj1265c by TMHMM2.0 at aa 25-44%2C 64-86%2C 131-153 and 186-208;gbkey=misc_feature;gene=hydC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1265c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1195228	1195296	.	-	.	ID=id-Cj1265c;Note=4 probable transmembrane helices predicted for Cj1265c by TMHMM2.0 at aa 25-44%2C 64-86%2C 131-153 and 186-208;gbkey=misc_feature;gene=hydC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1265c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1195354	1195413	.	-	.	ID=id-Cj1265c;Note=4 probable transmembrane helices predicted for Cj1265c by TMHMM2.0 at aa 25-44%2C 64-86%2C 131-153 and 186-208;gbkey=misc_feature;gene=hydC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1265c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1194823	1195449	.	-	.	ID=id-Cj1265c-2;Note=HMMPfam hit to PF01292%2C Cytochrome b561 family%2Cscore 2.6e-37;gbkey=misc_feature;gene=hydC;inference=protein motif:Pfam:PF01292;locus_tag=Cj1265c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1194889	1194942	.	-	.	ID=id-Cj1265c-3;Note=PS00883 Nickel-dependent hydrogenases b-type cytochrome subunit signature 2;gbkey=misc_feature;gene=hydC;inference=protein motif:Prosite:PS00883;locus_tag=Cj1265c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1195258	1195290	.	-	.	ID=id-Cj1265c-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=hydC;inference=protein motif:Prosite:PS00013;locus_tag=Cj1265c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1195496	1197211	.	-	.	ID=gene-Cj1266c;Name=hydB;gbkey=Gene;gene=hydB;gene_biotype=protein_coding;locus_tag=Cj1266c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1195496	1197211	.	-	0	ID=cds-CAL35381.1;Parent=gene-Cj1266c;Dbxref=EnsemblGenomes-Gn:Cj1266c,EnsemblGenomes-Tr:CAL35381,GOA:Q0P8Z0,InterPro:IPR001501,InterPro:IPR018194,InterPro:IPR029014,UniProtKB/TrEMBL:Q0P8Z0,NCBI_GP:CAL35381.1;Name=CAL35381.1;Note=Original (2000) note: Cj1266c%2C hydB%2C probable Ni/Fe-hydrogenase large subunit%2C len: 571 aa%3B similar to e.g. MBHL_WOLSU quinone-reactive Ni/Fe-hydrogenase large chain (575 aa)%2C fasta scores%3B opt: 2619 z-score: 3068.8 E(): 0%2C 65.3%25 identity in 567 aa overlap%2C and MBHM_ECOLI hydrogenase-2 large chain (567 aa)%2C fasta scores%3B opt: 1355 z-score: 1587.5 E(): 0%2C 42.1%25 identity in 589 aa overlap. 64.7%25 identity to HP0632. Contains PS00507 and PS00508 Nickel-dependent hydrogenases large subunit signatures 1 and 2%2C and Pfam match to entry PF00374 NiFeSe_Hases%2C Nickel-dependent hydrogenases%3B~Updated (2006) note: Characterised within Wolinella succinogenes%2C so putative not added to product function. Functional classification - Energy metabolism -Respiration%3B~PMID:10525739%2C PMID:1587288%2C PMID:2180913;gbkey=CDS;gene=hydB;inference=protein motif:Prosite:PS00508;locus_tag=Cj1266c;product=Ni/Fe-hydrogenase large subunit;protein_id=CAL35381.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1195553	1197094	.	-	.	ID=id-Cj1266c;Note=HMMPfam hit to PF00374%2C Nickel-dependent hydrogenase%2C score 5.7e-256;gbkey=misc_feature;gene=hydB;inference=protein motif:Pfam:PF00374;locus_tag=Cj1266c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1195553	1195582	.	-	.	ID=id-Cj1266c-2;Note=PS00508 Nickel-dependent hydrogenases large subunit signature 2;gbkey=misc_feature;gene=hydB;inference=protein motif:Prosite:PS00508;locus_tag=Cj1266c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1197017	1197094	.	-	.	ID=id-Cj1266c-3;Note=PS00507 Nickel-dependent hydrogenases large subunit signature 1;gbkey=misc_feature;gene=hydB;inference=protein motif:Prosite:PS00507;locus_tag=Cj1266c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1197214	1198353	.	-	.	ID=gene-Cj1267c;Name=hydA;gbkey=Gene;gene=hydA;gene_biotype=protein_coding;locus_tag=Cj1267c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1197214	1198353	.	-	0	ID=cds-CAL35382.1;Parent=gene-Cj1267c;Dbxref=EnsemblGenomes-Gn:Cj1267c,EnsemblGenomes-Tr:CAL35382,GOA:Q0P8Y9,InterPro:IPR001821,InterPro:IPR006137,InterPro:IPR006311,InterPro:IPR027394,UniProtKB/TrEMBL:Q0P8Y9,NCBI_GP:CAL35382.1;Name=CAL35382.1;Note=Original (2000) note: Cj1267c%2C hydA%2C probable Ni/Fe-hydrogenase small subunit%2C len: 379 aa%3B similar to e.g. MBHS_WOLSU quinone-reactive Ni/Fe-hydrogenase small chain precursor (354 aa)%2C fasta scores%3B opt: 1968 z-score: 2288.8 E(): 0%2C 78.1%25 identity in 351 aa overlap%2C and MBHS_ECOLI hydrogenase-1 small chain precursor (372 aa)%2Cfasta scores%3B opt: 1058 z-score: 1232.4 E(): 0%2C 44.0%25 identity in 361 aa overlap. 68.2%25 identity to HP0631. Also similar to Cj1399c (50.8%25 identity in 329 aa overlap)%3B~Updated (2006) note: Pfam domain PF01058 NADH ubiquinone oxidoreductase%2C 20 Kd subunit identified within CDS. Further support given to product function. Characterised within Wolinella succinogenes%2C so putative not added to product function. Functional classification -Energy metabolism - Respiration%3B~PMID:10525739%2C PMID:1587288%2C PMID:2180913;gbkey=CDS;gene=hydA;inference=protein motif:Pfam:PF01058;locus_tag=Cj1267c;product=Ni/Fe-hydrogenase small chain;protein_id=CAL35382.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1197664	1197984	.	-	.	ID=id-Cj1267c;Note=HMMPfam hit to PF01058%2C NADH ubiquinone oxidoreductase%2C 20 Kd sub%2C score 7.5e-05;gbkey=misc_feature;gene=hydA;inference=protein motif:Pfam:PF01058;locus_tag=Cj1267c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1197970	1198014	.	-	.	ID=id-Cj1267c-2;Note=PS00024 Hemopexin domain signature;gbkey=misc_feature;gene=hydA;inference=protein motif:Prosite:PS00024;locus_tag=Cj1267c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1198474	1200315	.	-	.	ID=gene-Cj1268c;Name=Cj1268c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1268c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1198474	1200315	.	-	0	ID=cds-CAL35383.1;Parent=gene-Cj1268c;Dbxref=EnsemblGenomes-Gn:Cj1268c,EnsemblGenomes-Tr:CAL35383,GOA:Q9PN30,InterPro:IPR006076,InterPro:IPR008471,InterPro:IPR017610,InterPro:IPR023032,InterPro:IPR029063,NCBI_GP:CAL35383.1;Name=CAL35383.1;Note=Original (2000) note: Cj1268c%2C unknown%2C len: 613 aa%3B similar to hypothetical proteins e.g. TR:P77182 (EMBL:AE000321) E. coli b2324 (688 aa)%2C fasta scores%3B opt: 555 z-score: 641.1 E(): 2.1e-28%2C 31.3%25 identity in 665 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF01266 FAD dependent oxidoreductase and PF05430 Protein of unknown function (DUF752) were identified within CDS. Product function modified to more specific family member based on motif matches. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF05430;locus_tag=Cj1268c;product=putative FAD dependent oxidoreductase;protein_id=CAL35383.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1198567	1199574	.	-	.	ID=id-Cj1268c;Note=HMMPfam hit to PF01266%2C FAD dependent oxidoreductase%2C score 2e-31;gbkey=misc_feature;inference=protein motif:Pfam:PF01266;locus_tag=Cj1268c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1199641	1200309	.	-	.	ID=id-Cj1268c-2;Note=HMMPfam hit to PF05430%2C Protein of unknown function (DUF752)%2C score 4.9e-111;gbkey=misc_feature;inference=protein motif:Pfam:PF05430;locus_tag=Cj1268c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1200312	1202291	.	-	.	ID=gene-Cj1269c;Name=amiA;gbkey=Gene;gene=amiA;gene_biotype=protein_coding;locus_tag=Cj1269c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1200312	1202291	.	-	0	ID=cds-CAL35384.1;Parent=gene-Cj1269c;Dbxref=EnsemblGenomes-Gn:Cj1269c,EnsemblGenomes-Tr:CAL35384,GOA:Q0P8Y7,InterPro:IPR002508,InterPro:IPR021731,UniProtKB/TrEMBL:Q0P8Y7,NCBI_GP:CAL35384.1;Name=CAL35384.1;Note=Original (2000) note: Cj1269c%2C amiA%2C probable N-acetylmuramoyl-L-alanine amidase%2C len: 659 aa%3B similar in N-terminus to many e.g. AMIA_ECOLI probable N-acetylmuramoyl-L-alanine amidase AMIA precursor (EC 3.5.1.28) (289 aa)%2C fasta scores%3B opt: 393 z-score: 409.5 E(): 1.6e-15%2C 32.2%25 identity in 264 aa overlap%2C and CWLB_BACSU N-acetylmuramoyl-L-alanine amidase CWLB precursor (496 aa)%2C fasta scores%3B opt: 250 z-score: 260.4 E(): 3.3e-07%2C 24.9%25 identity in 365 aa overlap. Similar in N-term to HP0772 (51.8%25 identity in 253 aa overlap). C-term approx 400 aa appear to be unique. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF01520 N-acetylmuramoyl-L-alanine amidase identified within CDS. Further support given to product function. Characterised in Escherchia coli with marginal identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:12787347%2C PMID:6137479%2C PMID:11454209%2CPMID:12787347;gbkey=CDS;gene=amiA;inference=protein motif:Pfam:PF01520;locus_tag=Cj1269c;product=N-acetylmuramoyl-L-alanine amidase;protein_id=CAL35384.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1200324	1200803	.	-	.	ID=id-Cj1269c;Note=HMMPfam hit to PF01520%2C N-acetylmuramoyl-L-alanine amidase%2C score 2.7e-47;gbkey=misc_feature;gene=amiA;inference=protein motif:Pfam:PF01520;locus_tag=Cj1269c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1202291	1203382	.	-	.	ID=gene-Cj1270c;Name=Cj1270c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1270c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1202291	1203382	.	-	0	ID=cds-CAL35385.1;Parent=gene-Cj1270c;Dbxref=EnsemblGenomes-Gn:Cj1270c,EnsemblGenomes-Tr:CAL35385,GOA:Q0P8Y6,InterPro:IPR004136,InterPro:IPR013785,UniProtKB/TrEMBL:Q0P8Y6,NCBI_GP:CAL35385.1;Name=CAL35385.1;Note=Original (2000) note: Cj1270c%2C unknown%2C len: 363 aa%3B similar to hypothetical proteins e.g. TR:O66549 (EMBL:AE000676) Aquifex aeolicus AQ_159 (182 aa)%2C fasta scores%3B opt: 550 z-score: 647.2 E(): 9.5e-29%2C 52.2%25 identity in 161 aa overlap. 61.1%25 identity to HP0773%3B~Updated (2006) note: Pfam domain PF03060 2-nitropropane dioxygenase identified within CDS. Product function modified to more specific family member based on motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF03060;locus_tag=Cj1270c;product=putative 2-nitropropane dioxygenase%2Coxidoreductase protein;protein_id=CAL35385.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1202297	1203373	.	-	.	ID=id-Cj1270c;Note=HMMPfam hit to PF03060%2C 2-nitropropane dioxygenase%2Cscore 5.8e-95;gbkey=misc_feature;inference=protein motif:Pfam:PF03060;locus_tag=Cj1270c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1203379	1204584	.	-	.	ID=gene-Cj1271c;Name=tyrS;gbkey=Gene;gene=tyrS;gene_biotype=protein_coding;locus_tag=Cj1271c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1203379	1204584	.	-	0	ID=cds-CAL35386.1;Parent=gene-Cj1271c;Dbxref=EnsemblGenomes-Gn:Cj1271c,EnsemblGenomes-Tr:CAL35386,GOA:Q9PN27,InterPro:IPR001412,InterPro:IPR002305,InterPro:IPR002307,InterPro:IPR002942,InterPro:IPR014729,InterPro:IPR024088,InterPro:IPR024108,NCBI_GP:CAL35386.1;Name=CAL35386.1;Note=Original (2000) note: Cj1271c%2C tyrS%2C probable tyrosyl-tRNA synthetase%2C len: 401 aa%3B highly similar to many e.g. SYY2_BACSU tyrosyl-tRNA synthetase 2 (EC 6.1.1.1) (412 aa)%2C fasta scores%3B opt: 1205 z-score: 1362.2 E(): 0%2C 48.3%25 identity in 400 aa overlap. 56.5%25 identity to HP0774. Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature%2C and Pfam match to entry PF00579 tRNA-synt_1b%2C tRNA synthetases class I (Trp and Tyr)%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Thus%2C putative not added to product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:1806041;gbkey=CDS;gene=tyrS;inference=protein motif:Prosite:PS00178;locus_tag=Cj1271c;product=tyrosyl-tRNA synthetase;protein_id=CAL35386.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1203427	1203570	.	-	.	ID=id-Cj1271c;Note=HMMPfam hit to PF01479%2C S4 domain%2C score 0.0012;gbkey=misc_feature;gene=tyrS;inference=protein motif:Pfam:PF01479;locus_tag=Cj1271c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1203619	1204491	.	-	.	ID=id-Cj1271c-2;Note=HMMPfam hit to PF00579%2C tRNA synthetases class I (W and Y)%2C score 8.6e-97;gbkey=misc_feature;gene=tyrS;inference=protein motif:Pfam:PF00579;locus_tag=Cj1271c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1204420	1204452	.	-	.	ID=id-Cj1271c-3;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=tyrS;inference=protein motif:Prosite:PS00178;locus_tag=Cj1271c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1204596	1206791	.	-	.	ID=gene-Cj1272c;Name=spoT;gbkey=Gene;gene=spoT;gene_biotype=protein_coding;locus_tag=Cj1272c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1204596	1206791	.	-	0	ID=cds-CAL35387.1;Parent=gene-Cj1272c;Dbxref=EnsemblGenomes-Gn:Cj1272c,EnsemblGenomes-Tr:CAL35387,GOA:Q0P8Y4,InterPro:IPR002912,InterPro:IPR003607,InterPro:IPR004095,InterPro:IPR004811,InterPro:IPR007685,InterPro:IPR012675,InterPro:IPR012676,UniProtKB/TrEMBL:Q0P8Y4,NCBI_GP:CAL35387.1;Name=CAL35387.1;Note=Original (2000) note: Cj1272c%2C spoT%2C probable guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase%2Clen: 731 aa%3B similar to e.g. SPOT_ECOLI guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) (702 aa)%2C fasta scores%3B opt: 1208 z-score: 1408.2 E(): 0%2C 32.8%25 identity in 677 aa overlap. 40.7%25 identity to HP0775. Also similar to e.g. RELA_ECOLI GTP pyrophosphokinase (744 aa)%2C fasta scores%3B opt: 855 z-score: 995.9 E(): 0%2C 28.3%25 identity in 668 aa overlap. There appears to be no distinct relA homolog in Cj or Hp%3B~Updated (2006) note: Pfam domains PF01842 ACT domain%2C PF02824 TGS domain%2C PF04607 Region found in RelA / SpoT proteins and PF01966 HD domain were all identified within CDS. Further support given to product function. Still not specifically characterised with acceptable identity score%2C so putative kept within product function. Literature search identified paper giving further clues to product function. Functional classification - Broad regulatory functions%3B~PMID:15773975%2C PMID:2549050;gbkey=CDS;gene=spoT;inference=protein motif:Pfam:PF04607;locus_tag=Cj1272c;product=putative guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase;protein_id=CAL35387.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1204620	1204844	.	-	.	ID=id-Cj1272c;Note=HMMPfam hit to PF01842%2C ACT domain%2C score 1.3e-06;gbkey=misc_feature;gene=spoT;inference=protein motif:Pfam:PF01842;locus_tag=Cj1272c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1205364	1205555	.	-	.	ID=id-Cj1272c-2;Note=HMMPfam hit to PF02824%2C TGS domain%2C score 6.4e-20;gbkey=misc_feature;gene=spoT;inference=protein motif:Pfam:PF02824;locus_tag=Cj1272c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1205676	1206005	.	-	.	ID=id-Cj1272c-3;Note=HMMPfam hit to PF04607%2C Region found in RelA / SpoT proteins%2C score 2.4e-45;gbkey=misc_feature;gene=spoT;inference=protein motif:Pfam:PF04607;locus_tag=Cj1272c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1206285	1206608	.	-	.	ID=id-Cj1272c-4;Note=HMMPfam hit to PF01966%2C HD domain%2C score 8.1e-07;gbkey=misc_feature;gene=spoT;inference=protein motif:Pfam:PF01966;locus_tag=Cj1272c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1206636	1206653	.	-	.	ID=id-Cj1272c-5;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=spoT;inference=protein motif:Prosite:PS00190;locus_tag=Cj1272c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1206775	1206999	.	-	.	ID=gene-Cj1273c;Name=rpoZ;gbkey=Gene;gene=rpoZ;gene_biotype=protein_coding;locus_tag=Cj1273c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1206775	1206999	.	-	0	ID=cds-CAL35388.1;Parent=gene-Cj1273c;Dbxref=EnsemblGenomes-Gn:Cj1273c,EnsemblGenomes-Tr:CAL35388,GOA:Q9PN25,InterPro:IPR003716,InterPro:IPR006110,InterPro:IPR012293,NCBI_GP:CAL35388.1;Name=CAL35388.1;Note=Original (2000) note: Cj1273c%2C rpoZ%2C probable DNA-directed RNA polymerase omega chain%2C len: 74 aa%3B similar to e.g. RPOZ_ECOLI DNA-directed RNA polymerase omega chain (EC 2.7.7.6) (91 aa)%2C fasta scores%3B opt: 113 z-score: 170.3 E(): 0.036%2C 46.3%25 identity in 54 aa overlap. 46.5%25 identity to HP0776%3B~Updated (2006) note: Pfam domain PF01192 RNA polymerase Rpb6 identified within CDS. Further support given to product function. Characterised within Escherichia coli%2C with acceptable identity score%2C however%2Csequence alignment was only partial. Thus%2C putative kept within product function. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:2549050%2C PMID:3549461%2C PMID:12426327;gbkey=CDS;gene=rpoZ;inference=protein motif:Pfam:PF01192;locus_tag=Cj1273c;product=putative DNA-directed RNA polymerase omega chain;protein_id=CAL35388.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1206790	1206954	.	-	.	ID=id-Cj1273c;Note=HMMPfam hit to PF01192%2C RNA polymerase Rpb6%2C score 2.8e-19;gbkey=misc_feature;gene=rpoZ;inference=protein motif:Pfam:PF01192;locus_tag=Cj1273c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1207010	1207729	.	-	.	ID=gene-Cj1274c;Name=pyrH;gbkey=Gene;gene=pyrH;gene_biotype=protein_coding;locus_tag=Cj1274c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1207010	1207729	.	-	0	ID=cds-CAL35389.1;Parent=gene-Cj1274c;Dbxref=EnsemblGenomes-Gn:Cj1274c,EnsemblGenomes-Tr:CAL35389,GOA:Q9PN24,InterPro:IPR001048,InterPro:IPR011817,InterPro:IPR015963,NCBI_GP:CAL35389.1;Name=CAL35389.1;Note=Original (2000) note: Cj1274c%2C pyrH%2C probable uridylate kinase%2C len: 239 aa%3B similar to many e.g. PYRH_ECOLI uridylate kinase (EC 2.7.4.-) (240 aa)%2C fasta scores%3B opt: 730 z-score: 848.1 E(): 0%2C 49.8%25 identity in 225 aa overlap. 70.0%25 identity to HP0777. Contains Pfam match to entry PF00696 aakinase%2C Aspartate kinases%2CGlutamate kinases and Gamma glutamate phospho-reductases%3B~Updated (2006) note: Characterised within Escherichia coli%2C with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Miscellaneous nucleoside/nucleotide reactions%3B~PMID:9457846%2C PMID:7711027;gbkey=CDS;gene=pyrH;inference=protein motif:Pfam:PF00696;locus_tag=Cj1274c;product=uridylate kinase;protein_id=CAL35389.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1207085	1207717	.	-	.	ID=id-Cj1274c;Note=HMMPfam hit to PF00696%2C Amino acid kinase family%2Cscore 7.1e-54;gbkey=misc_feature;gene=pyrH;inference=protein motif:Pfam:PF00696;locus_tag=Cj1274c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1207781	1208974	.	-	.	ID=gene-Cj1275c;Name=Cj1275c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1275c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1207781	1208974	.	-	0	ID=cds-CAL35390.1;Parent=gene-Cj1275c;Dbxref=EnsemblGenomes-Gn:Cj1275c,EnsemblGenomes-Tr:CAL35390,InterPro:IPR011055,InterPro:IPR016047,UniProtKB/TrEMBL:Q0P8Y1,NCBI_GP:CAL35390.1;Name=CAL35390.1;Note=Original (2000) note: Cj1275c%2C probable periplasmic protein%2C len: 397 aa%3B weak similarity to hypothetical proteins e.g. YIBP_ECOLI (419 aa)%2C fasta scores%3B opt: 203 z-score: 198.7 E(): 0.0009%2C 21.5%25 identity in 396 aa overlap. 36.4%25 identity to HP0750. Contains probable N-terminal signal sequence and coiled-coil regions between approx. aa 30-100 and 165-230%3B~Updated (2006) note: Pfam domain PF01551 Peptidase family M23 identified within CDS. Also%2C one probable transmembrane helix predicted by TMHMM2.0. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification - Degradation of macromolecules - Proteins%2Cpeptides and glycopeptides. Functional classification -Degradation of macromolecules - Proteins%2C peptides and glycopeptides;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1275c;product=putative peptidase M23 family protein;protein_id=CAL35390.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1207805	1208080	.	-	.	ID=id-Cj1275c;Note=HMMPfam hit to PF01551%2C Peptidase family M23%2C score 1e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF01551;locus_tag=Cj1275c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1208903	1208962	.	-	.	ID=id-Cj1275c-2;Note=1 probable transmembrane helix predicted for Cj1275c by TMHMM2.0 at aa 5-24;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1275c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1208971	1209777	.	-	.	ID=gene-Cj1276c;Name=Cj1276c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1276c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1208971	1209777	.	-	0	ID=cds-CAL35391.1;Parent=gene-Cj1276c;Dbxref=EnsemblGenomes-Gn:Cj1276c,EnsemblGenomes-Tr:CAL35391,GOA:Q0P8Y0,InterPro:IPR003838,UniProtKB/TrEMBL:Q0P8Y0,NCBI_GP:CAL35391.1;Name=CAL35391.1;Note=Original (2000) note: Cj1276c%2C probable integral membrane protein%2C len: 268 aa%3B 32.1%25 identity to HP0749%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1276c;product=putative integral membrane protein;protein_id=CAL35391.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1208989	1209057	.	-	.	ID=id-Cj1276c;Note=4 probable transmembrane helices predicted for Cj1276c by TMHMM2.0 at aa 7-29%2C 143-165%2C 199-221 and 241-263;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1276c;part=1/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1209115	1209183	.	-	.	ID=id-Cj1276c;Note=4 probable transmembrane helices predicted for Cj1276c by TMHMM2.0 at aa 7-29%2C 143-165%2C 199-221 and 241-263;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1276c;part=2/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1209283	1209351	.	-	.	ID=id-Cj1276c;Note=4 probable transmembrane helices predicted for Cj1276c by TMHMM2.0 at aa 7-29%2C 143-165%2C 199-221 and 241-263;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1276c;part=3/4
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1209691	1209759	.	-	.	ID=id-Cj1276c;Note=4 probable transmembrane helices predicted for Cj1276c by TMHMM2.0 at aa 7-29%2C 143-165%2C 199-221 and 241-263;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1276c;part=4/4
gi|15791399|ref|NC_002163.1|	EMBL	gene	1209764	1210429	.	-	.	ID=gene-Cj1277c;Name=Cj1277c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1277c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1209764	1210429	.	-	0	ID=cds-CAL35392.1;Parent=gene-Cj1277c;Dbxref=EnsemblGenomes-Gn:Cj1277c,EnsemblGenomes-Tr:CAL35392,GOA:Q0P8X9,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P8X9,NCBI_GP:CAL35392.1;Name=CAL35392.1;Note=Original (2000) note: Cj1277c%2C probable ABC transporter ATP-binding protein%2C len: 221 aa%3B similar to many e.g. YCFV_ECOLI hypothetical ABC transporter ATP-binding protein (233 aa)%2C fast scores%3B opt: 464 z-score: 566.5 E(): 2.9e-24%2C 38.2%25 identity in 220 aa overlap%2C and FTSE_ECOLI cell division ATP-binding protein FTSE (222 aa)%2C fasta scores%3B opt: 455 z-score: 556.0 E(): 1.1e-23%2C 38.5%25 identity in 213 aa overlap. 54.8%25 identity to HP0748. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Similar to more than one characterised strain/genus. Literature search added for further information. Putative kept within product function. Functional classification - Transport/binding proteins - Other%3B~PMID:11844772%2C PMID:10783239%2C PMID:12823819;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj1277c;product=putative ABC transporter ATP-binding protein;protein_id=CAL35392.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1209785	1210345	.	-	.	ID=id-Cj1277c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 2.7e-54;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj1277c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1209971	1210015	.	-	.	ID=id-Cj1277c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj1277c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1210301	1210324	.	-	.	ID=id-Cj1277c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1277c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1210499	1211677	.	-	.	ID=gene-Cj1278c;Name=trmB;gbkey=Gene;gene=trmB;gene_biotype=protein_coding;locus_tag=Cj1278c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1210499	1211677	.	-	0	ID=cds-CAL35393.1;Parent=gene-Cj1278c;Dbxref=EnsemblGenomes-Gn:Cj1278c,EnsemblGenomes-Tr:CAL35393,GOA:Q9PN20,InterPro:IPR003358,InterPro:IPR029063,NCBI_GP:CAL35393.1;Name=CAL35393.1;Note=Original (2000) note: Cj1278c%2C unknown%2C len: 392 aa%3B similar to hypothetical proteins e.g. Y347_MYCGE Mycoplasma genitalium MG347 (210 aa)%2C fast scores%3B opt: 307 z-score: 364.6 E(): 5.2e-13%2C 36.4%25 identity in 154 aa overlap. 33.8%25 identity to HP0747%3B~Updated (2006) note: Pfam domain PF02390 Putative methyltransferase identified within CDS. Characterised in Bacillus subtilis with marginal identity score. Product function modified to more specific family member. Putative kept within product function. Functional classification -RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:16600901;gbkey=CDS;gene=trmB;inference=protein motif:Pfam:PF02390;locus_tag=Cj1278c;product=putative tRNA (guanine-N(7)-)-methyltransferase;protein_id=CAL35393.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1210829	1211401	.	-	.	ID=id-Cj1278c;Note=HMMPfam hit to PF02390%2C Putative methyltransferase%2Cscore 6.1e-37;gbkey=misc_feature;gene=trmB;inference=protein motif:Pfam:PF02390;locus_tag=Cj1278c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1211677	1212912	.	-	.	ID=gene-Cj1279c;Name=Cj1279c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1279c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1211677	1212912	.	-	0	ID=cds-CAL35394.1;Parent=gene-Cj1279c;Dbxref=EnsemblGenomes-Gn:Cj1279c,EnsemblGenomes-Tr:CAL35394,InterPro:IPR003961,InterPro:IPR013783,UniProtKB/TrEMBL:Q0P8X7,NCBI_GP:CAL35394.1;Name=CAL35394.1;Note=Original (2000) note: Cj1279c%2C probable fibronectin domain-containing lipoprotein%2C len: 411 aa%3B 31.1%25 identity to HP0746. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Also contains 4x Pfam match to entry PF00041 fn3%2C Fibronectin type III domain%3B~Updated (2006) note: Specific characterisation with acceptable identity score has not been carried out yet%2C so putative kept within product function. Functional classification - Pathogenicity;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1279c;product=putative fibronectin domain-containing lipoprotein;protein_id=CAL35394.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1211701	1211937	.	-	.	ID=id-Cj1279c;Note=HMMPfam hit to PF00041%2C Fibronectin type III domain%2C score 0.0033;gbkey=misc_feature;inference=protein motif:Pfam:PF00041;locus_tag=Cj1279c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1211980	1212219	.	-	.	ID=id-Cj1279c-2;Note=HMMPfam hit to PF00041%2C Fibronectin type III domain%2C score 0.0079;gbkey=misc_feature;inference=protein motif:Pfam:PF00041;locus_tag=Cj1279c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1212250	1212507	.	-	.	ID=id-Cj1279c-3;Note=HMMPfam hit to PF00041%2C Fibronectin type III domain%2C score 0.0037;gbkey=misc_feature;inference=protein motif:Pfam:PF00041;locus_tag=Cj1279c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1212547	1212792	.	-	.	ID=id-Cj1279c-4;Note=HMMPfam hit to PF00041%2C Fibronectin type III domain%2C score 0.0015;gbkey=misc_feature;inference=protein motif:Pfam:PF00041;locus_tag=Cj1279c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1212850	1212882	.	-	.	ID=id-Cj1279c-5;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1279c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1212857	1213825	.	-	.	ID=gene-Cj1280c;Name=Cj1280c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1280c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1212857	1213825	.	-	0	ID=cds-CAL35395.1;Parent=gene-Cj1280c;Dbxref=EnsemblGenomes-Gn:Cj1280c,EnsemblGenomes-Tr:CAL35395,GOA:Q0P8X6,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR006224,InterPro:IPR006225,InterPro:IPR020103,UniProtKB/TrEMBL:Q0P8X6,NCBI_GP:CAL35395.1;Name=CAL35395.1;Note=Original (2000) note: Cj1280c%2C probable ribosomal pseudouridine synthase%2C len: 322 aa%3B similar to e.g. RLUD_ZYMMO ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) (317 aa)%2C fasta scores%3B opt: 508 z-score: 590.1 E(): 1.4e-25%2C 33.5%25 identity in 310 aa overlap. 51.4%25 identity to HP0745. Also similar to Cj0708 (26.9%25 identity in 223 aa overlap)%2C and Cj0022c (31.7%25 identity in 246 aa overlap). Contains PS01129 Hypothetical yabO/yceC/sfhB family signature%2C and Pfam match to entry PF00849 YABO%2C Hypothetical yabO/yceC/sfhB family%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Functional classification - Ribosomal protein synthesis and modification;gbkey=CDS;inference=protein motif:Prosite:PS01129;locus_tag=Cj1280c;product=putative ribosomal pseudouridine synthase;protein_id=CAL35395.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1213097	1213573	.	-	.	ID=id-Cj1280c;Note=HMMPfam hit to PF00849%2C RNA pseudouridylate synthase%2C score 4e-45;gbkey=misc_feature;inference=protein motif:Pfam:PF00849;locus_tag=Cj1280c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1213391	1213435	.	-	.	ID=id-Cj1280c-2;Note=PS01129 Rlu family of pseudouridine synthase signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01129;locus_tag=Cj1280c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1213658	1213798	.	-	.	ID=id-Cj1280c-3;Note=HMMPfam hit to PF01479%2C S4 domain%2C score 4.3e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF01479;locus_tag=Cj1280c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1213903	1215003	.	+	.	ID=gene-Cj1282;Name=mrdB;gbkey=Gene;gene=mrdB;gene_biotype=protein_coding;locus_tag=Cj1282
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1213903	1215003	.	+	0	ID=cds-CAL35396.1;Parent=gene-Cj1282;Dbxref=EnsemblGenomes-Gn:Cj1282,EnsemblGenomes-Tr:CAL35396,GOA:Q0P8X5,InterPro:IPR001182,UniProtKB/TrEMBL:Q0P8X5,NCBI_GP:CAL35396.1;Name=CAL35396.1;Note=Original (2000) note: Cj1282%2C mrdB%2C probable RodA protein homolog%2C len: 366 aa%3B similar to e.g. RODA_ECOLI rod shape-determining protein RODA (370 aa)%2C fasta scores%3B opt: 699 z-score: 837.9 E(): 0%2C 35.8%25 identity in 355 aa overlap%2C and SP5E_BACSU stage V sporulation protein E (366 aa)%2C fasta scores%3B opt: 526 z-score: 632.0 E(): 6.6e-28%2C30.3%25 identity in 337 aa overlap. 52.8%25 identity to HP0743. Contains Pfam match to entry PF01098 FTSW_RODA_SPOVE%2C Cell cycle protein%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Homolog designation kept within product function. Functional classification -Murein sacculus and peptidoglycan%3B~PMID:6243629;gbkey=CDS;gene=mrdB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1282;product=RodA protein homolog;protein_id=CAL35396.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1213906	1214979	.	+	.	ID=id-Cj1282;Note=HMMPfam hit to PF01098%2C Cell cycle protein%2C score 1.9e-95;gbkey=misc_feature;gene=mrdB;inference=protein motif:Pfam:PF01098;locus_tag=Cj1282
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1213945	1214013	.	+	.	ID=id-Cj1282-2;Note=9 probable transmembrane helices predicted for Cj1282 by TMHMM2.0 at aa 15-37%2C 44-61%2C 65-87%2C 138-153%2C158-177%2C 182-201%2C 265-287%2C 300-322 and 332-354;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1282;part=1/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1214032	1214085	.	+	.	ID=id-Cj1282-2;Note=9 probable transmembrane helices predicted for Cj1282 by TMHMM2.0 at aa 15-37%2C 44-61%2C 65-87%2C 138-153%2C158-177%2C 182-201%2C 265-287%2C 300-322 and 332-354;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1282;part=2/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1214095	1214163	.	+	.	ID=id-Cj1282-2;Note=9 probable transmembrane helices predicted for Cj1282 by TMHMM2.0 at aa 15-37%2C 44-61%2C 65-87%2C 138-153%2C158-177%2C 182-201%2C 265-287%2C 300-322 and 332-354;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1282;part=3/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1214314	1214361	.	+	.	ID=id-Cj1282-2;Note=9 probable transmembrane helices predicted for Cj1282 by TMHMM2.0 at aa 15-37%2C 44-61%2C 65-87%2C 138-153%2C158-177%2C 182-201%2C 265-287%2C 300-322 and 332-354;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1282;part=4/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1214374	1214433	.	+	.	ID=id-Cj1282-2;Note=9 probable transmembrane helices predicted for Cj1282 by TMHMM2.0 at aa 15-37%2C 44-61%2C 65-87%2C 138-153%2C158-177%2C 182-201%2C 265-287%2C 300-322 and 332-354;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1282;part=5/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1214446	1214505	.	+	.	ID=id-Cj1282-2;Note=9 probable transmembrane helices predicted for Cj1282 by TMHMM2.0 at aa 15-37%2C 44-61%2C 65-87%2C 138-153%2C158-177%2C 182-201%2C 265-287%2C 300-322 and 332-354;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1282;part=6/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1214695	1214763	.	+	.	ID=id-Cj1282-2;Note=9 probable transmembrane helices predicted for Cj1282 by TMHMM2.0 at aa 15-37%2C 44-61%2C 65-87%2C 138-153%2C158-177%2C 182-201%2C 265-287%2C 300-322 and 332-354;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1282;part=7/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1214800	1214868	.	+	.	ID=id-Cj1282-2;Note=9 probable transmembrane helices predicted for Cj1282 by TMHMM2.0 at aa 15-37%2C 44-61%2C 65-87%2C 138-153%2C158-177%2C 182-201%2C 265-287%2C 300-322 and 332-354;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1282;part=8/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1214896	1214964	.	+	.	ID=id-Cj1282-2;Note=9 probable transmembrane helices predicted for Cj1282 by TMHMM2.0 at aa 15-37%2C 44-61%2C 65-87%2C 138-153%2C158-177%2C 182-201%2C 265-287%2C 300-322 and 332-354;gbkey=misc_feature;gene=mrdB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1282;part=9/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1215057	1215133	.	+	.	ID=gene-tRNA-Met-2;Name=tRNA-Met;gbkey=Gene;gene=tRNA-Met;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1215057	1215133	.	+	.	ID=rna-tRNA-Met-2;Parent=gene-tRNA-Met-2;Note=tRNA Met anticodon CAT%2C Cove score 97.76;gbkey=tRNA;gene=tRNA-Met;product=tRNA-Met
gi|15791399|ref|NC_002163.1|	EMBL	exon	1215057	1215133	.	+	.	ID=exon-tRNA-Met-2-1;Parent=rna-tRNA-Met-2;Note=tRNA Met anticodon CAT%2C Cove score 97.76;gbkey=tRNA;gene=tRNA-Met;product=tRNA-Met
gi|15791399|ref|NC_002163.1|	EMBL	gene	1215241	1215316	.	-	.	ID=gene-tRNA-Phe;Name=tRNA-Phe;gbkey=Gene;gene=tRNA-Phe;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1215241	1215316	.	-	.	ID=rna-tRNA-Phe;Parent=gene-tRNA-Phe;Note=tRNA Phe anticodon GAA%2C Cove score 85.44;gbkey=tRNA;gene=tRNA-Phe;product=tRNA-Phe
gi|15791399|ref|NC_002163.1|	EMBL	exon	1215241	1215316	.	-	.	ID=exon-tRNA-Phe-1;Parent=rna-tRNA-Phe;Note=tRNA Phe anticodon GAA%2C Cove score 85.44;gbkey=tRNA;gene=tRNA-Phe;product=tRNA-Phe
gi|15791399|ref|NC_002163.1|	EMBL	gene	1215456	1216799	.	+	.	ID=gene-Cj1283;Name=ktrB;gbkey=Gene;gene=ktrB;gene_biotype=protein_coding;locus_tag=Cj1283
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1215456	1216799	.	+	0	ID=cds-CAL35397.1;Parent=gene-Cj1283;Dbxref=EnsemblGenomes-Gn:Cj1283,EnsemblGenomes-Tr:CAL35397,GOA:Q0P8X4,InterPro:IPR003445,InterPro:IPR004772,UniProtKB/TrEMBL:Q0P8X4,NCBI_GP:CAL35397.1;Name=CAL35397.1;Note=Original (2000) note: Cj1283%2C ktrB%2C probable K+ uptake protein%2C len: 447 aa%3B similar to e.g. TR:O87953 (EMBL:D89592) Vibrio alginolyticus K+-uptake system KTRB protein (455 aa)%2C fasta scores%3B opt: 844 z-score: 981.2 E(): 0%2C 33.8%25 identity in 438 aa overlap. Also similar to NTPJ_ENTHR V-type sodium ATP synthase subunit J (451 aa)%2Cfasta scores%3B opt: 853 z-score: 991.7 E(): 0%2C 33.3%25 identity in 447 aa overlap%2C and TRKH_ECOLI TRK system potassium uptake protein TRKH (483 aa)%2C fasta scores%3B opt: 210 z-score: 247.5 E(): 1.7e-06%2C 26.8%25 identity in 426 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02386 Cation transport protein domain identified within CDS. Also%2Celeven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score yet%2C so putative kept within product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:16210320%2C PMID:12562800%2C PMID:9642210;gbkey=CDS;gene=ktrB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1283;product=putative K+ uptake protein;protein_id=CAL35397.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1215492	1215551	.	+	.	ID=id-Cj1283;Note=11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32%2C 42-59%2C 72-94%2C 127-149%2C156-175%2C 190-212%2C 225-247%2C 290-324%2C 345-367%2C 382-404 and 409-430;gbkey=misc_feature;gene=ktrB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1283;part=1/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1215579	1215632	.	+	.	ID=id-Cj1283;Note=11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32%2C 42-59%2C 72-94%2C 127-149%2C156-175%2C 190-212%2C 225-247%2C 290-324%2C 345-367%2C 382-404 and 409-430;gbkey=misc_feature;gene=ktrB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1283;part=2/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1215669	1215737	.	+	.	ID=id-Cj1283;Note=11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32%2C 42-59%2C 72-94%2C 127-149%2C156-175%2C 190-212%2C 225-247%2C 290-324%2C 345-367%2C 382-404 and 409-430;gbkey=misc_feature;gene=ktrB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1283;part=3/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1215834	1215902	.	+	.	ID=id-Cj1283;Note=11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32%2C 42-59%2C 72-94%2C 127-149%2C156-175%2C 190-212%2C 225-247%2C 290-324%2C 345-367%2C 382-404 and 409-430;gbkey=misc_feature;gene=ktrB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1283;part=4/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1215921	1215980	.	+	.	ID=id-Cj1283;Note=11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32%2C 42-59%2C 72-94%2C 127-149%2C156-175%2C 190-212%2C 225-247%2C 290-324%2C 345-367%2C 382-404 and 409-430;gbkey=misc_feature;gene=ktrB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1283;part=5/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1216023	1216091	.	+	.	ID=id-Cj1283;Note=11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32%2C 42-59%2C 72-94%2C 127-149%2C156-175%2C 190-212%2C 225-247%2C 290-324%2C 345-367%2C 382-404 and 409-430;gbkey=misc_feature;gene=ktrB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1283;part=6/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1216128	1216196	.	+	.	ID=id-Cj1283;Note=11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32%2C 42-59%2C 72-94%2C 127-149%2C156-175%2C 190-212%2C 225-247%2C 290-324%2C 345-367%2C 382-404 and 409-430;gbkey=misc_feature;gene=ktrB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1283;part=7/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1216323	1216427	.	+	.	ID=id-Cj1283;Note=11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32%2C 42-59%2C 72-94%2C 127-149%2C156-175%2C 190-212%2C 225-247%2C 290-324%2C 345-367%2C 382-404 and 409-430;gbkey=misc_feature;gene=ktrB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1283;part=8/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1216488	1216556	.	+	.	ID=id-Cj1283;Note=11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32%2C 42-59%2C 72-94%2C 127-149%2C156-175%2C 190-212%2C 225-247%2C 290-324%2C 345-367%2C 382-404 and 409-430;gbkey=misc_feature;gene=ktrB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1283;part=9/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1216599	1216667	.	+	.	ID=id-Cj1283;Note=11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32%2C 42-59%2C 72-94%2C 127-149%2C156-175%2C 190-212%2C 225-247%2C 290-324%2C 345-367%2C 382-404 and 409-430;gbkey=misc_feature;gene=ktrB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1283;part=10/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1216680	1216745	.	+	.	ID=id-Cj1283;Note=11 probable transmembrane helices predicted for Cj1283 by TMHMM2.0 at aa 13-32%2C 42-59%2C 72-94%2C 127-149%2C156-175%2C 190-212%2C 225-247%2C 290-324%2C 345-367%2C 382-404 and 409-430;gbkey=misc_feature;gene=ktrB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1283;part=11/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1215786	1216757	.	+	.	ID=id-Cj1283-2;Note=HMMPfam hit to PF02386%2C Cation transport protein%2Cscore 7.5e-81;gbkey=misc_feature;gene=ktrB;inference=protein motif:Pfam:PF02386;locus_tag=Cj1283
gi|15791399|ref|NC_002163.1|	EMBL	gene	1216810	1217460	.	+	.	ID=gene-Cj1284;Name=ktrA;gbkey=Gene;gene=ktrA;gene_biotype=protein_coding;locus_tag=Cj1284
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1216810	1217460	.	+	0	ID=cds-CAL35398.1;Parent=gene-Cj1284;Dbxref=EnsemblGenomes-Gn:Cj1284,EnsemblGenomes-Tr:CAL35398,GOA:Q0P8X3,InterPro:IPR003148,InterPro:IPR006037,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P8X3,NCBI_GP:CAL35398.1;Name=CAL35398.1;Note=Original (2000) note: Cj1284%2C ktrA%2C probable K+ uptake protein%2C len: 216 aa%3B similar to e.g. TR:O87952 (EMBL:D89592) Vibrio alginolyticus K+-uptake system KTRA protein (220 aa)%2C fasta scores%3B opt: 316 z-score: 371.1 E(): 2.3e-13%2C 29.2%25 identity in 212 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF02254 TrkA-N domain and PF02080 TrkA-C domain identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score yet%2C so putative kept within product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:16210320%2C PMID:12562800%2C PMID:9642210;gbkey=CDS;gene=ktrA;inference=protein motif:Pfam:PF02254;locus_tag=Cj1284;product=putative K+ uptake protein;protein_id=CAL35398.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1216822	1217172	.	+	.	ID=id-Cj1284;Note=HMMPfam hit to PF02254%2C TrkA-N domain%2C score 1.4e-30;gbkey=misc_feature;gene=ktrA;inference=protein motif:Pfam:PF02254;locus_tag=Cj1284
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1217257	1217457	.	+	.	ID=id-Cj1284-2;Note=HMMPfam hit to PF02080%2C TrkA-C domain%2C score 3.7e-05;gbkey=misc_feature;gene=ktrA;inference=protein motif:Pfam:PF02080;locus_tag=Cj1284
gi|15791399|ref|NC_002163.1|	EMBL	gene	1217457	1218128	.	-	.	ID=gene-Cj1285c;Name=Cj1285c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1285c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1217457	1218128	.	-	0	ID=cds-CAL35399.1;Parent=gene-Cj1285c;Dbxref=EnsemblGenomes-Gn:Cj1285c,EnsemblGenomes-Tr:CAL35399,InterPro:IPR003773,UniProtKB/TrEMBL:Q0P8X2,NCBI_GP:CAL35399.1;Name=CAL35399.1;Note=Original (2000) note: Cj1285c%2C unknown%2C len: 223 aa%3B similar to hypothetical proteins e.g. TR:O29858 (EMBL:AE001077) Archaeoglobus fulgidus AF0389 (249 aa)%2Cfasta scores%3B opt: 120 z-score: 148.0 E(): 0.61%2C 23.7%25 identity in 257 aa overlap. 46.8%25 identity to HP0778%3B~Updated (2006) note: Pfam domains PF02621 Uncharacterized ACR%2C COG1427 identified within CDS. Conserved added to product funtion. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02621;locus_tag=Cj1285c;product=conserved hypothetical protein Cj1285c;protein_id=CAL35399.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1217463	1218104	.	-	.	ID=id-Cj1285c;Note=HMMPfam hit to PF02621%2C Uncharacterized ACR%2CCOG1427%2C score 3.5e-26;gbkey=misc_feature;inference=protein motif:Pfam:PF02621;locus_tag=Cj1285c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1218134	1218760	.	-	.	ID=gene-Cj1286c;Name=upp;gbkey=Gene;gene=upp;gene_biotype=protein_coding;locus_tag=Cj1286c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1218134	1218760	.	-	0	ID=cds-CAL35400.1;Parent=gene-Cj1286c;Dbxref=EnsemblGenomes-Gn:Cj1286c,EnsemblGenomes-Tr:CAL35400,GOA:Q9PN13,InterPro:IPR005765,InterPro:IPR029057,NCBI_GP:CAL35400.1;Name=CAL35400.1;Note=Original (2000) note: Cj1286c%2C upp%2C probable uracil phosphoribosyltransferase%2C len: 208 aa%3B similar to e.g. UPP_ECOLI uracil phosphoribosyltransferase (EC 2.4.2.9) (208 aa)%2C fasta scores%3B opt: 623 z-score: 768.4 E(): 0%2C43.3%25 identity in 210 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF00156 Phosphoribosyl transferase domain identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Salvage of nucleosides and nucleotides%3B~PMID:1371255%2C PMID:7798145;gbkey=CDS;gene=upp;inference=protein motif:Pfam:PF00156;locus_tag=Cj1286c;product=uracil phosphoribosyltransferase;protein_id=CAL35400.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1218254	1218601	.	-	.	ID=id-Cj1286c;Note=HMMPfam hit to PF00156%2C Phosphoribosyl transferase domain%2C score 6e-05;gbkey=misc_feature;gene=upp;inference=protein motif:Pfam:PF00156;locus_tag=Cj1286c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1218757	1219992	.	-	.	ID=gene-Cj1287c;Name=Cj1287c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1287c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1218757	1219992	.	-	0	ID=cds-CAL35401.1;Parent=gene-Cj1287c;Dbxref=EnsemblGenomes-Gn:Cj1287c,EnsemblGenomes-Tr:CAL35401,GOA:Q0P8X0,InterPro:IPR001891,InterPro:IPR012301,InterPro:IPR012302,InterPro:IPR015884,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P8X0,NCBI_GP:CAL35401.1;Name=CAL35401.1;Note=Original (2000) note: Cj1287c%2C probable malate oxidoreductase%2C len: 411 aa%3B highly similar to many e.g. MAOX_BACST malate oxidoreductase (NAD) (EC 1.1.1.38) (478 aa)%2C fasta scores%3B opt: 1193 z-score: 1304.5 E(): 0%2C 49.9%25 identity in 411 aa overlap. No Hp match. Contains Pfam match to entry PF00390 malic%2C Malic enzymes%3B~Updated (2006) note: Characterised in more than one genus with acceptable identity scores%2C so putative not added to product function. Functional classification -Central intermediary metabolism - Gluconeogenesis%3B~PMID:1371255%2C PMID:7798145%2C PMID:9535928%2CPMID:36376;gbkey=CDS;inference=protein motif:Pfam:PF00390;locus_tag=Cj1287c;product=malate oxidoreductase;protein_id=CAL35401.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1218820	1219524	.	-	.	ID=id-Cj1287c;Note=HMMPfam hit to PF03949%2C Malic enzyme%2C NAD binding domain%2C score 4.5e-126;gbkey=misc_feature;inference=protein motif:Pfam:PF03949;locus_tag=Cj1287c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1219528	1219953	.	-	.	ID=id-Cj1287c-2;Note=HMMPfam hit to PF00390%2C Malic enzyme%2C N-terminal domain%2C score 1.6e-74;gbkey=misc_feature;inference=protein motif:Pfam:PF00390;locus_tag=Cj1287c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1219994	1221385	.	-	.	ID=gene-Cj1288c;Name=gltX2;gbkey=Gene;gene=gltX2;gene_biotype=protein_coding;locus_tag=Cj1288c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1219994	1221385	.	-	0	ID=cds-CAL35402.1;Parent=gene-Cj1288c;Dbxref=EnsemblGenomes-Gn:Cj1288c,EnsemblGenomes-Tr:CAL35402,GOA:O52914,InterPro:IPR000924,InterPro:IPR001412,InterPro:IPR004527,InterPro:IPR008925,InterPro:IPR014729,InterPro:IPR020058,InterPro:IPR020061,InterPro:IPR020751,NCBI_GP:CAL35402.1;Name=CAL35402.1;Note=Original (2000) note: Cj1288c%2C gltX2%2C probable glutamyl-tRNA synthetase%2C len: 463 aa%3B similar to e.g. SYE_ECOLI glutamyl-tRNA synthetase (EC 6.1.1.17) (471 aa)%2Cfasta scores%3B opt: 1285 z-score: 1465.8 E(): 0%2C 44.1%25 identity in 463 aa overlap. 58.3%25 identity to HP0476. Also similar to gltX Cj0845c (36.7%25 identity in 449 aa overlap). Contains PS00178 Aminoacyl-transfer RNA synthetases class-I signature%2C and Pfam match to entry PF00749 tRNA-synt_1c%2C tRNA synthetases class I (E and Q)%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:3015933;gbkey=CDS;gene=gltX2;inference=protein motif:Prosite:PS00178;locus_tag=Cj1288c;product=glutamyl-tRNA synthetase;protein_id=CAL35402.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1220462	1221376	.	-	.	ID=id-Cj1288c;Note=HMMPfam hit to PF00749%2C tRNA synthetases class I (E and Q)%2C cata%2C score 7.3e-141;gbkey=misc_feature;gene=gltX2;inference=protein motif:Pfam:PF00749;locus_tag=Cj1288c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1221320	1221355	.	-	.	ID=id-Cj1288c-2;Note=PS00178 Aminoacyl-transfer RNA synthetases class-I signature;gbkey=misc_feature;gene=gltX2;inference=protein motif:Prosite:PS00178;locus_tag=Cj1288c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1221450	1222265	.	+	.	ID=gene-Cj1289;Name=Cj1289;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1289
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1221450	1222265	.	+	0	ID=cds-CAL35403.1;Parent=gene-Cj1289;Dbxref=EnsemblGenomes-Gn:Cj1289,EnsemblGenomes-Tr:CAL35403,InterPro:IPR015391,InterPro:IPR027304,PDB:3RGC,UniProtKB/TrEMBL:Q0P8W8,NCBI_GP:CAL35403.1;Name=CAL35403.1;Note=Original (2000) note: Cj1289%2C possible periplasmic protein%2C len: 271 aa%3B 25.8%25 identity to C-terminus of HP0659. Contains possible N-terminal signal sequence. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1289;product=possible periplasmic protein;protein_id=CAL35403.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1221462	1221530	.	+	.	ID=id-Cj1289;Note=1 probable transmembrane helix predicted for Cj1289 by TMHMM2.0 at aa 5-27;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1289
gi|15791399|ref|NC_002163.1|	EMBL	gene	1222303	1223634	.	-	.	ID=gene-Cj1290c;Name=accC;gbkey=Gene;gene=accC;gene_biotype=protein_coding;locus_tag=Cj1290c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1222303	1223634	.	-	0	ID=cds-CAL35404.1;Parent=gene-Cj1290c;Dbxref=EnsemblGenomes-Gn:Cj1290c,EnsemblGenomes-Tr:CAL35404,GOA:Q0P8W7,InterPro:IPR004549,InterPro:IPR005479,InterPro:IPR005481,InterPro:IPR005482,InterPro:IPR011054,InterPro:IPR011761,InterPro:IPR011764,InterPro:IPR013815,InterPro:IPR013816,InterPro:IPR016185,PDB:3OUU,PDB:3OUZ,UniProtKB/TrEMBL:Q0P8W7,NCBI_GP:CAL35404.1;Name=CAL35404.1;Note=Original (2000) note: Cj1290c%2C accC%2C probable biotin carboxylase (subunit of acetyl-CoA carboxylase (EC 6.4.1.2))%2C len: 443 aa%3B highly similar to many e.g. ACCC_ECOLI biotin carboxylase (EC 6.3.4.14) (449 aa)%2Cfasta scores%3B opt: 1560 z-score: 1741.0 E(): 0%2C 53.2%25 identity in 442 aa overlap. 67.0%25 identity to HP0370. Also similar to Cj1037c pycA (46.5%25 identity in 445 aa overlap). Contains PS00866 and PS00867 Carbamoyl-phosphate synthase subdomain signatures 1 and 2%2C and Pfam match to entry PF00289 CPSase_L_chain%2C Carbamoyl-phosphate synthase (CPSase)%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Fatty acid biosynthesis%3B~PMID:1682920%2C PMID:7915138%2C PMID:16325142;gbkey=CDS;gene=accC;inference=protein motif:Prosite:PS00867;locus_tag=Cj1290c;product=biotin carboxylase;protein_id=CAL35404.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1222312	1222629	.	-	.	ID=id-Cj1290c;Note=HMMPfam hit to PF02785%2C Biotin carboxylase C-terminal domain%2C score 2.5e-57;gbkey=misc_feature;gene=accC;inference=protein motif:Pfam:PF02785;locus_tag=Cj1290c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1222627	1223289	.	-	.	ID=id-Cj1290c-2;Note=HMMPfam hit to PF02786%2C Carbamoyl-phosphate synthase L chain%2C%2C score 3.4e-108;gbkey=misc_feature;gene=accC;inference=protein motif:Pfam:PF02786;locus_tag=Cj1290c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1222753	1222776	.	-	.	ID=id-Cj1290c-3;Note=PS00867 Carbamoyl-phosphate synthase subdomain signature 2;gbkey=misc_feature;gene=accC;inference=protein motif:Prosite:PS00867;locus_tag=Cj1290c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1223131	1223175	.	-	.	ID=id-Cj1290c-4;Note=PS00866 Carbamoyl-phosphate synthase subdomain signature 1;gbkey=misc_feature;gene=accC;inference=protein motif:Prosite:PS00866;locus_tag=Cj1290c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1223293	1223631	.	-	.	ID=id-Cj1290c-5;Note=HMMPfam hit to PF00289%2C Carbamoyl-phosphate synthase L chain%2C%2C score 1.6e-46;gbkey=misc_feature;gene=accC;inference=protein motif:Pfam:PF00289;locus_tag=Cj1290c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1223636	1224091	.	-	.	ID=gene-Cj1291c;Name=accB;gbkey=Gene;gene=accB;gene_biotype=protein_coding;locus_tag=Cj1291c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1223636	1224091	.	-	0	ID=cds-CAL35405.1;Parent=gene-Cj1291c;Dbxref=EnsemblGenomes-Gn:Cj1291c,EnsemblGenomes-Tr:CAL35405,GOA:Q0P8W6,InterPro:IPR000089,InterPro:IPR001249,InterPro:IPR011053,UniProtKB/TrEMBL:Q0P8W6,NCBI_GP:CAL35405.1;Name=CAL35405.1;Note=Original (2000) note: Cj1291c%2C accB%2C probable biotin carboxyl carrier protein of acetyl-CoA carboxylase%2Clen: 151 aa%3B similar to e.g. BCCP_ECOLI biotin carboxyl carrier protein of acetyl-CoA carboxylase (EC 6.4.1.2) (156 aa)%2C fasta scores%3B opt: 307 z-score: 329.6 E(): 4.6e-11%2C 38.9%25 identity in 162 aa overlap. 41.4%25 identity to HP0371. Contains Pfam match to entry PF00364 biotin_req_enzy%2C Biotin-requiring enzymes%3B~Updated (2006) note: Some characterisation work carried out within Bacillus subtilis. Putative kept within product function. Functional classification - Fatty acid biosynthesis%3B~PMID:7592499%2C PMID:1358874;gbkey=CDS;gene=accB;inference=protein motif:Pfam:PF00364;locus_tag=Cj1291c;product=putative biotin carboxyl carrier protein of acetyl-CoA carboxylase;protein_id=CAL35405.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1223648	1223872	.	-	.	ID=id-Cj1291c;Note=HMMPfam hit to PF00364%2C Biotin-requiring enzyme%2Cscore 9e-27;gbkey=misc_feature;gene=accB;inference=protein motif:Pfam:PF00364;locus_tag=Cj1291c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1223969	1224010	.	-	.	ID=id-Cj1291c-2;Note=PS01039 Bacterial extracellular solute-binding proteins%2C family 3 signature;gbkey=misc_feature;gene=accB;inference=protein motif:Prosite:PS01039;locus_tag=Cj1291c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1224239	1224799	.	+	.	ID=gene-Cj1292;Name=dcd;gbkey=Gene;gene=dcd;gene_biotype=protein_coding;locus_tag=Cj1292
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1224239	1224799	.	+	0	ID=cds-CAL35406.1;Parent=gene-Cj1292;Dbxref=EnsemblGenomes-Gn:Cj1292,EnsemblGenomes-Tr:CAL35406,GOA:Q9PN07,InterPro:IPR008180,InterPro:IPR011962,InterPro:IPR029054,NCBI_GP:CAL35406.1;Name=CAL35406.1;Note=Original (2000) note: Cj1292%2C dcd%2C possible deoxycytidine triphosphate deaminase%2C len: 186 aa%3B similar to many predicted dcd proteins%2C and to DCD_ECOLI deoxycytidine triphosphate deaminase (EC 3.5.4.13) (193 aa)%2C fasta scores%3B opt: 160 z-score: 203.5 E(): 0.00049%2C28.8%25 identity in 160 aa overlap. 71.4%25 identity to HP0372. Contains Pfam match to entry PF00692 dUTPase%3B~Updated (2006) note: Characterised within Escherichia coli%2C however%2C identity score was marginal. Thus%2C putative kept within product function. Literature search identified papers giving further clues to product function. Functional classification -2'-deoxyribonucleotide biosynthesis%3B~PMID:1324907%2C PMID:14617187;gbkey=CDS;gene=dcd;inference=protein motif:Pfam:PF00692;locus_tag=Cj1292;product=putative deoxycytidine triphosphate deaminase;protein_id=CAL35406.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1224311	1224787	.	+	.	ID=id-Cj1292;Note=HMMPfam hit to PF00692%2C dUTPase%2C score 0.00019;gbkey=misc_feature;gene=dcd;inference=protein motif:Pfam:PF00692;locus_tag=Cj1292
gi|15791399|ref|NC_002163.1|	EMBL	gene	1224849	1225853	.	+	.	ID=gene-Cj1293;Name=pseB;gbkey=Gene;gene=pseB;gene_biotype=protein_coding;locus_tag=Cj1293
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1224849	1225853	.	+	0	ID=cds-CAL35407.1;Parent=gene-Cj1293;Dbxref=EnsemblGenomes-Gn:Cj1293,EnsemblGenomes-Tr:CAL35407,GOA:Q0P8W4,InterPro:IPR003869,InterPro:IPR016040,InterPro:IPR020025,NCBI_GP:CAL35407.1;Name=CAL35407.1;Note=Original (2000) note: Cj1293%2C possible sugar nucleotide epimerase/dehydratase%2C len: 334 aa%3B similar to many e..g TR:Q45984 (EMBL:U27301) Caulobacter crescentus FLAA1 protein (331 aa)%2C fasta scores%3B opt: 1240 z-score: 1410.9 E(): 0%2C 57.8%25 identity in 329 aa overlap%2CCAPD_STAAU CAPD protein (599 aa)%2C fasta scores%3B opt: 529 z-score: 602.6 E(): 2.9e-26%2C 33.9%25 identity in 319 aa overlap%2C and TR:O69130 (EMBL:AF064070) Burkholderia pseudomallei putative epimerase/dehydratase WBII (637 aa)%2Cfasta scores%3B opt: 433 z-score: 493.6 E(): 3.4e-20%2C 30.5%25 identity in 282 aa overlap. 64.6%25 identity to HP0840. Contains PS00017 ATP/GTP-binding site motif A (P-loop%3B~Updated (2006) note: Pfam domain PF02719 Polysaccharide biosynthesis protein identified within CDS. Further support given to product function. Characterised within Campylobacter jejuni. Product function modified to more specific family member. Cj1293 is involved in flagellin glycosylation and has USP-GlcNAc C(6) dehydratase activity. This enzyme catalyzes the first step in the biosynthesis of bacillosamine%2C a sugar found in Campylobacter jejuni glycosylation motifs (PMID:14960321). Recently%2C Cj1293 enzyme was found to exhibit C6 dehydratase as well as a newly identified C5 epimerase activity that resulted in the production of UDP-2-acetamido-2%2C6-dideoxy-beta-L-arabino-4-hexulose and UDP-2-acetamido-2%2C6-dideoxy-alpha-D-xylo-4-hexulose (PMID:16286454). Plays a direct role in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Logan (Susan.Logan@nrc-cnrc.gc.ca) personal communication. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:16421095%2C PMID:16286454%2C PMID:14960321%2CPMID:14617187%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;gene=pseB;inference=protein motif:Prosite:PS00017;locus_tag=Cj1293;product=UDP-GlcNAc-specific C4%2C6 dehydratase/C5 epimerase;protein_id=CAL35407.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1224849	1225745	.	+	.	ID=id-Cj1293;Note=HMMPfam hit to PF02719%2C Polysaccharide biosynthesis protein%2C score 7e-09;gbkey=misc_feature;gene=pseB;inference=protein motif:Pfam:PF02719;locus_tag=Cj1293
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1224882	1224905	.	+	.	ID=id-Cj1293-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=pseB;inference=protein motif:Prosite:PS00017;locus_tag=Cj1293
gi|15791399|ref|NC_002163.1|	EMBL	gene	1225855	1226985	.	+	.	ID=gene-Cj1294;Name=pseC;gbkey=Gene;gene=pseC;gene_biotype=protein_coding;locus_tag=Cj1294
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1225855	1226985	.	+	0	ID=cds-CAL35408.1;Parent=gene-Cj1294;Dbxref=EnsemblGenomes-Gn:Cj1294,EnsemblGenomes-Tr:CAL35408,GOA:Q0P8W3,InterPro:IPR000653,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR020026,NCBI_GP:CAL35408.1;Name=CAL35408.1;Note=Original (2000) note: Cj1294%2C probable aminotransferase%2C len: 376 aa%3B similar to many members of the degT family e.g. SPSC_BACSU spore coat polysaccharide biosynthesis protein (389 aa)%2C fasta scores%3B opt: 586 z-score: 676.7 E(): 2.1e-30%2C 35.3%25 identity in 385 aa overlap%2C and TR:O88001 (EMBL:AJ007747) Bordetella bronchiseptica putative amino-sugar biosynthesis protein WLBC (366 aa)%2C fasta scores%3B opt: 482 z-score: 558.1 E(): 8.7e-24%2C 28.8%25 identity in 330 aa overlap. 44.8%25 identity to HP0366 . Contains Pfam match to entry PF01041 DegT_DnrJ_EryC1%2C DegT/DnrJ/EryC1/StrS family%3B~Updated (2006) note: Specific characterisation with acceptable identity scores has been carried out in Campylobacter jejuni%2C Product modified to more specific family. Putative not added to product function. Cj1294 was demonstrated to be a pyridoxal phosphate-dependent aminotransferase specific for UDP-4-keto-6-deoxy-GlcNAc. These results indicate that Cj1294 is involved in the biosynthesis of diacetamidofucosamine%2C a C4 epimer of diacetamidobacillosamine not yet described in C. jejuni proteoglycans%2C suggesting that the composition of C. jejuni proteoglycans is more variable than anticipated (PMID:15790564). Recent work has demonstrated that Cj1294 utilize only UDP-2-acetamido-2%2C6-dideoxy-beta-L-arabino-4-hexulose as substrate producing UDP-4-amino-4%2C6-dideoxy-beta-L-AltNAc%2Ca precursor in the pseudaminic acid biosynthetic pathway (PMID:16286454). Plays a direct role in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Logan (Susan.Logan@nrc-cnrc.gc.ca) personal communication. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:16421095%2C PMID:15790564%2C PMID:16286454%2CPMID:14960321%2C PMID:14617187%2C PMID:12704196%2CPMID:16573682%2C PMID:12781527;gbkey=CDS;gene=pseC;inference=protein motif:Pfam:PF01041;locus_tag=Cj1294;product=C4 aminotransferase specific for PseB product;protein_id=CAL35408.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1225873	1226946	.	+	.	ID=id-Cj1294;Note=HMMPfam hit to PF01041%2C DegT/DnrJ/EryC1/StrS aminotransferase%2C score 4.6e-110;gbkey=misc_feature;gene=pseC;inference=protein motif:Pfam:PF01041;locus_tag=Cj1294
gi|15791399|ref|NC_002163.1|	EMBL	gene	1226978	1228285	.	+	.	ID=gene-Cj1295;Name=Cj1295;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1295
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1226978	1228285	.	+	0	ID=cds-CAL35409.1;Parent=gene-Cj1295;Dbxref=EnsemblGenomes-Gn:Cj1295,EnsemblGenomes-Tr:CAL35409,InterPro:IPR012353,UniProtKB/TrEMBL:Q0P8W2,NCBI_GP:CAL35409.1;Name=CAL35409.1;Note=Original (2000) note: Cj1295%2C unknown%2C len: 435 aa%3B no Hp match%3B~Updated (2006) note: PIR (Protein Information Resource) database has a match with IPR012353 Uncharacterised conserved protein%2C PIRSF01524 polysaccharide biosynthesis aminopeptidase-like protein. Members of this group from Streptomyces sp. and Brucella melitensis are encoded by polysaccharide biosynthesis gene clusters%2C and are believed to be involved in polysaccharide biosynthesis (PMID:12644223). Members of this group exhibit distant sequence similarity to aminopeptidases. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Unknown%3B~PMID:12644223%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1295;product=conserved hypothetical protein Cj1295;protein_id=CAL35409.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1227121	1227129	.	+	.	ID=id-Cj1295;Note=G(9);gbkey=repeat_region;locus_tag=Cj1295
gi|15791399|ref|NC_002163.1|	EMBL	gene	1228282	1228641	.	+	.	ID=gene-Cj1296;Name=Cj1296;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1296
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1228282	1228641	.	+	0	ID=cds-CAL35410.1;Parent=gene-Cj1296;Dbxref=EnsemblGenomes-Gn:Cj1296,EnsemblGenomes-Tr:CAL35410,GOA:Q0P8W1,InterPro:IPR003679,UniProtKB/TrEMBL:Q0P8W1,NCBI_GP:CAL35410.1;Name=CAL35410.1;Note=Original (2000) note: Cj1296%2C unknown%2C len: 119 aa%3B weak similarity to aminoglycoside N3'-acetyltransferases e.g. AAC3_PSEAE aminoglycoside N3'-acetyltransferase III (271 aa)%2C fasta scores%3B opt: 102 z-score: 144.2 E(): 1%2C31.7%25 identity in 60 aa overlap. No Hp match. Similar to N-terminus of Cj1298 (65.7%25 identity in 105 aa overlap). Similarity continues in downstream ORF Cj1297. There is a G(9) tract at aa 104 that%2C if variable%2C would allow translation to continue into Cj1297%3B~Updated (2006) note: Literature search identified paper linking product function of Cj1296/Cj1297/Cj1298 to antimicrobial efflux pumps. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Antibiotic resistance%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1296;product=hypothetical protein Cj1296;protein_id=CAL35410.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1228591	1228599	.	+	.	ID=id-Cj1296;Note=G(9);gbkey=repeat_region;locus_tag=Cj1296
gi|15791399|ref|NC_002163.1|	EMBL	gene	1228638	1229075	.	+	.	ID=gene-Cj1297;Name=Cj1297;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1297
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1228638	1229075	.	+	0	ID=cds-CAL35411.1;Parent=gene-Cj1297;Dbxref=EnsemblGenomes-Gn:Cj1297,EnsemblGenomes-Tr:CAL35411,GOA:Q0P8W0,InterPro:IPR003679,UniProtKB/TrEMBL:Q0P8W0,NCBI_GP:CAL35411.1;Name=CAL35411.1;Note=Original (2000) note: Cj1297%2C unknown%2C len: 145 aa%3B no Hp match. Similar to C-terminus of Cj1298 (44.7%25 identity in 141 aa overlap). Similarity continues from upstream gene Cj1296. There is a G(9) tract upstream of this start that%2C if variable%2C would allow translation from Cj1296%3B~Updated (2006) note: Literature search identified paper linking product function of Cj1296/Cj1297/Cj1298 to antimicrobial efflux pumps. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Antibiotic resistance%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1297;product=hypotehtical protein Cj1297;protein_id=CAL35411.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1229096	1229887	.	+	.	ID=gene-Cj1298;Name=Cj1298;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1298
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1229096	1229887	.	+	0	ID=cds-CAL35412.1;Parent=gene-Cj1298;Dbxref=EnsemblGenomes-Gn:Cj1298,EnsemblGenomes-Tr:CAL35412,GOA:Q0P8V9,InterPro:IPR003679,UniProtKB/TrEMBL:Q0P8V9,NCBI_GP:CAL35412.1;Name=CAL35412.1;Note=Original (2000) note: Cj1298%2C unknown%2C len: 263 aa%3B weak similarity to aminoglycoside N3'-acetyltransferases e.g. AAC4_SALSP aminoglycoside N3'-acetyltransferase IV (261 aa)%2C fasta scores%3B opt: 139 z-score: 177.8 E(): 0.014%2C 25.7%25 identity in 175 aa overlap. Similar in N- and C-terminus to upstream ORFs Cj1296 (65.7%25 identity in 105 aa overlap)%2C and Cj1297 (44.7%25 identity in 141 aa overlap). No Hp match. There is a G(9) tract that%2C if variable%2C would allow fusion of Cj1296 and Cj1297. There is no equivalent repetitive tract in this CDS%3B~Updated (2006) note: Literature search identified paper linking product function of Cj1296/Cj1297/Cj1298 to antimicrobial efflux pumps. Some characterisation work within Campylobacter jejuni. Product function modified to more specific family member. Putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:15790564%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1298;product=putative N-acetyltransferase;protein_id=CAL35412.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1229918	1230148	.	+	.	ID=gene-Cj1299;Name=acpP2;gbkey=Gene;gene=acpP2;gene_biotype=protein_coding;locus_tag=Cj1299
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1229918	1230148	.	+	0	ID=cds-CAL35413.1;Parent=gene-Cj1299;Dbxref=EnsemblGenomes-Gn:Cj1299,EnsemblGenomes-Tr:CAL35413,InterPro:IPR009081,UniProtKB/TrEMBL:Q0P8V8,NCBI_GP:CAL35413.1;Name=CAL35413.1;Note=Original (2000) note: Cj1299%2C acpP2%2C probable acyl carrier protein%2C len: 76 aa%3B similar to many e.g. ACPH_MYCGE acyl carrier protein homolog (84 aa)%2C fasta scores%3B opt: 111 z-score: 172.6 E(): 0.026%2C 35.8%25 identity in 81 aa overlap. No Hp match. Also similar to acpP Cj0441 (34.1%25 identity in 41 aa overlap)%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Fatty acid biosynthesis%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;gene=acpP2;locus_tag=Cj1299;product=putative acyl carrier protein;protein_id=CAL35413.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1230145	1231038	.	+	.	ID=gene-Cj1300;Name=Cj1300;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1300
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1230145	1231038	.	+	0	ID=cds-CAL35414.1;Parent=gene-Cj1300;Dbxref=EnsemblGenomes-Gn:Cj1300,EnsemblGenomes-Tr:CAL35414,GOA:Q0P8V7,InterPro:IPR029063,UniProtKB/TrEMBL:Q0P8V7,NCBI_GP:CAL35414.1;Name=CAL35414.1;Note=Original (2000) note: Cj1300%2C unknown%2C len: 297 aa%3B no Hp match%3B~Updated (2006) note: Prosite domains PS50193 SAM_BIND%2C SAM (and some other nucleotide) binding motif and PS50124 MET_TRANS%2C Generic methyltransferase were both identified within CDS. Product modified to more specific family member based on motif results. Specific characterisation has not been carried out yet. Putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Misc%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;inference=protein motif:Prosite:PS50193;locus_tag=Cj1300;product=putative SAM domain containing methyltransferase;protein_id=CAL35414.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1231031	1231447	.	+	.	ID=gene-Cj1301;Name=Cj1301;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1301
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1231031	1231447	.	+	0	ID=cds-CAL35415.1;Parent=gene-Cj1301;Dbxref=EnsemblGenomes-Gn:Cj1301,EnsemblGenomes-Tr:CAL35415,InterPro:IPR029068,UniProtKB/TrEMBL:Q0P8V6,NCBI_GP:CAL35415.1;Name=CAL35415.1;Note=Original (2000) note: Cj1301%2C unknown%2C len: 138 aa%3B similar to a hypothetical protein from Pyrococcus horikoshii TR:O58010 (EMBL:AP000001) PH0272 (136 aa)%2Cfasta scores%3B opt: 137 z-score: 188.8 E(): 0.0032%2C 32.8%25 identity in 137 aa overlap. No Hp match%3B~Updated (2006) note: Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Conserved hypothetical proteins%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1301;product=hypothetical protein Cj1301;protein_id=CAL35415.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1231049	1231081	.	+	.	ID=id-Cj1301;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1301
gi|15791399|ref|NC_002163.1|	EMBL	gene	1231444	1233006	.	+	.	ID=gene-Cj1302;Name=Cj1302;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1302
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1231444	1233006	.	+	0	ID=cds-CAL35416.1;Parent=gene-Cj1302;Dbxref=EnsemblGenomes-Gn:Cj1302,EnsemblGenomes-Tr:CAL35416,InterPro:IPR010033,InterPro:IPR010037,InterPro:IPR023214,UniProtKB/TrEMBL:Q0P8V5,NCBI_GP:CAL35416.1;Name=CAL35416.1;Note=Original (2000) note: Cj1302%2C unknown%2C len: 520 aa%3B no Hp match%3B~Updated (2006) note: TIGRFAM domain TIGR01681 HAD-SF-IIIC%2C HAD-superfamily phosphatase subfamily IIIC identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Misc%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1302;product=putative HAD-superfamily phosphatase%2C subfamily IIIC;protein_id=CAL35416.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1232701	1232733	.	+	.	ID=id-Cj1302;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1302
gi|15791399|ref|NC_002163.1|	EMBL	gene	1232996	1234057	.	+	.	ID=gene-Cj1303;Name=fabH2;gbkey=Gene;gene=fabH2;gene_biotype=protein_coding;locus_tag=Cj1303
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1232996	1234057	.	+	0	ID=cds-CAL35417.1;Parent=gene-Cj1303;Dbxref=EnsemblGenomes-Gn:Cj1303,EnsemblGenomes-Tr:CAL35417,GOA:Q9PMZ6,InterPro:IPR013747,InterPro:IPR013751,InterPro:IPR016038,InterPro:IPR016039,NCBI_GP:CAL35417.1;Name=CAL35417.1;Note=Original (2000) note: Cj1303%2C fabH2%2C probable 3-oxoacyl-[acyl-carrier-protein] synthase%2C len: 353 aa%3B similar to e.g. FABH_SPIOL 3-oxoacyl-[acyl-carrier-protein] synthase III precursor (EC 2.3.1.41) (405 aa)%2C fasta scores%3B opt: 418 z-score: 484.2 E(): 1.1e-19%2C 27.4%25 identity in 340 aa overlap. No Hp ortholog%2C Also similar to fabH Cj0328c (31.3%25 identity in 339 aa overlap)%3B~Updated (2006) note: No specific charactersiation with acceptable identity score has been carried out yet%2Cso putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Fatty acid biosynthesis%3B~PMID:11375394%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;gene=fabH2;locus_tag=Cj1303;product=putative 3-oxoacyl-[acyl-carrier-protein] synthase;protein_id=CAL35417.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1234057	1234278	.	+	.	ID=gene-Cj1304;Name=acpP3;gbkey=Gene;gene=acpP3;gene_biotype=protein_coding;locus_tag=Cj1304
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1234057	1234278	.	+	0	ID=cds-CAL35418.1;Parent=gene-Cj1304;Dbxref=EnsemblGenomes-Gn:Cj1304,EnsemblGenomes-Tr:CAL35418,InterPro:IPR009081,UniProtKB/TrEMBL:Q0P8V3,NCBI_GP:CAL35418.1;Name=CAL35418.1;Note=Original (2000) note: Cj1304%2C acpP3%2C probable acyl carrier protein%2C len: 73 aa%3B similar to e.g. CP_MYXXA acyl carrier protein (78 aa)%2C fasta scores%3B opt: 101 z-score: 157.0 E(): 0.19%2C 28.4%25 identity in 74 aa overlap. No Hp match. Also similar to acpP2 Cj1299 (25.4%25 identity in 63 aa overlap)%3B~Updated (2006) note: No specific charactersiation with acceptable identity score has been carried out yet%2Cso putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Fatty acid biosynthesis%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;gene=acpP3;locus_tag=Cj1304;product=putative acyl carrier protein;protein_id=CAL35418.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1234292	1235509	.	-	.	ID=gene-Cj1305c;Name=Cj1305c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1305c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1234292	1235509	.	-	0	ID=cds-CAL35419.1;Parent=gene-Cj1305c;Dbxref=EnsemblGenomes-Gn:Cj1305c,EnsemblGenomes-Tr:CAL35419,InterPro:IPR022605,InterPro:IPR029058,UniProtKB/TrEMBL:Q0P8V2,NCBI_GP:CAL35419.1;Name=CAL35419.1;Note=Original (2000) note: Cj1305c%2C unknown%2C len: 405 aa%3B no Hp match. A member of the 617 family of C.j. proteins containing homopolymeric tracts%3B similar to Cj0617/Cj0618 (38.9%25 identity in 180 aa overlap/37.1%25 identity in 221 aa overlap)%2C Cj1306c (78.1%25 identity in 407 aa overlap)%2C Cj1310c (63.7%25 identity in 402 aa overlap)%2C Cj1342c (38.0%25 identity in 426 aa overlap). Contains a variable polyG-tract at aa 194%3B G(9) (consensus) gives this ORF%2C G(10) would cause truncation after 22 aa%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Unknown%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1305c;product=hypothetical protein Cj1305c (617 family);protein_id=CAL35419.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1235522	1236748	.	-	.	ID=gene-Cj1306c;Name=Cj1306c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1306c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1235522	1236748	.	-	0	ID=cds-CAL35420.1;Parent=gene-Cj1306c;Dbxref=EnsemblGenomes-Gn:Cj1306c,EnsemblGenomes-Tr:CAL35420,InterPro:IPR022605,InterPro:IPR029058,UniProtKB/TrEMBL:Q0P8V1,NCBI_GP:CAL35420.1;Name=CAL35420.1;Note=Original (2000) note: Cj1306c%2C unknown%2C len: 405 aa%3B no Hp match. A member of the 617 family of C.j. proteins containing homopolymeric tracts%3B similar to Cj1310c (59.8%25 identity in 410 aa overlap)%2C Cj1305c (78.1%25 identity in 407 aa overlap)%2C Cj1342c (38.5%25 identity in 426 aa overlap) and Cj0617/Cj0618 (39.2%25 identity in 181 aa overlap/39.5%25 identity in 220 aa overlap). Contains a variable polyG-tract at aa 194%3B G(9) (consensus) gives this ORF%2C G(8) would cause truncation after 5 aa%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Unknown%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1306c;product=hypothetical protein Cj1306c (617 family);protein_id=CAL35420.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1236809	1238317	.	+	.	ID=gene-Cj1307;Name=Cj1307;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1307
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1236809	1238317	.	+	0	ID=cds-CAL35421.1;Parent=gene-Cj1307;Dbxref=EnsemblGenomes-Gn:Cj1307,EnsemblGenomes-Tr:CAL35421,GOA:Q0P8V0,InterPro:IPR000873,InterPro:IPR020845,InterPro:IPR025110,UniProtKB/TrEMBL:Q0P8V0,NCBI_GP:CAL35421.1;Name=CAL35421.1;Note=Original (2000) note: Cj1307%2C possible amino acid activating enzyme%2C len: 502 aa%3B similar to e.g. DLTA_BACSU D-alanine-activating enzyme (EC 6.3.2.-) (503 aa)%2C fasta scores%3B opt: 726 z-score: 837.7 E(): 0%2C 30.3%25 identity in 495 aa overlap%2C and to parts of ENTF_ECOLI enterobactin synthetase component F (1293 aa)%2C fasta scores%3B opt: 549 z-score: 627.8 E(): 1.1e-27%2C 27.4%25 identity in 460 aa overlap%2C and GRSB_BACBR gramicidin S synthetase II (4451 aa)%2C fasta scores%3B opt: 571 z-score: 644.7 E(): 1.3e-28%2C29.9%25 identity in 508 aa overlap. No Hp match. Contains PS00455 Putative AMP-binding domain signature%2C and Pfam match to entry PF00501 AMP-binding%2C AMP-binding enzyme%3B~Updated (2006) note: Similar to many different designations%2C however%2C no specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Cell envelope%3B~PMID:7797557%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;inference=protein motif:Prosite:PS00455;locus_tag=Cj1307;product=putative amino acid activating enzyme;protein_id=CAL35421.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1236908	1238140	.	+	.	ID=id-Cj1307;Note=HMMPfam hit to PF00501%2C AMP-binding enzyme%2C score 1.4e-85;gbkey=misc_feature;inference=protein motif:Pfam:PF00501;locus_tag=Cj1307
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1237274	1237309	.	+	.	ID=id-Cj1307-2;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00455;locus_tag=Cj1307
gi|15791399|ref|NC_002163.1|	EMBL	gene	1238357	1238584	.	+	.	ID=gene-Cj1308;Name=Cj1308;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1308
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1238357	1238584	.	+	0	ID=cds-CAL35422.1;Parent=gene-Cj1308;Dbxref=EnsemblGenomes-Gn:Cj1308,EnsemblGenomes-Tr:CAL35422,InterPro:IPR009081,UniProtKB/TrEMBL:Q0P8U9,NCBI_GP:CAL35422.1;Name=CAL35422.1;Note=Original (2000) note: Cj1308%2C acpP4%2C possible acyl carrier protein%2C len: 75 aa%3B some similartiy to e.g. ACP_CYAPA acyl carrier protein (103 aa)%2C fasta scores%3B opt: 84 z-score: 126.5 E(): 9.5%2C 31.3%25 identity in 64 aa overlap. No Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Fatty acid biosynthesis%3B~PMID:7797557%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1308;product=putative acyl carrier protein;protein_id=CAL35422.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1238581	1239651	.	-	.	ID=gene-Cj1309c;Name=Cj1309c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1309c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1238581	1239651	.	-	0	ID=cds-CAL35423.1;Parent=gene-Cj1309c;Dbxref=EnsemblGenomes-Gn:Cj1309c,EnsemblGenomes-Tr:CAL35423,UniProtKB/TrEMBL:Q0P8U8,NCBI_GP:CAL35423.1;Name=CAL35423.1;Note=Original (2000) note: Cj1309c%2C unknown%2C len 356 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Unknown%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1309c;product=hypothetical protein Cj1309c;protein_id=CAL35423.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1239673	1240887	.	-	.	ID=gene-Cj1310c;Name=Cj1310c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1310c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1239673	1240887	.	-	0	ID=cds-CAL35424.1;Parent=gene-Cj1310c;Dbxref=EnsemblGenomes-Gn:Cj1310c,EnsemblGenomes-Tr:CAL35424,InterPro:IPR022605,InterPro:IPR029058,UniProtKB/TrEMBL:Q0P8U7,NCBI_GP:CAL35424.1;Name=CAL35424.1;Note=Original (2000) note: Cj1310c%2C unknown%2C len: 404 aa%3B no Hp match. A member of the 617 family of C.j. proteins containing homopolymeric tracts%3B similar to Cj1305c (63.7%25 identity in 402 aa overlap)%2C Cj1306c (59.8%25 identity in 410 aa overlap)%2C Cj1342c (37.1%25 identity in 426 aa overlap) and Cj0617/Cj0618 (37.4%25 identity in 182 aa overlap/34.1%25 identity in 220 aa overlap). Contains a variable polyG-tract at aa 194%3B G(9) (consensus) gives this ORF%2C G(10) would cause truncation after 22 aa%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Unknown%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1310c;product=hypothetical protein Cj1310c (617 family);protein_id=CAL35424.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1240966	1241664	.	+	.	ID=gene-Cj1311;Name=pseF;gbkey=Gene;gene=pseF;gene_biotype=protein_coding;locus_tag=Cj1311
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1240966	1241664	.	+	0	ID=cds-CAL35425.1;Parent=gene-Cj1311;Dbxref=EnsemblGenomes-Gn:Cj1311,EnsemblGenomes-Tr:CAL35425,GOA:Q0P8U6,InterPro:IPR003329,InterPro:IPR020039,InterPro:IPR029044,NCBI_GP:CAL35425.1;Name=CAL35425.1;Note=Original (2000) note: Cj1311%2C neuA2%2C probable acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase)%2C len: 232 aa%3B simlar to e.g. NEUA_ECOLI acylneuraminate cytidylyltransferase (EC 2.7.7.43) (CMP-N-acetylneuraminic acid synthetase) (419 aa)%2C fasta scores%3B opt: 316 z-score: 379.1 E(): 8.2e-14%2C 29.0%25 identity in 231 aa overlap. 39.6%25 identity to HP0326. Also similar to Cj1143 (31.6%25 identity in 215 aa overlap)%2C and Cj1331 (32.9%25 identity in 234 aa overlap)%3B~Updated (2006) note: Pfam domain PF02348 Cytidylyltransferase identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative kept within product function. Recently designated within Campylobacter jejuni 81176 as pseF. Recent analysis work carried out in Campylobacter shows putative role in pseudaminic acid synthesis. PseF is thought to allow PseAc to form CMP-PseAc. Plays a direct role in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:2549035%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;gene=pseF;inference=protein motif:Pfam:PF02348;locus_tag=Cj1311;product=putative acylneuraminate cytidylyltransferase;protein_id=CAL35425.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1240975	1241661	.	+	.	ID=id-Cj1311;Note=HMMPfam hit to PF02348%2C Cytidylyltransferase%2C score 2e-25;gbkey=misc_feature;gene=pseF;inference=protein motif:Pfam:PF02348;locus_tag=Cj1311
gi|15791399|ref|NC_002163.1|	EMBL	gene	1241648	1242472	.	+	.	ID=gene-Cj1312;Name=pseG;gbkey=Gene;gene=pseG;gene_biotype=protein_coding;locus_tag=Cj1312
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1241648	1242472	.	+	0	ID=cds-CAL35426.1;Parent=gene-Cj1312;Dbxref=EnsemblGenomes-Gn:Cj1312,EnsemblGenomes-Tr:CAL35426,GOA:Q0P8U5,InterPro:IPR020023,PDB:3HBM,PDB:3HBN,NCBI_GP:CAL35426.1;Name=CAL35426.1;Note=Original (2000) note: Cj1312%2C possible flagellar protein%2C len: 274 aa%3B similar to e.g. SPSG_BACSU spore coat polysaccharide biosynthesis protein SPSG (222 aa)%2Cfasta scores%3B opt: 166 z-score: 208.1 E(): 0.00028%2C 24.8%25 identity in 226 aa overlap%2C and TR:Q45987 (EMBL:U27302) Caulobacter crescentus FLAR (329 aa)%2C fasta scores%3B opt: 234 z-score: 286.7 E(): 1.2e-08%2C 23.1%25 identity in 277 aa overlap%3B~Updated (2006) note: Characterised in Campylobacter jejuni (PMID:16728396). Product function further updated. Putative not added to product function. Plays a direct role in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Logan (Susan.Logan@nrc-cnrc.gc.ca) personal communication. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:16728396%2C PMID:16751642%2C PMID:16573682%2CPMID:12781527%2C PMID:16684771%2C PMID:16728396;gbkey=CDS;gene=pseG;locus_tag=Cj1312;product=nucleotidase specific for PseC product%2CUDP-4-amino-4%2C6-dideoxy-beta-L-AltNAc;protein_id=CAL35426.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1242469	1242942	.	+	.	ID=gene-Cj1313;Name=pseH;gbkey=Gene;gene=pseH;gene_biotype=protein_coding;locus_tag=Cj1313
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1242469	1242942	.	+	0	ID=cds-CAL35427.1;Parent=gene-Cj1313;Dbxref=EnsemblGenomes-Gn:Cj1313,EnsemblGenomes-Tr:CAL35427,GOA:Q0P8U4,InterPro:IPR000182,InterPro:IPR016181,InterPro:IPR020036,NCBI_GP:CAL35427.1;Name=CAL35427.1;Note=Original (2000) note: Cj1313%2C possible flagellar protein%2C len: 157 aa%3B similar to e.g. TR:Q45990 (EMBL:U28867) Caulobacter crescentus FLAG. 31.9%25 identity to HP0327%3B~Updated (2006) note: Pfam domain PF00583 Acetyltransferase (GNAT) family identified within CDS. Recent characterisation work in Campylobacter has linked this protein to be part of the biosynthetic pathway for pseudaminic acid and bacillosamine biosynthesis. In particular%2C PseH is thought to operate between UDP-6-deosy-beta-L-AltNAc4NAc to 6-deoxy-beta-L-AltNAc4NAc. Plays a direct role in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Logan (Susan.Logan@nrc-cnrc.gc.ca) personal communication. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:16684771%2C PMID:16751642%2C PMID:9748431%2CPMID:16573682%2C PMID:12781527;gbkey=CDS;gene=pseH;inference=protein motif:Pfam:PF00583;locus_tag=Cj1313;product=N-acetyltransferase specific for PseC product%2CUDP-4-amino-4%2C6-dideoxy-beta-L-AltNAc;protein_id=CAL35427.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1242637	1242870	.	+	.	ID=id-Cj1313;Note=HMMPfam hit to PF00583%2C Acetyltransferase (GNAT) family%2C score 1.3e-10;gbkey=misc_feature;gene=pseH;inference=protein motif:Pfam:PF00583;locus_tag=Cj1313
gi|15791399|ref|NC_002163.1|	EMBL	gene	1242907	1243653	.	-	.	ID=gene-Cj1314c;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=Cj1314c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1242907	1243653	.	-	0	ID=cds-CAL35428.1;Parent=gene-Cj1314c;Dbxref=EnsemblGenomes-Gn:Cj1314c,EnsemblGenomes-Tr:CAL35428,GOA:Q0P8U3,InterPro:IPR006062,InterPro:IPR011060,InterPro:IPR013785,NCBI_GP:CAL35428.1;Name=CAL35428.1;Note=Original (2000) note: Cj1314c%2C probable cyclase%2Clen: 248 aa%3B similar to many e.g. HIS6_BACSU HisF protein (cyclase) (252 aa)%2C fasta scores%3B opt: 562 z-score: 655.9 E(): 3.1e-29%2C 38.3%25 identity in 253 aa overlap. No Hp match. Also similar to hisF Cj1603 (36.5%25 identity in 255 aa overlap). Contains Pfam match to entry PF00977 His_biosynth%2C Histidine biosynthesis protein%3B~Updated (2006) note: Characterisation work carried out within Escherichia coli (PMID:8494895%2C PMID:11208798) and Thermotoga maritima (PMID:11839304%2C PMID:11264293). Some work also carried out in Campylobacter jejuni (PMID:11461915). Appropriate motifs were present. Putative not added to product function. Recently shown to play no part in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Misc%3B~PMID:11839304%2C PMID:8494895%2C PMID:11208798%2CPMID:11264293%2C PMID:11461915;gbkey=CDS;gene=hisF;inference=protein motif:Pfam:PF00977;locus_tag=Cj1314c;product=imidazole glycerol phosphate synthase subunit;protein_id=CAL35428.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1242964	1243641	.	-	.	ID=id-Cj1314c;Note=HMMPfam hit to PF00977%2C Histidine biosynthesis protein%2C score 1.2e-71;gbkey=misc_feature;gene=hisF;inference=protein motif:Pfam:PF00977;locus_tag=Cj1314c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1243654	1244259	.	-	.	ID=gene-Cj1315c;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=Cj1315c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1243654	1244259	.	-	0	ID=cds-CAL35429.1;Parent=gene-Cj1315c;Dbxref=EnsemblGenomes-Gn:Cj1315c,EnsemblGenomes-Tr:CAL35429,GOA:Q0P8U2,InterPro:IPR010139,InterPro:IPR017926,InterPro:IPR029062,NCBI_GP:CAL35429.1;Name=CAL35429.1;Note=Original (2000) note: Cj1315c%2C probable amidotransferase%2C len: 201 aa%3B similar to many e.g. HIS5_BACSU amidotransferase HISH (212 aa)%2C fasta scores%3B opt: 536 z-score: 660.1 E(): 1.8e-29%2C 41.3%25 identity in 208 aa overlap. No Hp match. Also similar to hisH Cj1600 (39.2%25 identity in 199 aa overlap). Contains PS00442 Glutamine amidotransferases class-I active site%2C and Pfam match to entry PF00117 GATase%2C Glutamine amidotransferases class-I%3B~Updated (2006) note: Characterisation work carried out within Escherichia coli (PMID:11461915%2C PMID:11551184) and Thermotoga maritima (PMID:11839304%2C PMID:11264293). Some work also carried out in Campylobacter jejuni (PMID:11461915). Appropriate motifs were present. Putative not added to product function. Recently shown to play no part in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Misc%3B~PMID:11461915%2C PMID:11551184%2C PMID:8494895%2CPMID:11839304%2C PMID:11264293;gbkey=CDS;gene=hisH;inference=protein motif:Prosite:PS00442;locus_tag=Cj1315c;product=imidazole glycerol phosphate synthase subunit;protein_id=CAL35429.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1243657	1244253	.	-	.	ID=id-Cj1315c;Note=HMMPfam hit to PF00117%2C Glutamine amidotransferase class-I%2C score 1.6e-38;gbkey=misc_feature;gene=hisH;inference=protein motif:Pfam:PF00117;locus_tag=Cj1315c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1243660	1244238	.	-	.	ID=id-Cj1315c-2;Note=HMMPfam hit to PF01174%2C SNO glutamine amidotransferase family%2C score 0.0029;gbkey=misc_feature;gene=hisH;inference=protein motif:Pfam:PF01174;locus_tag=Cj1315c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1244002	1244037	.	-	.	ID=id-Cj1315c-3;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=hisH;inference=protein motif:Prosite:PS00442;locus_tag=Cj1315c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1244256	1245392	.	-	.	ID=gene-Cj1316c;Name=pseA;gbkey=Gene;gene=pseA;gene_biotype=protein_coding;locus_tag=Cj1316c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1244256	1245392	.	-	0	ID=cds-CAL35430.1;Parent=gene-Cj1316c;Dbxref=EnsemblGenomes-Gn:Cj1316c,EnsemblGenomes-Tr:CAL35430,InterPro:IPR020022,UniProtKB/TrEMBL:Q0P8U1,NCBI_GP:CAL35430.1;Name=CAL35430.1;Note=Original (2000) note: Cj1316c%2C unknown%2C len: 378 aa%3B similar to e.g. TR:P72140 (EMBL:U50396) Pseudomonas aeruginosa WBPG (lipopolysaccharide gene cluster) (376 aa)%2C fasta scores%3B opt: 257 z-score: 302.0 E(): 1.6e-09%2C23.5%25 identity in 366 aa overlap. No Hp match. Also similar to Cj1324 (33.2%25 identity in 373 aa overlap)%3B~Updated (2006) note: Prosite domain PS00761 SPASE_I_3%2C Peptidase S26A%2C signal peptidase I identified within CDS. Product function modified to more specific family member based on motif match. PseA has been proposed to play a role in the pseudaminic acid biosynthetic pathway by appearing to synthesize pseudaminic acid (PseAm) directly from PseAc by transfer of an acetamidino group (PMID:11461915). Plays a direct role in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am biosynthesis or transfer. Logan (Susan.Logan@nrc-cnrc.gc.ca) personal communication. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:16573682%2C PMID:12781527%2C PMID:16684771;gbkey=CDS;gene=pseA;inference=protein motif:Prosite:PS00761;locus_tag=Cj1316c;product=pseudaminic acid biosynthesis PseA protein;protein_id=CAL35430.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1244259	1244270	.	-	.	ID=id-Cj1316c;Note=PS00294 Prenyl group binding site (CAAX box);gbkey=misc_feature;gene=pseA;inference=protein motif:Prosite:PS00294;locus_tag=Cj1316c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1244961	1245002	.	-	.	ID=id-Cj1316c-2;Note=PS00761 Signal peptidases I signature 3;gbkey=misc_feature;gene=pseA;inference=protein motif:Prosite:PS00761;locus_tag=Cj1316c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1245650	1246681	.	+	.	ID=gene-Cj1317;Name=pseI;gbkey=Gene;gene=pseI;gene_biotype=protein_coding;locus_tag=Cj1317
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1245650	1246681	.	+	0	ID=cds-CAL35431.1;Parent=gene-Cj1317;Dbxref=EnsemblGenomes-Gn:Cj1317,EnsemblGenomes-Tr:CAL35431,GOA:Q0P8U0,InterPro:IPR006190,InterPro:IPR013132,InterPro:IPR013785,InterPro:IPR013974,InterPro:IPR020030,NCBI_GP:CAL35431.1;Name=CAL35431.1;Note=Original (2000) note: Cj1317%2C neuB3%2CN-acetylneuraminic acid synthetase%2C len: 343 aa%3B 97.6%25 identical to TR:O52907 (EMBL:AJ000855) C. jejuni neuB%2C and similar to e.g. TR:Q57265 (EMBL:U40740) Neisseria meningitidis N-acetylneuraminic acid synthetase (EC 4.1.3.-) (349 aa)%2C fasta scores%3B opt: 584 z-score: 664.1 E(): 1.1e-29%2C 35.1%25 identity in 350 aa overlap. 49.5%25 identity to HP0178. Also similar to Cj1327 (36.3%25 identity in 336 aa overlap)%2C and Cj1141 (34.7%25 identity in 340 aa overlap)%3B~Updated (2006) note: Pfam domain PF03102 NeuB family identified within CDS. Further support given to product function. Recent characterisation has shown PseI to be responsible for the conversion of 6-deoxy-beta-L-AltNAc4NAc to Pse5NAc7NAc in the pseudaminic acid biosynthesis pathway. Plays a direct role in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Logan (Susan.Logan@nrc-cnrc.gc.ca) personal communication. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:11461915%2C PMID:16120604%2C PMID:10712693%2CPMID:11832511%2C PMID:16421095;gbkey=CDS;gene=pseI;inference=protein motif:Pfam:PF03102;locus_tag=Cj1317;product=Pse synthetase;protein_id=CAL35431.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1245743	1246465	.	+	.	ID=id-Cj1317;Note=HMMPfam hit to PF03102%2C NeuB family%2C score 2.3e-103;gbkey=misc_feature;gene=pseI;inference=protein motif:Pfam:PF03102;locus_tag=Cj1317
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1246508	1246678	.	+	.	ID=id-Cj1317-2;Note=HMMPfam hit to PF01354%2C Antifreeze-like domain%2Cscore 5.4e-28;gbkey=misc_feature;gene=pseI;inference=protein motif:Pfam:PF01354;locus_tag=Cj1317
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1246670	1248629	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1246670..1248629;Note=repeat 3%3B identical to 1263498..1265455 (approx. positions);gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	gene	1246678	1248627	.	+	.	ID=gene-Cj1318;Name=maf1;gbkey=Gene;gene=maf1;gene_biotype=protein_coding;locus_tag=Cj1318
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1246678	1248627	.	+	0	ID=cds-CAL35432.1;Parent=gene-Cj1318;Dbxref=EnsemblGenomes-Gn:Cj1318,EnsemblGenomes-Tr:CAL35432,InterPro:IPR002826,UniProtKB/TrEMBL:Q0P8S3,NCBI_GP:CAL35432.1;Name=CAL35432.1;Note=Original (2000) note: Cj1318%2C unknown%2C len: 649 aa%3B no Hp ortholog%2C but 33.9%25 identity to HP0114. A member of the 1318 family of proteins. Similar to Cj1335/Cj1336 (100.0%25 identity in 59 aa overlap/100.0%25 identity in 592 aa overlap)%2C Cj1333 (72.5%25 identity in 658 aa overlap)%2CCj1334 (41.5%25 identity in 648 aa overlap)%2C Cj1337 (48.1%25 identity in 643 aa overlap)%2C Cj1341c (30.2%25 identity in 640 aa overlap)%2C Cj1340c (31.4%25 identity in 641 aa overlap). Contains G(10-11) polymorphic tract at aa 57. G(11) (consensus) gives this ORF%2C G(10) causes truncation after 1 aa%3B~Updated (2006) note: Pfam domain PF01973 Protein of unknown function DUF115 identified within CDS. Characterisation work has been carried out within Campylobacter jejuni (PMID:11895937). Product function modified to more specific family member. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Misc%3B~PMID:11895937%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;gene=maf1;inference=protein motif:Pfam:PF01973;locus_tag=Cj1318;product=motility accessory factor (function unknown);protein_id=CAL35432.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1247329	1247835	.	+	.	ID=id-Cj1318;Note=HMMPfam hit to PF01973%2C Protein of unknown function DUF115%2C score 4.6e-79;gbkey=misc_feature;gene=maf1;inference=protein motif:Pfam:PF01973;locus_tag=Cj1318
gi|15791399|ref|NC_002163.1|	EMBL	gene	1248624	1249595	.	+	.	ID=gene-Cj1319;Name=Cj1319;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1319
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1248624	1249595	.	+	0	ID=cds-CAL35433.1;Parent=gene-Cj1319;Dbxref=EnsemblGenomes-Gn:Cj1319,EnsemblGenomes-Tr:CAL35433,GOA:Q0P8T8,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P8T8,NCBI_GP:CAL35433.1;Name=CAL35433.1;Note=Original (2000) note: Cj1319%2C probable nucleotide sugar dehydratase%2C len: 323 aa%3B similar to e.g. TR:Q54116 (EMBL:L37354) thymidine diphosphoglucose 4%2C6-dehydratase (329 aa)%2C fasta scores%3B opt: 526 z-score: 600.3 E(): 3.9e-26%2C 29.5%25 identity in 315 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00106 adh_short%2CAlcohol/other dehydrogenases%2C short chain type%3B~Updated (2006) note: Pfam domain now altered to PF01370 NAD dependent epimerase/dehydratase family. Further support given to product function. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification -Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;inference=protein motif:Pfam:PF01370;locus_tag=Cj1319;product=putative nucleotide sugar dehydratase;protein_id=CAL35433.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1248633	1249562	.	+	.	ID=id-Cj1319;Note=HMMPfam hit to PF01370%2C NAD dependent epimerase/dehydratase family%2C score 5e-63;gbkey=misc_feature;inference=protein motif:Pfam:PF01370;locus_tag=Cj1319
gi|15791399|ref|NC_002163.1|	EMBL	gene	1249588	1250742	.	+	.	ID=gene-Cj1320;Name=Cj1320;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1320
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1249588	1250742	.	+	0	ID=cds-CAL35434.1;Parent=gene-Cj1320;Dbxref=EnsemblGenomes-Gn:Cj1320,EnsemblGenomes-Tr:CAL35434,GOA:Q0P8T7,InterPro:IPR000653,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,InterPro:IPR026385,UniProtKB/TrEMBL:Q0P8T7,NCBI_GP:CAL35434.1;Name=CAL35434.1;Note=Original (2000) note: Cj1320%2C probable aminotransferase%2C len: 384 aa%3B similar to members of the degT family e.g. TR:Q06953 (EMBL:X59554) Vibrio cholerae RFBE protein (367 aa)%2C fasta scores%3B opt: 315 z-score: 377.4 E(): 1e-13%2C 32.7%25 identity in 361 aa overlap. No Hp ortholog. Contains Pfam match to entry PF01041 DegT_DnrJ_EryC1%2C DegT/DnrJ/EryC1/StrS family%3B~Updated (2006) note: No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;inference=protein motif:Pfam:PF01041;locus_tag=Cj1320;product=putative aminotransferase (degT family);protein_id=CAL35434.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1249654	1250739	.	+	.	ID=id-Cj1320;Note=HMMPfam hit to PF01041%2C DegT/DnrJ/EryC1/StrS aminotransferase%2C score 1.3e-71;gbkey=misc_feature;inference=protein motif:Pfam:PF01041;locus_tag=Cj1320
gi|15791399|ref|NC_002163.1|	EMBL	gene	1250852	1251394	.	+	.	ID=gene-Cj1321;Name=Cj1321;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1321
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1250852	1251394	.	+	0	ID=cds-CAL35435.1;Parent=gene-Cj1321;Dbxref=EnsemblGenomes-Gn:Cj1321,EnsemblGenomes-Tr:CAL35435,GOA:Q0P8T6,InterPro:IPR001451,InterPro:IPR011004,InterPro:IPR016185,UniProtKB/TrEMBL:Q0P8T6,NCBI_GP:CAL35435.1;Name=CAL35435.1;Note=Original (2000) note: Cj1321%2C probable transferase%2Clen: 180 aa%3B similar to TR:Q46674 (EMBL:U05248) E. coli polysialic acid gene cluster region 2 neuD (207 aa)%2C fasta scores%3B opt: 267 z-score: 337.2 E(): 1.8e-11%2C 29.6%25 identity in 162 aa overlap%2C some simialrity to e.g. LPXA_BRUAB acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (283 aa)%2C fasta scores%3B opt: 134 z-score: 173.4 E(): 0.025%2C 31.6%25 identity in 95 aa overlap. No Hp match. Also similar to Cj1123c wlaI (30.2%25 identity in 179 aa overlap). Contains 2x Pfam match to entry PF00132 hexapep%2C Bacterial transferase hexapeptide (four repeats). Upstream region contains a G(10-11) hypervariable tract%3B~Updated (2006) note: No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Literature search identified paper linking Cj1321-Cj1326 as being a glycosylation islet (PMID:16230626). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:16230626%2C PMID:11832511%2C PMID:16573682%2CPMID:12781527;gbkey=CDS;inference=protein motif:Pfam:PF00132;locus_tag=Cj1321;product=putative transferase;protein_id=CAL35435.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1251140	1251193	.	+	.	ID=id-Cj1321;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 0.66;gbkey=misc_feature;inference=protein motif:Pfam:PF00132;locus_tag=Cj1321
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1251248	1251301	.	+	.	ID=id-Cj1321-2;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 7.8;gbkey=misc_feature;inference=protein motif:Pfam:PF00132;locus_tag=Cj1321
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1251302	1251355	.	+	.	ID=id-Cj1321-3;Note=HMMPfam hit to PF00132%2C Bacterial transferase hexapeptide (three rep%2C score 31;gbkey=misc_feature;inference=protein motif:Pfam:PF00132;locus_tag=Cj1321
gi|15791399|ref|NC_002163.1|	EMBL	gene	1251467	1251787	.	+	.	ID=gene-Cj1322;Name=Cj1322;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1322
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1251467	1251787	.	+	0	ID=cds-CAL35436.1;Parent=gene-Cj1322;Dbxref=EnsemblGenomes-Gn:Cj1322,EnsemblGenomes-Tr:CAL35436,GOA:Q0P8T5,InterPro:IPR006176,UniProtKB/TrEMBL:Q0P8T5,NCBI_GP:CAL35436.1;Name=CAL35436.1;Note=Original (2000) note: Cj1322%2C unknown%2C len: 106 aa%3B no Hp match%3B~Updated (2006) note: Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Literature search identified paper linking Cj1321-Cj1326 as being a glycosylation islet (PMID:16230626). Functional classification - Unknown%3B~PMID:16230626%2C PMID:12586395%2C PMID:16573682%2CPMID:12781527;gbkey=CDS;locus_tag=Cj1322;product=hypothetical protein Cj1322;protein_id=CAL35436.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1251775	1252161	.	+	.	ID=gene-Cj1323;Name=Cj1323;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1323
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1251775	1252161	.	+	0	ID=cds-CAL35437.1;Parent=gene-Cj1323;Dbxref=EnsemblGenomes-Gn:Cj1323,EnsemblGenomes-Tr:CAL35437,UniProtKB/TrEMBL:Q0P8T4,NCBI_GP:CAL35437.1;Name=CAL35437.1;Note=Original (2000) note: Cj1323%2C unknown%2C len: 128 aa%3B no Hp match%3B~Updated (2006) note: Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Literature search identified paper linking Cj1321-Cj1326 as being a glycosylation islet (PMID:16230626). Functional classification - Unknown%3B~PMID:16230626%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1323;product=hypothetical protein Cj1323;protein_id=CAL35437.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1252278	1253399	.	+	.	ID=gene-Cj1324;Name=Cj1324;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1324
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1252278	1253399	.	+	0	ID=cds-CAL35438.1;Parent=gene-Cj1324;Dbxref=EnsemblGenomes-Gn:Cj1324,EnsemblGenomes-Tr:CAL35438,InterPro:IPR014729,InterPro:IPR020022,UniProtKB/TrEMBL:Q0P8T3,NCBI_GP:CAL35438.1;Name=CAL35438.1;Note=Original (2000) note: Cj1324%2C unknown%2C len: 373 aa%3B some similarity to TR:P72140 (EMBL:U50396) Pseudomonas aeruginosa WBPG (lipopolysaccharide gene cluster) (376 aa)%2C fasta scores%3B opt: 166 z-score: 199.7 E(): 0.0008%2C20.1%25 identity in 378 aa overlap. No Hp match. Also similar to Cj1316c%3B~Updated (2006) note: Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Literature search identified paper linking Cj1321-Cj1326 as being a glycosylation islet (PMID:16230626). Also shows some similarity to Cj1316 pseudaminic acid biosynthesis PseA protein. Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:16230626%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1324;product=hypothetical protein Cj1324;protein_id=CAL35438.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1253417	1254092	.	+	.	ID=gene-Cj1325;Name=Cj1325;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1325
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1253417	1253671	.	+	0	ID=cds-CAL35439.1;Parent=gene-Cj1325;Dbxref=EnsemblGenomes-Gn:Cj1325,EnsemblGenomes-Tr:CAL35439,GOA:Q0P8T2,InterPro:IPR029063,UniProtKB/TrEMBL:Q0P8T2,NCBI_GP:CAL35439.1;Name=CAL35439.1;Note=Original (2000) note: Cj1326%2C unknown%2C len: 140 aa%3B no Hp match. Contains polyporphic sequence G(9-10) at N-terminus%3B G(9) allows translation from the upstream CDS Cj1325%2C G(10) (consensus) would only allow this CDS to start at aa 22. Similar to Cj0171 (51.9%25 identity in 135 aa overlap)%2C which also contains a polymorphic sequence allowing possible translation from Cj0170%3B~Original (2000) note: Cj1325%2C unknown%2C len: 89 aa%3B no Hp match. Contains polyporphic sequence G(9-10) at C-terminus%3B G(10) (consensus) gives this translation stop%2CG(9) allows translation into the downstream CDS Cj1326. Similar to Cj0170 (73.8%25 identity in 61 aa overlap)%2C which also contains a polymorphic sequence allowing possible translation into Cj0171%3B~Updated (2006) note: Pfam domains PF08241 and PPF08242 both Methyltransferase domains were identified within CDS. Product function modified to more specific family member. No specific characterisation has been carried out yet. Putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Literature search identified paper linking Cj1321-Cj1326 as being a glycosylation islet (PMID:16230626). Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj1325 and Cj1326 as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Misc%3B~PMID:16230626%2C PMID:14985343;gbkey=CDS;inference=protein motif:Pfam:PF08242;locus_tag=Cj1325;product=putative methyltransferase;protein_id=CAL35439.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1253673	1254092	.	+	0	ID=cds-CAL35439.1;Parent=gene-Cj1325;Dbxref=EnsemblGenomes-Gn:Cj1325,EnsemblGenomes-Tr:CAL35439,GOA:Q0P8T2,InterPro:IPR029063,UniProtKB/TrEMBL:Q0P8T2,NCBI_GP:CAL35439.1;Name=CAL35439.1;Note=Original (2000) note: Cj1326%2C unknown%2C len: 140 aa%3B no Hp match. Contains polyporphic sequence G(9-10) at N-terminus%3B G(9) allows translation from the upstream CDS Cj1325%2C G(10) (consensus) would only allow this CDS to start at aa 22. Similar to Cj0171 (51.9%25 identity in 135 aa overlap)%2C which also contains a polymorphic sequence allowing possible translation from Cj0170%3B~Original (2000) note: Cj1325%2C unknown%2C len: 89 aa%3B no Hp match. Contains polyporphic sequence G(9-10) at C-terminus%3B G(10) (consensus) gives this translation stop%2CG(9) allows translation into the downstream CDS Cj1326. Similar to Cj0170 (73.8%25 identity in 61 aa overlap)%2C which also contains a polymorphic sequence allowing possible translation into Cj0171%3B~Updated (2006) note: Pfam domains PF08241 and PPF08242 both Methyltransferase domains were identified within CDS. Product function modified to more specific family member. No specific characterisation has been carried out yet. Putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Literature search identified paper linking Cj1321-Cj1326 as being a glycosylation islet (PMID:16230626). Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj1325 and Cj1326 as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Misc%3B~PMID:16230626%2C PMID:14985343;gbkey=CDS;inference=protein motif:Pfam:PF08242;locus_tag=Cj1325;product=putative methyltransferase;protein_id=CAL35439.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1254132	1255136	.	+	.	ID=gene-Cj1327;Name=neuB2;gbkey=Gene;gene=neuB2;gene_biotype=protein_coding;locus_tag=Cj1327
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1254132	1255136	.	+	0	ID=cds-CAL35440.1;Parent=gene-Cj1327;Dbxref=EnsemblGenomes-Gn:Cj1327,EnsemblGenomes-Tr:CAL35440,GOA:Q0P8T1,InterPro:IPR006190,InterPro:IPR013132,InterPro:IPR013785,InterPro:IPR013974,InterPro:IPR020007,NCBI_GP:CAL35440.1;Name=CAL35440.1;Note=Original (2000) note: Cj1327%2C neuB2%2CN-acetylneuraminic acid synthetase%2C len: 334 aa%3B similar to e.g. TR:Q46675 (EMBL:U05248) E.coli polysialic acid gene cluster region 2 neuB (346 aa)%2C fasta scores%3B opt: 1112 z-score: 1285.6 E(): 0%2C 51.5%25 identity in 336 aa overlap%2C and TR:Q57265 (EMBL:U40740) Neisseria meningitidis N-acetylneuraminic acid synthetase (EC 4.1.3.-) (349 aa)%2C fasta scores%3B opt: 624 z-score: 724.6 E(): 4.6e-33%2C 34.5%25 identity in 333 aa overlap%3B~Updated (2006) note: Pfam domains PF03102 NeuB family was identified within CDS. Prosite domains PS00141 ASP_PROTEASE%2C Peptidase aspartic%2C active site and PS00867 CPSASE_2%2C Carbamoyl-phosphate synthase L chain%2CATP-binding were both identified within CDS. Further support given to product function. Characterised within Campylobacter jejuni (PMID:10712693). Putative not added to product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:10712693%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;gene=neuB2;inference=protein motif:Prosite:PS00867;locus_tag=Cj1327;product=N-acetylneuraminic acid synthetase;protein_id=CAL35440.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1254201	1254929	.	+	.	ID=id-Cj1327;Note=HMMPfam hit to PF03102%2C NeuB family%2C score 1.8e-121;gbkey=misc_feature;gene=neuB2;inference=protein motif:Pfam:PF03102;locus_tag=Cj1327
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1254210	1254245	.	+	.	ID=id-Cj1327-2;Note=PS00141 Eukaryotic and viral aspartyl proteases active site;gbkey=misc_feature;gene=neuB2;inference=protein motif:Prosite:PS00141;locus_tag=Cj1327
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1254672	1254695	.	+	.	ID=id-Cj1327-3;Note=PS00867 Carbamoyl-phosphate synthase subdomain signature 2;gbkey=misc_feature;gene=neuB2;inference=protein motif:Prosite:PS00867;locus_tag=Cj1327
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1254762	1254794	.	+	.	ID=id-Cj1327-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=neuB2;inference=protein motif:Prosite:PS00013;locus_tag=Cj1327
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1254975	1255133	.	+	.	ID=id-Cj1327-5;Note=HMMPfam hit to PF01354%2C Antifreeze-like domain%2Cscore 3.8e-15;gbkey=misc_feature;gene=neuB2;inference=protein motif:Pfam:PF01354;locus_tag=Cj1327
gi|15791399|ref|NC_002163.1|	EMBL	gene	1255129	1256283	.	+	.	ID=gene-Cj1328;Name=neuC2;gbkey=Gene;gene=neuC2;gene_biotype=protein_coding;locus_tag=Cj1328
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1255129	1256283	.	+	0	ID=cds-CAL35441.1;Parent=gene-Cj1328;Dbxref=EnsemblGenomes-Gn:Cj1328,EnsemblGenomes-Tr:CAL35441,GOA:Q0P8T0,InterPro:IPR003331,InterPro:IPR020004,NCBI_GP:CAL35441.1;Name=CAL35441.1;Note=Original (2000) note: Cj1328%2C neuC2%2C probable N-acetylglucosamine-6-phosphate 2-epimerase/N-acetylglucosamine-6-phosphatase%2C len: 371 aa%3B similar to e.g. TR:Q47400 (EMBL:M84026) E. coli neuC (391 aa)%2C fasta scores%3B opt: 779 z-score: 889.7 E(): 0%2C36.1%25 identity in 388 aa overlap%2C and TR:Q57141 (EMBL:X78068) Neisseria meningitidis putative N-acetylglucosamine-6-phosphate 2-epimerase (EC 5.1.3.-) / N-acetylglucosamine-6-phosphatase (EC 3.1.3.-) (377 aa)%2Cfatsta scores%3B opt: 561 z-score: 642.7 E(): 1.7e-28%2C 33.5%25 identity in 391 aa overlap. No Hp match. Also similar to Cj1142 (34.6%25 identity in 384 aa overlap)%3B~Updated (2006) note: Some characterisation work within Campylobacter coli (PMID:8825781%2C PMID:12406231). Product function updated and putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:10712693%2C PMID:16573682%2C PMID:12781527%2CPMID:16481326%2C PMID:12406231%2C PMID:8825781;gbkey=CDS;gene=neuC2;locus_tag=Cj1328;product=putative UDP-N-acetylglucosamine 2-epimerase;protein_id=CAL35441.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1255198	1256232	.	+	.	ID=id-Cj1328;Note=HMMPfam hit to PF02350%2C UDP-N-acetylglucosamine 2-epimerase%2C score 2.9e-153;gbkey=misc_feature;gene=neuC2;inference=protein motif:Pfam:PF02350;locus_tag=Cj1328
gi|15791399|ref|NC_002163.1|	EMBL	gene	1256292	1257317	.	+	.	ID=gene-Cj1329;Name=Cj1329;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1329
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1256292	1257317	.	+	0	ID=cds-CAL35442.1;Parent=gene-Cj1329;Dbxref=EnsemblGenomes-Gn:Cj1329,EnsemblGenomes-Tr:CAL35442,GOA:Q0P8S9,InterPro:IPR000644,InterPro:IPR005835,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P8S9,NCBI_GP:CAL35442.1;Name=CAL35442.1;Note=Original (2000) note: Cj1329%2C probable sugar-phosphate nucleotide transferase%2C len: 341 aa%3B similar in C-term (120 aa - end) to many predicted transferases%2C and to MPG1_YEAST mannose-1-phosphate guanyltransferase (361 aa)%2C fasta scores%3B opt: 304 z-score: 343.2 E(): 8.1e-12%2C 28.9%25 identity in 225 aa overlap. N-term has some similarity to CBS domains in nucleotide dehydrogenases e.g. IMDH_BACSU inosine-5'-monophosphate dehydrogenase (513 aa)%2C blastp scores%3B E%3D0.00034%2C 30%25 identity in 116 overlap. N-term contains 2x Pfam match to entry PF00571 CBS%2C CBS domain%2CC-term contains Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase. No Hp match. Also similar in C-terminus to Cj1423c (35.6%25 identity in 216 aa overlap)%3B~Updated (2006) note: Some characterisation work carried out in Campylobacter coli (PMID:12406231). Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:16573682%2C PMID:12781527%2C PMID:12406231;gbkey=CDS;inference=protein motif:Pfam:PF00571;locus_tag=Cj1329;product=putative sugar-phosphate nucleotide transferase;protein_id=CAL35442.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1256292	1256447	.	+	.	ID=id-Cj1329;Note=HMMPfam hit to PF00571%2C CBS domain%2C score 0.0046;gbkey=misc_feature;inference=protein motif:Pfam:PF00571;locus_tag=Cj1329
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1256478	1256639	.	+	.	ID=id-Cj1329-2;Note=HMMPfam hit to PF00571%2C CBS domain%2C score 8.5e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF00571;locus_tag=Cj1329
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1256649	1257308	.	+	.	ID=id-Cj1329-3;Note=HMMPfam hit to PF00483%2C Nucleotidyl transferase%2Cscore 4.2e-30;gbkey=misc_feature;inference=protein motif:Pfam:PF00483;locus_tag=Cj1329
gi|15791399|ref|NC_002163.1|	EMBL	gene	1257314	1258219	.	+	.	ID=gene-Cj1330;Name=Cj1330;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1330
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1257314	1258219	.	+	0	ID=cds-CAL35443.1;Parent=gene-Cj1330;Dbxref=EnsemblGenomes-Gn:Cj1330,EnsemblGenomes-Tr:CAL35443,GOA:Q0P8S8,InterPro:IPR000683,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P8S8,NCBI_GP:CAL35443.1;Name=CAL35443.1;Note=Original (2000) note: Cj1330%2C unknown%2C len: 301 aa%3B some similarity to predicted oxidoreductases e.g. TR:O26961 (EMBL:AE000863) Methanobacterium thermoautotrophicum MTH875 (predicted 3-chlorobenzoate-3%2C4-dioxygenase dyhydrogenase related protein) (318 aa)%2C fasta scores%3B opt: 199 z-score: 244.0 E(): 2.7e-06%2C 24.7%25 identity in 267 aa overlap%2C and TR:Q53739 (EMBL:X92429) Streptomyces alboniger predicted oxido-reductase (338 aa)%2C fasta scores%3B opt: 135 z-score: 167.8 E(): 0.048%2C 27.0%25 identity in 196 aa overlap. No Hp match%3B~Updated (2006) note: Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Conserved hypothetical proteins%3B~PMID:16573682%2C PMID:12781527;gbkey=CDS;locus_tag=Cj1330;product=hypothetical protein Cj1330;protein_id=CAL35443.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1258212	1258919	.	+	.	ID=gene-Cj1331;Name=ptmB;gbkey=Gene;gene=ptmB;gene_biotype=protein_coding;locus_tag=Cj1331
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1258212	1258919	.	+	0	ID=cds-CAL35444.1;Parent=gene-Cj1331;Dbxref=EnsemblGenomes-Gn:Cj1331,EnsemblGenomes-Tr:CAL35444,GOA:Q0P8S7,InterPro:IPR003329,InterPro:IPR029044,NCBI_GP:CAL35444.1;Name=CAL35444.1;Note=Original (2000) note: Cj1331%2C ptmB%2C neuA3%2C probable acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase)%2C len: 235 aa%3B 83.8%25 identical to PTMB_CAMCO posttranslational flagellin modification protein B (235 aa)%2C and simlar to e.g. NEUA_NEIME acylneuraminate cytidylyltransferase (EC 2.7.7.43) (228 aa)%2C fasta scores%3B opt: 357 z-score: 438.8 E(): 3.8e-17%2C 30.1%25 identity in 226 aa overlap. No Hp ortholog. Also similar to e.g. Cj1311 neuA2 (32.9%25 identity in 234 aa overlap) and Cj1143 neuA (34.7%25 identity in 219 aa overlap)%3B~Updated (2006) note: Pfam domain PF02348 Cytidylyltransferase identified within CDS. Further support given to product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:16573682%2C PMID:12781527%2C PMID:8825781;gbkey=CDS;gene=ptmB;inference=protein motif:Pfam:PF02348;locus_tag=Cj1331;product=acylneuraminate cytidylyltransferase (flagellin modification);protein_id=CAL35444.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1258224	1258841	.	+	.	ID=id-Cj1331;Note=HMMPfam hit to PF02348%2C Cytidylyltransferase%2C score 6.7e-53;gbkey=misc_feature;gene=ptmB;inference=protein motif:Pfam:PF02348;locus_tag=Cj1331
gi|15791399|ref|NC_002163.1|	EMBL	gene	1258919	1259689	.	+	.	ID=gene-Cj1332;Name=ptmA;gbkey=Gene;gene=ptmA;gene_biotype=protein_coding;locus_tag=Cj1332
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1258919	1259689	.	+	0	ID=cds-CAL35445.1;Parent=gene-Cj1332;Dbxref=EnsemblGenomes-Gn:Cj1332,EnsemblGenomes-Tr:CAL35445,GOA:Q0P8S6,InterPro:IPR002198,InterPro:IPR002347,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P8S6,NCBI_GP:CAL35445.1;Name=CAL35445.1;Note=Original (2000) note: Cj1332%2C ptmA%2C probable oxidoreductase%2C len: 256 aa%3B 79.3%25 identical to PTMA_CAMCO posttranslational flagellin modification protein A (256 aa)%2C and similar to e.g. DHG2_BACME glucose 1-dehydrogenase II (261 aa)%2C fasta scores%3B opt: 236 z-score: 281.8 E(): 2.1e-08%2C 24.1%25 identity in 261 aa overlap. No Hp ortholog. Contains fam match to entry PF00106 adh_short%2C Alcohol/other dehydrogenases%2C short chain type%2C and Pfam match to entry PF00678 adh_short_C2%2CShort chain dehydrogenase/reductase C-terminus%3B~Updated (2006) note: Putative kept within product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:16573682%2C PMID:12781527%2C PMID:8825781;gbkey=CDS;gene=ptmA;inference=protein motif:Pfam:PF00678;locus_tag=Cj1332;product=putative oxidoreductase (flagellin modification);protein_id=CAL35445.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1258937	1259680	.	+	.	ID=id-Cj1332;Note=HMMPfam hit to PF00106%2C short chain dehydrogenase%2Cscore 2.9e-15;gbkey=misc_feature;gene=ptmA;inference=protein motif:Pfam:PF00106;locus_tag=Cj1332
gi|15791399|ref|NC_002163.1|	EMBL	gene	1259677	1261638	.	+	.	ID=gene-Cj1333;Name=pseD;gbkey=Gene;gene=pseD;gene_biotype=protein_coding;locus_tag=Cj1333
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1259677	1261638	.	+	0	ID=cds-CAL35446.1;Parent=gene-Cj1333;Dbxref=EnsemblGenomes-Gn:Cj1333,EnsemblGenomes-Tr:CAL35446,InterPro:IPR002826,UniProtKB/TrEMBL:Q0P8S5,NCBI_GP:CAL35446.1;Name=CAL35446.1;Note=Original (2000) note: Cj1333%2C unknown%2C len: 653 aa%3B no Hp ortholog%2C but 34.6%25 identity to HP0114. A member of the 1318 family of proteins. Similar to Cj1318 (72.5%25 identity in 658 aa overlap)%2C Cj1337 (48.6%25 identity in 636 aa overlap)%2C Cj1334 (41.8%25 identity in 644 aa overlap)%2CCj1340c (30.4%25 identity in 615 aa overlap)%2C Cj1341c (31.2%25 identity in 616 aa overlap) and Cj1335/Cj1336 (94.2%25 identity in 52 aa overlap/71.7%25 identity in 597 aa overlap)%3B~Updated (2006) note: Pfam domain PF01973 Protein of unknown function DUF115 identified within CDS. Characterised work has been carried out within Campylobacter jejuni (PMID:16573682) and noted to play a role in attachment of pseudaminic acid. Previously designated at Maf2 (motility accessory protein). Recently shown to play no part in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Logan (Susan.Logan@nrc-cnrc.gc.ca) personal communication. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Misc%3B~PMID:11832511%2C PMID:11895937%2C PMID:16573682%2CPMID:12781527%2C PMID:11895937%2C PMID:16573682;gbkey=CDS;gene=pseD;inference=protein motif:Pfam:PF01973;locus_tag=Cj1333;product=PseD protein;protein_id=CAL35446.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1260313	1260825	.	+	.	ID=id-Cj1333;Note=HMMPfam hit to PF01973%2C Protein of unknown function DUF115%2C score 4.1e-85;gbkey=misc_feature;gene=pseD;inference=protein motif:Pfam:PF01973;locus_tag=Cj1333
gi|15791399|ref|NC_002163.1|	EMBL	gene	1261635	1263494	.	+	.	ID=gene-Cj1334;Name=maf3;gbkey=Gene;gene=maf3;gene_biotype=protein_coding;locus_tag=Cj1334
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1261635	1263494	.	+	0	ID=cds-CAL35447.1;Parent=gene-Cj1334;Dbxref=EnsemblGenomes-Gn:Cj1334,EnsemblGenomes-Tr:CAL35447,InterPro:IPR002826,UniProtKB/TrEMBL:Q0P8S4,NCBI_GP:CAL35447.1;Name=CAL35447.1;Note=Original (2000) note: Cj1334%2C unknown%2C len: 619 aa%3B no Hp ortholog%2C but 34.8%25 identity to HP0114. A member of the 1318 family of proteins. Similar to Cj1333 (41.9%25 identity in 645 aa overlap)%2C Cj1318 (41.0%25 identity in 647 aa overlap)%2C Cj1336 (41.9%25 identity in 590 aa overlap)%2CCj1337 (43.8%25 identity in 628 aa overlap)%2C Cj1341c (34.3%25 identity in 621 aa overlap)%2C and Cj1340c (34.0%25 identity in 618 aa overlap)%3B~Updated (2006) note: Pfam domain PF01973 Protein of unknown function DUF115 identified within CDS. Some characterisation work has been carried out within Campylobacter jejuni. Product funciton updated to more specific family member. Recently shown to play no part in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Misc%3B~PMID:11832511%2C PMID:16573682%2C PMID:12781527%2CPMID:16573682;gbkey=CDS;gene=maf3;inference=protein motif:Pfam:PF01973;locus_tag=Cj1334;product=motility accessory factor (function unknown);protein_id=CAL35447.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1262241	1262753	.	+	.	ID=id-Cj1334;Note=HMMPfam hit to PF01973%2C Protein of unknown function DUF115%2C score 3.1e-83;gbkey=misc_feature;gene=maf3;inference=protein motif:Pfam:PF01973;locus_tag=Cj1334
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1263499	1265456	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1263499..1265456;Note=repeat 3%3B identical to 1246669..1248628 (approx. positions);gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	gene	1263507	1265454	.	+	.	ID=gene-Cj1335;Name=maf4;gbkey=Gene;gene=maf4;gene_biotype=protein_coding;locus_tag=Cj1335
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1263507	1263677	.	+	0	ID=cds-CAL35448.1;Parent=gene-Cj1335;Dbxref=EnsemblGenomes-Gn:Cj1335,EnsemblGenomes-Tr:CAL35448,InterPro:IPR002826,UniProtKB/TrEMBL:Q0P8S3,NCBI_GP:CAL35448.1;Name=CAL35448.1;Note=Original (2000) note: Cj1335%2C unknown%2C len: 60 aa%3B no Hp match. A member of the 1318 family of proteins. Identical to the N-terminus of Cj1318 (100.0%25 identity in 59 aa overlap) and similar to Cj1333 (94.2%25 identity in 52 aa overlap). Contains a G(9-10) polymorphic region at aa 57. G(9) (consensus) gives this ORF%2C G(10) would extend the ORF by 18 aa. G(8) or G(11) (not seen in shotgun) would allow translation into the downstream ORF Cj1336%2Cgiving a protein similar to other members of the 1318 family%3B~Original (2000) note: Cj1336%2C unknown%2C len: 593 aa%3B no Hp ortholog%2C but 34.0%25 identity to HP0114. A member of the 1318 family of proteins. Identical to Cj1318 (except the C-term%2C 100.0%25 identity in 592 aa overlap)%2C ands similar to Cj1333 (71.7%25 identity in 597 aa overlap)%2CCj1334 (42.3%25 identity in 591 aa overlap)%2C Cj1337 (48.6%25 identity in 586 aa overlap)%2C Cj1341c (30.8%25 identity in 578 aa overlap) and Cj1340c (32.0%25 identity in 579 aa overlap). Contains a G(9-10) polymorphic region at aa 2. G(9) (consensus) gives this ORF%2C G(10) would allow translation to start at aa 21. G(8) or G(11) (not seen in shotgun) would allow translation from the upstream ORF Cj1335%2C giving a protein similar to other members of the 1318 family%3B~Updated (2006) note: Pfam domain PF01973 Protein of unknown function DUF115 identified within CDS. Some characterisation work has been carried out within Campylobacter jejuni. Product funciton updated to more specific family member. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj1335 and Cj1336 as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Misc%3B~PMID:11832511%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;gene=maf4;inference=protein motif:Pfam:PF01973;locus_tag=Cj1335;product=motility accessory factor (function unknown);protein_id=CAL35448.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1263676	1265454	.	+	0	ID=cds-CAL35448.1;Parent=gene-Cj1335;Dbxref=EnsemblGenomes-Gn:Cj1335,EnsemblGenomes-Tr:CAL35448,InterPro:IPR002826,UniProtKB/TrEMBL:Q0P8S3,NCBI_GP:CAL35448.1;Name=CAL35448.1;Note=Original (2000) note: Cj1335%2C unknown%2C len: 60 aa%3B no Hp match. A member of the 1318 family of proteins. Identical to the N-terminus of Cj1318 (100.0%25 identity in 59 aa overlap) and similar to Cj1333 (94.2%25 identity in 52 aa overlap). Contains a G(9-10) polymorphic region at aa 57. G(9) (consensus) gives this ORF%2C G(10) would extend the ORF by 18 aa. G(8) or G(11) (not seen in shotgun) would allow translation into the downstream ORF Cj1336%2Cgiving a protein similar to other members of the 1318 family%3B~Original (2000) note: Cj1336%2C unknown%2C len: 593 aa%3B no Hp ortholog%2C but 34.0%25 identity to HP0114. A member of the 1318 family of proteins. Identical to Cj1318 (except the C-term%2C 100.0%25 identity in 592 aa overlap)%2C ands similar to Cj1333 (71.7%25 identity in 597 aa overlap)%2CCj1334 (42.3%25 identity in 591 aa overlap)%2C Cj1337 (48.6%25 identity in 586 aa overlap)%2C Cj1341c (30.8%25 identity in 578 aa overlap) and Cj1340c (32.0%25 identity in 579 aa overlap). Contains a G(9-10) polymorphic region at aa 2. G(9) (consensus) gives this ORF%2C G(10) would allow translation to start at aa 21. G(8) or G(11) (not seen in shotgun) would allow translation from the upstream ORF Cj1335%2C giving a protein similar to other members of the 1318 family%3B~Updated (2006) note: Pfam domain PF01973 Protein of unknown function DUF115 identified within CDS. Some characterisation work has been carried out within Campylobacter jejuni. Product funciton updated to more specific family member. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj1335 and Cj1336 as seperate CDS. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Misc%3B~PMID:11832511%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;gene=maf4;inference=protein motif:Pfam:PF01973;locus_tag=Cj1335;product=motility accessory factor (function unknown);protein_id=CAL35448.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1264156	1264662	.	+	.	ID=id-Cj1335;Note=HMMPfam hit to PF01973%2C Protein of unknown function DUF115%2C score 4.6e-79;gbkey=misc_feature;gene=maf4;inference=protein motif:Pfam:PF01973;locus_tag=Cj1335
gi|15791399|ref|NC_002163.1|	EMBL	gene	1265451	1267337	.	+	.	ID=gene-Cj1337;Name=pseE;gbkey=Gene;gene=pseE;gene_biotype=protein_coding;locus_tag=Cj1337
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1265451	1267337	.	+	0	ID=cds-CAL35449.1;Parent=gene-Cj1337;Dbxref=EnsemblGenomes-Gn:Cj1337,EnsemblGenomes-Tr:CAL35449,InterPro:IPR002826,UniProtKB/TrEMBL:Q0P8S2,NCBI_GP:CAL35449.1;Name=CAL35449.1;Note=Original (2000) note: Cj1337%2C unknown%2C len: 628 aa%3B 35.0%25 identity to HP0114. A member of the 1318 family of proteins. Simlar to Cj1333 (48.6%25 identity in 636 aa overlap)%2C Cj1318 (48.1%25 identity in 643 aa overlap)%2CCj1336 (48.6%25 identity in 586 aa overlap)%2C Cj1334 (43.6%25 identity in 628 aa overlap)%2C Cj1340c (32.2%25 identity in 624 aa overlap)%2C Cj1341c (31.9%25 identity in 627 aa overlap)%3B~Updated (2006) note: Pfam domain PF01973 Protein of unknown function DUF115 identified within CDS. Some characterisation work carried out within Campylobacter jejuni. Product function modified. Recent research has shown that PseE does not play a role in the pseudaminic acid pathway%2C however%2C may be involved in glycan transfer to flagellin (PMID:16684771). Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Misc%3B~PMID:16684771%2C PMID:16573682%2C PMID:12781527%2CPMID:11461915;gbkey=CDS;gene=pseE;inference=protein motif:Pfam:PF01973;locus_tag=Cj1337;product=PseE protein;protein_id=CAL35449.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1266069	1266581	.	+	.	ID=id-Cj1337;Note=HMMPfam hit to PF01973%2C Protein of unknown function DUF115%2C score 9.6e-90;gbkey=misc_feature;gene=pseE;inference=protein motif:Pfam:PF01973;locus_tag=Cj1337
gi|15791399|ref|NC_002163.1|	EMBL	gene	1267368	1269086	.	-	.	ID=gene-Cj1338c;Name=flaB;gbkey=Gene;gene=flaB;gene_biotype=protein_coding;locus_tag=Cj1338c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1267368	1269086	.	-	0	ID=cds-CAL35450.1;Parent=gene-Cj1338c;Dbxref=EnsemblGenomes-Gn:Cj1338c,EnsemblGenomes-Tr:CAL35450,GOA:P56964,InterPro:IPR001029,InterPro:IPR001492,InterPro:IPR010810,NCBI_GP:CAL35450.1;Name=CAL35450.1;Note=Original (2000) note: Cj1338c%2C flaB%2C flagellin B%2Clen: 572 aa%3B 80.9%25 identity to FLAB_CAMJE flagellin B (575 aa)%2C fasta scores%3B opt: 2812 z-score: 2717.5 E(): 0%2C 80.9%25 identity in 575 aa overlap. 52.1%25 identity to HP0115. Also similar to Cj1339c flaA (93.9%25 identity in 572 aa overlap)%2C Cj0887c flaD (21.1%25 identity in 563 aa overlap)%2Cand Cj0720c flaC (25.6%25 identity in 203 aa overlap). Contains fam match to entry PF00669 Flagellin_N%2C Bacterial flagellin N-terminus%2C and Pfam match to entry PF00700 Flagellin_C%2C Bacterial flagellin C-terminus. The flaA and flaB genes have a GC content of 37%25 compared to the overall genome GC content of 30.5%25%3B~Updated (2006) note: Some characterisation work carried out within Campylobacter jejuni. Putative not added to product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:11035721%2C PMID:10974116%2C PMID:16573682%2CPMID:12781527;gbkey=CDS;gene=flaB;inference=protein motif:Pfam:PF00700;locus_tag=Cj1338c;product=flagellin;protein_id=CAL35450.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1267437	1267652	.	-	.	ID=id-Cj1338c;Note=HMMPfam hit to PF00700%2C Bacterial flagellin C-terminus%2C score 6.3e-36;gbkey=misc_feature;gene=flaB;inference=protein motif:Pfam:PF00700;locus_tag=Cj1338c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1268178	1268333	.	-	.	ID=id-Cj1338c-2;Note=HMMPfam hit to PF07196%2C Flagellin hook IN motif%2Cscore 2.2e-10;gbkey=misc_feature;gene=flaB;inference=protein motif:Pfam:PF07196;locus_tag=Cj1338c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1268346	1268528	.	-	.	ID=id-Cj1338c-3;Note=HMMPfam hit to PF07196%2C Flagellin hook IN motif%2Cscore 5.4e-08;gbkey=misc_feature;gene=flaB;inference=protein motif:Pfam:PF07196;locus_tag=Cj1338c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1268577	1269002	.	-	.	ID=id-Cj1338c-4;Note=HMMPfam hit to PF00669%2C Bacterial flagellin N-terminus%2C score 6.6e-69;gbkey=misc_feature;gene=flaB;inference=protein motif:Pfam:PF00669;locus_tag=Cj1338c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1269232	1270950	.	-	.	ID=gene-Cj1339c;Name=flaA;gbkey=Gene;gene=flaA;gene_biotype=protein_coding;locus_tag=Cj1339c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1269232	1270950	.	-	0	ID=cds-CAL35451.1;Parent=gene-Cj1339c;Dbxref=EnsemblGenomes-Gn:Cj1339c,EnsemblGenomes-Tr:CAL35451,GOA:P56963,InterPro:IPR001029,InterPro:IPR001492,InterPro:IPR010810,NCBI_GP:CAL35451.1;Name=CAL35451.1;Note=Original (2000) note: Cj1339c%2C flaA%2C flagellin A%2Clen: 572 aa%3B 80.7%25 identity to FLAA_CAMJE flagellin A (575 aa)%2C fasta scores%3B opt: 2816 z-score: 2717.6 E(): 0%2C 80.7%25 identity in 575 aa overlap. 48.3%25 identity to HP0601. Also similar to Cj1338c (flaA)%2C Cj0720c flaC (24.5%25 identity in 220 aa overlap)%2C and Cj0887c flaD (20.2%25 identity in 560 aa overlap). Contains fam match to entry PF00669 Flagellin_N%2C Bacterial flagellin N-terminus%2C and Pfam match to entry PF00700 Flagellin_C%2C Bacterial flagellin C-terminus. The flaA and flaB genes have a GC content of 37%25 compared to the overall genome GC content of 30.5%25%3B~Updated (2006) note: Some characterisation work carried out within Campylobacter jejuni. Putative not added to product function. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Surface structures%3B~PMID:11035721%2C PMID:10974116%2C PMID:16573682%2CPMID:12781527;gbkey=CDS;gene=flaA;inference=protein motif:Pfam:PF00700;locus_tag=Cj1339c;product=flagellin;protein_id=CAL35451.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1269301	1269516	.	-	.	ID=id-Cj1339c;Note=HMMPfam hit to PF00700%2C Bacterial flagellin C-terminus%2C score 1.5e-36;gbkey=misc_feature;gene=flaA;inference=protein motif:Pfam:PF00700;locus_tag=Cj1339c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1270042	1270197	.	-	.	ID=id-Cj1339c-2;Note=HMMPfam hit to PF07196%2C Flagellin hook IN motif%2Cscore 2.2e-11;gbkey=misc_feature;gene=flaA;inference=protein motif:Pfam:PF07196;locus_tag=Cj1339c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1270210	1270392	.	-	.	ID=id-Cj1339c-3;Note=HMMPfam hit to PF07196%2C Flagellin hook IN motif%2Cscore 3.2e-09;gbkey=misc_feature;gene=flaA;inference=protein motif:Pfam:PF07196;locus_tag=Cj1339c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1270441	1270866	.	-	.	ID=id-Cj1339c-4;Note=HMMPfam hit to PF00669%2C Bacterial flagellin N-terminus%2C score 7.1e-69;gbkey=misc_feature;gene=flaA;inference=protein motif:Pfam:PF00669;locus_tag=Cj1339c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1271047	1272864	.	-	.	ID=gene-Cj1340c;Name=Cj1340c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1340c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1271047	1272864	.	-	0	ID=cds-CAL35452.1;Parent=gene-Cj1340c;Dbxref=EnsemblGenomes-Gn:Cj1340c,EnsemblGenomes-Tr:CAL35452,InterPro:IPR002826,UniProtKB/TrEMBL:Q0P8R9,NCBI_GP:CAL35452.1;Name=CAL35452.1;Note=Original (2000) note: Cj1340c%2C unknown%2C len: 605 aa%3B no Hp ortholog%2C but 28.5%25 identity to HP0114. A member of the 1318 family of proteins. Similar to Cj1341c (83.4%25 identity in 598 aa overlap)%2C Cj1337 (32.5%25 identity in 625 aa overlap)%2C Cj1333 (30.4%25 identity in 615 aa overlap)%2CCj1336 (32.0%25 identity in 579 aa overlap)%2C Cj1318 (31.4%25 identity in 641 aa overlap)%2C and Cj1334 (34.1%25 identity in 618 aa overlap)%3B~Updated (2006) note: Pfam domain PF01973 Protein of unknown function DUF115 identified within CDS. Conserved added to product function. Literature search identified paper giving further clues to product function (PMID:11895937). Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Conserved hypothetical proteins%3B~PMID:11895937%2C PMID:16573682%2C PMID:12781527;gbkey=CDS;inference=protein motif:Pfam:PF01973;locus_tag=Cj1340c;product=conserved hypothetical protein Cj1340c (1318 family);protein_id=CAL35452.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1271755	1272255	.	-	.	ID=id-Cj1340c;Note=HMMPfam hit to PF01973%2C Protein of unknown function DUF115%2C score 8.8e-71;gbkey=misc_feature;inference=protein motif:Pfam:PF01973;locus_tag=Cj1340c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1272861	1274684	.	-	.	ID=gene-Cj1341c;Name=maf6;gbkey=Gene;gene=maf6;gene_biotype=protein_coding;locus_tag=Cj1341c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1272861	1274684	.	-	0	ID=cds-CAL35453.1;Parent=gene-Cj1341c;Dbxref=EnsemblGenomes-Gn:Cj1341c,EnsemblGenomes-Tr:CAL35453,InterPro:IPR002826,UniProtKB/TrEMBL:Q0P8R8,NCBI_GP:CAL35453.1;Name=CAL35453.1;Note=Original (2000) note: Cj1341c%2C unknown%2C len: 607 aa%3B no Hp ortholog%2C but 28.4%25 identity to HP0114. A member of the 1318 family of proteins. Similar to Cj1340c (83.4%25 identity in 598 aa overlap)%2C Cj1334 (34.6%25 identity in 622 aa overlap)%2C Cj1336 (30.8%25 identity in 578 aa overlap)%2CCj1333 (31.2%25 identity in 616 aa overlap)%2C Cj1318 (30.2%25 identity in 640 aa overlap)%2C and Cj1337 (32.0%25 identity in 628 aa overlap)%3B~Updated (2006) note: Pfam domain PF01973 Protein of unknown function DUF115 identified within CDS. Some characterisation work carried out within Campylobacter jejuni. Product modified to more specific family member. Recently shown to play no part in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Misc%3B~PMID:11832511%2C PMID:16573682%2C PMID:12781527%2CPMID:16573682;gbkey=CDS;gene=maf6;inference=protein motif:Pfam:PF01973;locus_tag=Cj1341c;product=motility accessory factor (function unknown);protein_id=CAL35453.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1273584	1274075	.	-	.	ID=id-Cj1341c;Note=HMMPfam hit to PF01973%2C Protein of unknown function DUF115%2C score 9.8e-73;gbkey=misc_feature;gene=maf6;inference=protein motif:Pfam:PF01973;locus_tag=Cj1341c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1274694	1275935	.	-	.	ID=gene-Cj1342c;Name=maf7;gbkey=Gene;gene=maf7;gene_biotype=protein_coding;locus_tag=Cj1342c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1274694	1275935	.	-	0	ID=cds-CAL35454.1;Parent=gene-Cj1342c;Dbxref=EnsemblGenomes-Gn:Cj1342c,EnsemblGenomes-Tr:CAL35454,InterPro:IPR022605,InterPro:IPR029058,UniProtKB/TrEMBL:Q0P8R7,NCBI_GP:CAL35454.1;Name=CAL35454.1;Note=Original (2000) note: Cj1342c%2C unknown%2C len: 413 aa%3B no Hp match. A member of the 617 family of C.j. proteins containing homopolymeric tracts%3B similar to Cj1310c (37.3%25 identity in 424 aa overlap)%2C Cj1305c (38.5%25 identity in 423 aa overlap)%2C Cj0617/Cj0618 (49.7%25 identity in 191 aa overlap/43.4%25 identity in 221 aa overlap)%2CCj1306c (38.3%25 identity in 426 aa overlap). Contains C(9-10) polymorphic region at aa 188. C(9) consensus gives this ORF%2C C(10) gives truncation after a further 19 aa%3B~Updated (2006) note: Some characterisation work carried out within Campylobacter jejuni. Product modified to more specific family member.Recently shown to play no part in CMP-Pse5NAc7NAc or CMP-Pse5NAc7Am pathyways. Identifed as part of Campylobacter jejuni O-linked glycosylation locus (Cj1293 - Cj1342). Functional classification - Misc%3B~PMID:11832511%2C PMID:16573682%2C PMID:12781527%2CPMID:16573682;gbkey=CDS;gene=maf7;locus_tag=Cj1342c;product=motility accessory factor (function unknown);protein_id=CAL35454.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1275935	1276450	.	-	.	ID=gene-Cj1343c;Name=Cj1343c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1343c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1275935	1276450	.	-	0	ID=cds-CAL35455.1;Parent=gene-Cj1343c;Dbxref=EnsemblGenomes-Gn:Cj1343c,EnsemblGenomes-Tr:CAL35455,GOA:Q0P8R6,InterPro:IPR000983,InterPro:IPR012902,UniProtKB/TrEMBL:Q0P8R6,NCBI_GP:CAL35455.1;Name=CAL35455.1;Note=Original (2000) note: Cj1343c%2C probable periplasmic protein%2C len: 171 aa%3B no Hp match. Some similarity to N-terminus of secretion proteins e.g. GSPG_ECOLI putative general secretion pathway protein (145 aa)%2C fasta scores%3B opt: 153 z-score: 192.8 E(): 0.0019%2C 35.6%25 identity in 59 aa overlap. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF07963 Prokaryotic N-terminal methylation motif identified within CDS. Further support given to product function. Literature search identified paper giving further clues to product function. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:12949093;gbkey=CDS;inference=protein motif:Pfam:PF07963;locus_tag=Cj1343c;product=putative periplasmic protein;protein_id=CAL35455.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1276373	1276444	.	-	.	ID=id-Cj1343c;Note=HMMPfam hit to PF07963%2C Prokaryotic N-terminal methylation motif%2C score 1.5e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF07963;locus_tag=Cj1343c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1276373	1276432	.	-	.	ID=id-Cj1343c-2;Note=1 probable transmembrane helix predicted for Cj1343c by TMHMM2.0 at aa 7-26;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1343c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1276451	1277458	.	-	.	ID=gene-Cj1344c;Name=Cj1344c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1344c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1276451	1277458	.	-	0	ID=cds-CAL35456.1;Parent=gene-Cj1344c;Dbxref=EnsemblGenomes-Gn:Cj1344c,EnsemblGenomes-Tr:CAL35456,GOA:Q0P8R5,InterPro:IPR000905,InterPro:IPR017860,InterPro:IPR017861,InterPro:IPR022450,NCBI_GP:CAL35456.1;Name=CAL35456.1;Note=Original (2000) note: Cj1344c%2C probable glycoprotease%2C len: 335 aa%3B simlar to e.g. GCP_PASHA O-sialoglycoprotein endopeptidase (325 aa)%2C fasta scores%3B opt: 626 z-score: 743.4 E(): 0%2C 36.2%25 identity in 312 aa overlap. 51.9%25 identity to HP1584. Contains PS01016 Glycoprotease family signature%2C and Pfam match to entry PF00814 Glycoprotease%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Degradation of macromolecules - Proteins%2C peptides and glycopeptides;gbkey=CDS;inference=protein motif:Prosite:PS01016;locus_tag=Cj1344c;product=putative glycoprotease;protein_id=CAL35456.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1277087	1277332	.	-	.	ID=id-Cj1344c;Note=HMMPfam hit to PF00814%2C Glycoprotease family%2C score 2.3e-19;gbkey=misc_feature;inference=protein motif:Pfam:PF00814;locus_tag=Cj1344c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1277114	1277176	.	-	.	ID=id-Cj1344c-2;Note=PS01016 Glycoprotease family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01016;locus_tag=Cj1344c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1277455	1278849	.	-	.	ID=gene-Cj1345c;Name=Cj1345c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1345c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1277455	1278849	.	-	0	ID=cds-CAL35457.1;Parent=gene-Cj1345c;Dbxref=EnsemblGenomes-Gn:Cj1345c,EnsemblGenomes-Tr:CAL35457,UniProtKB/TrEMBL:Q0P8R4,NCBI_GP:CAL35457.1;Name=CAL35457.1;Note=Original (2000) note: Cj1345c%2C probable periplasmic protein%2C len: 464 aa%3B 41.2%25 identity to HP1075. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Paper identified linking protein to glycoprotein. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:12186869;gbkey=CDS;locus_tag=Cj1345c;product=putative periplasmic protein;protein_id=CAL35457.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1278851	1279921	.	-	.	ID=gene-Cj1346c;Name=Cj1346c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1346c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1278851	1279921	.	-	0	ID=cds-CAL35458.1;Parent=gene-Cj1346c;Dbxref=EnsemblGenomes-Gn:Cj1346c,EnsemblGenomes-Tr:CAL35458,GOA:Q9PMV3,InterPro:IPR003821,InterPro:IPR013512,InterPro:IPR013644,InterPro:IPR016040,InterPro:IPR026877,NCBI_GP:CAL35458.1;Name=CAL35458.1;Note=Original (2000) note: Cj1346c%2C dxr%2C probable 1-deoxy-D-xylulose 5-phosphate reductoisomerase%2C len: 356 aa%3B similar to e.g. DXR_BACSU 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC 1.1.1.-) (388 aa)%2C fasta scores%3B opt: 610 z-score: 706.2 E(): 4.9e-32%2C 40.4%25 identity in 349 aa overlap. 46.2%25 identity to HP0216%3B~Updated (2006) note: Pfam domain PF02670 1-deoxy-D-xylulose 5-phosphate reductase identified within CDS. Prosite domain PS00430 TONB_DEPENDENT_REC_1%2C TonB box%2C N-terminal identified within CDS. Further support given to product function. Characterisation work carried out within Escherichia coli. This work along with motif identification has led to putative being removed from product function. Functional classification - Central intermediary metabolism - General%3B~PMID:15567415%2C PMID:10787409;gbkey=CDS;inference=protein motif:Prosite:PS00430;locus_tag=Cj1346c;product=1-deoxy-D-xylulose 5-phosphate reductoisomerase;protein_id=CAL35458.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1278860	1279921	.	-	.	ID=id-Cj1346c;Note=HMMPfam hit to PF02670%2C 1-deoxy-D-xylulose 5-phosphate reduct%2C score 5.7e-116;gbkey=misc_feature;inference=protein motif:Pfam:PF02670;locus_tag=Cj1346c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1279562	1279921	.	-	.	ID=id-Cj1346c-2;Note=PS00430 TonB-dependent receptor proteins signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00430;locus_tag=Cj1346c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1279918	1280643	.	-	.	ID=gene-Cj1347c;Name=cdsA;gbkey=Gene;gene=cdsA;gene_biotype=protein_coding;locus_tag=Cj1347c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1279918	1280643	.	-	0	ID=cds-CAL35459.1;Parent=gene-Cj1347c;Dbxref=EnsemblGenomes-Gn:Cj1347c,EnsemblGenomes-Tr:CAL35459,GOA:Q0P8R2,InterPro:IPR000374,UniProtKB/TrEMBL:Q0P8R2,NCBI_GP:CAL35459.1;Name=CAL35459.1;Note=Original (2000) note: Cj1347c%2C cdsA%2C probable phosphatidate cytidylyltransferase%2C len: 241 aa%3B similar to e.g. CDSA_ECOLI phosphatidate cytidylyltransferase (EC 2.7.7.41) (249 aa)%2C fasta scores%3B opt: 381 z-score: 465.5 E(): 1.2e-18%2C 40.7%25 identity in 182 aa overlap. 39.3%25 identity to HP0215. Contains PS01315 Phosphatidate cytidylyltransferase signature%2C and Pfam match to entry PF01148 Cytidylyltrans%2C Phosphatidate cytidylyltransferase%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Seven probable transmembrane helices predicted by TMHMM2.0. Functional classification - Fatty acid biosynthesis%3B~PMID:9083091%2C PMID:2995359;gbkey=CDS;gene=cdsA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1347c;product=phosphatidate cytidylyltransferase;protein_id=CAL35459.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1280032	1280091	.	-	.	ID=id-Cj1347c;Note=7 probable transmembrane helices predicted for Cj1347c by TMHMM2.0 at aa 10-41%2C 48-67%2C 71-88%2C 95-114%2C119-138%2C 159-181 and 185-204;gbkey=misc_feature;gene=cdsA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1347c;part=1/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1280101	1280169	.	-	.	ID=id-Cj1347c;Note=7 probable transmembrane helices predicted for Cj1347c by TMHMM2.0 at aa 10-41%2C 48-67%2C 71-88%2C 95-114%2C119-138%2C 159-181 and 185-204;gbkey=misc_feature;gene=cdsA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1347c;part=2/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1280230	1280289	.	-	.	ID=id-Cj1347c;Note=7 probable transmembrane helices predicted for Cj1347c by TMHMM2.0 at aa 10-41%2C 48-67%2C 71-88%2C 95-114%2C119-138%2C 159-181 and 185-204;gbkey=misc_feature;gene=cdsA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1347c;part=3/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1280302	1280361	.	-	.	ID=id-Cj1347c;Note=7 probable transmembrane helices predicted for Cj1347c by TMHMM2.0 at aa 10-41%2C 48-67%2C 71-88%2C 95-114%2C119-138%2C 159-181 and 185-204;gbkey=misc_feature;gene=cdsA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1347c;part=4/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1280380	1280433	.	-	.	ID=id-Cj1347c;Note=7 probable transmembrane helices predicted for Cj1347c by TMHMM2.0 at aa 10-41%2C 48-67%2C 71-88%2C 95-114%2C119-138%2C 159-181 and 185-204;gbkey=misc_feature;gene=cdsA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1347c;part=5/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1280443	1280502	.	-	.	ID=id-Cj1347c;Note=7 probable transmembrane helices predicted for Cj1347c by TMHMM2.0 at aa 10-41%2C 48-67%2C 71-88%2C 95-114%2C119-138%2C 159-181 and 185-204;gbkey=misc_feature;gene=cdsA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1347c;part=6/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1280521	1280616	.	-	.	ID=id-Cj1347c;Note=7 probable transmembrane helices predicted for Cj1347c by TMHMM2.0 at aa 10-41%2C 48-67%2C 71-88%2C 95-114%2C119-138%2C 159-181 and 185-204;gbkey=misc_feature;gene=cdsA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1347c;part=7/7
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1279921	1280634	.	-	.	ID=id-Cj1347c-2;Note=HMMPfam hit to PF01148%2C Cytidylyltransferase family%2C score 7.5e-79;gbkey=misc_feature;gene=cdsA;inference=protein motif:Pfam:PF01148;locus_tag=Cj1347c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1279960	1280040	.	-	.	ID=id-Cj1347c-3;Note=PS01315 Phosphatidate cytidylyltransferase signature;gbkey=misc_feature;gene=cdsA;inference=protein motif:Prosite:PS01315;locus_tag=Cj1347c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1280251	1280283	.	-	.	ID=id-Cj1347c-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=cdsA;inference=protein motif:Prosite:PS00013;locus_tag=Cj1347c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1280652	1280990	.	-	.	ID=gene-Cj1348c;Name=Cj1348c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1348c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1280652	1280990	.	-	0	ID=cds-CAL35460.1;Parent=gene-Cj1348c;Dbxref=EnsemblGenomes-Gn:Cj1348c,EnsemblGenomes-Tr:CAL35460,UniProtKB/TrEMBL:Q0P8R1,NCBI_GP:CAL35460.1;Name=CAL35460.1;Note=Original (2000) note: Cj1348c%2C probable coiled-coil protein%2C len: 112 aa%3B Lys-%2C Glu-rich%2C highly hydrophilic%2Ccontains probable coiled-coil from approx aa 50-80. No Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj1348c;product=putative coiled-coil protein;protein_id=CAL35460.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1280992	1282299	.	-	.	ID=gene-Cj1349c;Name=Cj1349c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1349c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1280992	1282299	.	-	0	ID=cds-CAL35461.1;Parent=gene-Cj1349c;Dbxref=EnsemblGenomes-Gn:Cj1349c,EnsemblGenomes-Tr:CAL35461,InterPro:IPR008532,UniProtKB/TrEMBL:Q0P8R0,NCBI_GP:CAL35461.1;Name=CAL35461.1;Note=Original (2000) note: Cj1349c%2C possible fibronectin/fibrinogen-binding protein%2C len: aa%3B similar to TR:Q54858 (EMBL:L28919) Streptococcus pyogenes fibronectin/fibrinogen-binding protein FBP54 (474 aa)%2Cfasta scores%3B opt: 213 z-score: 230.0 E(): 1.7e-05%2C 23.2%25 identity in 466 aa overlap. 30.6%25 identity to HP1392%3B~Updated (2006) note: Pfam domain PF05670 Domain of unknown function (DUF814) identified within CDS. No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Functional classification - Pathogenicity;gbkey=CDS;inference=protein motif:Pfam:PF05670;locus_tag=Cj1349c;product=putative fibronectin/fibrinogen-binding protein;protein_id=CAL35461.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1281052	1281312	.	-	.	ID=id-Cj1349c;Note=HMMPfam hit to PF05670%2C Domain of unknown function (DUF814)%2C score 1.5e-35;gbkey=misc_feature;inference=protein motif:Pfam:PF05670;locus_tag=Cj1349c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1282361	1282936	.	+	.	ID=gene-Cj1350;Name=mobA;gbkey=Gene;gene=mobA;gene_biotype=protein_coding;locus_tag=Cj1350
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1282361	1282936	.	+	0	ID=cds-CAL35462.1;Parent=gene-Cj1350;Dbxref=EnsemblGenomes-Gn:Cj1350,EnsemblGenomes-Tr:CAL35462,GOA:Q9PMU9,InterPro:IPR013482,InterPro:IPR025877,InterPro:IPR029044,NCBI_GP:CAL35462.1;Name=CAL35462.1;Note=Original (2000) note: Cj1350%2C mobA%2C probable molybdopterin-guanine dinucleotide biosynthesis protein%2Clen: 191 aa%3B similar to e.g. MOBA_ECOLI molybdopterin-guanine dinucleotide biosynthesis protein A (194 aa)%2C fasta scores%3B opt: 194 z-score: 249.0 E(): 1.5e-06%2C 22.9%25 identity in 192 aa overlap. 26.6%25 identity to HP0769%3B~Updated (2006) note: Some characterisation in Escherichia coli%2C however%2C identity score was unacceptable. Thus%2C putative kept within product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Molybdopterin%3B~PMID:10978347;gbkey=CDS;gene=mobA;locus_tag=Cj1350;product=putative molybdopterin-guanine dinucleotide biosynthesis protein;protein_id=CAL35462.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1282933	1283922	.	+	.	ID=gene-Cj1351;Name=pldA;gbkey=Gene;gene=pldA;gene_biotype=protein_coding;locus_tag=Cj1351
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1282933	1283922	.	+	0	ID=cds-CAL35463.1;Parent=gene-Cj1351;Dbxref=EnsemblGenomes-Gn:Cj1351,EnsemblGenomes-Tr:CAL35463,GOA:Q0P8Q8,InterPro:IPR003187,UniProtKB/TrEMBL:Q0P8Q8,NCBI_GP:CAL35463.1;Name=CAL35463.1;Note=Original (2000) note: Cj1351%2C pldA%2C probable phospholipase A%2C len: 329 aa%3B highly similar to TR:O32349 (EMBL:Y11031) Campylobacter coli phospholipase A (297 aa)%2Cfasta scores%3B opt: 1544 z-score: 1835.1 E(): 0%2C 75.2%25 identity in 298 aa overlap%2C and similar to e.g. PA1_ECOLI phospholipase A1 precursor (EC 3.1.1.32) (289 aa)%2C fasta scores%3B opt: 467 z-score: 560.5 E(): 6.4e-24%2C 34.7%25 identity in 262 aa overlap. 25.5%25 identity to HP0499. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF02253 Phospholipase A1 identified within CDS. Further support given to product function. Characterised within Campylobacter coli%2C so putative not added to product function (PMID:9119448). Functional classification -Pathogenicity%3B~PMID:9119448%2C PMID:8300539;gbkey=CDS;gene=pldA;inference=protein motif:Pfam:PF02253;locus_tag=Cj1351;product=phospholipase A;protein_id=CAL35463.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1283128	1283916	.	+	.	ID=id-Cj1351;Note=HMMPfam hit to PF02253%2C Phospholipase A1%2C score 4.1e-135;gbkey=misc_feature;gene=pldA;inference=protein motif:Pfam:PF02253;locus_tag=Cj1351
gi|15791399|ref|NC_002163.1|	EMBL	gene	1284008	1284976	.	+	.	ID=gene-Cj1352;Name=ceuB;gbkey=Gene;gene=ceuB;gene_biotype=protein_coding;locus_tag=Cj1352
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1284008	1284976	.	+	0	ID=cds-CAL35464.1;Parent=gene-Cj1352;Dbxref=EnsemblGenomes-Gn:Cj1352,EnsemblGenomes-Tr:CAL35464,GOA:Q0P8Q7,InterPro:IPR000522,InterPro:IPR029022,UniProtKB/TrEMBL:Q0P8Q7,NCBI_GP:CAL35464.1;Name=CAL35464.1;Note=Original (2000) note: Cj1352%2C ceuB%2C probable enterochelin uptake permease%2C len: 322 aa%3B highly similar to TR:Q46003 (EMBL:X88849) Campylobacter coli ceuB (322 aa)%2C fasta scores%3B opt: 1839 z-score: 2038.7 E(): 0%2C 89.1%25 identity in 322 aa overlap%2C and similar to e.g. FATD_VIBAN ferric anguibactin transport system permease protein FATD (314 aa)%2C fasta scores%3B opt: 921 z-score: 1026.8 E(): 0%2C43.3%25 identity in 305 aa overlap. Also similar to Cj1615 (31.0%25 identity in 326 aa overlap)%2C and Cj1353 (27.2%25 identity in 316 aa overlap). Contains Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Campylobacter coli%2Cso putative not added to product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:8574410;gbkey=CDS;gene=ceuB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1352;product=enterochelin uptake permease;protein_id=CAL35464.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284038	1284106	.	+	.	ID=id-Cj1352;Note=9 probable transmembrane helices predicted for Cj1352 by TMHMM2.0 at aa 11-33%2C 54-76%2C 96-125%2C 138-160%2C180-202%2C 214-236%2C 241-263%2C 270-292 and 297-316;gbkey=misc_feature;gene=ceuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1352;part=1/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284167	1284235	.	+	.	ID=id-Cj1352;Note=9 probable transmembrane helices predicted for Cj1352 by TMHMM2.0 at aa 11-33%2C 54-76%2C 96-125%2C 138-160%2C180-202%2C 214-236%2C 241-263%2C 270-292 and 297-316;gbkey=misc_feature;gene=ceuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1352;part=2/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284293	1284382	.	+	.	ID=id-Cj1352;Note=9 probable transmembrane helices predicted for Cj1352 by TMHMM2.0 at aa 11-33%2C 54-76%2C 96-125%2C 138-160%2C180-202%2C 214-236%2C 241-263%2C 270-292 and 297-316;gbkey=misc_feature;gene=ceuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1352;part=3/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284419	1284487	.	+	.	ID=id-Cj1352;Note=9 probable transmembrane helices predicted for Cj1352 by TMHMM2.0 at aa 11-33%2C 54-76%2C 96-125%2C 138-160%2C180-202%2C 214-236%2C 241-263%2C 270-292 and 297-316;gbkey=misc_feature;gene=ceuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1352;part=4/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284545	1284613	.	+	.	ID=id-Cj1352;Note=9 probable transmembrane helices predicted for Cj1352 by TMHMM2.0 at aa 11-33%2C 54-76%2C 96-125%2C 138-160%2C180-202%2C 214-236%2C 241-263%2C 270-292 and 297-316;gbkey=misc_feature;gene=ceuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1352;part=5/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284647	1284715	.	+	.	ID=id-Cj1352;Note=9 probable transmembrane helices predicted for Cj1352 by TMHMM2.0 at aa 11-33%2C 54-76%2C 96-125%2C 138-160%2C180-202%2C 214-236%2C 241-263%2C 270-292 and 297-316;gbkey=misc_feature;gene=ceuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1352;part=6/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284728	1284796	.	+	.	ID=id-Cj1352;Note=9 probable transmembrane helices predicted for Cj1352 by TMHMM2.0 at aa 11-33%2C 54-76%2C 96-125%2C 138-160%2C180-202%2C 214-236%2C 241-263%2C 270-292 and 297-316;gbkey=misc_feature;gene=ceuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1352;part=7/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284815	1284883	.	+	.	ID=id-Cj1352;Note=9 probable transmembrane helices predicted for Cj1352 by TMHMM2.0 at aa 11-33%2C 54-76%2C 96-125%2C 138-160%2C180-202%2C 214-236%2C 241-263%2C 270-292 and 297-316;gbkey=misc_feature;gene=ceuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1352;part=8/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284896	1284955	.	+	.	ID=id-Cj1352;Note=9 probable transmembrane helices predicted for Cj1352 by TMHMM2.0 at aa 11-33%2C 54-76%2C 96-125%2C 138-160%2C180-202%2C 214-236%2C 241-263%2C 270-292 and 297-316;gbkey=misc_feature;gene=ceuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1352;part=9/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284086	1284958	.	+	.	ID=id-Cj1352-2;Note=HMMPfam hit to PF01032%2C FecCD transport family%2Cscore 1.7e-49;gbkey=misc_feature;gene=ceuB;inference=protein motif:Pfam:PF01032;locus_tag=Cj1352
gi|15791399|ref|NC_002163.1|	EMBL	gene	1284969	1285907	.	+	.	ID=gene-Cj1353;Name=ceuC;gbkey=Gene;gene=ceuC;gene_biotype=protein_coding;locus_tag=Cj1353
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1284969	1285907	.	+	0	ID=cds-CAL35465.1;Parent=gene-Cj1353;Dbxref=EnsemblGenomes-Gn:Cj1353,EnsemblGenomes-Tr:CAL35465,GOA:Q0P8Q6,InterPro:IPR000522,InterPro:IPR029022,UniProtKB/TrEMBL:Q0P8Q6,NCBI_GP:CAL35465.1;Name=CAL35465.1;Note=Original (2000) note: Cj1353%2C ceuC%2C probable enterochelin uptake permease%2C len: 312 aa%3B highly similar to TR:Q46004 (EMBL:X88849) Campylobacter coli ceuC (312 aa)%2C fasta scores%3B opt: 1784 z-score: 2112.8 E(): 0%2C 88.8%25 identity in 312 aa overlap%2C and similar to e.g. FATC_VIBAN ferric anguibactin transport system permease protein FATC (317 aa)%2C fasta scores%3B opt: 593 z-score: 708.6 E(): 3.6e-32%2C 31.7%25 identity in 306 aa overlap. No Hp ortholog. Also similar to e.g. Cj1352 (27.2%25 identity in 316 aa overlap)%2C and Cj1615 (27.5%25 identity in 298 aa overlap). Contains Pfam match to entry PF01032 FecCD_family%2C FecCD transport family%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Campylobacter coli%2Cso putative not added to product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:8574410;gbkey=CDS;gene=ceuC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1353;product=enterochelin uptake permease;protein_id=CAL35465.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284981	1285049	.	+	.	ID=id-Cj1353;Note=9 probable transmembrane helices predicted for Cj1353 by TMHMM2.0 at aa 5-27%2C 37-59%2C 64-86%2C 101-120%2C125-147%2C 170-192%2C 222-244%2C 259-281 and 288-307;gbkey=misc_feature;gene=ceuC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1353;part=1/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1285077	1285145	.	+	.	ID=id-Cj1353;Note=9 probable transmembrane helices predicted for Cj1353 by TMHMM2.0 at aa 5-27%2C 37-59%2C 64-86%2C 101-120%2C125-147%2C 170-192%2C 222-244%2C 259-281 and 288-307;gbkey=misc_feature;gene=ceuC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1353;part=2/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1285158	1285226	.	+	.	ID=id-Cj1353;Note=9 probable transmembrane helices predicted for Cj1353 by TMHMM2.0 at aa 5-27%2C 37-59%2C 64-86%2C 101-120%2C125-147%2C 170-192%2C 222-244%2C 259-281 and 288-307;gbkey=misc_feature;gene=ceuC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1353;part=3/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1285269	1285328	.	+	.	ID=id-Cj1353;Note=9 probable transmembrane helices predicted for Cj1353 by TMHMM2.0 at aa 5-27%2C 37-59%2C 64-86%2C 101-120%2C125-147%2C 170-192%2C 222-244%2C 259-281 and 288-307;gbkey=misc_feature;gene=ceuC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1353;part=4/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1285341	1285409	.	+	.	ID=id-Cj1353;Note=9 probable transmembrane helices predicted for Cj1353 by TMHMM2.0 at aa 5-27%2C 37-59%2C 64-86%2C 101-120%2C125-147%2C 170-192%2C 222-244%2C 259-281 and 288-307;gbkey=misc_feature;gene=ceuC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1353;part=5/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1285476	1285544	.	+	.	ID=id-Cj1353;Note=9 probable transmembrane helices predicted for Cj1353 by TMHMM2.0 at aa 5-27%2C 37-59%2C 64-86%2C 101-120%2C125-147%2C 170-192%2C 222-244%2C 259-281 and 288-307;gbkey=misc_feature;gene=ceuC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1353;part=6/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1285632	1285700	.	+	.	ID=id-Cj1353;Note=9 probable transmembrane helices predicted for Cj1353 by TMHMM2.0 at aa 5-27%2C 37-59%2C 64-86%2C 101-120%2C125-147%2C 170-192%2C 222-244%2C 259-281 and 288-307;gbkey=misc_feature;gene=ceuC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1353;part=7/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1285743	1285811	.	+	.	ID=id-Cj1353;Note=9 probable transmembrane helices predicted for Cj1353 by TMHMM2.0 at aa 5-27%2C 37-59%2C 64-86%2C 101-120%2C125-147%2C 170-192%2C 222-244%2C 259-281 and 288-307;gbkey=misc_feature;gene=ceuC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1353;part=8/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1285830	1285889	.	+	.	ID=id-Cj1353;Note=9 probable transmembrane helices predicted for Cj1353 by TMHMM2.0 at aa 5-27%2C 37-59%2C 64-86%2C 101-120%2C125-147%2C 170-192%2C 222-244%2C 259-281 and 288-307;gbkey=misc_feature;gene=ceuC;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1353;part=9/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1284993	1285892	.	+	.	ID=id-Cj1353-2;Note=HMMPfam hit to PF01032%2C FecCD transport family%2Cscore 3.3e-17;gbkey=misc_feature;gene=ceuC;inference=protein motif:Pfam:PF01032;locus_tag=Cj1353
gi|15791399|ref|NC_002163.1|	EMBL	gene	1285904	1286659	.	+	.	ID=gene-Cj1354;Name=ceuD;gbkey=Gene;gene=ceuD;gene_biotype=protein_coding;locus_tag=Cj1354
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1285904	1286659	.	+	0	ID=cds-CAL35466.1;Parent=gene-Cj1354;Dbxref=EnsemblGenomes-Gn:Cj1354,EnsemblGenomes-Tr:CAL35466,GOA:Q0P8Q5,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P8Q5,NCBI_GP:CAL35466.1;Name=CAL35466.1;Note=Original (2000) note: Cj1354%2C ceuD%2C probable enterochelin uptake ATP-binding protein%2C len: 251 aa%3B highly similar to TR:Q46005 (EMBL:X88849) Campylobacter coli ceuD (251 aa)%2C fasta scores%3B opt: 1258 z-score: 1347.9 E(): 0%2C 82.5%25 identity in 246 aa overlap%2C and similar to e.g. FHUC_BACSU ferrichrome transport ATP-binding protein (269 aa)%2C fasta scores%3B opt: 613 z-score: 663.4 E(): 1.2e-29%2C 38.0%25 identity in 245 aa overlap. No Hp ortholog. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Characterised within Campylobacter coli%2C so putative not added to product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:8574410;gbkey=CDS;gene=ceuD;inference=protein motif:Prosite:PS00211;locus_tag=Cj1354;product=enterochelin uptake ATP-binding protein;protein_id=CAL35466.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1285982	1286539	.	+	.	ID=id-Cj1354;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 9.3e-49;gbkey=misc_feature;gene=ceuD;inference=protein motif:Pfam:PF00005;locus_tag=Cj1354
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1286003	1286026	.	+	.	ID=id-Cj1354-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ceuD;inference=protein motif:Prosite:PS00017;locus_tag=Cj1354
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1286309	1286353	.	+	.	ID=id-Cj1354-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=ceuD;inference=protein motif:Prosite:PS00211;locus_tag=Cj1354
gi|15791399|ref|NC_002163.1|	EMBL	gene	1286672	1287664	.	+	.	ID=gene-Cj1355;Name=ceuE;gbkey=Gene;gene=ceuE;gene_biotype=protein_coding;locus_tag=Cj1355
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1286672	1287664	.	+	0	ID=cds-CAL35467.1;Parent=gene-Cj1355;Dbxref=EnsemblGenomes-Gn:Cj1355,EnsemblGenomes-Tr:CAL35467,GOA:Q0P8Q4,InterPro:IPR002491,PDB:2CHU,PDB:3ZK3,PDB:3ZKW,UniProtKB/TrEMBL:Q0P8Q4,NCBI_GP:CAL35467.1;Name=CAL35467.1;Note=Original (2000) note: Cj1355%2C ceuE%2C probable enterochelin uptake periplasmic binding protein%2C len: 330 aa%3B highly similar to TR:Q46006 (EMBL:X88849) Campylobacter coli ceuE (328 aa)%2C fasta scores%3B opt: 1903 z-score: 2111.3 E(): 0%2C 90.6%25 identity in 330 aa overlap%2Cand similar to e.g. FATB_VIBAN ferric anguibactin-binding protein precursor (322 aa)%2C fasta scores%3B opt: 540 z-score: 605.4 E(): 2e-26%2C 30.1%25 identity in 279 aa overlap. No Hp match. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%3B~Updated (2006) note: Characterised within Campylobacter coli%2C so putative not added to product function. Pfam domain PF01497 Periplasmic binding protein identified within CDS. Further support given to product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:8574410;gbkey=CDS;gene=ceuE;inference=protein motif:Prosite:PS00013;locus_tag=Cj1355;product=enterochelin uptake periplasmic binding protein;protein_id=CAL35467.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1286702	1286734	.	+	.	ID=id-Cj1355;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=ceuE;inference=protein motif:Prosite:PS00013;locus_tag=Cj1355
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1286879	1287589	.	+	.	ID=id-Cj1355-2;Note=HMMPfam hit to PF01497%2C Periplasmic binding protein%2C score 1.2e-72;gbkey=misc_feature;gene=ceuE;inference=protein motif:Pfam:PF01497;locus_tag=Cj1355
gi|15791399|ref|NC_002163.1|	EMBL	gene	1287737	1287826	.	-	.	ID=gene-tRNA-Ser;Name=tRNA-Ser;gbkey=Gene;gene=tRNA-Ser;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1287737	1287826	.	-	.	ID=rna-tRNA-Ser;Parent=gene-tRNA-Ser;Note=tRNA Ser anticodon GCT%2C Cove score 68.31;gbkey=tRNA;gene=tRNA-Ser;product=tRNA-Ser
gi|15791399|ref|NC_002163.1|	EMBL	exon	1287737	1287826	.	-	.	ID=exon-tRNA-Ser-1;Parent=rna-tRNA-Ser;Note=tRNA Ser anticodon GCT%2C Cove score 68.31;gbkey=tRNA;gene=tRNA-Ser;product=tRNA-Ser
gi|15791399|ref|NC_002163.1|	EMBL	gene	1287890	1288444	.	-	.	ID=gene-Cj1356c;Name=Cj1356c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1356c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1287890	1288444	.	-	0	ID=cds-CAL35468.1;Parent=gene-Cj1356c;Dbxref=EnsemblGenomes-Gn:Cj1356c,EnsemblGenomes-Tr:CAL35468,UniProtKB/TrEMBL:Q0P8Q3,NCBI_GP:CAL35468.1;Name=CAL35468.1;Note=Original (2000) note: Cj1356c%2C probable integral membrane protein%2C len: 184 aa%3B highly similar to TR:Q46007 (EMBL:X88849) Campylobacter coli ORF (210 aa)%2C fasta scores%3B opt: 545 z-score: 652.8 E(): 4.6e-29%2C 67.1%25 identity in 210 aa overlap. 31.8%25 identity to HP0234%3B~Updated (2006) note: Three probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1356c;product=putative integral membrane protein;protein_id=CAL35468.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1287896	1287949	.	-	.	ID=id-Cj1356c;Note=3 probable transmembrane helices predicted for Cj1356c by TMHMM2.0 at aa 13-35%2C 131-153 and 166-183;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1356c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1287986	1288054	.	-	.	ID=id-Cj1356c;Note=3 probable transmembrane helices predicted for Cj1356c by TMHMM2.0 at aa 13-35%2C 131-153 and 166-183;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1356c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1288340	1288408	.	-	.	ID=id-Cj1356c;Note=3 probable transmembrane helices predicted for Cj1356c by TMHMM2.0 at aa 13-35%2C 131-153 and 166-183;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1356c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	gene	1288580	1290412	.	-	.	ID=gene-Cj1357c;Name=nrfA;gbkey=Gene;gene=nrfA;gene_biotype=protein_coding;locus_tag=Cj1357c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1288580	1290412	.	-	0	ID=cds-CAL35469.1;Parent=gene-Cj1357c;Dbxref=EnsemblGenomes-Gn:Cj1357c,EnsemblGenomes-Tr:CAL35469,GOA:Q0P8Q2,InterPro:IPR003321,InterPro:IPR011031,UniProtKB/TrEMBL:Q0P8Q2,NCBI_GP:CAL35469.1;Name=CAL35469.1;Note=Original (2000) note: Cj1357c%2C probable periplasmic cytochrome C%2C len: 610 aa%3B similar to e.g. NRFA_ECOLI cytochrome C552 precursor (478 aa)%2C fasta scores%3B opt: 298 z-score: 333.9 E(): 2.7e-11%2C 31.0%25 identity in 455 aa overlap. No Hp match. Contains probable N-terminal signal sequence and 5x PS00190 Cytochrome c family heme-binding site signature%3B~Updated (2006) note: Pfam domain PF02335 Cytochrome c552 was identified within CDS. Further support given to product function. Characterisation work carried out within Wolinella succinogenes (PMID:10672190%2C PMID:10984487). Identity score was marginal. Putative kept within product function. Functional classification - Energy metabolism -Electron transport%3B~PMID:10672190%2C PMID:10984487%2C PMID:12095623%2CPMID:12618466;gbkey=CDS;gene=nrfA;inference=protein motif:Prosite:PS00190;locus_tag=Cj1357c;product=putative periplasmic cytochrome C;protein_id=CAL35469.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1288634	1290307	.	-	.	ID=id-Cj1357c;Note=HMMPfam hit to PF02335%2C Cytochrome c552%2C score 1.9e-15;gbkey=misc_feature;gene=nrfA;inference=protein motif:Pfam:PF02335;locus_tag=Cj1357c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1289153	1289170	.	-	.	ID=id-Cj1357c-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=nrfA;inference=protein motif:Prosite:PS00190;locus_tag=Cj1357c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1289246	1289263	.	-	.	ID=id-Cj1357c-3;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=nrfA;inference=protein motif:Prosite:PS00190;locus_tag=Cj1357c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1289624	1289641	.	-	.	ID=id-Cj1357c-4;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=nrfA;inference=protein motif:Prosite:PS00190;locus_tag=Cj1357c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1289765	1289782	.	-	.	ID=id-Cj1357c-5;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=nrfA;inference=protein motif:Prosite:PS00190;locus_tag=Cj1357c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1289948	1289965	.	-	.	ID=id-Cj1357c-6;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=nrfA;inference=protein motif:Prosite:PS00190;locus_tag=Cj1357c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1290347	1290400	.	-	.	ID=id-Cj1357c-7;Note=1 probable transmembrane helix predicted for Cj1357c by TMHMM2.0 at aa 5-22;gbkey=misc_feature;gene=nrfA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1357c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1290427	1290942	.	-	.	ID=gene-Cj1358c;Name=nrfH;gbkey=Gene;gene=nrfH;gene_biotype=protein_coding;locus_tag=Cj1358c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1290427	1290942	.	-	0	ID=cds-CAL35470.1;Parent=gene-Cj1358c;Dbxref=EnsemblGenomes-Gn:Cj1358c,EnsemblGenomes-Tr:CAL35470,GOA:Q0P8Q1,InterPro:IPR005126,InterPro:IPR011031,InterPro:IPR017571,InterPro:IPR024717,UniProtKB/TrEMBL:Q0P8Q1,NCBI_GP:CAL35470.1;Name=CAL35470.1;Note=Original (2000) note: Cj1358c%2C probable periplasmic cytochrome C%2C len: 171 aa%3B similar to e.g. NAPC_ECOLI cytochrome C-type protein NAPC (200 aa)%2C fasta scores opt: 201 z-score: 242.9 E(): 3.1e-06%2C 34.5%25 identity in 165 aa overlap. No Hp match. Contains probable N-terminal signal sequence and 3x PS00190 Cytochrome c family heme-binding site signature%3B~Updated (2006) note: Pfam domain PF03264 NapC/NirT cytochrome c family%2C N-terminal was identified within CDS. Further support given to product function. Characterisation work carried out within Wolinella succinogenes (PMID:10672190). Identity score was marginal. Putative was kept within product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:10672190%2C PMID:12095623%2C PMID:12618466;gbkey=CDS;gene=nrfH;inference=protein motif:Prosite:PS00190;locus_tag=Cj1358c;product=putative periplasmic cytochrome C;protein_id=CAL35470.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1290433	1290909	.	-	.	ID=id-Cj1358c;Note=HMMPfam hit to PF03264%2C NapC/NirT cytochrome c family%2C N-termin%2C score 8.9e-12;gbkey=misc_feature;gene=nrfH;inference=protein motif:Pfam:PF03264;locus_tag=Cj1358c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1290454	1290471	.	-	.	ID=id-Cj1358c-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=nrfH;inference=protein motif:Prosite:PS00190;locus_tag=Cj1358c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1290688	1290705	.	-	.	ID=id-Cj1358c-3;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=nrfH;inference=protein motif:Prosite:PS00190;locus_tag=Cj1358c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1290778	1290795	.	-	.	ID=id-Cj1358c-4;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=nrfH;inference=protein motif:Prosite:PS00190;locus_tag=Cj1358c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1290838	1290906	.	-	.	ID=id-Cj1358c-5;Note=1 probable transmembrane helix predicted for Cj1358c by TMHMM2.0 at aa 13-35;gbkey=misc_feature;gene=nrfH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1358c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1291131	1293215	.	+	.	ID=gene-Cj1359;Name=ppk;gbkey=Gene;gene=ppk;gene_biotype=protein_coding;locus_tag=Cj1359
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1291131	1293215	.	+	0	ID=cds-CAL35471.1;Parent=gene-Cj1359;Dbxref=EnsemblGenomes-Gn:Cj1359,EnsemblGenomes-Tr:CAL35471,GOA:Q9PMU0,InterPro:IPR003414,InterPro:IPR024953,InterPro:IPR025198,InterPro:IPR025200,NCBI_GP:CAL35471.1;Name=CAL35471.1;Note=Original (2000) note: Cj1359%2C ppk%2C probable polyphosphate kinase%2C len: 694 aa%3B highly similar to TR:O32350 (EMBL:Y07620) Campylobacter coli polyphosphate kinase (694 aa)%2C fasta scores%3B opt: 4148 z-score: 4661.1 E(): 0%2C 91.2%25 identity in 694 aa overlap%2C and similar to PPK_ECOLI polyphosphate kinase (EC 2.7.4.1) (687 aa)%2Cfasta scores%3B opt: 1083 z-score: 1216.8 E(): 0%2C 30.9%25 identity in 692 aa overlap. 47.4%25 identity to HP1010%3B~Updated (2006) note: Characterised within Campylobacter coli%2C so putative not added to product function. Pfam domain PF02503 Polyphosphate kinase identified within CDS. Further support given to product function. Functional classification - Central intermediary metabolism - General%3B~PMID:8574410;gbkey=CDS;gene=ppk;inference=protein motif:Pfam:PF02503;locus_tag=Cj1359;product=polyphosphate kinase;protein_id=CAL35471.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1291143	1293137	.	+	.	ID=id-Cj1359;Note=HMMPfam hit to PF02503%2C Polyphosphate kinase%2C score 0;gbkey=misc_feature;gene=ppk;inference=protein motif:Pfam:PF02503;locus_tag=Cj1359
gi|15791399|ref|NC_002163.1|	EMBL	transcript	1293300	1293658	.	-	.	ID=rna-gi|15791399|ref|NC_002163.1|:1293300..1293658;Note=10Sa RNA (tmRNA)%2C Putative Proteolysis Tag: (A)ANNVKFAPAYAKAA%3B~Updated (2006) note: Rfam domain RF00023%2C tmRNA also identified within CDS. Further support given to product function;gbkey=misc_RNA
gi|15791399|ref|NC_002163.1|	EMBL	exon	1293300	1293658	.	-	.	ID=exon-gi|15791399|ref|NC_002163.1|:1293300..1293658-1;Parent=rna-gi|15791399|ref|NC_002163.1|:1293300..1293658;Note=10Sa RNA (tmRNA)%2C Putative Proteolysis Tag: (A)ANNVKFAPAYAKAA%3B~Updated (2006) note: Rfam domain RF00023%2C tmRNA also identified within CDS. Further support given to product function;gbkey=misc_RNA
gi|15791399|ref|NC_002163.1|	EMBL	gene	1293527	1293571	.	-	.	ID=gene-Cj1360c;Name=Cj1360c;end_range=1293571,.;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1360c;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1293527	1293571	.	-	0	ID=cds-CAL35472.1;Parent=gene-Cj1360c;Dbxref=EnsemblGenomes-Gn:Cj1360c,EnsemblGenomes-Tr:CAL35472,UniProtKB/TrEMBL:Q0P8P9,NCBI_GP:CAL35472.1;Name=CAL35472.1;Note=Original (2000) note: Cj1360c%2C probable proteolysis tag for 10Sa_RNA ((A)ANNVKFAPAYAKAA)%2C len: 14 aa%3B similar to TR:P96347 (EMBL:U68082) H. pylori coded portion of proteolysis tag (fragment) (14 aa)%2C fasta scores%3B opt: 66 z-score: 192.9 E(): 0.0019%2C 76.9%25 identity in 13 aa overlap. Corresponds to c(838688..838726) in Hp seq. Functional classification - Degradation of macromolecules - Proteins%2C peptides and glycopeptides;end_range=1293571,.;gbkey=CDS;locus_tag=Cj1360c;partial=true;product=putative proteolysis tag for 10Sa_RNA;protein_id=CAL35472.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1293659	1294111	.	-	.	ID=gene-Cj1361c;Name=Cj1361c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1361c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1293659	1294111	.	-	0	ID=cds-CAL35473.1;Parent=gene-Cj1361c;Dbxref=EnsemblGenomes-Gn:Cj1361c,EnsemblGenomes-Tr:CAL35473,GOA:Q0P8P8,InterPro:IPR008207,UniProtKB/TrEMBL:Q0P8P8,NCBI_GP:CAL35473.1;Name=CAL35473.1;Note=Original (2000) note: Cj1361c%2C unknown%2C len: 150 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj1361c;product=hypothetical protein Cj1361c;protein_id=CAL35473.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1294160	1295167	.	+	.	ID=gene-Cj1362;Name=ruvB;gbkey=Gene;gene=ruvB;gene_biotype=protein_coding;locus_tag=Cj1362
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1294160	1295167	.	+	0	ID=cds-CAL35474.1;Parent=gene-Cj1362;Dbxref=EnsemblGenomes-Gn:Cj1362,EnsemblGenomes-Tr:CAL35474,GOA:Q9PMT7,InterPro:IPR003593,InterPro:IPR004605,InterPro:IPR008823,InterPro:IPR008824,InterPro:IPR011991,InterPro:IPR027417,NCBI_GP:CAL35474.1;Name=CAL35474.1;Note=Original (2000) note: Cj1362%2C ruvB%2C probable holliday junction DNA helicase%2C len: 335 aa%3B highly similar to many e.g. RUVB_ECOLI holliday junction DNA helicase RUVB (336 aa)%2C fasta scores%3B opt: 1099 z-score: 1229.5 E(): 0%2C 52.0%25 identity in 325 aa overlap. 69.6%25 identity to HP1059. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domains PF05496 Holliday junction DNA helicase ruvB N-terminal%2C PF00004 ATPase family associated with various cellular activities (AAA) and PF05491 Holliday junction DNA helicase ruvB C-terminal were all identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score%2C so puatative not added to product function. Functional classification - DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:8433990;gbkey=CDS;gene=ruvB;inference=protein motif:Prosite:PS00017;locus_tag=Cj1362;product=holliday junction DNA helicase;protein_id=CAL35474.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1294163	1294318	.	+	.	ID=id-Cj1362;Note=HMMPfam hit to PF05496%2C Holliday junction DNA helicase ruvB N-termin%2C score 1.3e-26;gbkey=misc_feature;gene=ruvB;inference=protein motif:Pfam:PF05496;locus_tag=Cj1362
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1294319	1294858	.	+	.	ID=id-Cj1362-2;Note=HMMPfam hit to PF00004%2C ATPase family associated with various cellul%2C score 5.5e-28;gbkey=misc_feature;gene=ruvB;inference=protein motif:Pfam:PF00004;locus_tag=Cj1362
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1294334	1294357	.	+	.	ID=id-Cj1362-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ruvB;inference=protein motif:Prosite:PS00017;locus_tag=Cj1362
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1294907	1295140	.	+	.	ID=id-Cj1362-4;Note=HMMPfam hit to PF05491%2C Holliday junction DNA helicase ruvB C-termin%2C score 4.6e-39;gbkey=misc_feature;gene=ruvB;inference=protein motif:Pfam:PF05491;locus_tag=Cj1362
gi|15791399|ref|NC_002163.1|	EMBL	gene	1295171	1296214	.	+	.	ID=gene-Cj1363;Name=amaA;gbkey=Gene;gene=amaA;gene_biotype=protein_coding;locus_tag=Cj1363
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1295171	1296214	.	+	0	ID=cds-CAL35475.1;Parent=gene-Cj1363;Dbxref=EnsemblGenomes-Gn:Cj1363,EnsemblGenomes-Tr:CAL35475,InterPro:IPR002549,UniProtKB/TrEMBL:Q0P8P6,NCBI_GP:CAL35475.1;Name=CAL35475.1;Note=Original (2000) note: Cj1363%2C amaA%2C acid membrane antigen A%2C len: 347 aa%3B similar to many hypothetical membrane proteins e.g. TR:O66948 (EMBL:AE000705) Aquifex aeolicus AQ_740 (353 aa)%2C fasta scores%3B opt: 268 z-score: 311.7 E(): 4.6e-10%2C 24.1%25 identity in 352 aa overlap. 32.2%25 identity to HP0567. Identical in part to TR:O69293 (EMBL:Y16882) C. jejuni predicted outer membrane protein from rearranged lambda clone (364 aa). (Phillippa Connerton(p.connerton@ic.ac.uk) pers. comm.)%3B~Updated (2006) note: Seven probable transmembrane helices predicted by TMHMM2.0. Pfam domain PF01594 Domain of unknown function DUF20 also identified within CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;gene=amaA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1363;product=acid membrane antigen A;protein_id=CAL35475.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1295186	1296187	.	+	.	ID=id-Cj1363;Note=HMMPfam hit to PF01594%2C Domain of unknown function DUF20%2C score 3.5e-68;gbkey=misc_feature;gene=amaA;inference=protein motif:Pfam:PF01594;locus_tag=Cj1363
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1295189	1295293	.	+	.	ID=id-Cj1363-2;Note=7 probable transmembrane helices predicted for Cj1363 by TMHMM2.0 at aa 7-41%2C 56-78%2C 157-179%2C 194-216%2C225-247%2C 262-284 and 305-327;gbkey=misc_feature;gene=amaA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1363;part=1/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1295336	1295404	.	+	.	ID=id-Cj1363-2;Note=7 probable transmembrane helices predicted for Cj1363 by TMHMM2.0 at aa 7-41%2C 56-78%2C 157-179%2C 194-216%2C225-247%2C 262-284 and 305-327;gbkey=misc_feature;gene=amaA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1363;part=2/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1295639	1295707	.	+	.	ID=id-Cj1363-2;Note=7 probable transmembrane helices predicted for Cj1363 by TMHMM2.0 at aa 7-41%2C 56-78%2C 157-179%2C 194-216%2C225-247%2C 262-284 and 305-327;gbkey=misc_feature;gene=amaA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1363;part=3/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1295750	1295818	.	+	.	ID=id-Cj1363-2;Note=7 probable transmembrane helices predicted for Cj1363 by TMHMM2.0 at aa 7-41%2C 56-78%2C 157-179%2C 194-216%2C225-247%2C 262-284 and 305-327;gbkey=misc_feature;gene=amaA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1363;part=4/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1295843	1295911	.	+	.	ID=id-Cj1363-2;Note=7 probable transmembrane helices predicted for Cj1363 by TMHMM2.0 at aa 7-41%2C 56-78%2C 157-179%2C 194-216%2C225-247%2C 262-284 and 305-327;gbkey=misc_feature;gene=amaA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1363;part=5/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1295954	1296022	.	+	.	ID=id-Cj1363-2;Note=7 probable transmembrane helices predicted for Cj1363 by TMHMM2.0 at aa 7-41%2C 56-78%2C 157-179%2C 194-216%2C225-247%2C 262-284 and 305-327;gbkey=misc_feature;gene=amaA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1363;part=6/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1296083	1296151	.	+	.	ID=id-Cj1363-2;Note=7 probable transmembrane helices predicted for Cj1363 by TMHMM2.0 at aa 7-41%2C 56-78%2C 157-179%2C 194-216%2C225-247%2C 262-284 and 305-327;gbkey=misc_feature;gene=amaA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1363;part=7/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1296244	1297635	.	-	.	ID=gene-Cj1364c;Name=fumC;gbkey=Gene;gene=fumC;gene_biotype=protein_coding;locus_tag=Cj1364c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1296244	1297635	.	-	0	ID=cds-CAL35476.1;Parent=gene-Cj1364c;Dbxref=EnsemblGenomes-Gn:Cj1364c,EnsemblGenomes-Tr:CAL35476,GOA:O69294,InterPro:IPR000362,InterPro:IPR005677,InterPro:IPR008948,InterPro:IPR018951,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,NCBI_GP:CAL35476.1;Name=CAL35476.1;Note=Original (2000) note: Cj1364c%2C fumC%2C probable fumarate hydratase%2C len: 463 aa%3B identical to TR:O69294 (EMBL:Y16882) C. jejuni fumC (463 aa)%2C and highly similar to e.g. FUMH_BACSU fumarate hydratase%2C class-II (EC 4.2.1.2) (462 aa)%2C fasta scores%3B opt: 2135 z-score: 2413.3 E(): 0%2C 67.8%25 identity in 463 aa overlap. 76.9%25 identity to HP1325. Contains PS00163 Fumarate lyases signature%2C and Pfam match to entry PF00206 lyase_1%2C Lyases%3B~Updated (2006) note: Characterised in Campylobacter jejuni%2C so putative not added to product function. Functional classification - Energy metabolism -Tricarboxylic acid cycle%3B~PMID:1917897%2C PMID:10533287;gbkey=CDS;gene=fumC;inference=protein motif:Prosite:PS00163;locus_tag=Cj1364c;product=fumarate hydratase;protein_id=CAL35476.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1296613	1297605	.	-	.	ID=id-Cj1364c;Note=HMMPfam hit to PF00206%2C Lyase%2C score 3.2e-163;gbkey=misc_feature;gene=fumC;inference=protein motif:Pfam:PF00206;locus_tag=Cj1364c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1296661	1296690	.	-	.	ID=id-Cj1364c-2;Note=PS00163 Fumarate lyases signature;gbkey=misc_feature;gene=fumC;inference=protein motif:Prosite:PS00163;locus_tag=Cj1364c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1297691	1300816	.	-	.	ID=gene-Cj1365c;Name=Cj1365c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1365c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1297691	1300816	.	-	0	ID=cds-CAL35477.1;Parent=gene-Cj1365c;Dbxref=EnsemblGenomes-Gn:Cj1365c,EnsemblGenomes-Tr:CAL35477,GOA:Q0P8P4,InterPro:IPR000209,InterPro:IPR005546,InterPro:IPR011050,InterPro:IPR013425,InterPro:IPR015500,InterPro:IPR017318,InterPro:IPR022398,InterPro:IPR023828,UniProtKB/TrEMBL:Q0P8P4,NCBI_GP:CAL35477.1;Name=CAL35477.1;Note=Original (2000) note: Cj1365c%2C probable secreted serine protease%2C len: 1041 aa%3B similar to e.g. TR:Q54484 (EMBL:D78380) Serratia marcescens serine protease homologue SSP-H2 (1034 aa)%2C fasta scores%3B opt: 245 z-score: 257.1 E(): 5.1e-07%2C 23.5%25 identity in 591 aa overlap%2C and PRTS_SERMA extracellular serine protease precursor (EC 3.4.21.-) (1045 aa)%2C fasta scores%3B opt: 205 z-score: 214.6 E(): 0.00012%2C 23.7%25 identity in 615 aa overlap. No Hp match. Contains PS00137 Serine proteases%2Csubtilase family%2C histidine active site%2C PS00138 Serine proteases%2C subtilase family%2C serine active site%2C Pfam match to entry PF00082 subtilase%2C Subtilase family of serine proteases%2C and probable N-terminal signal sequence%3B~Updated (2006) note: Specific characterisation with acceptable identity scores not carried out yet%2C so putative kept within product function. Functional classification - Degradation of macromolecules - Proteins%2Cpeptides and glycopeptides;gbkey=CDS;inference=protein motif:Prosite:PS00138;locus_tag=Cj1365c;product=putative secreted serine protease;protein_id=CAL35477.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1297718	1298494	.	-	.	ID=id-Cj1365c;Note=HMMPfam hit to PF03797%2C Autotransporter beta-domain%2C score 3.7e-37;gbkey=misc_feature;inference=protein motif:Pfam:PF03797;locus_tag=Cj1365c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1299773	1300762	.	-	.	ID=id-Cj1365c-2;Note=HMMPfam hit to PF00082%2C Subtilase family%2C score 6.3e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF00082;locus_tag=Cj1365c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1299917	1299949	.	-	.	ID=id-Cj1365c-3;Note=PS00138 Serine proteases%2C subtilase family%2C serine active site;gbkey=misc_feature;inference=protein motif:Prosite:PS00138;locus_tag=Cj1365c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1300547	1300579	.	-	.	ID=id-Cj1365c-4;Note=PS00137 Serine proteases%2C subtilase family%2Chistidine active site;gbkey=misc_feature;inference=protein motif:Prosite:PS00137;locus_tag=Cj1365c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1300819	1302615	.	-	.	ID=gene-Cj1366c;Name=glmS;gbkey=Gene;gene=glmS;gene_biotype=protein_coding;locus_tag=Cj1366c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1300819	1302615	.	-	0	ID=cds-CAL35478.1;Parent=gene-Cj1366c;Dbxref=EnsemblGenomes-Gn:Cj1366c,EnsemblGenomes-Tr:CAL35478,GOA:Q9PMT4,InterPro:IPR001347,InterPro:IPR005855,InterPro:IPR017932,InterPro:IPR029055,NCBI_GP:CAL35478.1;Name=CAL35478.1;Note=Original (2000) note: Cj1366c%2C glmS%2C probable glucosamine--fructose-6-phosphate aminotransferase (isomerizing)%2C len: 598 aa%3B similar to e.g. GLMS_ECOLI glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16) (608 aa)%2C fasta scores%3B opt: 1373 z-score: 1664.1 E(): 0%2C 41.3%25 identity in 613 aa overlap. 52.5%25 identity to HP1532. Contains Pfam match to entry PF00310 GATase_2%2C Glutamine amidotransferases class-II%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score%2C so putative not added to product funtion. Functional classification - Central intermediary metabolism - Amino sugars%3B~PMID:10091662%2C PMID:8805567;gbkey=CDS;gene=glmS;inference=protein motif:Pfam:PF00310;locus_tag=Cj1366c;product=glucosamine--fructose-6-phosphate aminotransferase (isomerizing);protein_id=CAL35478.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1300864	1301265	.	-	.	ID=id-Cj1366c;Note=HMMPfam hit to PF01380%2C SIS domain%2C score 0.00048;gbkey=misc_feature;gene=glmS;inference=protein motif:Pfam:PF01380;locus_tag=Cj1366c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1301365	1301769	.	-	.	ID=id-Cj1366c-2;Note=HMMPfam hit to PF01380%2C SIS domain%2C score 3e-39;gbkey=misc_feature;gene=glmS;inference=protein motif:Pfam:PF01380;locus_tag=Cj1366c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1302031	1302612	.	-	.	ID=id-Cj1366c-3;Note=HMMPfam hit to PF00310%2C Glutamine amidotransferases class-II%2C score 9.2e-23;gbkey=misc_feature;gene=glmS;inference=protein motif:Pfam:PF00310;locus_tag=Cj1366c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1302598	1302615	.	-	.	ID=id-Cj1366c-4;Note=PS00443 Glutamine amidotransferases class-II active site;gbkey=misc_feature;gene=glmS;inference=protein motif:Prosite:PS00443;locus_tag=Cj1366c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1302620	1304968	.	-	.	ID=gene-Cj1367c;Name=Cj1367c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1367c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1302620	1304968	.	-	0	ID=cds-CAL35479.1;Parent=gene-Cj1367c;Dbxref=EnsemblGenomes-Gn:Cj1367c,EnsemblGenomes-Tr:CAL35479,GOA:Q0P8P2,UniProtKB/TrEMBL:Q0P8P2,NCBI_GP:CAL35479.1;Name=CAL35479.1;Note=Original (2000) note: Cj1367c%2C possible nucleotidyltransferase%2C len: 782 aa%3B weak similarity to TR:Q53245 (EMBL:U47030) Rhizobium tropici putative uridylyltransferase/uridylyl-removing enzyme (971 aa)%2Cfasta scores%3B opt: 202 z-score: 226.1 E(): 2.7e-05%2C 19.7%25 identity in 857 aa overlap%2C and GLND_HAEIN [protein-PII] uridylyltransferase (863 aa)%2C fasta scores%3B opt: 119 z-score: 133.2 E(): 4%2C 19.5%25 identity in 822 aa overlap%2C(blastp score%3B E%3D4.3e-07). No Hp match. Contains C(1-2) polymorphic region at aa 148%3B C(2) (consensus) gives this ORF%2C C(1) gives truncation after +8 aa%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product funciton. Functional classification - Misc;gbkey=CDS;locus_tag=Cj1367c;product=putative nucleotidyltransferase;protein_id=CAL35479.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1305112	1306176	.	+	.	ID=gene-Cj1368;Name=Cj1368;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1368
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1305112	1306176	.	+	0	ID=cds-CAL35480.1;Parent=gene-Cj1368;Dbxref=EnsemblGenomes-Gn:Cj1368,EnsemblGenomes-Tr:CAL35480,GOA:Q0P8P1,InterPro:IPR005244,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR020050,InterPro:IPR022432,UniProtKB/TrEMBL:Q0P8P1,NCBI_GP:CAL35480.1;Name=CAL35480.1;Note=Original (2000) note: Cj1368%2C unknown%2C len: 354 aa%3B similar to hypothetical proteins e.g. TR:O66888 (EMBL:AE000700) Aquifex aeolicus AQ_648 (371 aa)%2C fasta scores%3B opt: 956 z-score: 1117.5 E(): 0%2C 44.1%25 identity in 349 aa overlap. 57.4%25 identity to HP0654. Also similar to Cj0462 (35.5%25 identity in 349 aa overlap)%3B~Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation carried out yet%2C so putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Pfam:PF04055;locus_tag=Cj1368;product=putative radical SAM domain protein;protein_id=CAL35480.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1305271	1305789	.	+	.	ID=id-Cj1368;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 2.2e-16;gbkey=misc_feature;inference=protein motif:Pfam:PF04055;locus_tag=Cj1368
gi|15791399|ref|NC_002163.1|	EMBL	gene	1306186	1307505	.	+	.	ID=gene-Cj1369;Name=Cj1369;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1369
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1306186	1307505	.	+	0	ID=cds-CAL35481.1;Parent=gene-Cj1369;Dbxref=EnsemblGenomes-Gn:Cj1369,EnsemblGenomes-Tr:CAL35481,GOA:Q0P8P0,InterPro:IPR006043,UniProtKB/TrEMBL:Q0P8P0,NCBI_GP:CAL35481.1;Name=CAL35481.1;Note=Original (2000) note: Cj1369%2C probable transmembrane transport protein%2C len: 439 aa%3B similar to many hypothetical membrane proteins e.g. YJCD_ECOLI (449 aa)%2C fasta scores%3B opt: 897 z-score: 1039.1 E(): 0%2C 34.7%25 identity in 429 aa overlap. 50.7%25 identity to HP1175. Contains Pfam match to entry PF00860 xan_ur_permease%2CXanthine/uracil permeases family%3B~Updated (2006) note: Pfam domain PF00860 Permease family protein identified within CDS. Also%2C thirteen probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member based on motif search. No specific characterisation has been been carried out yet%2C so putative kept within product function. Functional classification - Transport/binding proteins -Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1369;product=putative permease;protein_id=CAL35481.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1306225	1307385	.	+	.	ID=id-Cj1369;Note=HMMPfam hit to PF00860%2C Permease family%2C score 4e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF00860;locus_tag=Cj1369
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1306234	1306302	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=1/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1306315	1306383	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=2/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1306402	1306470	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=3/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1306483	1306551	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=4/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1306576	1306644	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=5/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1306687	1306743	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=6/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1306756	1306809	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=7/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1306921	1306989	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=8/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1307050	1307118	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=9/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1307146	1307214	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=10/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1307233	1307286	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=11/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1307314	1307409	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=12/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1307443	1307499	.	+	.	ID=id-Cj1369-2;Note=13 probable transmembrane helices predicted for Cj1369 by TMHMM2.0 at aa 17-39%2C 44-66%2C 73-95%2C 100-122%2C131-153%2C 168-186%2C 191-208%2C 246-268%2C 289-311%2C 321-343%2C350-367%2C 377-408 and 420-438;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1369;part=13/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1307519	1307962	.	+	.	ID=gene-Cj1370;Name=Cj1370;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1370
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1307519	1307962	.	+	0	ID=cds-CAL35482.1;Parent=gene-Cj1370;Dbxref=EnsemblGenomes-Gn:Cj1370,EnsemblGenomes-Tr:CAL35482,GOA:Q0P8N9,InterPro:IPR000836,InterPro:IPR029057,UniProtKB/TrEMBL:Q0P8N9,NCBI_GP:CAL35482.1;Name=CAL35482.1;Note=Original (2000) note: Cj1370%2C possible nucleotide phosphoribosyltransferase%2C len: 147 aa%3B similar to e.g. TR:O50284 (EMBL:AF035967) hypoxanthine ribosyl transferase (176 aa)%2C fasta scores%3B opt: 158 z-score: 205.5 E(): 0.00038%2C 26.2%25 identity in 145 aa overlap%2C and XGPT_ECOLI xanthine-guanine phosphoribosyltransferase (152 aa)%2C fasta scores%3B opt: 128 z-score: 170.3 E(): 0.035%2C 24.6%25 identity in 142 aa overlap. 39.5%25 identity to HP0735. Contains PS00103 Purine/pyrimidine phosphoribosyl transferases signature%3B~Updated (2006) note: Pfam domain PF00156 Phosphoribosyl transferase domain identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Functional classification - Salvage of nucleosides and nucleotides;gbkey=CDS;inference=protein motif:Prosite:PS00103;locus_tag=Cj1370;product=putative nucleotide phosphoribosyltransferase;protein_id=CAL35482.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1307519	1307914	.	+	.	ID=id-Cj1370;Note=HMMPfam hit to PF00156%2C Phosphoribosyl transferase domain%2C score 1.2e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF00156;locus_tag=Cj1370
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1307765	1307803	.	+	.	ID=id-Cj1370-2;Note=PS00103 Purine/pyrimidine phosphoribosyl transferases signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00103;locus_tag=Cj1370
gi|15791399|ref|NC_002163.1|	EMBL	gene	1308007	1308705	.	+	.	ID=gene-Cj1371;Name=Cj1371;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1371
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1308007	1308705	.	+	0	ID=cds-CAL35483.1;Parent=gene-Cj1371;Dbxref=EnsemblGenomes-Gn:Cj1371,EnsemblGenomes-Tr:CAL35483,GOA:Q0P8N8,InterPro:IPR007428,UniProtKB/TrEMBL:Q0P8N8,NCBI_GP:CAL35483.1;Name=CAL35483.1;Note=Original (2000) note: Cj1371%2C probable periplasmic protein (vacJ homolog)%2C len: 232 aa%3B similar to e.g. VACJ_SHIFL VACJ lipoprotein precursor (required for intercellular spreading of Shigella flexneri) (251 aa)%2Cfasta scores%3B opt: 310 z-score: 377.2 E(): 1e-13%2C 32.5%25 identity in 197 aa overlap. No Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF04333 VacJ like lipoprotein identitied within CDS. Further support given to product function. Putative kept within product function. Functional classification - Pathogenicity%3B~PMID:8145644;gbkey=CDS;inference=protein motif:Pfam:PF04333;locus_tag=Cj1371;product=putative periplasmic protein (VacJ homolog);protein_id=CAL35483.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1308100	1308702	.	+	.	ID=id-Cj1371;Note=HMMPfam hit to PF04333%2C VacJ like lipoprotein%2Cscore 1.9e-116;gbkey=misc_feature;inference=protein motif:Pfam:PF04333;locus_tag=Cj1371
gi|15791399|ref|NC_002163.1|	EMBL	gene	1308715	1309284	.	+	.	ID=gene-Cj1372;Name=Cj1372;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1372
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1308715	1309284	.	+	0	ID=cds-CAL35484.1;Parent=gene-Cj1372;Dbxref=EnsemblGenomes-Gn:Cj1372,EnsemblGenomes-Tr:CAL35484,InterPro:IPR008869,InterPro:IPR023094,UniProtKB/TrEMBL:Q0P8N7,NCBI_GP:CAL35484.1;Name=CAL35484.1;Note=Original (2000) note: Cj1372%2C probable periplasmic protein%2C len: 189 aa%3B similar to e.g. YRBC_ECOLI (211 aa)%2Cfasta scores%3B opt: 189 z-score: 222.3 E(): 4.4e-05%2C 22.5%25 identity in 200 aa overlap. No Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF05494 Toluene tolerance%2C Ttg2 identified within CDS. This family is a transporter which shows similarity to ABC transporters. No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:9658016;gbkey=CDS;inference=protein motif:Pfam:PF05494;locus_tag=Cj1372;product=putative periplasmic protein;protein_id=CAL35484.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1308754	1309275	.	+	.	ID=id-Cj1372;Note=HMMPfam hit to PF05494%2C Toluene tolerance%2C Ttg2%2Cscore 3.8e-69;gbkey=misc_feature;inference=protein motif:Pfam:PF05494;locus_tag=Cj1372
gi|15791399|ref|NC_002163.1|	EMBL	gene	1309284	1311755	.	+	.	ID=gene-Cj1373;Name=Cj1373;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1373
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1309284	1311755	.	+	0	ID=cds-CAL35485.1;Parent=gene-Cj1373;Dbxref=EnsemblGenomes-Gn:Cj1373,EnsemblGenomes-Tr:CAL35485,GOA:Q0P8N6,InterPro:IPR000731,InterPro:IPR004869,UniProtKB/TrEMBL:Q0P8N6,NCBI_GP:CAL35485.1;Name=CAL35485.1;Note=Original (2000) note: Cj1373%2C probable integral membrane protein%2C len: 823 aa%3B similar to hypothetical membrane proteins e.g. TR:O51268 (EMBL:AE001135) Borrelia burgdorferi conserved hypothetical integral membrane protein (767 aa)%2C fasta scores%3B opt: 331 z-score: 348.2 E(): 4.2e-12%2C 24.8%25 identity in 840 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02460 Patched family protein identified within CDS. Prosite domain PS50156 SSD x2%2C Sterol-sensing 5TM box was also identified within CDS. Also%2C thirteen probable transmembrane helices predicted by TMHMM2.0. No specific characterisation carried out yet%2C so putative kept within product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1373;product=putative ntegral membrane protein;protein_id=CAL35485.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1309326	1309379	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=1/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1309965	1310018	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=2/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1310028	1310087	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=3/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1310100	1310168	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=4/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1310178	1310246	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=5/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1310340	1310408	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=6/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1310418	1310486	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=7/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1310580	1310633	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=8/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1311234	1311302	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=9/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1311321	1311389	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=10/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1311399	1311467	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=11/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1311525	1311593	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=12/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1311621	1311689	.	+	.	ID=id-Cj1373;Note=13 probable transmembrane helices predicted for Cj1373 by TMHMM2.0 at aa 15-32%2C 228-245%2C 249-268%2C 273-295%2C299-321%2C 353-375%2C 379-401%2C 433-450%2C 651-673%2C 680-702%2C706-728%2C 748-770 and 780-802;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1373;part=13/13;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1311786	1312388	.	-	.	ID=gene-Cj1374c;Name=Cj1374c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1374c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1311786	1312388	.	-	0	ID=cds-CAL35486.1;Parent=gene-Cj1374c;Dbxref=EnsemblGenomes-Gn:Cj1374c,EnsemblGenomes-Tr:CAL35486,GOA:Q9PMS6,InterPro:IPR002637,InterPro:IPR020922,InterPro:IPR029001,NCBI_GP:CAL35486.1;Name=CAL35486.1;Note=Original (2000) note: Cj1374c%2C unknown%2C len: 200 aa%3B similar to hypothetical proteins e.g. TR:P94558 B. subtilis YSNA (198 aa)%2C fasta scores%3B opt: 451 z-score: 528.4 E(): 3.9e-22%2C 42.4%25 identity in 198 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01725 Ham1 family identified within CDS. Functional classification -Conserved hypothetical proteins%3B~PMID:8789257;gbkey=CDS;inference=protein motif:Pfam:PF01725;locus_tag=Cj1374c;product=conserved hypothetical protein Cj1374c;protein_id=CAL35486.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1311807	1312382	.	-	.	ID=id-Cj1374c;Note=HMMPfam hit to PF01725%2C Ham1 family%2C score 1.5e-52;gbkey=misc_feature;inference=protein motif:Pfam:PF01725;locus_tag=Cj1374c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1312555	1313850	.	+	.	ID=gene-Cj1375;Name=Cj1375;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1375
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1312555	1313850	.	+	0	ID=cds-CAL35487.1;Parent=gene-Cj1375;Dbxref=EnsemblGenomes-Gn:Cj1375,EnsemblGenomes-Tr:CAL35487,GOA:Q0P8N4,InterPro:IPR001958,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0P8N4,NCBI_GP:CAL35487.1;Name=CAL35487.1;Note=Original (2000) note: Cj1375%2C probable efflux protein%2C len: 431 aa%3B similar to members of the major facilitator family e.g. BMR1_BACSU multidrug resistance protein 1 (multidrug-efflux transporter 1) (389 aa)%2C fasta scores%3B opt: 364 z-score: 415.1 E(): 8e-16%2C 27.1%25 identity in 384 aa overlap%2C and NORA_STAAU quinolone resistance NORA protein (388 aa)%2C fasta scores%3B opt: 353 z-score: 402.8 E(): 3.9e-15%2C 26.7%25 identity in 375 aa overlap. 41.9%25 identity to HP1181. Also similar to Cj0035c (24.7%25 identity in 372 aa overlap). Contains Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporters%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Prints motif also identified TCRTETA domain%2C Tetracycline resistance protein signature IPR001958. Also%2C eleven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Product function further modified. No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Functional classification - Drug/analogue sensitivity%3B~PMID:7961792;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1375;product=putative multidrug efflux transporter;protein_id=CAL35487.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1312576	1313697	.	+	.	ID=id-Cj1375;Note=HMMPfam hit to PF00083%2C Sugar (and other) transporter%2C score 8.1e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF00083;locus_tag=Cj1375
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1312576	1313604	.	+	.	ID=id-Cj1375-2;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 1.6e-61;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj1375
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1312582	1312650	.	+	.	ID=id-Cj1375-3;Note=11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32%2C 39-61%2C 71-93%2C 129-151%2C155-177%2C 205-227%2C 237-259%2C 268-285%2C 289-306%2C 327-349 and 353-375;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1375;part=1/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1312669	1312737	.	+	.	ID=id-Cj1375-3;Note=11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32%2C 39-61%2C 71-93%2C 129-151%2C155-177%2C 205-227%2C 237-259%2C 268-285%2C 289-306%2C 327-349 and 353-375;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1375;part=2/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1312765	1312833	.	+	.	ID=id-Cj1375-3;Note=11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32%2C 39-61%2C 71-93%2C 129-151%2C155-177%2C 205-227%2C 237-259%2C 268-285%2C 289-306%2C 327-349 and 353-375;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1375;part=3/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1312939	1313007	.	+	.	ID=id-Cj1375-3;Note=11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32%2C 39-61%2C 71-93%2C 129-151%2C155-177%2C 205-227%2C 237-259%2C 268-285%2C 289-306%2C 327-349 and 353-375;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1375;part=4/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1313017	1313085	.	+	.	ID=id-Cj1375-3;Note=11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32%2C 39-61%2C 71-93%2C 129-151%2C155-177%2C 205-227%2C 237-259%2C 268-285%2C 289-306%2C 327-349 and 353-375;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1375;part=5/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1313167	1313235	.	+	.	ID=id-Cj1375-3;Note=11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32%2C 39-61%2C 71-93%2C 129-151%2C155-177%2C 205-227%2C 237-259%2C 268-285%2C 289-306%2C 327-349 and 353-375;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1375;part=6/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1313263	1313331	.	+	.	ID=id-Cj1375-3;Note=11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32%2C 39-61%2C 71-93%2C 129-151%2C155-177%2C 205-227%2C 237-259%2C 268-285%2C 289-306%2C 327-349 and 353-375;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1375;part=7/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1313356	1313409	.	+	.	ID=id-Cj1375-3;Note=11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32%2C 39-61%2C 71-93%2C 129-151%2C155-177%2C 205-227%2C 237-259%2C 268-285%2C 289-306%2C 327-349 and 353-375;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1375;part=8/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1313419	1313472	.	+	.	ID=id-Cj1375-3;Note=11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32%2C 39-61%2C 71-93%2C 129-151%2C155-177%2C 205-227%2C 237-259%2C 268-285%2C 289-306%2C 327-349 and 353-375;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1375;part=9/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1313533	1313601	.	+	.	ID=id-Cj1375-3;Note=11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32%2C 39-61%2C 71-93%2C 129-151%2C155-177%2C 205-227%2C 237-259%2C 268-285%2C 289-306%2C 327-349 and 353-375;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1375;part=10/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1313611	1313679	.	+	.	ID=id-Cj1375-3;Note=11 probable transmembrane helices predicted for Cj1375 by TMHMM2.0 at aa 10-32%2C 39-61%2C 71-93%2C 129-151%2C155-177%2C 205-227%2C 237-259%2C 268-285%2C 289-306%2C 327-349 and 353-375;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1375;part=11/11;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1313847	1314656	.	+	.	ID=gene-Cj1376;Name=Cj1376;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1376
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1313847	1314656	.	+	0	ID=cds-CAL35488.1;Parent=gene-Cj1376;Dbxref=EnsemblGenomes-Gn:Cj1376,EnsemblGenomes-Tr:CAL35488,InterPro:IPR000801,InterPro:IPR029058,UniProtKB/TrEMBL:Q0P8N3,NCBI_GP:CAL35488.1;Name=CAL35488.1;Note=Original (2000) note: Cj1376%2C probable periplasmic protein%2C len: 269 aa%3B similar to TR:O32102 (EMBL:Z99120) B. subtilis YUII protein (314 aa)%2C fasta scores%3B opt: 209 z-score: 257.4 E(): 4.9e-07%2C 30.6%25 identity in 242 aa overlap%2C and TR:O54506 (EMBL:U97227) Salmonella enterica IROE (305 aa)%2C fasta scores%3B opt: 195 z-score: 240.9 E(): 4.1e-06%2C 26.4%25 identity in 277 aa overlap. No Hp match. Contains probable N-terminal signal sequence. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1376;product=putative periplasmic protein;protein_id=CAL35488.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1314649	1316310	.	-	.	ID=gene-Cj1377c;Name=Cj1377c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1377c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1314649	1316310	.	-	0	ID=cds-CAL35489.1;Parent=gene-Cj1377c;Dbxref=EnsemblGenomes-Gn:Cj1377c,EnsemblGenomes-Tr:CAL35489,GOA:Q0P8N2,InterPro:IPR001450,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q0P8N2,NCBI_GP:CAL35489.1;Name=CAL35489.1;Note=Original (2000) note: Cj1377c%2C probable ferredoxin%2Clen: 553 aa%3B limited similarity to e.g. HYCF_ECOLI formate hydrogenlyase subunit 6 (180 aa)%2C fasta scores%3B opt: 212 z-score: 241.0 E(): 4e-06%2C 30.6%25 identity in 134 aa overlap. No Hp match. Contains PS00198 4Fe-4S ferredoxins%2Ciron-sulfur binding region signature%2C and 2x Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Functional classification - Energy metabolism - Electron transport;gbkey=CDS;inference=protein motif:Prosite:PS00198;locus_tag=Cj1377c;product=putative ferredoxin;protein_id=CAL35489.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1314979	1315050	.	-	.	ID=id-Cj1377c;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 7.5e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF00037;locus_tag=Cj1377c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1315537	1315608	.	-	.	ID=id-Cj1377c-2;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.00013;gbkey=misc_feature;inference=protein motif:Pfam:PF00037;locus_tag=Cj1377c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1315552	1315587	.	-	.	ID=id-Cj1377c-3;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00198;locus_tag=Cj1377c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1316388	1317710	.	+	.	ID=gene-Cj1378;Name=selA;gbkey=Gene;gene=selA;gene_biotype=protein_coding;locus_tag=Cj1378
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1316388	1317710	.	+	0	ID=cds-CAL35490.1;Parent=gene-Cj1378;Dbxref=EnsemblGenomes-Gn:Cj1378,EnsemblGenomes-Tr:CAL35490,GOA:Q9PMS2,InterPro:IPR004534,InterPro:IPR015421,InterPro:IPR015424,InterPro:IPR018319,NCBI_GP:CAL35490.1;Name=CAL35490.1;Note=Original (2000) note: Cj1378%2C selA%2C probable L-seryl-tRNA(Sec) selenium transferase (selenocysteine synthase)%2C len: 440 aa%3B similar to e.g. SELA_ECOLI L-seryl-tRNA(SeC) selenium transferase (EC 2.9.1.1) (463 aa)%2C fasta scores%3B opt: 781 z-score: 867.6 E(): 0%2C 37.5%25 identity in 451 aa overlap. 32.8%25 identity to HP1513%3B~Updated (2006) note: Pfam domain PF03841 L-seryl-tRNA selenium transferase identified within CDS. Further support given to product funciton. Characterised within Escherichia coli with acceptable identity scores. Thus%2C putative not added to product function. Functional classification - Aminoacyl tRNA synthetases and their modification%3B~PMID:9688279%2C PMID:2007584;gbkey=CDS;gene=selA;inference=protein motif:Pfam:PF03841;locus_tag=Cj1378;product=L-seryl-tRNA(SeC) selenium transferase;protein_id=CAL35490.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1316598	1317656	.	+	.	ID=id-Cj1378;Note=HMMPfam hit to PF03841%2C L-seryl-tRNA selenium transferase%2C score 4.4e-220;gbkey=misc_feature;gene=selA;inference=protein motif:Pfam:PF03841;locus_tag=Cj1378
gi|15791399|ref|NC_002163.1|	EMBL	gene	1317707	1319512	.	+	.	ID=gene-Cj1379;Name=selB;gbkey=Gene;gene=selB;gene_biotype=protein_coding;locus_tag=Cj1379
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1317707	1319512	.	+	0	ID=cds-CAL35491.1;Parent=gene-Cj1379;Dbxref=EnsemblGenomes-Gn:Cj1379,EnsemblGenomes-Tr:CAL35491,GOA:Q0P8N0,InterPro:IPR000795,InterPro:IPR004535,InterPro:IPR005225,InterPro:IPR009000,InterPro:IPR011991,InterPro:IPR015191,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P8N0,NCBI_GP:CAL35491.1;Name=CAL35491.1;Note=Original (2000) note: Cj1379%2C selB%2C probable selenocysteine-specific elongation factor%2C len: 601 aa%3B similar to e.g. SELB_ECOLI selenocysteine-specific elongation factor (614 aa)%2C fasta scores%3B opt: 479 z-score: 491.6 E(): 4.4e-20%2C 26.2%25 identity in 362 aa overlap. No Hp ortholog. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C and Pfam match to entry PF00009 GTP_EFTU%2C Elongation factor Tu family%3B~Updated (2006) note: Putative kept within product function as no characterisation with acceptable identity score has been carried out yet. Functional classification - Protein translation and modification%3B~PMID:2140572%2C PMID:16511023;gbkey=CDS;gene=selB;inference=protein motif:Prosite:PS00017;locus_tag=Cj1379;product=putative selenocysteine-specific elongation factor;protein_id=CAL35491.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1317707	1318210	.	+	.	ID=id-Cj1379;Note=HMMPfam hit to PF00009%2C Elongation factor Tu GTP binding domain%2C score 1.3e-28;gbkey=misc_feature;gene=selB;inference=protein motif:Pfam:PF00009;locus_tag=Cj1379
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1317734	1317757	.	+	.	ID=id-Cj1379-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=selB;inference=protein motif:Prosite:PS00017;locus_tag=Cj1379
gi|15791399|ref|NC_002163.1|	EMBL	gene	1319561	1320271	.	+	.	ID=gene-Cj1380;Name=Cj1380;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1380
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1319561	1320271	.	+	0	ID=cds-CAL35492.1;Parent=gene-Cj1380;Dbxref=EnsemblGenomes-Gn:Cj1380,EnsemblGenomes-Tr:CAL35492,InterPro:IPR012336,UniProtKB/TrEMBL:Q0P8M9,NCBI_GP:CAL35492.1;Name=CAL35492.1;Note=Original (2000) note: Cj1380%2C probable periplasmic protein%2C len: 236 aa%3B some similarity to e.g. DSBG_ECOLI thiol:disulfide interchange protein DSBG precursor (248 aa)%2C fasta scores%3B opt: 138 z-score: 165.8 E(): 0.062%2C26.8%25 identity in 164 aa overlap (the active site is conserved). 34.1%25 identity to HP0231. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Paper identified linking protein to glycoprotein. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:12186869;gbkey=CDS;locus_tag=Cj1380;product=putative periplasmic protein;protein_id=CAL35492.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1320277	1320807	.	+	.	ID=gene-Cj1381;Name=Cj1381;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1381
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1320277	1320807	.	+	0	ID=cds-CAL35493.1;Parent=gene-Cj1381;Dbxref=EnsemblGenomes-Gn:Cj1381,EnsemblGenomes-Tr:CAL35493,UniProtKB/TrEMBL:Q0P8M8,NCBI_GP:CAL35493.1;Name=CAL35493.1;Note=Original (2000) note: Cj1381%2C probable lipoprotein%2Clen: 176 aa%3B no Hp match. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1381;product=putative lipoprotein;protein_id=CAL35493.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1320295	1320363	.	+	.	ID=id-Cj1381;Note=1 probable transmembrane helix predicted for Cj1381 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1381
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1320301	1320333	.	+	.	ID=id-Cj1381-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1381
gi|15791399|ref|NC_002163.1|	EMBL	gene	1320852	1321343	.	-	.	ID=gene-Cj1382c;Name=fldA;gbkey=Gene;gene=fldA;gene_biotype=protein_coding;locus_tag=Cj1382c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1320852	1321343	.	-	0	ID=cds-CAL35494.1;Parent=gene-Cj1382c;Dbxref=EnsemblGenomes-Gn:Cj1382c,EnsemblGenomes-Tr:CAL35494,GOA:Q0P8M7,InterPro:IPR001094,InterPro:IPR001226,InterPro:IPR008254,InterPro:IPR010086,InterPro:IPR029039,UniProtKB/TrEMBL:Q0P8M7,NCBI_GP:CAL35494.1;Name=CAL35494.1;Note=Original (2000) note: Cj1382c%2C fldA%2C flavodoxin%2Clen: 163 aa%3B similar to many e.g. FLAV_ECOLI flavodoxin 1 (175 aa)%2C fasta scores%3B opt: 405 z-score: 485.7 E(): 9.3e-20%2C 40.3%25 identity in 159 aa overlap. 41.1%25 identity to HP1161. Contains PS00201 Flavodoxin signature%2C PS00017 ATP/GTP-binding site motif A (P-loop)%2C and Pfam match to entry PF00258 flavodoxin%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:9416602%2C PMID:9730838;gbkey=CDS;gene=fldA;inference=protein motif:Prosite:PS00201;locus_tag=Cj1382c;product=flavodoxin;protein_id=CAL35494.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1320882	1321331	.	-	.	ID=id-Cj1382c;Note=HMMPfam hit to PF00258%2C Flavodoxin%2C score 6.8e-43;gbkey=misc_feature;gene=fldA;inference=protein motif:Pfam:PF00258;locus_tag=Cj1382c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1321113	1321136	.	-	.	ID=id-Cj1382c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=fldA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1382c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1321281	1321331	.	-	.	ID=id-Cj1382c-3;Note=PS00201 Flavodoxin signature;gbkey=misc_feature;gene=fldA;inference=protein motif:Prosite:PS00201;locus_tag=Cj1382c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1321343	1322038	.	-	.	ID=gene-Cj1383c;Name=Cj1383c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1383c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1321343	1322038	.	-	0	ID=cds-CAL35495.1;Parent=gene-Cj1383c;Dbxref=EnsemblGenomes-Gn:Cj1383c,EnsemblGenomes-Tr:CAL35495,UniProtKB/TrEMBL:Q0P8M6,NCBI_GP:CAL35495.1;Name=CAL35495.1;Note=Original (2000) note: Cj1383c%2C unknown%2C len: 231 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Literature search identified paper giving further clues to product function. Functional classification - Unknown%3B~PMID:15231804;gbkey=CDS;locus_tag=Cj1383c;product=hypothetical protein Cj1383c;protein_id=CAL35495.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1322041	1322355	.	-	.	ID=gene-Cj1384c;Name=Cj1384c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1384c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1322041	1322355	.	-	0	ID=cds-CAL35496.1;Parent=gene-Cj1384c;Dbxref=EnsemblGenomes-Gn:Cj1384c,EnsemblGenomes-Tr:CAL35496,InterPro:IPR016772,UniProtKB/TrEMBL:Q0P8M5,NCBI_GP:CAL35496.1;Name=CAL35496.1;Note=Original (2000) note: Cj1384c%2C unknown%2C len: 104 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Literature search identified paper giving further clues to product function. Functional classification - Unknown%3B~PMID:15231804;gbkey=CDS;locus_tag=Cj1384c;product=hypothetical protein Cj1384c;protein_id=CAL35496.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1322526	1323950	.	+	.	ID=gene-Cj1385;Name=katA;gbkey=Gene;gene=katA;gene_biotype=protein_coding;locus_tag=Cj1385
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1322526	1323950	.	+	0	ID=cds-CAL35497.1;Parent=gene-Cj1385;Dbxref=EnsemblGenomes-Gn:Cj1385,EnsemblGenomes-Tr:CAL35497,GOA:Q59296,InterPro:IPR002226,InterPro:IPR010582,InterPro:IPR011614,InterPro:IPR018028,InterPro:IPR020835,InterPro:IPR024711,NCBI_GP:CAL35497.1;Name=CAL35497.1;Note=Original (2000) note: Cj1385%2C katA%2C catalase%2C len: 474 aa%3B 98.5%25 identical to TR:Q59296 (EMBL:X85130) C. jejuni catalase (EC 1.11.1.6) (507 aa)%2C and similar to e.g. CATA_BRUAB catalase (498 aa)%2C fasta scores%3B opt: 2093 z-score: 2432.5 E(): 0%2C 65.6%25 identity in 474 aa overlap. 56.1%25 identity to HP0875. Contains PS00437 Catalase proximal heme-ligand signature%2C and Pfam match to entry PF00199 catalase%3B~Updated (2006) note: Characterised within Campylobacter jejuni%2C so putative not added to product function. Functional classification - Detoxification%3B~PMID:7670638;gbkey=CDS;gene=katA;inference=protein motif:Prosite:PS00437;locus_tag=Cj1385;product=catalase;protein_id=CAL35497.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1322538	1323689	.	+	.	ID=id-Cj1385;Note=HMMPfam hit to PF00199%2C Catalase%2C score 4.1e-259;gbkey=misc_feature;gene=katA;inference=protein motif:Pfam:PF00199;locus_tag=Cj1385
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1323513	1323539	.	+	.	ID=id-Cj1385-2;Note=PS00437 Catalase proximal heme-ligand signature;gbkey=misc_feature;gene=katA;inference=protein motif:Prosite:PS00437;locus_tag=Cj1385
gi|15791399|ref|NC_002163.1|	EMBL	gene	1324007	1324477	.	+	.	ID=gene-Cj1386;Name=Cj1386;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1386
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1324007	1324477	.	+	0	ID=cds-CAL35498.1;Parent=gene-Cj1386;Dbxref=EnsemblGenomes-Gn:Cj1386,EnsemblGenomes-Tr:CAL35498,InterPro:IPR002110,InterPro:IPR020683,UniProtKB/TrEMBL:Q0P8M3,NCBI_GP:CAL35498.1;Name=CAL35498.1;Note=Original (2000) note: Cj1386%2C ankyrin-repeat containing protein%2C len: 412 aa%3B similar to proteins downstream of catalase in Pseudomonads e.g. TR:P95546 (EMBL:U16026) Pseudomonas syringae ANKF precursor (183 aa)%2C fasta scores%3B opt: 217 z-score: 286.8 E(): 1.2e-08%2C31.3%25 identity in 134 aa overlap%2C and to eukaryotic ankyrin proteins e.g. ANK1_MOUSE ankyrin (1862 aa)%2C fasta scores%3B opt: 181 z-score: 226.3 E(): 2.8e-05%2C 29.1%25 identity in 117 aa overlap. No Hp match. Also similar to Cj0834c (29.3%25 identity in 99 aa overlap). Contains 2x Pfam match to entry PF00023 ank%2C Ank repeat%3B~Updated (2006) note: Literature search identified paper giving further clues to product function. Functional classification - Misc%3B~PMID:15632442;gbkey=CDS;inference=protein motif:Pfam:PF00023;locus_tag=Cj1386;product=ankyrin-repeat containing protein;protein_id=CAL35498.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1324145	1324243	.	+	.	ID=id-Cj1386;Note=HMMPfam hit to PF00023%2C Ankyrin repeat%2C score 6.5e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF00023;locus_tag=Cj1386
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1324244	1324342	.	+	.	ID=id-Cj1386-2;Note=HMMPfam hit to PF00023%2C Ankyrin repeat%2C score 0.0047;gbkey=misc_feature;inference=protein motif:Pfam:PF00023;locus_tag=Cj1386
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1324343	1324441	.	+	.	ID=id-Cj1386-3;Note=HMMPfam hit to PF00023%2C Ankyrin repeat%2C score 7.4;gbkey=misc_feature;inference=protein motif:Pfam:PF00023;locus_tag=Cj1386
gi|15791399|ref|NC_002163.1|	EMBL	gene	1324478	1325134	.	-	.	ID=gene-Cj1387c;Name=Cj1387c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1387c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1324478	1325134	.	-	0	ID=cds-CAL35499.1;Parent=gene-Cj1387c;Dbxref=EnsemblGenomes-Gn:Cj1387c,EnsemblGenomes-Tr:CAL35499,InterPro:IPR013559,UniProtKB/TrEMBL:Q0P8M2,NCBI_GP:CAL35499.1;Name=CAL35499.1;Note=Original (2000) note: Cj1387c%2C unknown%2C len: 218 aa%3B similar to hypothetical proteins e.g. YHEO_ECOLI (240 aa)%2C fasta scores%3B opt: 164 z-score: 202.0 E(): 0.00063%2C29.4%25 identity in 204 aa overlap. No Hp match. Contains probable helix-turn-helix motif at aa 194-215 (Score 1100%2C+2.93 SD). Functional classification - Broad regulatory functions;gbkey=CDS;locus_tag=Cj1387c;product=helix-turn-helix containing protein;protein_id=CAL35499.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1325302	1325664	.	+	.	ID=gene-Cj1388;Name=Cj1388;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1388
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1325302	1325664	.	+	0	ID=cds-CAL35500.1;Parent=gene-Cj1388;Dbxref=EnsemblGenomes-Gn:Cj1388,EnsemblGenomes-Tr:CAL35500,GOA:Q0P8M1,InterPro:IPR006056,InterPro:IPR006175,InterPro:IPR013813,InterPro:IPR019897,UniProtKB/TrEMBL:Q0P8M1,NCBI_GP:CAL35500.1;Name=CAL35500.1;Note=Original (2000) note: Cj1388%2C unknown%2C len: 120 aa%3B similar to prokaryotic hypothetical proteins e.g. YA28_PYRHO Pyrococcus horikoshii PHAL028 (137 aa)%2C fasta scores%3B opt: 399 z-score: 503.4 E(): 1e-20%2C 53.8%25 identity in 117 aa overlap%2C and to e.g. UK14_HUMAN 14.5 KD translational inhibitor protein (137 aa)%2C fasta scores%3B opt: 384 z-score: 485.1 E(): 1.1e-19%2C 48.3%25 identity in 116 aa overlap. 53.0%25 identity to HP0944. Also similar to Cj0327 (34.4%25 identity in 96 aa overlap). Contains Pfam match to entry PF01042 DUF10%2C Domain of unknown function%3B~Updated (2006) note: Pfam domain PF01042 Endoribonuclease L-PSP identified within CDS. This domain is found in endoribonucleases%2C which are active on single-stranded mRNA and inhibit protein synthesis by cleavage of mRNA. Product modified to more specific family member based on motif results. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Pfam:PF01042;locus_tag=Cj1388;product=putative endoribonuclease L-PSP;protein_id=CAL35500.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1325302	1325658	.	+	.	ID=id-Cj1388;Note=HMMPfam hit to PF01042%2C Endoribonuclease L-PSP%2Cscore 1.6e-56;gbkey=misc_feature;inference=protein motif:Pfam:PF01042;locus_tag=Cj1388
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1325584	1325646	.	+	.	ID=id-Cj1388-2;Note=PS01094 Uncharacterized protein family UPF0076 signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01094;locus_tag=Cj1388
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	1325668	1326117	.	+	.	ID=gene-Cj1389;Name=Cj1389;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj1389;part=1/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	1326120	1327107	.	+	.	ID=gene-Cj1389;Name=Cj1389;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj1389;part=2/2;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1325668	1326117	.	+	0	ID=cds-Cj1389;Parent=gene-Cj1389;Dbxref=PSEUDO:CAL35501.1;Note=Original (2000) note: Cj1389%2C probable transmembrane transport protein pseudogene%2C len: 1437 bp%3B similar to e.g. YHCL_ECOLI hypothetical transport protein (455 aa) (approx 45%25 identity)%2C and DCUC_ECOLI C4-dicarboxylate anaerobic carrier (461 aa) (approx 31%25 identity). No Hp match%3B~Updated (2006) note: Pfam domain PF03606 C4-dicarboxylate anaerobic carrier identified within CDS. Also%2C twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Some characterisation work has been carried out within Escherichia coli with acceptable identity score%2C however%2Coriginal designation was putative. Thus%2C putative kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:10525738;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1389;product=pseudogene (putative C4-dicarboxylate anaerobic carrier);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1326120	1326567	.	+	0	ID=cds-Cj1389;Parent=gene-Cj1389;Dbxref=PSEUDO:CAL35501.1;Note=Original (2000) note: Cj1389%2C probable transmembrane transport protein pseudogene%2C len: 1437 bp%3B similar to e.g. YHCL_ECOLI hypothetical transport protein (455 aa) (approx 45%25 identity)%2C and DCUC_ECOLI C4-dicarboxylate anaerobic carrier (461 aa) (approx 31%25 identity). No Hp match%3B~Updated (2006) note: Pfam domain PF03606 C4-dicarboxylate anaerobic carrier identified within CDS. Also%2C twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Some characterisation work has been carried out within Escherichia coli with acceptable identity score%2C however%2Coriginal designation was putative. Thus%2C putative kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:10525738;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1389;product=pseudogene (putative C4-dicarboxylate anaerobic carrier);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1326566	1327107	.	+	2	ID=cds-Cj1389;Parent=gene-Cj1389;Dbxref=PSEUDO:CAL35501.1;Note=Original (2000) note: Cj1389%2C probable transmembrane transport protein pseudogene%2C len: 1437 bp%3B similar to e.g. YHCL_ECOLI hypothetical transport protein (455 aa) (approx 45%25 identity)%2C and DCUC_ECOLI C4-dicarboxylate anaerobic carrier (461 aa) (approx 31%25 identity). No Hp match%3B~Updated (2006) note: Pfam domain PF03606 C4-dicarboxylate anaerobic carrier identified within CDS. Also%2C twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Some characterisation work has been carried out within Escherichia coli with acceptable identity score%2C however%2Coriginal designation was putative. Thus%2C putative kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification -Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:10525738;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1389;product=pseudogene (putative C4-dicarboxylate anaerobic carrier);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1325671	1326117	.	+	.	ID=id-Cj1389;Note=HMMPfam hit to PF03606%2C C4-dicarboxylate anaerobic carrier%2C score 2.1e-56;gbkey=misc_feature;inference=protein motif:Pfam:PF03606;is_ordered=true;locus_tag=Cj1389;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1326120	1326566	.	+	.	ID=id-Cj1389;Note=HMMPfam hit to PF03606%2C C4-dicarboxylate anaerobic carrier%2C score 2.1e-56;gbkey=misc_feature;inference=protein motif:Pfam:PF03606;is_ordered=true;locus_tag=Cj1389;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1326567	1327104	.	+	.	ID=id-Cj1389;Note=HMMPfam hit to PF03606%2C C4-dicarboxylate anaerobic carrier%2C score 2.1e-56;gbkey=misc_feature;inference=protein motif:Pfam:PF03606;is_ordered=true;locus_tag=Cj1389;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1325677	1325724	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=1/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1325743	1325811	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=2/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1325869	1325937	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=3/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1325995	1326063	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=4/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1326076	1326117	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=5/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1326120	1326146	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=6/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1326240	1326308	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=7/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1326429	1326497	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=8/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1326558	1326566	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=9/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1326567	1326618	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=10/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1326676	1326744	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=11/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1326781	1326849	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=12/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1326946	1327014	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=13/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1327033	1327101	.	+	.	ID=id-Cj1389-2;Note=12 probable transmembrane helices predicted for Cj1389 by TMHMM2.0 at aa 4-19%2C 26-48%2C 68-90%2C 110-132%2C137-159%2C 191-213%2C 254-276%2C 297-317%2C 337-359%2C 372-394%2C427-449 and 456-478;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1389;part=14/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1327120	1327257	.	+	.	ID=gene-Cj1392;Name=metC';gbkey=Gene;gene=metC';gene_biotype=protein_coding;locus_tag=Cj1392
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1327120	1327257	.	+	0	ID=cds-CAL35502.1;Parent=gene-Cj1392;Dbxref=EnsemblGenomes-Gn:Cj1392,EnsemblGenomes-Tr:CAL35502,GOA:Q0P8M0,UniProtKB/TrEMBL:Q0P8M0,NCBI_GP:CAL35502.1;Name=CAL35502.1;Note=Original (2000) note: Cj1392%2C metC'%2C probable cystathionine beta-lyase%2C N-terminus%2C len: 348 aa%3B similar to many e.g. METC_HAEIN cystathionine beta-lyase (EC 4.4.1.8) (396 aa)%2C fasta scores%3B opt: 88 z-score: 151.7 E(): 0.4%2C 45.2%25 identity in 42 aa overlap. No Hp match. Note that the rest of metC is in the downstream ORF Cj1393. This may represent a pseudogene fragment%2C or possibly programmed ribosomal frameshifting%3B~Updated (2006) note: Gene names for Cj1392 and Cj1393 are identical with a ' denoting two separate terminals for the same CDS. May well be a pseudogene. Putative kept within product function. Functional classification - Amino acid biosynthesis - Aspartate family%3B~PMID:8831789;gbkey=CDS;gene=metC';locus_tag=Cj1392;product=putative cystathionine beta-lyase%2C N-terminus;protein_id=CAL35502.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1327236	1328282	.	+	.	ID=gene-Cj1393;Name=metC';gbkey=Gene;gene=metC';gene_biotype=protein_coding;locus_tag=Cj1393
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1327236	1328282	.	+	0	ID=cds-CAL35503.1;Parent=gene-Cj1393;Dbxref=EnsemblGenomes-Gn:Cj1393,EnsemblGenomes-Tr:CAL35503,GOA:Q0P8L9,InterPro:IPR000277,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0P8L9,NCBI_GP:CAL35503.1;Name=CAL35503.1;Note=Original (2000) note: Cj1393%2C metC'%2C probable cystathionine beta-lyase%2C len: 348 aa%3B similar to many e.g. METC_ECOLI cystathionine beta-lyase (EC 4.4.1.8) (395 aa)%2C fasta scores%3B opt: 802 z-score: 979.2 E(): 0%2C 35.6%25 identity in 354 aa overlap. 36.2%25 identity to HP0106. Also similar to Cj1727c%2C 30.0%25 identity in 363 aa overlap. Contains PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site%2C and Pfam match to entry PF01053 Cys_Met_Meta_PP%2C Gamma-family of PLP-dependent enzymes. Note that the N-terminal 50 aa of the protein appear to be in the upstream ORF Cj1392. This may represent a pseudogene fragment%2C or possibly programmed ribosomal frameshifting%3B~Updated (2006) note: Gene names for Cj1392 and Cj1393 are identical with a ' denoting two separate terminals for the same CDS. May well be a pseudogene. Putative kept in product function. Functional classification - Amino acid biosynthesis - Aspartate family%3B~PMID:8831789;gbkey=CDS;gene=metC';inference=protein motif:Prosite:PS00868;locus_tag=Cj1393;product=putative cystathionine beta-lyase;protein_id=CAL35503.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1327248	1328267	.	+	.	ID=id-Cj1393;Note=HMMPfam hit to PF01053%2C Cys/Met metabolism PLP-dependent enzy%2C score 5.3e-97;gbkey=misc_feature;gene=metC';inference=protein motif:Pfam:PF01053;locus_tag=Cj1393
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1327710	1327754	.	+	.	ID=id-Cj1393-2;Note=PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site;gbkey=misc_feature;gene=metC';inference=protein motif:Prosite:PS00868;locus_tag=Cj1393
gi|15791399|ref|NC_002163.1|	EMBL	gene	1328292	1329659	.	+	.	ID=gene-Cj1394;Name=Cj1394;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1394
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1328292	1329659	.	+	0	ID=cds-CAL35504.1;Parent=gene-Cj1394;Dbxref=EnsemblGenomes-Gn:Cj1394,EnsemblGenomes-Tr:CAL35504,GOA:Q0P8L8,InterPro:IPR000362,InterPro:IPR004769,InterPro:IPR008948,InterPro:IPR019468,InterPro:IPR020557,InterPro:IPR022761,InterPro:IPR024083,UniProtKB/TrEMBL:Q0P8L8,NCBI_GP:CAL35504.1;Name=CAL35504.1;Note=Original (2000) note: Cj1394%2C probable fumarate lyase%2C len: 455 aa%3B similar to e.g. PUR8_BACSU adenylosuccinate lyase (431 aa)%2C fasta scores%3B opt: 727 z-score: 829.8 E(): 0%2C 33.3%25 identity in 423 aa overlap%2Cand PCAB_PSEPU 3-carboxy-cis%2Ccis-muconate cycloisomerase (407 aa)%2C fasta scores%3B opt: 721 z-score: 823.4 E(): 0%2C32.8%25 identity in 399 aa overlap. No Hp ortholog. Also similar to Cj0023 purB (30.2%25 identity in 440 aa overlap). Contains PS00163 Fumarate lyases signature%2C and Pfam match to entry PF00206 lyase_1%2C Lyases%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Prosite:PS00163;locus_tag=Cj1394;product=putative fumarate lyase;protein_id=CAL35504.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1328331	1329206	.	+	.	ID=id-Cj1394;Note=HMMPfam hit to PF00206%2C Lyase%2C score 2.2e-28;gbkey=misc_feature;inference=protein motif:Pfam:PF00206;locus_tag=Cj1394
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1329123	1329152	.	+	.	ID=id-Cj1394-2;Note=PS00163 Fumarate lyases signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00163;locus_tag=Cj1394
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1329561	1329596	.	+	.	ID=id-Cj1394-3;Note=PS00962 Ribosomal protein S2 signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00962;locus_tag=Cj1394
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	1329668	1331008	.	+	.	ID=gene-Cj1395;Name=Cj1395;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Cj1395;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1329668	1331008	.	+	0	ID=cds-Cj1395;Parent=gene-Cj1395;Note=Original (2000) note: Cj1395%2C possible pseudogene%2Clen: 1338 bp%3B similar to hypothetical proteins e.g. YXEQ_BACSU (445 aa) (approx 25%25 identity)%2C and IRG1_MOUSE immune-responsive protein 1 (fragment) (646 aa) (approx 30%25 identity). No Hp match%3B~Updated (2006) note: Pfam domain PF03972 MmgE/PrpD family identified within CDS. Further support given to product function. No specific characterisation has been carried out with acceptable identity scores yet. Thus%2Cputative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF03972;locus_tag=Cj1395;product=pseudogene (putative MmgE/PrpD family protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1329668	1330993	.	+	.	ID=id-Cj1395;Note=HMMPfam hit to PF03972%2C MmgE/PrpD family%2C score 6.2e-57;gbkey=misc_feature;inference=protein motif:Pfam:PF03972;locus_tag=Cj1395
gi|15791399|ref|NC_002163.1|	EMBL	gene	1331090	1331314	.	+	.	ID=gene-Cj1397;Name=Cj1397;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1397
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1331090	1331314	.	+	0	ID=cds-CAL35506.1;Parent=gene-Cj1397;Dbxref=EnsemblGenomes-Gn:Cj1397,EnsemblGenomes-Tr:CAL35506,GOA:Q9PMR0,InterPro:IPR007167,InterPro:IPR008988,NCBI_GP:CAL35506.1;Name=CAL35506.1;Note=Original (2000) note: Cj1397%2C unknown%2C len: 74 aa%3B similar to hypothetical proteins e.g. TR:AAD06110 (EMBL:AE001486) H. pylori J99 JHP0533 (78 aa)%2C fasta scores%3B opt: 143 z-score: 219.1 E(): 6.9e-05%2C 41.2%25 identity in 68 aa overlap%2C and TR:P73181 (EMBL:D90904) Synechocystis sp. ssr2333 (79 aa)%2C fasta scores%3B opt: 94 z-score: 151.5 E(): 0.41%2C 28.6%25 identity in 77 aa overlap. Not predicted in TIGR Hp%2C but 38.8%25 identity to c(615977..616192)%3B~Updated (2006) note: Pfam domain PF04023 FeoA domain identified within CDS. This family of protein is thought to be involved in Fe2+ transport. Product modified to more specific family member based on motif search result. No characterisation has been carried out yet%2C so putative kept in product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:8407793;gbkey=CDS;inference=protein motif:Pfam:PF04023;locus_tag=Cj1397;product=putative ferrous iron transport protein;protein_id=CAL35506.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1331090	1331308	.	+	.	ID=id-Cj1397;Note=HMMPfam hit to PF04023%2C FeoA domain%2C score 1.4e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF04023;locus_tag=Cj1397
gi|15791399|ref|NC_002163.1|	EMBL	gene	1331311	1333152	.	+	.	ID=gene-Cj1398;Name=feoB;gbkey=Gene;gene=feoB;gene_biotype=protein_coding;locus_tag=Cj1398
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1331311	1333152	.	+	0	ID=cds-CAL35507.1;Parent=gene-Cj1398;Dbxref=EnsemblGenomes-Gn:Cj1398,EnsemblGenomes-Tr:CAL35507,GOA:Q9PMQ9,InterPro:IPR003373,InterPro:IPR005225,InterPro:IPR006073,InterPro:IPR011640,InterPro:IPR011642,InterPro:IPR027417,NCBI_GP:CAL35507.1;Name=CAL35507.1;Note=Original (2000) note: Cj1398%2C feoB%2C probable ferrous iron transport protein%2C len: 613 aa%3B similar to many e.g. FEOB_ECOLI ferrous iron transport protein B (773 aa)%2C fasta scores%3B opt: 726 z-score: 805.2 E(): 0%2C 29.3%25 identity in 726 aa overlap. 50.5%25 identity to HP0687. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domains PF01926 GTPase of unknown function%2C PF02421 Ferrous iron transport protein B%2C PF07670 Nucleoside recognition%2C PF07664 Ferrous iron transport protein B C terminus and PF07670 Nucleoside recognition were all identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Some characterisation work within Campylobacter jejuni and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification -Transport/binding proteins - Cations%3B~PMID:14735223%2C PMID:12446835;gbkey=CDS;gene=feoB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1398;product=ferrous iron transport protein;protein_id=CAL35507.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1331320	1331667	.	+	.	ID=id-Cj1398;Note=HMMPfam hit to PF01926%2C GTPase of unknown function%2Cscore 1.4e-33;gbkey=misc_feature;gene=feoB;inference=protein motif:Pfam:PF01926;locus_tag=Cj1398
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1331338	1331361	.	+	.	ID=id-Cj1398-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=feoB;inference=protein motif:Prosite:PS00017;locus_tag=Cj1398
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1331764	1332147	.	+	.	ID=id-Cj1398-3;Note=HMMPfam hit to PF02421%2C Ferrous iron transport protein B%2C score 1.9e-46;gbkey=misc_feature;gene=feoB;inference=protein motif:Pfam:PF02421;locus_tag=Cj1398
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1331956	1332024	.	+	.	ID=id-Cj1398-4;Note=10 probable transmembrane helices predicted for Cj1398 by TMHMM2.0 at aa 216-238%2C 266-288%2C 290-312%2C327-344%2C 357-379%2C 389-407%2C 449-466%2C 510-532%2C 553-575 and 585-607;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1398;part=1/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332106	1332174	.	+	.	ID=id-Cj1398-4;Note=10 probable transmembrane helices predicted for Cj1398 by TMHMM2.0 at aa 216-238%2C 266-288%2C 290-312%2C327-344%2C 357-379%2C 389-407%2C 449-466%2C 510-532%2C 553-575 and 585-607;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1398;part=2/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332178	1332246	.	+	.	ID=id-Cj1398-4;Note=10 probable transmembrane helices predicted for Cj1398 by TMHMM2.0 at aa 216-238%2C 266-288%2C 290-312%2C327-344%2C 357-379%2C 389-407%2C 449-466%2C 510-532%2C 553-575 and 585-607;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1398;part=3/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332289	1332342	.	+	.	ID=id-Cj1398-4;Note=10 probable transmembrane helices predicted for Cj1398 by TMHMM2.0 at aa 216-238%2C 266-288%2C 290-312%2C327-344%2C 357-379%2C 389-407%2C 449-466%2C 510-532%2C 553-575 and 585-607;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1398;part=4/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332379	1332447	.	+	.	ID=id-Cj1398-4;Note=10 probable transmembrane helices predicted for Cj1398 by TMHMM2.0 at aa 216-238%2C 266-288%2C 290-312%2C327-344%2C 357-379%2C 389-407%2C 449-466%2C 510-532%2C 553-575 and 585-607;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1398;part=5/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332475	1332531	.	+	.	ID=id-Cj1398-4;Note=10 probable transmembrane helices predicted for Cj1398 by TMHMM2.0 at aa 216-238%2C 266-288%2C 290-312%2C327-344%2C 357-379%2C 389-407%2C 449-466%2C 510-532%2C 553-575 and 585-607;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1398;part=6/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332655	1332708	.	+	.	ID=id-Cj1398-4;Note=10 probable transmembrane helices predicted for Cj1398 by TMHMM2.0 at aa 216-238%2C 266-288%2C 290-312%2C327-344%2C 357-379%2C 389-407%2C 449-466%2C 510-532%2C 553-575 and 585-607;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1398;part=7/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332838	1332906	.	+	.	ID=id-Cj1398-4;Note=10 probable transmembrane helices predicted for Cj1398 by TMHMM2.0 at aa 216-238%2C 266-288%2C 290-312%2C327-344%2C 357-379%2C 389-407%2C 449-466%2C 510-532%2C 553-575 and 585-607;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1398;part=8/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332967	1333035	.	+	.	ID=id-Cj1398-4;Note=10 probable transmembrane helices predicted for Cj1398 by TMHMM2.0 at aa 216-238%2C 266-288%2C 290-312%2C327-344%2C 357-379%2C 389-407%2C 449-466%2C 510-532%2C 553-575 and 585-607;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1398;part=9/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1333063	1333131	.	+	.	ID=id-Cj1398-4;Note=10 probable transmembrane helices predicted for Cj1398 by TMHMM2.0 at aa 216-238%2C 266-288%2C 290-312%2C327-344%2C 357-379%2C 389-407%2C 449-466%2C 510-532%2C 553-575 and 585-607;gbkey=misc_feature;gene=feoB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1398;part=10/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332157	1332450	.	+	.	ID=id-Cj1398-5;Note=HMMPfam hit to PF07670%2C Nucleoside recognition%2Cscore 2.1e-12;gbkey=misc_feature;gene=feoB;inference=protein motif:Pfam:PF07670;locus_tag=Cj1398
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332286	1332318	.	+	.	ID=id-Cj1398-6;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=feoB;inference=protein motif:Prosite:PS00013;locus_tag=Cj1398
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332472	1332633	.	+	.	ID=id-Cj1398-7;Note=HMMPfam hit to PF07664%2C Ferrous iron transport protein B C terminus%2C score 4.8e-21;gbkey=misc_feature;gene=feoB;inference=protein motif:Pfam:PF07664;locus_tag=Cj1398
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1332646	1333062	.	+	.	ID=id-Cj1398-8;Note=HMMPfam hit to PF07670%2C Nucleoside recognition%2Cscore 4.1e-19;gbkey=misc_feature;gene=feoB;inference=protein motif:Pfam:PF07670;locus_tag=Cj1398
gi|15791399|ref|NC_002163.1|	EMBL	gene	1333149	1334642	.	-	.	ID=gene-Cj1399c;Name=hydA2;gbkey=Gene;gene=hydA2;gene_biotype=protein_coding;locus_tag=Cj1399c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1333149	1334642	.	-	0	ID=cds-CAL35508.1;Parent=gene-Cj1399c;Dbxref=EnsemblGenomes-Gn:Cj1399c,EnsemblGenomes-Tr:CAL35508,GOA:Q0P8L5,InterPro:IPR001821,InterPro:IPR006137,InterPro:IPR027394,UniProtKB/TrEMBL:Q0P8L5,NCBI_GP:CAL35508.1;Name=CAL35508.1;Note=Original (2000) note: Cj1399c%2C hydA2%2C probable Ni/Fe-hydrogenase small subunit%2C len: 497 aa%3B similar to e.g. MBHS_WOLSU quinone-reactive Ni/Fe-hydrogenase small chain (354 aa)%2C fasta scores%3B opt: 1122 z-score: 1317.8 E(): 0%2C 52.6%25 identity in 285 aa overlap. No Hp ortholog. Also similar to Cj1267c (51.5%25 identity in 330 aa overlap). Contains C-terminal extension not present in other hydrogenase small subunits%3B~Updated (2006) note: Pfam domain PF01058 NADH ubiquinone oxidoreductase%2C 20 Kd subunit identified within CDS. Further support given to product function. Characterised within Wolinella succinogenes%2C however%2Csequence alignment was only partial. Thus%2C putative kept within product function. Functional classification -Energy metabolism - Respiration%3B~PMID:1587288;gbkey=CDS;gene=hydA2;inference=protein motif:Pfam:PF01058;locus_tag=Cj1399c;product=putative Ni/Fe-hydrogenase small subunit;protein_id=CAL35508.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1333992	1334306	.	-	.	ID=id-Cj1399c;Note=HMMPfam hit to PF01058%2C NADH ubiquinone oxidoreductase%2C 20 Kd sub%2C score 6e-06;gbkey=misc_feature;gene=hydA2;inference=protein motif:Pfam:PF01058;locus_tag=Cj1399c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1334646	1335470	.	-	.	ID=gene-Cj1400c;Name=fabI;gbkey=Gene;gene=fabI;gene_biotype=protein_coding;locus_tag=Cj1400c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1334646	1335470	.	-	0	ID=cds-CAL35509.1;Parent=gene-Cj1400c;Dbxref=EnsemblGenomes-Gn:Cj1400c,EnsemblGenomes-Tr:CAL35509,GOA:Q0P8L4,InterPro:IPR002347,InterPro:IPR014358,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P8L4,NCBI_GP:CAL35509.1;Name=CAL35509.1;Note=Original (2000) note: Cj1400c%2C fabI%2C probable enoyl-[acyl-carrier-protein] reductase [NADH]%2C len: 274 aa%3B highly similar to many e.g. FABI_ECOLI enoyl-[acyl-carrier-protein] reductase [NADH] (EC 1.3.1.9)(261 aa)%2C fasta scores%3B opt: 789 z-score: 906.5 E(): 0%2C 47.1%25 identity in 257 aa overlap. 67.9%25 identity to HP0195. Also similar to Cj0807 (29.2%25 identity in 257 aa overlap)%2C Cj0485 (28.3%25 identity in 254 aa overlap)%2CCj1332 (25.4%25 identity in 244 aa overlap)%2C and Cj0435 (25.0%25 identity in 256 aa overlap). Contains Pfam match to entry PF00106 adh_short%2C Alcohol/other dehydrogenases%2Cshort chain type%2C and Pfam match to entry PF00678 adh_short_C2%2C Short chain dehydrogenase/reductase C-terminus%3B~Updated (2006) note: Characterised within Escherichia coli and Bacillus subtilis with acceptable identity scores. Putative removed from product function. Functional classification - Fatty acid biosynthesis%3B~PMID:12693936%2C PMID:9022698%2C PMID:11007778;gbkey=CDS;gene=fabI;inference=protein motif:Pfam:PF00678;locus_tag=Cj1400c;product=enoyl-[acyl-carrier-protein] reductase [NADH];protein_id=CAL35509.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1334724	1335446	.	-	.	ID=id-Cj1400c;Note=HMMPfam hit to PF00106%2C short chain dehydrogenase%2Cscore 4.6e-20;gbkey=misc_feature;gene=fabI;inference=protein motif:Pfam:PF00106;locus_tag=Cj1400c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1335474	1336145	.	-	.	ID=gene-Cj1401c;Name=tpiA;gbkey=Gene;gene=tpiA;gene_biotype=protein_coding;locus_tag=Cj1401c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1335474	1336145	.	-	0	ID=cds-CAL35510.1;Parent=gene-Cj1401c;Dbxref=EnsemblGenomes-Gn:Cj1401c,EnsemblGenomes-Tr:CAL35510,GOA:Q9PMQ6,InterPro:IPR000652,InterPro:IPR013785,InterPro:IPR020861,InterPro:IPR022896,NCBI_GP:CAL35510.1;Name=CAL35510.1;Note=Original (2000) note: Cj1401c%2C tpiA%2C probable triosephosphate isomerase%2C len: 223 aa%3B similar to many e.g. TPIS_MYCHR triosephosphate isomerase (EC 5.3.1.1) (TIM (243 aa)%2C fasta scores%3B opt: 377 z-score: 466.3 E(): 1.2e-18%2C 34.5%25 identity in 235 aa overlap. 48.2%25 identity to HP0194. Contains Pfam match to entry PF00121 TIM%2CTriosephosphate isomerase%3B~Updated (2006) note: Some characterisation work within Escherichi coli%2C however%2C identity score was marginal%2C so putative kept within product function. Functional classification - Energy metabolism -Glycolysis%3B~PMID:15299515;gbkey=CDS;gene=tpiA;inference=protein motif:Pfam:PF00121;locus_tag=Cj1401c;product=putative triosephosphate isomerase;protein_id=CAL35510.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1335480	1336142	.	-	.	ID=id-Cj1401c;Note=HMMPfam hit to PF00121%2C Triosephosphate isomerase%2Cscore 1.3e-29;gbkey=misc_feature;gene=tpiA;inference=protein motif:Pfam:PF00121;locus_tag=Cj1401c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1336142	1337344	.	-	.	ID=gene-Cj1402c;Name=pgk;gbkey=Gene;gene=pgk;gene_biotype=protein_coding;locus_tag=Cj1402c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1336142	1337344	.	-	0	ID=cds-CAL35511.1;Parent=gene-Cj1402c;Dbxref=EnsemblGenomes-Gn:Cj1402c,EnsemblGenomes-Tr:CAL35511,GOA:Q9PMQ5,InterPro:IPR001576,InterPro:IPR015824,InterPro:IPR015901,InterPro:IPR015911,PDB:3Q3V,NCBI_GP:CAL35511.1;Name=CAL35511.1;Note=Original (2000) note: Cj1402c%2C pgk%2Cphosphoglycerate kinase%2C len: 400 aa%3B similar to e.g. PGK_AQUAE phosphoglycerate kinase (EC 2.7.2.3) (397 aa)%2Cfasta scores%3B opt: 1417 z-score: 1610.9 E(): 0%2C 53.4%25 identity in 393 aa overlap%2C and PGKY_WHEAT phosphoglycerate kinase%2C cytosolic (401 aa)%2C fasta scores%3B opt: 1369 z-score: 1556.5 E(): 0%2C 53.1%25 identity in 392 aa overlap. 49.1%25 identity to HP1345. Contains PS00111 Phosphoglycerate kinase signature%2C and Pfam match to entry PF00162 PGK%2C Phosphoglycerate kinases%3B~Updated (2006) note: Characterisation work carried out in more than one genus with acceptable identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Energy metabolism -Glycolysis%3B~PMID:8021172;gbkey=CDS;gene=pgk;inference=protein motif:Prosite:PS00111;locus_tag=Cj1402c;product=phosphoglycerate kinase;protein_id=CAL35511.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1336151	1337341	.	-	.	ID=id-Cj1402c;Note=HMMPfam hit to PF00162%2C Phosphoglycerate kinase%2Cscore 1.6e-207;gbkey=misc_feature;gene=pgk;inference=protein motif:Pfam:PF00162;locus_tag=Cj1402c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1337267	1337299	.	-	.	ID=id-Cj1402c-2;Note=PS00111 Phosphoglycerate kinase signature;gbkey=misc_feature;gene=pgk;inference=protein motif:Prosite:PS00111;locus_tag=Cj1402c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1337347	1338345	.	-	.	ID=gene-Cj1403c;Name=gapA;gbkey=Gene;gene=gapA;gene_biotype=protein_coding;locus_tag=Cj1403c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1337347	1338345	.	-	0	ID=cds-CAL35512.1;Parent=gene-Cj1403c;Dbxref=EnsemblGenomes-Gn:Cj1403c,EnsemblGenomes-Tr:CAL35512,GOA:Q0P8L1,InterPro:IPR006424,InterPro:IPR016040,InterPro:IPR020828,InterPro:IPR020829,InterPro:IPR020830,InterPro:IPR020831,UniProtKB/TrEMBL:Q0P8L1,NCBI_GP:CAL35512.1;Name=CAL35512.1;Note=Original (2000) note: Cj1403c%2C gapA%2C glyceraldehyde 3-phosphate dehydrogenase%2C len: 332 aa%3B similar to e.g. G3P1_BACSU glyceraldehyde 3-phosphate dehydrogenase 1 (334 aa)%2C fasta scores%3B opt: 1070 z-score: 1216.4 E(): 0%2C 50.3%25 identity in 332 aa overlap. 45.6%25 identity to HP1346 and 46.7%25 identity to HP0921. Contains Pfam match to entry PF00044 gpdh%2C glyceraldehyde 3-phosphate dehydrogenases%2Cand PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site%3B~Updated (2006) note: Pfam domains PF02800 and PF00044 Glyceraldehyde 3-phosphate dehydrogenase%2CC-terminal and N-terminal were both identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Glycolysis%3B~PMID:10799476;gbkey=CDS;gene=gapA;inference=protein motif:Prosite:PS00071;locus_tag=Cj1403c;product=glyceraldehyde 3-phosphate dehydrogenase;protein_id=CAL35512.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1337413	1337895	.	-	.	ID=id-Cj1403c;Note=HMMPfam hit to PF02800%2C Glyceraldehyde 3-phosphate dehydrogenase%2C C-%2C score 7.5e-92;gbkey=misc_feature;gene=gapA;inference=protein motif:Pfam:PF02800;locus_tag=Cj1403c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1337881	1337904	.	-	.	ID=id-Cj1403c-2;Note=PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site;gbkey=misc_feature;gene=gapA;inference=protein motif:Prosite:PS00071;locus_tag=Cj1403c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1337896	1338339	.	-	.	ID=id-Cj1403c-3;Note=HMMPfam hit to PF00044%2C Glyceraldehyde 3-phosphate dehydrogenase%2C NA%2C score 1.2e-77;gbkey=misc_feature;gene=gapA;inference=protein motif:Pfam:PF00044;locus_tag=Cj1403c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1338404	1338949	.	+	.	ID=gene-Cj1404;Name=nadD;gbkey=Gene;gene=nadD;gene_biotype=protein_coding;locus_tag=Cj1404
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1338404	1338949	.	+	0	ID=cds-CAL35513.1;Parent=gene-Cj1404;Dbxref=EnsemblGenomes-Gn:Cj1404,EnsemblGenomes-Tr:CAL35513,GOA:Q9PMQ3,InterPro:IPR004821,InterPro:IPR005248,InterPro:IPR014729,NCBI_GP:CAL35513.1;Name=CAL35513.1;Note=Original (2000) note: Cj1404%2C unknown%2C len: 181 aa%3B similar to hypothetical proteins e.g. YQEJ_BACSU (189 aa)%2Cfasta scores%3B opt: 305 z-score: 391.3 E(): 1.8e-14%2C 30.2%25 identity in 182 aa overlap. 40.4%25 identity to HP1337%3B~Updated (2006) note: Pfam domain PF01467 Cytidylyltransferase identified within CDS. Product modified to more specific family member based on motif match. Characterised within Bacillus subtilis%2C however%2Cidentity scores were marginal. Thus%2C putative kept within product function. Functional classification - Misc%3B~PMID:11704676%2C PMID:16153292;gbkey=CDS;gene=nadD;inference=protein motif:Pfam:PF01467;locus_tag=Cj1404;product=putative nicotinate-nucleotide adenylyltransferase;protein_id=CAL35513.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1338416	1338874	.	+	.	ID=id-Cj1404;Note=HMMPfam hit to PF01467%2C Cytidylyltransferase%2C score 2.2e-24;gbkey=misc_feature;gene=nadD;inference=protein motif:Pfam:PF01467;locus_tag=Cj1404
gi|15791399|ref|NC_002163.1|	EMBL	gene	1338977	1339303	.	+	.	ID=gene-Cj1405;Name=Cj1405;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1405
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1338977	1339303	.	+	0	ID=cds-CAL35514.1;Parent=gene-Cj1405;Dbxref=EnsemblGenomes-Gn:Cj1405,EnsemblGenomes-Tr:CAL35514,GOA:Q0P8K9,InterPro:IPR004394,InterPro:IPR025656,UniProtKB/TrEMBL:Q0P8K9,NCBI_GP:CAL35514.1;Name=CAL35514.1;Note=Original (2000) note: Cj1405%2C unknown%2C len: 108 aa%3B similar to hypothetical proteins e.g. YBEB_ECOLI (105 aa)%2Cfasta scores%3B opt: 185 z-score: 245.5 E(): 2.4e-06%2C 28.1%25 identity in 96 aa overlap. 51.4%25 identity to HP1414%3B~Updated (2006) note: Pfam domain PF02410 Domain of unknown function DUF143 identified within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02410;locus_tag=Cj1405;product=conserved hypothetical protein Cj1405;protein_id=CAL35514.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1338980	1339279	.	+	.	ID=id-Cj1405;Note=HMMPfam hit to PF02410%2C Domain of unknown function DUF143%2C score 6.4e-28;gbkey=misc_feature;inference=protein motif:Pfam:PF02410;locus_tag=Cj1405
gi|15791399|ref|NC_002163.1|	EMBL	gene	1339362	1339712	.	-	.	ID=gene-Cj1406c;Name=Cj1406c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1406c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1339362	1339712	.	-	0	ID=cds-CAL35515.1;Parent=gene-Cj1406c;Dbxref=EnsemblGenomes-Gn:Cj1406c,EnsemblGenomes-Tr:CAL35515,InterPro:IPR009468,UniProtKB/TrEMBL:Q0P8K8,NCBI_GP:CAL35515.1;Name=CAL35515.1;Note=Original (2000) note: Cj1406c%2C probable periplasmic protein%2C len: 116 aa%3B similar to YQJC_ECOLI (predicted periplasmic protein) (127 aa)%2C fasta scores%3B opt: 160 z-score: 185.2 E(): 0.0054 32.4%25 identity in 111 aa overlap. No Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF06476 Protein of unknown function (DUF1090) identified within CDS. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Pfam:PF06476;locus_tag=Cj1406c;product=putative periplasmic protein;protein_id=CAL35515.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1339365	1339700	.	-	.	ID=id-Cj1406c;Note=HMMPfam hit to PF06476%2C Protein of unknown function (DUF1090)%2C score 4.6e-49;gbkey=misc_feature;inference=protein motif:Pfam:PF06476;locus_tag=Cj1406c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1339759	1341147	.	-	.	ID=gene-Cj1407c;Name=Cj1407c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1407c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1339759	1341147	.	-	0	ID=cds-CAL35516.1;Parent=gene-Cj1407c;Dbxref=EnsemblGenomes-Gn:Cj1407c,EnsemblGenomes-Tr:CAL35516,GOA:Q0P8K7,InterPro:IPR005841,InterPro:IPR005843,InterPro:IPR005844,InterPro:IPR005845,InterPro:IPR005846,InterPro:IPR016055,UniProtKB/TrEMBL:Q0P8K7,NCBI_GP:CAL35516.1;Name=CAL35516.1;Note=Original (2000) note: Cj1407c%2C probable phospho-sugar mutase%2C len: 462 aa%3B simial to e.g. ALGC_PSEAE phosphomannomutase (462 aa)%2C fasta scores%3B opt: 1037 z-score: 1216.2 E(): 0%2C 40.7%25 identity in 457 aa overlap%2C and PGMU_NEIGO phosphoglucomutase (460 aa)%2C fasta scores%3B opt: 884 z-score: 1037.2 E(): 0%2C 35.4%25 identity in 435 aa overlap. 44.7%25 identity to HP1275. Contains Pfam match to entry PF00408 PGM_PMM%2C Phosphoglucomutase and phosphomannomutase%2C and PS00017 ATP/GTP-binding site motif A (P-loop). Also similar to Cj0360 (28.8%25 identity in 386 aa overlap)%3B~Updated (2006) note: No specific characterisation with acceptable identity score identified. Putative kept within product function. Functional classification -Central intermediary metabolism - General%3B~PMID:11839312%2C PMID:8050998;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj1407c;product=putative phospho-sugar mutase;protein_id=CAL35516.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1339774	1340034	.	-	.	ID=id-Cj1407c;Note=HMMPfam hit to PF00408%2CPhosphoglucomutase/phosphomannomutase%2C C-%2C score 3.7e-09;gbkey=misc_feature;inference=protein motif:Pfam:PF00408;locus_tag=Cj1407c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1340044	1340364	.	-	.	ID=id-Cj1407c-2;Note=HMMPfam hit to PF02880%2CPhosphoglucomutase/phosphomannomutase%2C al%2C score 2e-16;gbkey=misc_feature;inference=protein motif:Pfam:PF02880;locus_tag=Cj1407c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1340236	1340259	.	-	.	ID=id-Cj1407c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1407c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1340365	1340676	.	-	.	ID=id-Cj1407c-4;Note=HMMPfam hit to PF02879%2CPhosphoglucomutase/phosphomannomutase%2C al%2C score 4.9e-23;gbkey=misc_feature;inference=protein motif:Pfam:PF02879;locus_tag=Cj1407c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1340704	1341123	.	-	.	ID=id-Cj1407c-5;Note=HMMPfam hit to PF02878%2CPhosphoglucomutase/phosphomannomutase%2C al%2C score 1.3e-42;gbkey=misc_feature;inference=protein motif:Pfam:PF02878;locus_tag=Cj1407c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1341250	1341786	.	+	.	ID=gene-Cj1408;Name=fliL;gbkey=Gene;gene=fliL;gene_biotype=protein_coding;locus_tag=Cj1408
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1341250	1341786	.	+	0	ID=cds-CAL35517.1;Parent=gene-Cj1408;Dbxref=EnsemblGenomes-Gn:Cj1408,EnsemblGenomes-Tr:CAL35517,GOA:Q0P8K6,InterPro:IPR005503,UniProtKB/TrEMBL:Q0P8K6,NCBI_GP:CAL35517.1;Name=CAL35517.1;Note=Original (2000) note: Cj1408%2C fliL%2C possible flagellar protein%2C len: 178 aa%3B some similarity to e.g. FLIL_BACSU flagellar FLIL protein (140 aa)%2C fasta scores%3B opt: 172 z-score: 211.7 E(): 0.00018%2C 26.3%25 identity in 156 aa overlap. 39.3%25 identity to HP0809. Contains probable transmembrane domain%3B~Updated (2006) note: Pfam domain PF03748 Flagellar basal body-associated protein FliL identified within CDS. Further support given to product function. Some characterisation work within Bacillus subtilis%2C however%2Cidentity score was marginal. Puatative kept within product function. Functional classification - Surface structures%3B~PMID:10439416%2C PMID:7932752;gbkey=CDS;gene=fliL;inference=protein motif:Pfam:PF03748;locus_tag=Cj1408;product=putative flagellar protein;protein_id=CAL35517.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1341295	1341783	.	+	.	ID=id-Cj1408;Note=HMMPfam hit to PF03748%2C Flagellar basal body-associated protein FliL%2C score 6.8e-64;gbkey=misc_feature;gene=fliL;inference=protein motif:Pfam:PF03748;locus_tag=Cj1408
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1341304	1341372	.	+	.	ID=id-Cj1408-2;Note=1 probable transmembrane helix predicted for Cj1408 by TMHMM2.0 at aa 19-41;gbkey=misc_feature;gene=fliL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1408
gi|15791399|ref|NC_002163.1|	EMBL	gene	1341786	1342133	.	+	.	ID=gene-Cj1409;Name=acpS;gbkey=Gene;gene=acpS;gene_biotype=protein_coding;locus_tag=Cj1409
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1341786	1342133	.	+	0	ID=cds-CAL35518.1;Parent=gene-Cj1409;Dbxref=EnsemblGenomes-Gn:Cj1409,EnsemblGenomes-Tr:CAL35518,GOA:Q9PMP8,InterPro:IPR002582,InterPro:IPR004568,InterPro:IPR008278,NCBI_GP:CAL35518.1;Name=CAL35518.1;Note=Original (2000) note: Cj1409%2C acpS%2C probable holo-[acyl-carrier protein] synthase%2C len: 115 aa%3B similar to e.g. ACPS_ECOLI holo-[acyl-carrier protein] synthase (EC 2.7.8.7) (125 aa)%2C fasta scores%3B opt: 170 z-score: 237.9 E(): 6.3e-06%2C 29.4%25 identity in 119 aa overlap. 51.3%25 identity to HP0808%3B~Updated (2006) note: Pfam domain PF01648 4'-phosphopantetheinyl transferase superfamily protein identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Fatty acid biosynthesis%3B~PMID:7559576%2C PMID:10625633%2C PMID:11489886%2CPMID:10997907;gbkey=CDS;gene=acpS;inference=protein motif:Pfam:PF01648;locus_tag=Cj1409;product=holo-[acyl-carrier protein] synthase;protein_id=CAL35518.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1341792	1341983	.	+	.	ID=id-Cj1409;Note=HMMPfam hit to PF01648%2C 4'-phosphopantetheinyl transferase superfami%2C score 1.4e-14;gbkey=misc_feature;gene=acpS;inference=protein motif:Pfam:PF01648;locus_tag=Cj1409
gi|15791399|ref|NC_002163.1|	EMBL	gene	1342134	1342553	.	-	.	ID=gene-Cj1410c;Name=Cj1410c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1410c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1342134	1342553	.	-	0	ID=cds-CAL35519.1;Parent=gene-Cj1410c;Dbxref=EnsemblGenomes-Gn:Cj1410c,EnsemblGenomes-Tr:CAL35519,UniProtKB/TrEMBL:Q0P8K4,NCBI_GP:CAL35519.1;Name=CAL35519.1;Note=Original (2000) note: Cj1410c%2C possible membrane protein%2C len: 139 aa%3B no Hp match. Contains hydrophobic domain and PS00041 Bacterial regulatory proteins%2C araC family signature. Functional classification - Membranes%2Clipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00041;locus_tag=Cj1410c;product=putative membrane protein;protein_id=CAL35519.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1342377	1342511	.	-	.	ID=id-Cj1410c;Note=PS00041 Bacterial regulatory proteins%2C araC family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00041;locus_tag=Cj1410c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1342389	1342457	.	-	.	ID=id-Cj1410c-2;Note=1 probable transmembrane helix predicted for Cj1410c by TMHMM2.0 at aa 33-55;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1410c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1342550	1343911	.	-	.	ID=gene-Cj1411c;Name=Cj1411c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1411c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1342550	1343911	.	-	0	ID=cds-CAL35520.1;Parent=gene-Cj1411c;Dbxref=EnsemblGenomes-Gn:Cj1411c,EnsemblGenomes-Tr:CAL35520,GOA:Q0P8K3,InterPro:IPR001128,InterPro:IPR002401,InterPro:IPR017972,UniProtKB/TrEMBL:Q0P8K3,NCBI_GP:CAL35520.1;Name=CAL35520.1;Note=Original (2000) note: Cj1411c%2C probable cytochrome P450%2C len: 453 aa%3B similar to many e.g. cytochrome P450 domain of CPXB_BACME cytochrome P450/NADPH-cytochrome P450 reductase (1048 aa)%2C fasta scores%3B opt: 505 z-score: 578.8 E(): 6.4e-25%2C 28.3%25 identity in 407 aa overlap. No Hp match. Contains PS00086 Cytochrome P450 cysteine heme-iron ligand signature%2C and Pfam match to entry PF00067 p450%2CCytochrome P450%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Energy metabolism - Electron transport%3B~PMID:9308178;gbkey=CDS;inference=protein motif:Prosite:PS00086;locus_tag=Cj1411c;product=putative cytochrome P450;protein_id=CAL35520.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1342568	1343890	.	-	.	ID=id-Cj1411c;Note=HMMPfam hit to PF00067%2C Cytochrome P450%2C score 4.3e-68;gbkey=misc_feature;inference=protein motif:Pfam:PF00067;locus_tag=Cj1411c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1342709	1342738	.	-	.	ID=id-Cj1411c-2;Note=PS00086 Cytochrome P450 cysteine heme-iron ligand signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00086;locus_tag=Cj1411c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1343908	1345029	.	-	.	ID=gene-Cj1412c;Name=Cj1412c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1412c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1343908	1345029	.	-	0	ID=cds-CAL35521.1;Parent=gene-Cj1412c;Dbxref=EnsemblGenomes-Gn:Cj1412c,EnsemblGenomes-Tr:CAL35521,UniProtKB/TrEMBL:Q0P8K2,NCBI_GP:CAL35521.1;Name=CAL35521.1;Note=Original (2000) note: Cj1412c%2C probable integral membrane protein%2C len: 373 aa%3B no Hp match%3B~Updated (2006) note: Three probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1412c;product=putative integral membrane protein;protein_id=CAL35521.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1343941	1344009	.	-	.	ID=id-Cj1412c;Note=3 probable transmembrane helices predicted for Cj1412c by TMHMM2.0 at aa 115-137%2C 142-164 and 341-363;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1412c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1344538	1344606	.	-	.	ID=id-Cj1412c;Note=3 probable transmembrane helices predicted for Cj1412c by TMHMM2.0 at aa 115-137%2C 142-164 and 341-363;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1412c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1344619	1344687	.	-	.	ID=id-Cj1412c;Note=3 probable transmembrane helices predicted for Cj1412c by TMHMM2.0 at aa 115-137%2C 142-164 and 341-363;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1412c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1344571	1344603	.	-	.	ID=id-Cj1412c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1412c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1345102	1346286	.	-	.	ID=gene-Cj1413c;Name=kpsS;gbkey=Gene;gene=kpsS;gene_biotype=protein_coding;locus_tag=Cj1413c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1345102	1346286	.	-	0	ID=cds-CAL35522.1;Parent=gene-Cj1413c;Dbxref=EnsemblGenomes-Gn:Cj1413c,EnsemblGenomes-Tr:CAL35522,GOA:Q0P8K1,InterPro:IPR007833,UniProtKB/TrEMBL:Q0P8K1,NCBI_GP:CAL35522.1;Name=CAL35522.1;Note=Original (2000) note: Cj1413c%2C possible polysaccharide modification protein%2C len: 394 aa%3B similar to e.g. LIPB_NEIME capsule polysaccharide modification protein (419 aa)%2C fasta scores%3B opt: 744 z-score: 897.9 E(): 0%2C 38.5%25 identity in 395 aa overlap%2C and KSS5_ECOLI capsule polysaccharide export protein KPSS (389 aa)%2C fasta scores%3B opt: 919 z-score: 1108.7 E(): 0%2C 40.2%25 identity in 383 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF05159 Capsule polysaccharide biosynthesis protein identified within CDS. Further support given to product function. Possible removed from product function as characterised within more than one genus with acceptable identity scores. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c -Cj1448c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:8326861%2C PMID:8397187%2C PMID:10672176;gbkey=CDS;gene=kpsS;inference=protein motif:Pfam:PF05159;locus_tag=Cj1413c;product=capsule polysaccharide modification protein;protein_id=CAL35522.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1345126	1346046	.	-	.	ID=id-Cj1413c;Note=HMMPfam hit to PF05159%2C Capsule polysaccharide biosynthesis pro%2C score 4.1e-137;gbkey=misc_feature;gene=kpsS;inference=protein motif:Pfam:PF05159;locus_tag=Cj1413c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1345750	1345818	.	-	.	ID=id-Cj1413c-2;Note=1 probable transmembrane helix predicted for Cj1413c by TMHMM2.0 at aa 157-179;gbkey=misc_feature;gene=kpsS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1413c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1346283	1348352	.	-	.	ID=gene-Cj1414c;Name=kpsC;gbkey=Gene;gene=kpsC;gene_biotype=protein_coding;locus_tag=Cj1414c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1346283	1348352	.	-	0	ID=cds-CAL35523.1;Parent=gene-Cj1414c;Dbxref=EnsemblGenomes-Gn:Cj1414c,EnsemblGenomes-Tr:CAL35523,GOA:Q0P8K0,InterPro:IPR007833,UniProtKB/TrEMBL:Q0P8K0,NCBI_GP:CAL35523.1;Name=CAL35523.1;Note=Original (2000) note: Cj1414c%2C possible polysaccharide modification protein%2C len: 689 aa%3B similar to e.g. LIPA_NEIME capsule polysaccharide modification protein (400 aa)%2C fasta scores%3B opt: 927 z-score: 1062.5 E(): 0%2C 39.6%25 identity in 394 aa overlap%2C and KSC5_ECOLI capsule polysaccharide export protein KPSC (675 aa)%2C fasta scores%3B opt: 724 z-score: 827.0 E(): 0%2C 38.5%25 identity in 655 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF05159 Capsule polysaccharide biosynthesis protein identified within CDS. Further support given to product function. Possible removed from product function due to characterisation within more than one genus with acceptable identity scores. Literature search identified papers giving further clues to product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:8326861%2C PMID:8397187%2C PMID:15612919%2CPMID:10672176;gbkey=CDS;gene=kpsC;inference=protein motif:Pfam:PF05159;locus_tag=Cj1414c;product=capsule polysaccharide modification protein;protein_id=CAL35523.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1346451	1347257	.	-	.	ID=id-Cj1414c;Note=HMMPfam hit to PF05159%2C Capsule polysaccharide biosynthesis pro%2C score 2.5e-118;gbkey=misc_feature;gene=kpsC;inference=protein motif:Pfam:PF05159;locus_tag=Cj1414c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1347477	1348256	.	-	.	ID=id-Cj1414c-2;Note=HMMPfam hit to PF05159%2C Capsule polysaccharide biosynthesis pro%2C score 2.5e-81;gbkey=misc_feature;gene=kpsC;inference=protein motif:Pfam:PF05159;locus_tag=Cj1414c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1348349	1348861	.	-	.	ID=gene-Cj1415c;Name=cysC;gbkey=Gene;gene=cysC;gene_biotype=protein_coding;locus_tag=Cj1415c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1348349	1348861	.	-	0	ID=cds-CAL35524.1;Parent=gene-Cj1415c;Dbxref=EnsemblGenomes-Gn:Cj1415c,EnsemblGenomes-Tr:CAL35524,GOA:Q0P8J9,InterPro:IPR000623,InterPro:IPR002891,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P8J9,NCBI_GP:CAL35524.1;Name=CAL35524.1;Note=Original (2000) note: Cj1415c%2C cysC%2C possible adenylylsulfate kinase%2C len: 170 aa%3B similar to e.g. CYSC_ECOLI P23846 adenylylsulfate kinase (EC 2.7.1.25) (200 aa)%2C blastp scores%3B E %3D 4.2e-13%2C 28%25 identity in 164 aa overlap%2C and part of NODQ_RHIS3 probable sulfate adenylate transferase subunit 1 (646 aa)%2C fasta scores%3B opt: 314 z-score: 373.9 E(): 1.7e-13%2C 32.9%25 identity in 161 aa overlap. No Hp ortholog. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF01583 Adenylylsulphate kinase identified within CDS. Further support given to product function. Characterisation work carried out within Esherichia coli%2C however%2C identity score was marginal. Thus%2C putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:1332767;gbkey=CDS;gene=cysC;inference=protein motif:Prosite:PS00017;locus_tag=Cj1415c;product=putative adenylylsulfate kinase;protein_id=CAL35524.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1348397	1348852	.	-	.	ID=id-Cj1415c;Note=HMMPfam hit to PF01583%2C Adenylylsulphate kinase%2Cscore 2.7e-17;gbkey=misc_feature;gene=cysC;inference=protein motif:Pfam:PF01583;locus_tag=Cj1415c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1348805	1348828	.	-	.	ID=id-Cj1415c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=cysC;inference=protein motif:Prosite:PS00017;locus_tag=Cj1415c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1348851	1349612	.	-	.	ID=gene-Cj1416c;Name=Cj1416c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1416c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1348851	1349612	.	-	0	ID=cds-CAL35525.1;Parent=gene-Cj1416c;Dbxref=EnsemblGenomes-Gn:Cj1416c,EnsemblGenomes-Tr:CAL35525,GOA:Q0P8J8,InterPro:IPR005835,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P8J8,NCBI_GP:CAL35525.1;Name=CAL35525.1;Note=Original (2000) note: Cj1416c%2C probable sugar nucleotidyltransferase%2C len: 253 aa%3B similar to predicted nucleotidyltransferases e.g. TR:O29123 (EMBL:AE001025) Archaeoglobus fulgidus predicted glucose-1-phosphate cytidylyltransferase AF1142 (241 aa)%2C fasta scores%3B opt: 252 z-score: 309.2 E(): 6.7e-10%2C 26.7%25 identity in 251 aa overlap. Also similar in part to LICC_HAEIN LICC protein (involved in LPS synthesis) (198 aa)%2C fasta scores%3B opt: 209 z-score: 259.6 E(): 3.9e-07%2C 32.7%25 identity in 107 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase%3B~Updated (2006) note: Specific characterisation still required%2C so putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;inference=protein motif:Pfam:PF00483;locus_tag=Cj1416c;product=putative sugar nucleotidyltransferase;protein_id=CAL35525.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1348863	1349609	.	-	.	ID=id-Cj1416c;Note=HMMPfam hit to PF00483%2C Nucleotidyl transferase%2Cscore 0.00053;gbkey=misc_feature;inference=protein motif:Pfam:PF00483;locus_tag=Cj1416c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1349614	1350216	.	-	.	ID=gene-Cj1417c;Name=Cj1417c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1417c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1349614	1350216	.	-	0	ID=cds-CAL35526.1;Parent=gene-Cj1417c;Dbxref=EnsemblGenomes-Gn:Cj1417c,EnsemblGenomes-Tr:CAL35526,GOA:Q0P8J7,InterPro:IPR017926,InterPro:IPR029062,UniProtKB/TrEMBL:Q0P8J7,NCBI_GP:CAL35526.1;Name=CAL35526.1;Note=Original (2000) note: Cj1417c%2C unknown%2C len: 200 aa%3B some similarity to the C-terminus of carbamoyl-phosphate synthase small subunitss e.g. CARX_BACSU carbamoyl-phosphate synthase%2Carginine-specific%2C small chain (353 aa)%2C fasta scores%3B opt: 134 z-score: 174.1 E(): 0.022%2C 27.3%25 identity in 99 aa overlap. No Hp ortholog%3B~Updated (2006) note: Pfam domain PF00117%2C Glutamine amidotransferase class-I identified within CDS. Product function modified to more specific family member based on motif match. Putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Misc%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;inference=protein motif:Pfam:PF00117;locus_tag=Cj1417c;product=putative amidotransferase;protein_id=CAL35526.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1350207	1352546	.	-	.	ID=gene-Cj1418c;Name=Cj1418c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1418c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1350207	1352546	.	-	0	ID=cds-CAL35527.1;Parent=gene-Cj1418c;Dbxref=EnsemblGenomes-Gn:Cj1418c,EnsemblGenomes-Tr:CAL35527,GOA:Q0P8J6,InterPro:IPR002192,InterPro:IPR008279,InterPro:IPR013815,InterPro:IPR013816,UniProtKB/TrEMBL:Q0P8J6,NCBI_GP:CAL35527.1;Name=CAL35527.1;Note=Original (2000) note: Cj1418c%2C unknown%2C len: 779 aa%3B weak similarity in part to several phosphoenolpyruvate synthases e.g. PPSA_STAMA probable phosphoenolpyruvate synthase (834 aa)%2C fasta scores%3B opt: 166 z-score: 182.8 E(): 0.0074%2C 23.9%25 identity in 226 aa overlap. No Hp ortholog%3B~Updated (2006) note: Interpro IPR008279%2CPEP-utilising enzyme%2C mobile region identified within CDS. Product modified to more specific family member. Similar to phosphoenolpyruvate synthase and pyruvate kinase in other bacteria with unnacceptable identity scores. Putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Misc%3B~PMID:15612919%2C PMID:10672176%2C PMID:2176881;gbkey=CDS;locus_tag=Cj1418c;product=putative transferase;protein_id=CAL35527.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1352561	1353322	.	-	.	ID=gene-Cj1419c;Name=Cj1419c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1419c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1352561	1353322	.	-	0	ID=cds-CAL35528.1;Parent=gene-Cj1419c;Dbxref=EnsemblGenomes-Gn:Cj1419c,EnsemblGenomes-Tr:CAL35528,GOA:Q0P8J5,InterPro:IPR013216,InterPro:IPR029063,UniProtKB/TrEMBL:Q0P8J5,NCBI_GP:CAL35528.1;Name=CAL35528.1;Note=Original (2000) note: Cj1419c%2C possible methyltransferase%2C len: 253 aa%3B similar to hypothetical proteins e.g. TR:O53392 (EMBL:AL021841) Mycobacterium tuberculosis Rv3342 (MTV016.42) (243 aa)%2C fasta scores%3B opt: 210 z-score: 250.1 E(): 1.3e-06%2C 32.0%25 identity in 122 aa overlap. Also contains weak similarity in part to several methyltransferases e.g. UBIE_ECOLI ubiquinone/menaquinone biosynthesis methyltransferase (251 aa)%2C fasta scores%3B opt: 141 z-score: 171.3 E(): 0.032%2C24.2%25 identity in 132 aa overlap. No Hp match. Also similar to Cj1420c (33.7%25 identity in 255 aa overlap)%3B~Updated (2006) note: Running individual Pfam search identified PF08241 and PF08242 Methyltransferase domains. Further support given to product function. No specific characterisation carried out yet. Literature search identified papers giving further clues to product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Misc%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;inference=protein motif:Pfam:PF08242;locus_tag=Cj1419c;product=putative methyltransferase;protein_id=CAL35528.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1353375	1354148	.	-	.	ID=gene-Cj1420c;Name=Cj1420c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1420c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1353375	1354148	.	-	0	ID=cds-CAL35529.1;Parent=gene-Cj1420c;Dbxref=EnsemblGenomes-Gn:Cj1420c,EnsemblGenomes-Tr:CAL35529,GOA:Q0P8J4,InterPro:IPR013216,InterPro:IPR022272,InterPro:IPR029063,UniProtKB/TrEMBL:Q0P8J4,NCBI_GP:CAL35529.1;Name=CAL35529.1;Note=Original (2000) note: Cj1420c%2C unknown%2C len: 258 aa%3B similar to hypothetical proteins e.g. TR:O53392 (EMBL:AL021841) Mycobacterium tuberculosis Rv3342 (MTV016.42) (243 aa)%2C fasta scores%3B opt: 219 z-score: 263.3 E(): 2.4e-07%2C 30.7%25 identity in 137 aa overlap. Also similar to Cj1419c (34.1%25 identity in 255 aa overlap). Contains C(9-10) polymorphic region at aa 132. C9 (consensus) gives this ORF%2C C10 would give truncation after a further 19 aa%3B~Updated (2006) note: Prostie domain PS00213 LIPOCALIN%2C Lipocalin signature identified within CDS. Conserved added to product function. Running individual Pfam search identified PF08241 and PF08242 Methyltransferase domains. Product modified to more specific family member based on motif search results. No specific characterisation has been carried out yet%2C so putative kept within product function. Literature search identified paper giving further clues to product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Misc%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;inference=protein motif:Prosite:PS00213;locus_tag=Cj1420c;product=putative methyltransferase;protein_id=CAL35529.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1353507	1353542	.	-	.	ID=id-Cj1420c;Note=PS00213 Lipocalin signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00213;locus_tag=Cj1420c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1354133	1382483	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1354133..1382483;Note=region with low G+C: 26.5%25;gbkey=misc_feature
gi|15791399|ref|NC_002163.1|	EMBL	gene	1354215	1356053	.	-	.	ID=gene-Cj1421c;Name=Cj1421c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1421c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1354215	1356053	.	-	0	ID=cds-CAL35530.1;Parent=gene-Cj1421c;Dbxref=EnsemblGenomes-Gn:Cj1421c,EnsemblGenomes-Tr:CAL35530,GOA:Q0P8J3,InterPro:IPR021353,UniProtKB/TrEMBL:Q0P8J3,NCBI_GP:CAL35530.1;Name=CAL35530.1;Note=Original (2000) note: Cj1421c%2C possible sugar transferase%2C len: 612 aa%3B no Hp match. Similar to polymorphic tract-containing genes Cj1422c (overall 58.2%25 identity in 636 aa overlap%2C but N- and C-terminal 250 and 40 aa are identical)%2C Cj0685c (28.0%25 identity in 404 aa overlap). N-terminus is simlar to parts of Cj1431c (38.6%25 identity in 114 aa overlap)%2C and putative sugar transferases Cj1434c (39.6%25 identity in 111 aa overlap)%2Cand Cj1438c (34.6%25 identity in 127 aa overlap). Contains C(8-10) polymorphic tract at aa 30. C9 (consensus) gives this ORF%2C C8 gives truncation after +1 aa%2C C10 gives truncation after +5 aa. Putative functional assignment is based on family clustering (BLASTP) with other C. jejuni predicted sugar transferases e.g. Cj1434c%2C and Cj1438c%3B~Updated (2006) note: Identified within the Campylobacter jejuni Capsule locus (Cj1413c - Cj1448c). No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;locus_tag=Cj1421c;product=putative sugar transferase;protein_id=CAL35530.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1356108	1357985	.	-	.	ID=gene-Cj1422c;Name=Cj1422c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1422c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1356108	1357985	.	-	0	ID=cds-CAL35531.1;Parent=gene-Cj1422c;Dbxref=EnsemblGenomes-Gn:Cj1422c,EnsemblGenomes-Tr:CAL35531,GOA:Q0P8J2,InterPro:IPR021353,UniProtKB/TrEMBL:Q0P8J2,NCBI_GP:CAL35531.1;Name=CAL35531.1;Note=Original (2000) note: Cj1422c%2C possible sugar transferase%2C len: 625 aa%3B no Hp match. Similar to polymorphic tract-containing genes Cj1421c (overall 58.2%25 identity in 636 aa overlap%2C but N- and C-terminal 250 and 40 aa are identical)%2C Cj0685c (25.6%25 identity in 442 aa overlap). N-terminus is simlar to parts of Cj1431c (38.6%25 identity in 114 aa overlap)%2C and putative sugar transferases Cj1434c (39.6%25 identity in 111 aa overlap)%2Cand Cj1438c (23.5%25 identity in 452 aa overlap). Contains C(9-10) polymorphic tract at aa 30. C9 (consensus) gives this ORF%2C C10 gives truncation after +5 aa. Putative functional assignment is based on family clustering (BLASTP) with other C. jejuni predicted sugar transferases e.g. Cj1434c%2C and Cj1438c%3B~Updated (2006) note: Prosite PS00221 MIP family signature identified within CDS. No specific characterisation has been carried out yet. Putative kept within product function. Identified within the Campylobacter jejuni Capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;inference=protein motif:Prosite:PS00221;locus_tag=Cj1422c;product=putative sugar transferase;protein_id=CAL35531.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1356117	1356143	.	-	.	ID=id-Cj1422c;Note=PS00221 MIP family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00221;locus_tag=Cj1422c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1358036	1358701	.	-	.	ID=gene-Cj1423c;Name=hddC;gbkey=Gene;gene=hddC;gene_biotype=protein_coding;locus_tag=Cj1423c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1358036	1358701	.	-	0	ID=cds-CAL35532.1;Parent=gene-Cj1423c;Dbxref=EnsemblGenomes-Gn:Cj1423c,EnsemblGenomes-Tr:CAL35532,GOA:Q0P8J1,InterPro:IPR005835,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P8J1,NCBI_GP:CAL35532.1;Name=CAL35532.1;Note=Original (2000) note: Cj1423c%2C possible sugar-phosphate nucleotidyltransferase%2C len: 221 aa%3B similar to many predicted nucleotidyltransferases%2C e.g. TR:O58775 (EMBL:AP000004) Pyrococcus horikoshii hypothetical sugar-phosphate nucleotydyl transferase PH1022 (416 aa)%2C fasta scores%3B opt: 413 z-score: 496.0 E(): 2.6e-20%2C 34.3%25 identity in 230 aa overlap%2C and MPG1_YEAST mannose-1-phosphate guanyltransferase (361 aa)%2Cfasta scores%3B opt: 258 z-score: 313.4 E(): 3.9e-10%2C 28.9%25 identity in 232 aa overlap. Contains Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase. No Hp ortholog. Also similar to Cj1329 (35.6%25 identity in 216 aa overlap)%3B~Updated (2006) note: Some characterisation work carried out within Campylobacter jejuni. Product function modified to more specific family member. Putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;gene=hddC;inference=protein motif:Pfam:PF00483;locus_tag=Cj1423c;product=putative D-glycero-D-manno-heptose 1-phosphate guanosyltransferase;protein_id=CAL35532.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1358039	1358698	.	-	.	ID=id-Cj1423c;Note=HMMPfam hit to PF00483%2C Nucleotidyl transferase%2Cscore 1.9e-13;gbkey=misc_feature;gene=hddC;inference=protein motif:Pfam:PF00483;locus_tag=Cj1423c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1358689	1359294	.	-	.	ID=gene-Cj1424c;Name=gmhA2;gbkey=Gene;gene=gmhA2;gene_biotype=protein_coding;locus_tag=Cj1424c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1358689	1359294	.	-	0	ID=cds-CAL35533.1;Parent=gene-Cj1424c;Dbxref=EnsemblGenomes-Gn:Cj1424c,EnsemblGenomes-Tr:CAL35533,GOA:Q9PMN3,InterPro:IPR001347,InterPro:IPR004515,NCBI_GP:CAL35533.1;Name=CAL35533.1;Note=Original (2000) note: Cj1424c%2C gmhA2%2C probable phosphoheptose isomerase%2C len: 201 aa%3B similar to many e.g. LPCA_ECOLI phosphoheptose isomerase (EC 5.-.-.-) (192 aa)%2C fasta scores%3B opt: 453 z-score: 548.7 E(): 3.1e-23%2C39.2%25 identity in 186 aa overlap. No Hp ortholog. Also similar to Cj1149c gmhA (57.8%25 identity in 147 aa overlap)%3B~Updated (2006) note: Pfam domain PF01380 SIS domain identified within CDS. Further support given to product function. Characterisation work carried out within Campylobacter jejuni and Escherichia coli%2C so putative removed from product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176%2C PMID:12101286;gbkey=CDS;gene=gmhA2;inference=protein motif:Pfam:PF01380;locus_tag=Cj1424c;product=phosphoheptose isomerase;protein_id=CAL35533.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1358710	1359177	.	-	.	ID=id-Cj1424c;Note=HMMPfam hit to PF01380%2C SIS domain%2C score 1.4e-11;gbkey=misc_feature;gene=gmhA2;inference=protein motif:Pfam:PF01380;locus_tag=Cj1424c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1359282	1360301	.	-	.	ID=gene-Cj1425c;Name=hddA;gbkey=Gene;gene=hddA;gene_biotype=protein_coding;locus_tag=Cj1425c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1359282	1360301	.	-	0	ID=cds-CAL35534.1;Parent=gene-Cj1425c;Dbxref=EnsemblGenomes-Gn:Cj1425c,EnsemblGenomes-Tr:CAL35534,GOA:Q0P8I9,InterPro:IPR001174,InterPro:IPR006204,InterPro:IPR013750,InterPro:IPR014606,InterPro:IPR014721,InterPro:IPR020568,PDB:4N3O,UniProtKB/TrEMBL:Q0P8I9,NCBI_GP:CAL35534.1;Name=CAL35534.1;Note=Original (2000) note: Cj1425c%2C possible sugar kinase%2C len: 339 aa%3B similar to e.g. GAL1_LACHE galactokinase (388 aa)%2C fasta scores%3B opt: 186 z-score: 227.6 E(): 2.4e-05%2C 24.3%25 identity in 371 aa overlap. Contains PS00012 Phosphopantetheine attachment site. No Hp match%3B~Updated (2006) note: Pfam domain PF00288 GHMP kinases putative ATP-binding protein identified within CDS. Further support given to product function. Literature search identified work carried out within Campylobacter jejuni. Not yet fully characterised%2C so putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;gene=hddA;inference=protein motif:Prosite:PS00012;locus_tag=Cj1425c;product=putative D-glycero-D-manno-heptose 7-phosphate kinase;protein_id=CAL35534.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1359381	1360010	.	-	.	ID=id-Cj1425c;Note=HMMPfam hit to PF00288%2C GHMP kinases putative ATP-binding protei%2C score 5.8e-42;gbkey=misc_feature;gene=hddA;inference=protein motif:Pfam:PF00288;locus_tag=Cj1425c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1359921	1359968	.	-	.	ID=id-Cj1425c-2;Note=PS00012 Phosphopantetheine attachment site;gbkey=misc_feature;gene=hddA;inference=protein motif:Prosite:PS00012;locus_tag=Cj1425c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1360321	1361172	.	-	.	ID=gene-Cj1426c;Name=Cj1426c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1426c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1360321	1361172	.	-	0	ID=cds-CAL35535.1;Parent=gene-Cj1426c;Dbxref=EnsemblGenomes-Gn:Cj1426c,EnsemblGenomes-Tr:CAL35535,GOA:Q0P8I8,InterPro:IPR006342,InterPro:IPR029063,UniProtKB/TrEMBL:Q0P8I8,NCBI_GP:CAL35535.1;Name=CAL35535.1;Note=Original (2000) note: Cj1426c%2C unknown%2C len: 283 aa%3B no Hp match. Contains C(10-11) polymorphic region at aa 99. C10 (consensus) gives this ORF%2C C11 gives truncation after +8 aa%3B~Updated (2006) note: TIGRFAM motif TIGR01444 Methyltransferase FkbM%2C identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c -Cj1448c). Functional classification - Misc%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;locus_tag=Cj1426c;product=putative methyltransferase family protein;protein_id=CAL35535.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1361191	1362132	.	-	.	ID=gene-Cj1427c;Name=Cj1427c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1427c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1361191	1362132	.	-	0	ID=cds-CAL35536.1;Parent=gene-Cj1427c;Dbxref=EnsemblGenomes-Gn:Cj1427c,EnsemblGenomes-Tr:CAL35536,GOA:Q0P8I7,InterPro:IPR001509,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P8I7,NCBI_GP:CAL35536.1;Name=CAL35536.1;Note=Original (2000) note: Cj1427c%2C probable sugar-nucleotide epimerase/dehydratease%2C len: 313 aa%3B similar to many predicted epimerases/dehydrateases e.g. TR:Q25130 (EMBL:D25537) HALOCYNTHIA RORETZI (SEA SQUIRT) gene with similarity to UDPglucose4-epimerases and 3beta-hydroxysteroid dehydrogenase/isomerases HREPIB (241 aa)%2C fasta scores%3B opt: 585 z-score: 691.2 E(): 3.5e-31%2C44.2%25 identity in 208 aa overlap%2C and TR:O73960 (EMBL:AP000002) Pyrococcus horikoshii hypothetical UDP-glucose 4-epimerase (318 aa)%2C fasta scores%3B opt: 304 z-score: 361.7 E(): 7.9e-13%2C 26.4%25 identity in 326 aa overlap. No Hp ortholog%3B~Updated (2006) note: Pfam domain PF01370 NAD dependent epimerase/dehydratase family identified within CDS. Further support given to product function. Literature search identified papers giving further information on product function. Putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176%2C PMID:9708982;gbkey=CDS;inference=protein motif:Pfam:PF01370;locus_tag=Cj1427c;product=putative sugar-nucleotide epimerase/dehydratease;protein_id=CAL35536.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1362156	1363196	.	-	.	ID=gene-Cj1428c;Name=fcl;gbkey=Gene;gene=fcl;gene_biotype=protein_coding;locus_tag=Cj1428c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1362156	1363196	.	-	0	ID=cds-CAL35537.1;Parent=gene-Cj1428c;Dbxref=EnsemblGenomes-Gn:Cj1428c,EnsemblGenomes-Tr:CAL35537,GOA:Q0P8I6,InterPro:IPR001509,InterPro:IPR016040,InterPro:IPR028614,UniProtKB/TrEMBL:Q0P8I6,NCBI_GP:CAL35537.1;Name=CAL35537.1;Note=Original (2000) note: Cj1428c%2C fcl%2C probable fucose synthetase%2C len: 346 aa%3B similar to e.g. FCL_ECOLI fucose synthetase (321 aa)%2C fasta scores%3B opt: 562 z-score: 690.0 E(): 4.1e-31%2C 39.0%25 identity in 341 aa overlap. 29.6%25 identity to HP0045. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF01370 NAD dependent epimerase/dehydratase family identified within CDS. Further support given to product function. Literature search identified papers giving further information on product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176%2C PMID:11021971%2CPMID:9862812;gbkey=CDS;gene=fcl;inference=protein motif:Prosite:PS00017;locus_tag=Cj1428c;product=GDP-L-fucose synthetase;protein_id=CAL35537.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1362663	1362686	.	-	.	ID=id-Cj1428c;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=fcl;inference=protein motif:Prosite:PS00017;locus_tag=Cj1428c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1363196	1364122	.	-	.	ID=gene-Cj1429c;Name=Cj1429c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1429c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1363196	1364122	.	-	0	ID=cds-CAL35538.1;Parent=gene-Cj1429c;Dbxref=EnsemblGenomes-Gn:Cj1429c,EnsemblGenomes-Tr:CAL35538,InterPro:IPR006342,UniProtKB/TrEMBL:Q0P8I5,NCBI_GP:CAL35538.1;Name=CAL35538.1;Note=Original (2000) note: Cj1429c%2C unknown%2C len: 308 aa%3B no Hp match. Contains C(9-10) polymorphic region at aa 98. C10 (consensus) gives this ORF%2C C9 would give truncation after +1 aa%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Unknown%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;locus_tag=Cj1429c;product=hypothetical protein Cj1429c;protein_id=CAL35538.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1364126	1364671	.	-	.	ID=gene-Cj1430c;Name=rfbC;gbkey=Gene;gene=rfbC;gene_biotype=protein_coding;locus_tag=Cj1430c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1364126	1364671	.	-	0	ID=cds-CAL35539.1;Parent=gene-Cj1430c;Dbxref=EnsemblGenomes-Gn:Cj1430c,EnsemblGenomes-Tr:CAL35539,GOA:Q0P8I4,InterPro:IPR000888,InterPro:IPR011051,InterPro:IPR014710,UniProtKB/TrEMBL:Q0P8I4,NCBI_GP:CAL35539.1;Name=CAL35539.1;Note=Original (2000) note: Cj1430c%2C probable nucleotide-sugar epimerase/dehydratase%2C len: 181 aa%3B similar to e.g. RFBC_ECOLI DTDP-4-dehydrorhamnose 3%2C5-epimerase (185 aa)%2C fasta scores%3B opt: 303 z-score: 386.2 E(): 3.4e-14%2C 33.9%25 identity in 165 aa overlap%2C and TR:Q46770 (EMBL:U23775) E. coli rmlC DTDP-6-deoxy-l-lyxo-4-hexulose reductase (183 aa)%2C fasta scores%3B opt: 306 z-score: 390.0 E(): 2.1e-14%2C 33.5%25 identity in 164 aa overlap. No Hp match. Contains Pfam match to entry PF00908 dTDP_sugar_isom%2CdTDP-4-dehydrorhamnose 3%2C5-epimerase%3B~Updated (2006) note: Pfam domain PF00908 dTDP-4-dehydrorhamnose 3%2C5-epimerase identified within CDS. Further support given to product function. Literature search identified papers giving further information on product function. Product function modified based on literature search information. Characterised within Escherichia coli with marginal identity score. Putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176%2C PMID:7517390;gbkey=CDS;gene=rfbC;inference=protein motif:Pfam:PF00908;locus_tag=Cj1430c;product=putative dTDP-4-dehydrorhamnose 3%2C5-epimerase;protein_id=CAL35539.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1364138	1364668	.	-	.	ID=id-Cj1430c;Note=HMMPfam hit to PF00908%2C dTDP-4-dehydrorhamnose 3%2C5-epimerase%2C score 9.4e-17;gbkey=misc_feature;gene=rfbC;inference=protein motif:Pfam:PF00908;locus_tag=Cj1430c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1364671	1366419	.	-	.	ID=gene-Cj1431c;Name=hddC;gbkey=Gene;gene=hddC;gene_biotype=protein_coding;locus_tag=Cj1431c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1364671	1366419	.	-	0	ID=cds-CAL35540.1;Parent=gene-Cj1431c;Dbxref=EnsemblGenomes-Gn:Cj1431c,EnsemblGenomes-Tr:CAL35540,GOA:Q0P8I3,UniProtKB/TrEMBL:Q0P8I3,NCBI_GP:CAL35540.1;Name=CAL35540.1;Note=Original (2000) note: Cj1431c%2C unknown%2C len: 582 aa%3B no Hp match. Similar in part to N-termini of Cj1421c (38.6%25 identity in 114 aa overlap)%2C and Cj1422c (38.6%25 identity in 114 aa overlap). Contains PS00455 Putative AMP-binding domain signature%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Product modified to more specific family member based on literature search results. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:15612919;gbkey=CDS;gene=hddC;inference=protein motif:Prosite:PS00455;locus_tag=Cj1431c;product=capsular polysaccharide heptosyltransferase;protein_id=CAL35540.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1365574	1365609	.	-	.	ID=id-Cj1431c;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=hddC;inference=protein motif:Prosite:PS00455;locus_tag=Cj1431c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1366422	1369517	.	-	.	ID=gene-Cj1432c;Name=Cj1432c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1432c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1366422	1369517	.	-	0	ID=cds-CAL35541.1;Parent=gene-Cj1432c;Dbxref=EnsemblGenomes-Gn:Cj1432c,EnsemblGenomes-Tr:CAL35541,GOA:Q0P8I2,InterPro:IPR001296,InterPro:IPR006439,InterPro:IPR023214,UniProtKB/TrEMBL:Q0P8I2,NCBI_GP:CAL35541.1;Name=CAL35541.1;Note=Original (2000) note: Cj1432c%2C possible sugar transferase%2C len: 1031 aa%3B weakly similar to e.g. TR:Q48232 (EMBL:X78559) Haemophilus influenzae orf3 in DNA for serotypE B capsulation locus (1215 aa)%2C fasta scores%3B opt: 361 z-score: 398.4 E(): 7.2e-15%2C 22.8%25 identity in 1029 aa overlap%2C and TR:O84910 (EMBL:AF010183) glycosyltransferase WBPZ (381 aa)%2C fasta scores%3B opt: 161 z-score: 182.7 E(): 0.0074%2C 23.1%25 identity in 251 aa overlap. Contains Pfam match to entry PF00534 Glycos_transf_1%2C Glycosyl transferases group 1. Also similar to Cj1434c (23.1%25 identity in 424 aa overlap)%3B~Updated (2006) note: Literature search identified papers giving further clues about product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;inference=protein motif:Pfam:PF00534;locus_tag=Cj1432c;product=putative sugar transferase;protein_id=CAL35541.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1368522	1369040	.	-	.	ID=id-Cj1432c;Note=HMMPfam hit to PF00534%2C Glycosyl transferases group%2C score 3.7e-23;gbkey=misc_feature;inference=protein motif:Pfam:PF00534;locus_tag=Cj1432c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1369527	1370633	.	-	.	ID=gene-Cj1433c;Name=Cj1433c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1433c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1369527	1370633	.	-	0	ID=cds-CAL35542.1;Parent=gene-Cj1433c;Dbxref=EnsemblGenomes-Gn:Cj1433c,EnsemblGenomes-Tr:CAL35542,GOA:Q0P8I1,InterPro:IPR013785,UniProtKB/TrEMBL:Q0P8I1,NCBI_GP:CAL35542.1;Name=CAL35542.1;Note=Original (2000) note: Cj1433c%2C unknown%2C len: 368 aa%3B no Hp match. Contains 9 repeats of the aa sequence KIDLNNT near the N-terminus%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Unknown%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;locus_tag=Cj1433c;product=hypothetical protein Cj1433c;protein_id=CAL35542.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1370374	1370562	.	-	.	ID=id-Cj1433c;Note=9 copies of 21bp repeat;gbkey=repeat_region;locus_tag=Cj1433c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1370667	1372004	.	-	.	ID=gene-Cj1434c;Name=Cj1434c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1434c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1370667	1372004	.	-	0	ID=cds-CAL35543.1;Parent=gene-Cj1434c;Dbxref=EnsemblGenomes-Gn:Cj1434c,EnsemblGenomes-Tr:CAL35543,GOA:Q0P8I0,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P8I0,NCBI_GP:CAL35543.1;Name=CAL35543.1;Note=Original (2000) note: Cj1434c%2C probable sugar transferase%2C len: 445 aa%3B similar in N-terminus to e.g. TR:O07340 (EMBL:O07340) Streptococcus pneumoniae SS-1%2C4-galactosyltransferase (318 aa)%2C fasta scores%3B opt: 344 z-score: 405.7 E(): 2.8e-15%2C 27.3%25 identity in 326 aa overlap. No Hp ortholog. Highly similar to Cj1438c (72.4%25 identity in 456 aa overlap). Contains Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases%3B~Updated (2006) note: No specific characterisation has been carried out yet%2C so putative kept within product function. Literature search identified papers giving further clues to product funciton. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;inference=protein motif:Pfam:PF00535;locus_tag=Cj1434c;product=putative sugar transferase;protein_id=CAL35543.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1371477	1371977	.	-	.	ID=id-Cj1434c;Note=HMMPfam hit to PF00535%2C Glycosyl transferase%2C score 7.9e-35;gbkey=misc_feature;inference=protein motif:Pfam:PF00535;locus_tag=Cj1434c
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	1371481	1371516	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1371481..1371516;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	1372056	1372691	.	-	.	ID=gene-Cj1435c;Name=Cj1435c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1435c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1372056	1372691	.	-	0	ID=cds-CAL35544.1;Parent=gene-Cj1435c;Dbxref=EnsemblGenomes-Gn:Cj1435c,EnsemblGenomes-Tr:CAL35544,GOA:Q0P8H9,InterPro:IPR006383,InterPro:IPR006385,InterPro:IPR023214,UniProtKB/TrEMBL:Q0P8H9,NCBI_GP:CAL35544.1;Name=CAL35544.1;Note=Original (2000) note: Cj1435c%2C unknown%2C len: 211 aa%3B similar to TR:Q58989 (EMBL:U67599) Methanococcus jannaschii hypothetical protein MJ1594 (211 aa)%2C fasta scores%3B opt: 177 z-score: 228.6 E(): 2.1e-05%2C 23.5%25 identity in 196 aa overlap. No Hp match%3B~Updated (2006) note: TIGRFAM motifs identified HAD-superfamily proteins within CDS. Literature search identified paper giving further information to product function. Product function modified to more specific family member due to motif identification and literature search. Specific characterisation still required%2C so putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Misc%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;locus_tag=Cj1435c;product=putative phosphatase;protein_id=CAL35544.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1372695	1373867	.	-	.	ID=gene-Cj1436c;Name=Cj1436c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1436c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1372695	1373867	.	-	0	ID=cds-CAL35545.1;Parent=gene-Cj1436c;Dbxref=EnsemblGenomes-Gn:Cj1436c,EnsemblGenomes-Tr:CAL35545,GOA:Q0P8H8,InterPro:IPR004838,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0P8H8,NCBI_GP:CAL35545.1;Name=CAL35545.1;Note=Original (2000) note: Cj1436c%2C probable aminotransferase%2C len: 390 aa%3B weakly similar to e.g. HIS8_BACSU histidinol-phosphate aminotransferase (360 aa)%2Cfasta scores%3B opt: 304 z-score: 351.9 E(): 2.8e-12%2C 25.5%25 identity in 318 aa overlap. No Hp match. Also similar to Cj0317 (hisC) (25.7%25 identity in 304 aa overlap)%2C and Cj1437c (23.1%25 identity in 347 aa overlap). Contains PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site%3B~Updated (2006) note: Pfam domain PF00155 Aminotransferase class I and II identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with marginal identity score. Putative removed from product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Misc%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;inference=protein motif:Prosite:PS00105;locus_tag=Cj1436c;product=aminotransferase;protein_id=CAL35545.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1372704	1373594	.	-	.	ID=id-Cj1436c;Note=HMMPfam hit to PF00155%2C Aminotransferase class I and II%2C score 2.2e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF00155;locus_tag=Cj1436c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1373109	1373150	.	-	.	ID=id-Cj1436c-2;Note=PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00105;locus_tag=Cj1436c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1373917	1375020	.	-	.	ID=gene-Cj1437c;Name=Cj1437c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1437c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1373917	1375020	.	-	0	ID=cds-CAL35546.1;Parent=gene-Cj1437c;Dbxref=EnsemblGenomes-Gn:Cj1437c,EnsemblGenomes-Tr:CAL35546,GOA:Q0P8H7,InterPro:IPR001917,InterPro:IPR004839,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,UniProtKB/TrEMBL:Q0P8H7,NCBI_GP:CAL35546.1;Name=CAL35546.1;Note=Original (2000) note: Cj1437c%2C probable aminotransferase%2C len: 367 aa%3B similar to e.g. HIS8_BACSU histidinol-phosphate aminotransferase (360 aa)%2C fasta scores%3B opt: 408 z-score: 478.1 E(): 2.6e-19%2C 28.6%25 identity in 360 aa overlap. No Hp match. Also similar to Cj0317 (hisC) (29.9%25 identity in 344 aa overlap)%2C and Cj1436c (23.3%25 identity in 347 aa overlap). Contains Pfam match to entry PF00222 aminotran_2%2C Aminotransferases class-II%2C and PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site%3B~Updated (2006) note: Pfam domain PF00155 Aminotransferase class I and II identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with marginal identity score. Appropriate motifs present. Putative removed from product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Misc%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;inference=protein motif:Prosite:PS00599;locus_tag=Cj1437c;product=aminotransferase;protein_id=CAL35546.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1373947	1374810	.	-	.	ID=id-Cj1437c;Note=HMMPfam hit to PF00155%2C Aminotransferase class I and II%2C score 9.2e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF00155;locus_tag=Cj1437c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1374346	1374375	.	-	.	ID=id-Cj1437c-2;Note=PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00599;locus_tag=Cj1437c
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1374136	1374144	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1374136..1374144;Note=C(9);gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	gene	1375007	1377337	.	-	.	ID=gene-Cj1438c;Name=Cj1438c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1438c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1375007	1377337	.	-	0	ID=cds-CAL35547.1;Parent=gene-Cj1438c;Dbxref=EnsemblGenomes-Gn:Cj1438c,EnsemblGenomes-Tr:CAL35547,GOA:Q0P8H6,InterPro:IPR001173,InterPro:IPR029044,InterPro:IPR029465,UniProtKB/TrEMBL:Q0P8H6,NCBI_GP:CAL35547.1;Name=CAL35547.1;Note=Original (2000) note: Cj1438c%2C probable sugar transferase%2C len: 776 aa%3B similar in N-terminus to e.g. TR:O07340 (EMBL:O07340) Streptococcus pneumoniae SS-1%2C4-galactosyltransferase (318 aa)%2C fasta scores%3B opt: 325 z-score: 375.2 E(): 1.4e-13%2C 26.9%25 identity in 316 aa overlap. Similar in C-terminus to TR:O31348 (EMBL:Y11138) Bacillus cereus hypothetical protein (ORF2) (300 aa)%2Cfasta scores%3B opt: 355 z-score: 409.9 E(): 1.7e-15%2C 31.2%25 identity in 340 aa overlap. 27.7%25 identity in 260 aa overlap to HP0102. Also highly similar to Cj1434c (72.9%25 identity in 457 aa overlap) in N-term%2C and similar to Cj1421c (34.6%25 identity in 127 aa overlap) and Cj1422c (23.5%25 identity in 452 aa overlap) in C-term. Contains Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases%3B~Updated (2006) note: Literature search identified paper giving further information on product function. Specific characterisation still required%2C so putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176;gbkey=CDS;inference=protein motif:Pfam:PF00535;locus_tag=Cj1438c;product=putative sugar transferase;protein_id=CAL35547.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1375103	1375150	.	-	.	ID=id-Cj1438c;Note=PS00225 Crystallins beta and gamma 'Greek key' motif signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00225;locus_tag=Cj1438c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1376843	1377310	.	-	.	ID=id-Cj1438c-2;Note=HMMPfam hit to PF00535%2C Glycosyl transferase%2C score 2.8e-36;gbkey=misc_feature;inference=protein motif:Pfam:PF00535;locus_tag=Cj1438c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1377339	1378445	.	-	.	ID=gene-Cj1439c;Name=glf;gbkey=Gene;gene=glf;gene_biotype=protein_coding;locus_tag=Cj1439c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1377339	1378445	.	-	0	ID=cds-CAL35548.1;Parent=gene-Cj1439c;Dbxref=EnsemblGenomes-Gn:Cj1439c,EnsemblGenomes-Tr:CAL35548,GOA:Q0P8H5,InterPro:IPR004379,InterPro:IPR015899,InterPro:IPR016040,PDB:4MO2,UniProtKB/TrEMBL:Q0P8H5,NCBI_GP:CAL35548.1;Name=CAL35548.1;Note=Original (2000) note: Cj1439c%2C glf%2C probable UDP-galactopyranose mutase%2C len: aa%3B highly simiar to e.g. TR:O86897 (EMBL:AJ006986) Streptococcus pneumoniae polysaccharide capsule bisynthesis cluster UDP-galactopyranose mutase (EC 5.4.99.9) (369 aa)%2C fasta scores%3B opt: 1546 z-score: 1775.3 E(): 0%2C 59.9%25 identity in 364 aa overlap%2C and GLF_ECOLI UDP-galactopyranose mutase (EC 5.4.99.9) (367 aa)%2C fasta scores%3B opt: 1545 z-score: 1774.2 E(): 0%2C 60.8%25 identity in 362 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03275 UDP-galactopyranose mutase identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:8576037%2C PMID:15947206%2C PMID:10672176;gbkey=CDS;gene=glf;inference=protein motif:Pfam:PF03275;locus_tag=Cj1439c;product=UDP-galactopyranose mutase;protein_id=CAL35548.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1377411	1378013	.	-	.	ID=id-Cj1439c;Note=HMMPfam hit to PF03275%2C UDP-galactopyranose mutase%2Cscore 2e-114;gbkey=misc_feature;gene=glf;inference=protein motif:Pfam:PF03275;locus_tag=Cj1439c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1378483	1379706	.	-	.	ID=gene-Cj1440c;Name=Cj1440c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1440c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1378483	1379706	.	-	0	ID=cds-CAL35549.1;Parent=gene-Cj1440c;Dbxref=EnsemblGenomes-Gn:Cj1440c,EnsemblGenomes-Tr:CAL35549,GOA:Q0P8H4,InterPro:IPR001173,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P8H4,NCBI_GP:CAL35549.1;Name=CAL35549.1;Note=Original (2000) note: Cj1440c%2C probable sugar transferase%2C len: 407 aa%3B similar in N-terminus to e.g. TR:O07340 (EMBL:O07340) Streptococcus pneumoniae SS-1%2C4-galactosyltransferase (318 aa)%2C fasta scores%3B opt: 280 z-score: 326.2 E(): 7.5e-11%2C 26.7%25 identity in 374 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00535 Glycos_transf_2%2C Glycosyl transferases%3B~Updated (2006) note: Literature search identified papers giving further information towards product function. Specific characterisation still required%2C so putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176%2C PMID:11422559;gbkey=CDS;inference=protein motif:Pfam:PF00535;locus_tag=Cj1440c;product=putative sugar transferase;protein_id=CAL35549.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1378516	1378584	.	-	.	ID=id-Cj1440c;Note=1 probable transmembrane helix predicted for Cj1440c by TMHMM2.0 at aa 375-397;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1440c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1379044	1379694	.	-	.	ID=id-Cj1440c-2;Note=HMMPfam hit to PF00535%2C Glycosyl transferase%2C score 2.1e-23;gbkey=misc_feature;inference=protein motif:Pfam:PF00535;locus_tag=Cj1440c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1379716	1380897	.	-	.	ID=gene-Cj1441c;Name=kfiD;gbkey=Gene;gene=kfiD;gene_biotype=protein_coding;locus_tag=Cj1441c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1379716	1380897	.	-	0	ID=cds-CAL35550.1;Parent=gene-Cj1441c;Dbxref=EnsemblGenomes-Gn:Cj1441c,EnsemblGenomes-Tr:CAL35550,GOA:Q0P8H3,InterPro:IPR001732,InterPro:IPR008927,InterPro:IPR013328,InterPro:IPR014026,InterPro:IPR014027,InterPro:IPR016040,InterPro:IPR017476,InterPro:IPR028357,UniProtKB/TrEMBL:Q0P8H3,NCBI_GP:CAL35550.1;Name=CAL35550.1;Note=Original (2000) note: Cj1441c%2C kfiD%2C probable UDP-glucose 6-dehydrogenase%2C len: 393 aa%3B similar to many e.g. UDG5_ECOLI UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (392 aa)%2C fasta scores%3B opt: 1386 z-score: 1511.4 E(): 0%2C52.3%25 identity in 392 aa overlap. No Hp match. Contains Pfam match to entry PF00984 UDPG_MGDP_dh%2CUDP-glucose/GDP-mannose dehydrogenase family%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative removed from product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Central intermediary metabolism - Sugar nucleotides%3B~PMID:12851388%2C PMID:9383197%2C PMID:7635844%2CPMID:12392544;gbkey=CDS;gene=kfiD;inference=protein motif:Pfam:PF00984;locus_tag=Cj1441c;product=UDP-glucose 6-dehydrogenase;protein_id=CAL35550.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1379725	1379994	.	-	.	ID=id-Cj1441c;Note=HMMPfam hit to PF03720%2C UDP-glucose/GDP-mannose dehydrogenase%2C score 5.2e-06;gbkey=misc_feature;gene=kfiD;inference=protein motif:Pfam:PF03720;locus_tag=Cj1441c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1380043	1380324	.	-	.	ID=id-Cj1441c-2;Note=HMMPfam hit to PF00984%2C UDP-glucose/GDP-mannose dehydrogenase%2C score 3.7e-29;gbkey=misc_feature;gene=kfiD;inference=protein motif:Pfam:PF00984;locus_tag=Cj1441c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1380352	1380897	.	-	.	ID=id-Cj1441c-3;Note=HMMPfam hit to PF03721%2C UDP-glucose/GDP-mannose dehydrogenase%2C score 3.8e-33;gbkey=misc_feature;gene=kfiD;inference=protein motif:Pfam:PF03721;locus_tag=Cj1441c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1380894	1382528	.	-	.	ID=gene-Cj1442c;Name=Cj1442c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1442c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1380894	1382528	.	-	0	ID=cds-CAL35551.1;Parent=gene-Cj1442c;Dbxref=EnsemblGenomes-Gn:Cj1442c,EnsemblGenomes-Tr:CAL35551,GOA:Q0P8H2,InterPro:IPR019290,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P8H2,NCBI_GP:CAL35551.1;Name=CAL35551.1;Note=Original (2000) note: Cj1442c%2C unknown%2C len: 544 aa%3B no Hp match%3B~Updated (2006) note: Literature search identified papers giving further information about product function. Specific characterisation still required%2C so putative kept within product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:15612919%2C PMID:10672176%2C PMID:11422559;gbkey=CDS;locus_tag=Cj1442c;product=putative sugar transferase;protein_id=CAL35551.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1382528	1383475	.	-	.	ID=gene-Cj1443c;Name=kpsF;gbkey=Gene;gene=kpsF;gene_biotype=protein_coding;locus_tag=Cj1443c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1382528	1383475	.	-	0	ID=cds-CAL35552.1;Parent=gene-Cj1443c;Dbxref=EnsemblGenomes-Gn:Cj1443c,EnsemblGenomes-Tr:CAL35552,GOA:Q0P8H1,InterPro:IPR000644,InterPro:IPR001347,InterPro:IPR004800,UniProtKB/TrEMBL:Q0P8H1,NCBI_GP:CAL35552.1;Name=CAL35552.1;Note=Original (2000) note: Cj1443c%2C kpsF%2C unknown%2C len: 315 aa%3B similar to hypothetical proteins belonging to the kpsF/gutQ family e.g. KSF1_ECOLI KPSF protein (317 aa)%2Cfasta scores%3B opt: 849 z-score: 979.3 E(): 0%2C 46.5%25 identity in 297 aa overlap. 38.7%25 identity to HP1429. Contains 2x Pfam match to entry PF00571 CBS%2C CBS domain%3B~Updated (2006) note: Pfam domain PF01380 SIS domain identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Product function modified to more specific family member. Putative not added to product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:16390329%2C PMID:11956197%2C PMID:10672176;gbkey=CDS;gene=kpsF;inference=protein motif:Pfam:PF01380;locus_tag=Cj1443c;product=D-arabinose 5-phosphate isomerase;protein_id=CAL35552.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1382537	1382683	.	-	.	ID=id-Cj1443c;Note=HMMPfam hit to PF00571%2C CBS domain%2C score 0.0016;gbkey=misc_feature;gene=kpsF;inference=protein motif:Pfam:PF00571;locus_tag=Cj1443c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1382720	1382878	.	-	.	ID=id-Cj1443c-2;Note=HMMPfam hit to PF00571%2C CBS domain%2C score 8.1e-10;gbkey=misc_feature;gene=kpsF;inference=protein motif:Pfam:PF00571;locus_tag=Cj1443c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1382969	1383376	.	-	.	ID=id-Cj1443c-3;Note=HMMPfam hit to PF01380%2C SIS domain%2C score 1.1e-30;gbkey=misc_feature;gene=kpsF;inference=protein motif:Pfam:PF01380;locus_tag=Cj1443c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1383486	1385144	.	-	.	ID=gene-Cj1444c;Name=kpsD;gbkey=Gene;gene=kpsD;gene_biotype=protein_coding;locus_tag=Cj1444c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1383486	1385144	.	-	0	ID=cds-CAL35553.1;Parent=gene-Cj1444c;Dbxref=EnsemblGenomes-Gn:Cj1444c,EnsemblGenomes-Tr:CAL35553,GOA:Q0P8H0,InterPro:IPR003715,InterPro:IPR019554,UniProtKB/TrEMBL:Q0P8H0,NCBI_GP:CAL35553.1;Name=CAL35553.1;Note=Original (2000) note: Cj1444c%2C kpsD%2C probable capsule polysaccharide export system periplasmic protein%2Clen: aa%3B similar to e.g. KSD1_ECOLI polysialic acid transport protein KPSD PREC (558 aa)%2C fasta scores%3B opt: 1187 z-score: 1306.9 E(): 0%2C 36.1%25 identity in 560 aa overlap. Contains probable N-terminal signal sequence. No Hp match%3B~Updated (2006) note: Pfam domain PF02563 Polysaccharide biosynthesis/export protein identified within CDS. Paper identified linking protein to glycoprotein (PMID:Cj12186869). Characterised within Escherichia coli with acceptable identity score. Putative removed from product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:12186869%2C PMID:8021185%2C PMID:16420360%2CPMID:10672176;gbkey=CDS;gene=kpsD;inference=protein motif:Pfam:PF02563;locus_tag=Cj1444c;product=capsule polysaccharide export system periplasmic protein;protein_id=CAL35553.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1384569	1384931	.	-	.	ID=id-Cj1444c;Note=HMMPfam hit to PF02563%2C Polysaccharide biosynthesis/export protei%2C score 2.1e-48;gbkey=misc_feature;gene=kpsD;inference=protein motif:Pfam:PF02563;locus_tag=Cj1444c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1385146	1386264	.	-	.	ID=gene-Cj1445c;Name=kpsE;gbkey=Gene;gene=kpsE;gene_biotype=protein_coding;locus_tag=Cj1445c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1385146	1386264	.	-	0	ID=cds-CAL35554.1;Parent=gene-Cj1445c;Dbxref=EnsemblGenomes-Gn:Cj1445c,EnsemblGenomes-Tr:CAL35554,GOA:Q0P8G9,InterPro:IPR003856,UniProtKB/TrEMBL:Q0P8G9,NCBI_GP:CAL35554.1;Name=CAL35554.1;Note=Original (2000) note: Cj1445c%2C kpsE%2C probable capsule polysaccharide export system inner membrane protein%2C len: 372 aa%3B similar to e.g. KSE1_ECOLI capsule polysaccharide export inner-membrane protein (382 aa)%2Cfasta scores%3B opt: 752 z-score: 755.4 E(): 0%2C 34.2%25 identity in 351 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02706 Chain length determinant protein identified within CDS. Further support given to product function. Two probable transmembrane helices predicted by TMHMM2.0. Characterised within Escherichia coli with acceptable identity score. Putative removed from product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:8253690%2C PMID:7868584%2C PMID:11467848%2CPMID:10672176;gbkey=CDS;gene=kpsE;inference=protein motif:TMHMM:2.0;locus_tag=Cj1445c;product=capsule polysaccharide export system inner membrane protein;protein_id=CAL35554.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1385161	1385229	.	-	.	ID=id-Cj1445c;Note=2 probable transmembrane helices predicted for Cj1445c by TMHMM2.0 at aa 22-44 and 346-368;gbkey=misc_feature;gene=kpsE;inference=protein motif:TMHMM:2.0;locus_tag=Cj1445c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1386133	1386201	.	-	.	ID=id-Cj1445c;Note=2 probable transmembrane helices predicted for Cj1445c by TMHMM2.0 at aa 22-44 and 346-368;gbkey=misc_feature;gene=kpsE;inference=protein motif:TMHMM:2.0;locus_tag=Cj1445c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1385773	1386240	.	-	.	ID=id-Cj1445c-2;Note=HMMPfam hit to PF02706%2C Chain length determinant protein%2C score 0.013;gbkey=misc_feature;gene=kpsE;inference=protein motif:Pfam:PF02706;locus_tag=Cj1445c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1386264	1386926	.	-	.	ID=gene-Cj1447c;Name=kpsT;gbkey=Gene;gene=kpsT;gene_biotype=protein_coding;locus_tag=Cj1447c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1386264	1386926	.	-	0	ID=cds-CAL35555.1;Parent=gene-Cj1447c;Dbxref=EnsemblGenomes-Gn:Cj1447c,EnsemblGenomes-Tr:CAL35555,GOA:Q0P8G8,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P8G8,NCBI_GP:CAL35555.1;Name=CAL35555.1;Note=Original (2000) note: Cj1447c%2C kpsT%2C probable capsule polysaccharide export ATP-binding protein%2C len: 220 aa%3B identical to TR:O69286 (EMBL:AJ000856) C. jejuni ABC transporter protein (220 aa)%2C and highly similar to e.g. KST1_ECOLI polysialic acid transport ATP-binding protein (219 aa)%2C fasta scores%3B opt: 810 z-score: 945.3 E(): 0%2C 58.7%25 identity in 218 aa overlap. No Hp ortholog. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2CPS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Putative removed from product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2Clipopolysaccharides and antigens%3B~PMID:12855177%2C PMID:9802032%2C PMID:10672176%2CPMID:11359581;gbkey=CDS;gene=kpsT;inference=protein motif:Prosite:PS00211;locus_tag=Cj1447c;product=capsule polysaccharide export ATP-binding protein;protein_id=CAL35555.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1386324	1386833	.	-	.	ID=id-Cj1447c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 8.2e-21;gbkey=misc_feature;gene=kpsT;inference=protein motif:Pfam:PF00005;locus_tag=Cj1447c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1386504	1386548	.	-	.	ID=id-Cj1447c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=kpsT;inference=protein motif:Prosite:PS00211;locus_tag=Cj1447c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1386789	1386812	.	-	.	ID=id-Cj1447c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=kpsT;inference=protein motif:Prosite:PS00017;locus_tag=Cj1447c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1386923	1387705	.	-	.	ID=gene-Cj1448c;Name=kpsM;gbkey=Gene;gene=kpsM;gene_biotype=protein_coding;locus_tag=Cj1448c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1386923	1387705	.	-	0	ID=cds-CAL35556.1;Parent=gene-Cj1448c;Dbxref=EnsemblGenomes-Gn:Cj1448c,EnsemblGenomes-Tr:CAL35556,GOA:Q0P8G7,InterPro:IPR000412,InterPro:IPR013525,UniProtKB/TrEMBL:Q0P8G7,NCBI_GP:CAL35556.1;Name=CAL35556.1;Note=Original (2000) note: Cj1448c%2C kpsM%2C probable capsule polysaccharide export system inner membrane protein%2C len: 260 aa%3B identical to TR:O69285 (EMBL:AJ000856) C. jejuni ABC transporter protein (260 aa)%2C and highly similar to e.g. KPM1_ECOLI polysialic acid transport protein KPSM (258 aa)%2C fasta scores%3B opt: 488 z-score: 558.3 E(): 8.9e-24%2C 34.3%25 identity in 254 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01061 ABC-2 type transporter identified within CDS. Further support given to product function. Also%2C six probable transmembrane helices predicted by TMHMM2.0. Characterised within Escherichia coli and Campylobacter jejuni with acceptable identity scores. Putative not added to product function. Identifed as part of Campylobacter jejuni capsule locus (Cj1413c - Cj1448c). Functional classification - Surface polysaccharides%2C lipopolysaccharides and antigens%3B~PMID:7715449%2C PMID:12855177%2C PMID:11500474%2CPMID:11359581%2C PMID:10672176%2C PMID:16436427;gbkey=CDS;gene=kpsM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1448c;product=capsule polysaccharide export system inner membrane protein;protein_id=CAL35556.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1386959	1387027	.	-	.	ID=id-Cj1448c;Note=6 probable transmembrane helices predicted for Cj1448c by TMHMM2.0 at aa 24-46%2C 56-78%2C 107-129%2C 144-166%2C171-193 and 227-249;gbkey=misc_feature;gene=kpsM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1448c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1387127	1387195	.	-	.	ID=id-Cj1448c;Note=6 probable transmembrane helices predicted for Cj1448c by TMHMM2.0 at aa 24-46%2C 56-78%2C 107-129%2C 144-166%2C171-193 and 227-249;gbkey=misc_feature;gene=kpsM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1448c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1387208	1387276	.	-	.	ID=id-Cj1448c;Note=6 probable transmembrane helices predicted for Cj1448c by TMHMM2.0 at aa 24-46%2C 56-78%2C 107-129%2C 144-166%2C171-193 and 227-249;gbkey=misc_feature;gene=kpsM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1448c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1387319	1387387	.	-	.	ID=id-Cj1448c;Note=6 probable transmembrane helices predicted for Cj1448c by TMHMM2.0 at aa 24-46%2C 56-78%2C 107-129%2C 144-166%2C171-193 and 227-249;gbkey=misc_feature;gene=kpsM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1448c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1387472	1387540	.	-	.	ID=id-Cj1448c;Note=6 probable transmembrane helices predicted for Cj1448c by TMHMM2.0 at aa 24-46%2C 56-78%2C 107-129%2C 144-166%2C171-193 and 227-249;gbkey=misc_feature;gene=kpsM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1448c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1387568	1387636	.	-	.	ID=id-Cj1448c;Note=6 probable transmembrane helices predicted for Cj1448c by TMHMM2.0 at aa 24-46%2C 56-78%2C 107-129%2C 144-166%2C171-193 and 227-249;gbkey=misc_feature;gene=kpsM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1448c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1387052	1387699	.	-	.	ID=id-Cj1448c-2;Note=HMMPfam hit to PF01061%2C ABC-2 type transporter%2Cscore 5.2e-10;gbkey=misc_feature;gene=kpsM;inference=protein motif:Pfam:PF01061;locus_tag=Cj1448c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1387777	1388184	.	-	.	ID=gene-Cj1449c;Name=Cj1449c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1449c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1387777	1388184	.	-	0	ID=cds-CAL35557.1;Parent=gene-Cj1449c;Dbxref=EnsemblGenomes-Gn:Cj1449c,EnsemblGenomes-Tr:CAL35557,GOA:Q9PML1,InterPro:IPR011194,InterPro:IPR012349,NCBI_GP:CAL35557.1;Name=CAL35557.1;Note=Original (2000) note: Cj1449c%2C unknown%2C len: 135 aa%3B similar to YHBP_ECOLI hypothetical protein (147 aa)%2Cfasta scores%3B opt: 236 z-score: 315.0 E(): 3.2e-10%2C 30.5%25 identity in 131 aa overlap. No Hp match. Functional classification - Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1449c;product=hypothetical protein Cj1449c;protein_id=CAL35557.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1388259	1388822	.	+	.	ID=gene-Cj1450;Name=Cj1450;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1450
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1388259	1388822	.	+	0	ID=cds-CAL35558.1;Parent=gene-Cj1450;Dbxref=EnsemblGenomes-Gn:Cj1450,EnsemblGenomes-Tr:CAL35558,UniProtKB/TrEMBL:Q0P8G5,NCBI_GP:CAL35558.1;Name=CAL35558.1;Note=Original (2000) note: Cj1450%2C probable ATP/GTP-binding protein%2C len: 187 aa%3B no Hp match. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2Cand probable coiled-coil domain at C-terminus (aa 150-175)%3B~Updated (2006) note: Literature search identified paper giving further clues to product function. Functional classification - Unknown%3B~PMID:16740937;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj1450;product=putative ATP/GTP-binding protein;protein_id=CAL35558.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1388364	1388387	.	+	.	ID=id-Cj1450;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1450
gi|15791399|ref|NC_002163.1|	EMBL	gene	1388859	1389548	.	+	.	ID=gene-Cj1451;Name=dut;gbkey=Gene;gene=dut;gene_biotype=protein_coding;locus_tag=Cj1451
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1388859	1389548	.	+	0	ID=cds-CAL35559.1;Parent=gene-Cj1451;Dbxref=EnsemblGenomes-Gn:Cj1451,EnsemblGenomes-Tr:CAL35559,GOA:Q0P8G4,InterPro:IPR014871,PDB:1W2Y,PDB:2CIC,UniProtKB/TrEMBL:Q0P8G4,NCBI_GP:CAL35559.1;Name=CAL35559.1;Note=Original (2000) note: Cj1451%2C dut%2C possible dUTPase%2C len: 229 aa%3B similar to two enzymes of eukaryotic origin e.g. TR:O15826 (EMBL:L76742) Leishmania major characterised dUTPase (EC 3.6.1.23) (dUTP pyrophosphatase) (268 aa)%2C fasta scores%3B opt: 311 z-score: 382.3 E(): 5.7e-14%2C 33.6%25 identity in 226 aa overlap%2C and TR:O15923 (EMBL:U93211) Trypanosoma cruzi deoxyuridine triphosphatase (283 aa)%2C fasta scores%3B opt: 198 z-score: 246.6 E(): 2.1e-06%2C 32.9%25 identity in 228 aa overlap. No Hp match. C.j. does not have a homolog of the E. coli dut gene. H.p. has an E. coli-like dut gene%3B~Updated (2006) note: Characterisation work carried out within Campylobacter jejuni. Putative removed from product function. Functional classification -2'-deoxyribonucleotide biosynthesis%3B~PMID:15364583;gbkey=CDS;gene=dut;locus_tag=Cj1451;product=dUTPase;protein_id=CAL35559.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1389550	1390263	.	+	.	ID=gene-Cj1452;Name=Cj1452;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1452
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1389550	1390263	.	+	0	ID=cds-CAL35560.1;Parent=gene-Cj1452;Dbxref=EnsemblGenomes-Gn:Cj1452,EnsemblGenomes-Tr:CAL35560,UniProtKB/TrEMBL:Q0P8G3,NCBI_GP:CAL35560.1;Name=CAL35560.1;Note=Original (2000) note: Cj1452%2C possible integral membrane protein%2C len: 237 aa%3B 29.7%25 identity to HP0174. Contains four large hydrophobic domains%3B~Updated (2006) note: Pfam domain PF04401 Protein of unknown function (DUF540) identified within CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Pfam:PF04401;locus_tag=Cj1452;product=putative integral membrane protein;protein_id=CAL35560.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1389607	1389675	.	+	.	ID=id-Cj1452;Note=5 probable transmembrane helices predicted for Cj1452 by TMHMM2.0 at aa 20-42%2C 57-79%2C 81-103%2C 136-158 and 201-223;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1452;part=1/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1389718	1389786	.	+	.	ID=id-Cj1452;Note=5 probable transmembrane helices predicted for Cj1452 by TMHMM2.0 at aa 20-42%2C 57-79%2C 81-103%2C 136-158 and 201-223;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1452;part=2/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1389790	1389858	.	+	.	ID=id-Cj1452;Note=5 probable transmembrane helices predicted for Cj1452 by TMHMM2.0 at aa 20-42%2C 57-79%2C 81-103%2C 136-158 and 201-223;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1452;part=3/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1389955	1390023	.	+	.	ID=id-Cj1452;Note=5 probable transmembrane helices predicted for Cj1452 by TMHMM2.0 at aa 20-42%2C 57-79%2C 81-103%2C 136-158 and 201-223;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1452;part=4/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1390150	1390218	.	+	.	ID=id-Cj1452;Note=5 probable transmembrane helices predicted for Cj1452 by TMHMM2.0 at aa 20-42%2C 57-79%2C 81-103%2C 136-158 and 201-223;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1452;part=5/5;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1389658	1390242	.	+	.	ID=id-Cj1452-2;Note=HMMPfam hit to PF04401%2C Protein of unknown function (DUF540)%2C score 3e-75;gbkey=misc_feature;inference=protein motif:Pfam:PF04401;locus_tag=Cj1452
gi|15791399|ref|NC_002163.1|	EMBL	gene	1390246	1391211	.	-	.	ID=gene-Cj1453c;Name=tilS;gbkey=Gene;gene=tilS;gene_biotype=protein_coding;locus_tag=Cj1453c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1390246	1391211	.	-	0	ID=cds-CAL35561.1;Parent=gene-Cj1453c;Dbxref=EnsemblGenomes-Gn:Cj1453c,EnsemblGenomes-Tr:CAL35561,GOA:Q9PMK7,InterPro:IPR011063,InterPro:IPR012094,InterPro:IPR012795,InterPro:IPR014729,NCBI_GP:CAL35561.1;Name=CAL35561.1;Note=Original (2000) note: Cj1453c%2C unknown%2C len: 321 aa%3B similar to hypothetical proteins e.g. YACA_BACSU (486 aa)%2C fasta scores%3B opt: 290 z-score: 342.2 E(): 9.7e-12%2C26.8%25 identity in 257 aa overlap. 40.7%25 identity to HP0728%3B~Updated (2006) note: Pfam domain PF01171 PP-loop family identified within CDS. Characterisation work has been carried out within Escherichia coli and Bacillus subtilis and has been designated as tRNA(Ile)-lysidine synthase. Product modified to more specific famlily member. Identity scores were marginal%2C so putative kept within product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:14527414%2C PMID:15894617%2C PMID:16039592;gbkey=CDS;gene=tilS;inference=protein motif:Pfam:PF01171;locus_tag=Cj1453c;product=putative tRNA(Ile)-lysidine synthase;protein_id=CAL35561.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1390588	1391169	.	-	.	ID=id-Cj1453c;Note=HMMPfam hit to PF01171%2C PP-loop family%2C score 6.8e-90;gbkey=misc_feature;gene=tilS;inference=protein motif:Pfam:PF01171;locus_tag=Cj1453c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1391201	1392520	.	-	.	ID=gene-Cj1454c;Name=Cj1454c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1454c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1391201	1392520	.	-	0	ID=cds-CAL35562.1;Parent=gene-Cj1454c;Dbxref=EnsemblGenomes-Gn:Cj1454c,EnsemblGenomes-Tr:CAL35562,GOA:Q0P8G1,InterPro:IPR005839,InterPro:IPR005840,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013848,InterPro:IPR020612,InterPro:IPR023404,InterPro:IPR023970,NCBI_GP:CAL35562.1;Name=CAL35562.1;Note=Original (2000) note: Cj1454c%2C unknown%2C len: 439 aa%3B similar to hypothetical proteins e.g. YLIG_ECOLI (441 aa)%2C fasta scores%3B opt: 671 z-score: 748.3 E(): 0%2C 34.2%25 identity in 433 aa overlap. 52.1%25 identity to HP0734. Also similar to Cj1006c (28.6%25 identity in 419 aa overlap)%2C and Cj0458c (26.7%25 identity in 371 aa overlap). Contains PS01278 Uncharacterized protein family UPF0004 signature%2Cand Pfam match to entry PF00919 UPF0004%2C Uncharacterized protein family UPF0004%3B~Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily identified within CDS. Product function modified to modified to more specific family member. No specific characterisation identified yet%2C so putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS01278;locus_tag=Cj1454c;product=putative radical SAM domain family protein;protein_id=CAL35562.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1391588	1392103	.	-	.	ID=id-Cj1454c;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 4.3e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF04055;locus_tag=Cj1454c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1392041	1392103	.	-	.	ID=id-Cj1454c-2;Note=PS01278 Uncharacterized protein family UPF0004 signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01278;locus_tag=Cj1454c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1392227	1392514	.	-	.	ID=id-Cj1454c-3;Note=HMMPfam hit to PF00919%2C Uncharacterized protein family UPF0004%2C score 9e-37;gbkey=misc_feature;inference=protein motif:Pfam:PF00919;locus_tag=Cj1454c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1392594	1393691	.	+	.	ID=gene-Cj1455;Name=prfB;gbkey=Gene;gene=prfB;gene_biotype=protein_coding;locus_tag=Cj1455
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1392594	1393691	.	+	0	ID=cds-CAL35563.1;Parent=gene-Cj1455;Dbxref=EnsemblGenomes-Gn:Cj1455,EnsemblGenomes-Tr:CAL35563,GOA:Q9PMK5,InterPro:IPR000352,InterPro:IPR004374,InterPro:IPR005139,InterPro:IPR014720,InterPro:IPR020853,NCBI_GP:CAL35563.1;Name=CAL35563.1;Note=Original (2000) note: Cj1455%2C prfB%2C probable peptide chain release factor 2%2C len: 365 aa%3B similar to e.g. RF2_BACSU peptide chain release factor 2 (366 aa)%2Cfasta scores%3B opt: 1138 z-score: 1344.5 E(): 0%2C 49.2%25 identity in 364 aa overlap. 67.9%25 identity to HP0171. Also similar to Cj1612 prfA (37.0%25 identity in 354 aa overlap). Contains PS00745 Prokaryotic-type class I peptide chain release factors signature%2C and Pfam match to entry PF00472 RF-1%2C Prokaryotic-type class I peptide chain release factors%3B~Updated (2006) note: Characterised in Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Protein translation and modification%3B~PMID:9696765%2C PMID:3889910;gbkey=CDS;gene=prfB;inference=protein motif:Prosite:PS00745;locus_tag=Cj1455;product=peptide chain release factor 2;protein_id=CAL35563.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1392843	1393175	.	+	.	ID=id-Cj1455;Note=HMMPfam hit to PF03462%2C PCRF domain%2C score 2.7e-50;gbkey=misc_feature;gene=prfB;inference=protein motif:Pfam:PF03462;locus_tag=Cj1455
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1393269	1393598	.	+	.	ID=id-Cj1455-2;Note=HMMPfam hit to PF00472%2C Peptidyl-tRNA hydrolase domain%2C score 2e-67;gbkey=misc_feature;gene=prfB;inference=protein motif:Pfam:PF00472;locus_tag=Cj1455
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1393323	1393373	.	+	.	ID=id-Cj1455-3;Note=PS00745 Prokaryotic-type class I peptide chain release factors signature;gbkey=misc_feature;gene=prfB;inference=protein motif:Prosite:PS00745;locus_tag=Cj1455
gi|15791399|ref|NC_002163.1|	EMBL	gene	1393849	1394163	.	-	.	ID=gene-Cj1456c;Name=Cj1456c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1456c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1393849	1394163	.	-	0	ID=cds-CAL35564.1;Parent=gene-Cj1456c;Dbxref=EnsemblGenomes-Gn:Cj1456c,EnsemblGenomes-Tr:CAL35564,UniProtKB/TrEMBL:Q0P8F9,NCBI_GP:CAL35564.1;Name=CAL35564.1;Note=Original (2000) note: Cj1456c%2C probable periplasmic protein%2C len: 104 aa%3B no Hp match. Contains possible N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1456c;product=putative periplasmic protein;protein_id=CAL35564.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1394285	1395403	.	-	.	ID=gene-Cj1457c;Name=truD;gbkey=Gene;gene=truD;gene_biotype=protein_coding;locus_tag=Cj1457c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1394285	1395403	.	-	0	ID=cds-CAL35565.1;Parent=gene-Cj1457c;Dbxref=EnsemblGenomes-Gn:Cj1457c,EnsemblGenomes-Tr:CAL35565,GOA:Q9PMK3,InterPro:IPR001656,InterPro:IPR011760,InterPro:IPR020103,InterPro:IPR020119,NCBI_GP:CAL35565.1;Name=CAL35565.1;Note=Original (2000) note: Cj1457c%2C unknown%2C len: 372 aa%3B similar to hypothetical proteins e.g. YGBO_ECOLI (349 aa)%2C fasta scores%3B opt: 345 z-score: 393.7 E(): 1.3e-14%2C29.1%25 identity in 368 aa overlap. 44.5%25 identity to HP0926. Contains Pfam match to entry PF01142 UPF0024%2CUncharacterized protein family UPF0024%3B~Updated (2006) note: Pfam domain PF01142 tRNA pseudouridine synthase D (TruD) identified within CDS. Characterised within Escherichia coli with marginal identity score. Appropriate motifs present. Product function modified to more specific family member. Putative not added to product function. Functional classification -Ribosome maturation and modification%3B~PMID:15039583%2C PMID:12756329%2C PMID:15208439;gbkey=CDS;gene=truD;inference=protein motif:Pfam:PF01142;locus_tag=Cj1457c;product=tRNA pseudouridine synthase D;protein_id=CAL35565.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1394294	1395376	.	-	.	ID=id-Cj1457c;Note=HMMPfam hit to PF01142%2C tRNA pseudouridine synthase D (TruD)%2C score 7.8e-165;gbkey=misc_feature;gene=truD;inference=protein motif:Pfam:PF01142;locus_tag=Cj1457c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1395372	1396193	.	-	.	ID=gene-Cj1458c;Name=thiL;gbkey=Gene;gene=thiL;gene_biotype=protein_coding;locus_tag=Cj1458c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1395372	1396193	.	-	0	ID=cds-CAL35566.1;Parent=gene-Cj1458c;Dbxref=EnsemblGenomes-Gn:Cj1458c,EnsemblGenomes-Tr:CAL35566,GOA:Q0P8F7,InterPro:IPR000728,InterPro:IPR006283,InterPro:IPR010918,InterPro:IPR016188,UniProtKB/TrEMBL:Q0P8F7,NCBI_GP:CAL35566.1;Name=CAL35566.1;Note=Original (2000) note: Cj1458c%2C thiL%2C possible thiamin-monophosphate kinase%2C len: 273 aa%3B some simlarity to many e.g. THIL_ECOLI thiamin-monophosphate kinase (EC 2.7.4.16) (325 aa)%2C fasta scores%3B opt: 251 z-score: 303.0 E(): 1.5e-09%2C 27.7%25 identity in 271 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02769 AIR synthase related protein%2C C-terminal domain was identified within CDS. Further support given to product function. Specific characterisation with acceptable identity score has not been carried out%2C so putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Thiamine%3B~PMID:9188462%2C PMID:10382260;gbkey=CDS;gene=thiL;inference=protein motif:Pfam:PF02769;locus_tag=Cj1458c;product=putative thiamin-monophosphate kinase;protein_id=CAL35566.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1395384	1395788	.	-	.	ID=id-Cj1458c;Note=HMMPfam hit to PF02769%2C AIR synthase related protein%2C C-terminal dom%2C score 0.0019;gbkey=misc_feature;gene=thiL;inference=protein motif:Pfam:PF02769;locus_tag=Cj1458c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1396280	1397353	.	+	.	ID=gene-Cj1459;Name=Cj1459;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1459
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1396280	1397353	.	+	0	ID=cds-CAL35567.1;Parent=gene-Cj1459;Dbxref=EnsemblGenomes-Gn:Cj1459,EnsemblGenomes-Tr:CAL35567,GOA:Q0P8F6,InterPro:IPR001041,UniProtKB/TrEMBL:Q0P8F6,NCBI_GP:CAL35567.1;Name=CAL35567.1;Note=Original (2000) note: Cj1459%2C unknown%2C len: 357 aa%3B 24.8%25 identity to HP0468. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1459;product=hypothetical protein Cj1459;protein_id=CAL35567.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1397350	1397733	.	+	.	ID=gene-Cj1460;Name=Cj1460;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1460
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1397350	1397733	.	+	0	ID=cds-CAL35568.1;Parent=gene-Cj1460;Dbxref=EnsemblGenomes-Gn:Cj1460,EnsemblGenomes-Tr:CAL35568,UniProtKB/TrEMBL:Q0P8F5,NCBI_GP:CAL35568.1;Name=CAL35568.1;Note=Original (2000) note: Cj1460%2C unknown%2C len: 127 aa%3B 41.0%25 identity to HP0811. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1460;product=hypothetical protein Cj1460;protein_id=CAL35568.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1397726	1398409	.	+	.	ID=gene-Cj1461;Name=Cj1461;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1461
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1397726	1398409	.	+	0	ID=cds-CAL35569.1;Parent=gene-Cj1461;Dbxref=EnsemblGenomes-Gn:Cj1461,EnsemblGenomes-Tr:CAL35569,GOA:Q0P8F4,InterPro:IPR004398,InterPro:IPR029063,UniProtKB/TrEMBL:Q0P8F4,NCBI_GP:CAL35569.1;Name=CAL35569.1;Note=Original (2000) note: Cj1461%2C possible DNA methylase%2C len: 227 aa%3B similar to hypothetical proteins e.g. YHHF_ECOLI (198 aa)%2C fasta scores%3B opt: 186 z-score: 224.4 E(): 3.5e-05%2C 27.1%25 identity in 181 aa overlap. 37.2%25 identity to HP0810. Contains PS00092 N-6 Adenine-specific DNA methylases signature%3B~Updated (2006) note: Pfam domain PF03602 Conserved hypothetical protein identified within CDS. Specific characterisation with acceptable identity score has not been carried out yet%2C so putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Prosite:PS00092;locus_tag=Cj1461;product=putative DNA methylase;protein_id=CAL35569.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1397855	1398403	.	+	.	ID=id-Cj1461;Note=HMMPfam hit to PF03602%2C Conserved hypothetical protein%2C score 5.6e-69;gbkey=misc_feature;inference=protein motif:Pfam:PF03602;locus_tag=Cj1461
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1398197	1398217	.	+	.	ID=id-Cj1461-2;Note=PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00092;locus_tag=Cj1461
gi|15791399|ref|NC_002163.1|	EMBL	gene	1398468	1399514	.	+	.	ID=gene-Cj1462;Name=flgI;gbkey=Gene;gene=flgI;gene_biotype=protein_coding;locus_tag=Cj1462
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1398468	1399514	.	+	0	ID=cds-CAL35570.1;Parent=gene-Cj1462;Dbxref=EnsemblGenomes-Gn:Cj1462,EnsemblGenomes-Tr:CAL35570,GOA:Q9PMJ8,InterPro:IPR001782,NCBI_GP:CAL35570.1;Name=CAL35570.1;Note=Original (2000) note: Cj1462%2C flgI%2C probable flagellar P-ring protein%2C len: 348 aa%3B similar to many e.g. FLGI_ECOLI flagellar P-ring protein precursor (365 aa)%2C fasta scores%3B opt: 703 z-score: 757.5 E(): 0%2C 38.8%25 identity in 361 aa overlap. 46.7%25 identity to HP0246. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF02119 Flagellar P-ring protein identified within CDS. Further support given to product function. Characterised within Escherichia coli (PMIM:16740925)%2C with acceptable identity score. Putative not added to product function. Functional classification - Surface structures%3B~PMID:15687208%2C PMID:2544561%2C PMID:3549691%2CPMID:16740925;gbkey=CDS;gene=flgI;inference=protein motif:Pfam:PF02119;locus_tag=Cj1462;product=flagellar P-ring protein;protein_id=CAL35570.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1398519	1399511	.	+	.	ID=id-Cj1462;Note=HMMPfam hit to PF02119%2C Flagellar P-ring protein%2Cscore 1.4e-130;gbkey=misc_feature;gene=flgI;inference=protein motif:Pfam:PF02119;locus_tag=Cj1462
gi|15791399|ref|NC_002163.1|	EMBL	gene	1399514	1399855	.	+	.	ID=gene-Cj1463;Name=flgJ;gbkey=Gene;gene=flgJ;gene_biotype=protein_coding;locus_tag=Cj1463
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1399514	1399855	.	+	0	ID=cds-CAL35571.1;Parent=gene-Cj1463;Dbxref=EnsemblGenomes-Gn:Cj1463,EnsemblGenomes-Tr:CAL35571,InterPro:IPR016511,InterPro:IPR019301,NCBI_GP:CAL35571.1;Name=CAL35571.1;Note=Original (2000) note: Cj1463%2C unknown%2C len: 113 aa%3B 46.0%25 identity to HP0245%3B~Updated (2006) note: Literature search identified papers giving clues to product function. C.Penn unpublished observation has predicted to be FlgJ. Functional classification - Conserved hypothetical proteins%3B~PMID:14617189%2C PMID:14960570%2C PMID:15812042;gbkey=CDS;gene=flgJ;locus_tag=Cj1463;product=hypothetical protein Cj1463;protein_id=CAL35571.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1399918	1400115	.	+	.	ID=gene-Cj1464;Name=flgM;gbkey=Gene;gene=flgM;gene_biotype=protein_coding;locus_tag=Cj1464
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1399918	1400115	.	+	0	ID=cds-CAL35572.1;Parent=gene-Cj1464;Dbxref=EnsemblGenomes-Gn:Cj1464,EnsemblGenomes-Tr:CAL35572,GOA:Q0P8F1,InterPro:IPR007412,UniProtKB/TrEMBL:Q0P8F1,NCBI_GP:CAL35572.1;Name=CAL35572.1;Note=Original (2000) note: Cj1464%2C unknown%2C len: 65 aa%3B no Hp match%3B~Updated (2006) note: Literature search identified papers giving further clues to product function. Has been linked to flagellar anti FliA (sigma 28) factor FlgM protein. Functional classification - Unknown%3B~PMID:14617189%2C PMID:14702320%2C PMID:14985343;gbkey=CDS;gene=flgM;locus_tag=Cj1464;product=hypothetical protein Cj1464;protein_id=CAL35572.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1400158	1400592	.	+	.	ID=gene-Cj1465;Name=Cj1465;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1465
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1400158	1400592	.	+	0	ID=cds-CAL35573.1;Parent=gene-Cj1465;Dbxref=EnsemblGenomes-Gn:Cj1465,EnsemblGenomes-Tr:CAL35573,GOA:Q0P8F0,InterPro:IPR007809,UniProtKB/TrEMBL:Q0P8F0,NCBI_GP:CAL35573.1;Name=CAL35573.1;Note=Original (2000) note: Cj1465%2C unknown%2C len: 144 aa%3B 31.9%25 identity to HP1120%3B~Updated (2006) note: Literature search identified paper giving clues to product function. Product function linked to possible flagellar gene. Similar story for uncharacterised upstream genes Cj1463 and Cj1464. Functional classification - Conserved hypothetical proteins%3B~PMID:14702320;gbkey=CDS;locus_tag=Cj1465;product=hypothetical protein Cj1465;protein_id=CAL35573.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1400602	1402428	.	+	.	ID=gene-Cj1466;Name=flgK;gbkey=Gene;gene=flgK;gene_biotype=protein_coding;locus_tag=Cj1466
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1400602	1402428	.	+	0	ID=cds-CAL35574.1;Parent=gene-Cj1466;Dbxref=EnsemblGenomes-Gn:Cj1466,EnsemblGenomes-Tr:CAL35574,GOA:Q0P8E9,InterPro:IPR001444,InterPro:IPR002371,InterPro:IPR010930,UniProtKB/TrEMBL:Q0P8E9,NCBI_GP:CAL35574.1;Name=CAL35574.1;Note=Original (2000) note: Cj1466%2C flgK%2C possible flagellar hook-associated protein%2C len: 608 aa%3B some similarity to e.g. FLGK_ECOLI flagellar hook-associated protein 1 (546 aa)%2C fasta scores%3B opt: 261 z-score: 274.8 E(): 5.5e-08%2C 22.9%25 identity in 612 aa overlap. 36.4%25 identity to HP1119. Contains Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%3B~Updated (2006) note: Characterisation has been carried out within Salmonella spp. however%2C identity scores were unnacceptable%2C so putative kept within product function. Functional classification - Surface structures%3B~PMID:12940991;gbkey=CDS;gene=flgK;inference=protein motif:Pfam:PF00460;locus_tag=Cj1466;product=putative flagellar hook-associated protein;protein_id=CAL35574.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1400620	1400712	.	+	.	ID=id-Cj1466;Note=HMMPfam hit to PF00460%2C Flagella basal body rod protein%2C score 2.1e-05;gbkey=misc_feature;gene=flgK;inference=protein motif:Pfam:PF00460;locus_tag=Cj1466
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1402303	1402419	.	+	.	ID=id-Cj1466-2;Note=HMMPfam hit to PF06429%2C Domain of unknown function (DUF1078)%2C score 6.6e-18;gbkey=misc_feature;gene=flgK;inference=protein motif:Pfam:PF06429;locus_tag=Cj1466
gi|15791399|ref|NC_002163.1|	EMBL	gene	1402445	1403209	.	+	.	ID=gene-Cj1467;Name=Cj1467;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1467
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1402445	1403209	.	+	0	ID=cds-CAL35575.1;Parent=gene-Cj1467;Dbxref=EnsemblGenomes-Gn:Cj1467,EnsemblGenomes-Tr:CAL35575,GOA:Q0P8E8,InterPro:IPR011257,InterPro:IPR014127,UniProtKB/TrEMBL:Q0P8E8,NCBI_GP:CAL35575.1;Name=CAL35575.1;Note=Original (2000) note: Cj1467%2C unknown%2C len: 254 aa%3B some similarity to TR:O51480 (EMBL:AE001154) Borrelia burgdorferi BB0530 (217 aa)%2C fasta scores%3B opt: 331 z-score: 404.6 E(): 3.2e-15%2C 32.8%25 identity in 189 aa overlap. No Hp match. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1467;product=hypothetical protein Cj1467;protein_id=CAL35575.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1403213	1403977	.	+	.	ID=gene-Cj1468;Name=Cj1468;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1468
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1403213	1403977	.	+	0	ID=cds-CAL35576.1;Parent=gene-Cj1468;Dbxref=EnsemblGenomes-Gn:Cj1468,EnsemblGenomes-Tr:CAL35576,GOA:Q0P8E7,InterPro:IPR002781,UniProtKB/TrEMBL:Q0P8E7,NCBI_GP:CAL35576.1;Name=CAL35576.1;Note=Original (2000) note: Cj1468%2C probable integral membrane protein%2C len: 254 aa%3B similar to hypothetical membrane proteins e.g. YFCA_ECOLI (269 aa)%2C fasta scores%3B opt: 612 z-score: 731.5 E(): 0%2C 43.4%25 identity in 242 aa overlap. No Hp ortholog%3B~Updated (2006) note: Pfam domain PF01925 Domain of unknown function DUF81 identified within CDS. Also%2C seven probable transmembrane helices predicted by TMHMM2.0. Furhter support given to product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1468;product=putative integral membrane protein;protein_id=CAL35576.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1403231	1403299	.	+	.	ID=id-Cj1468;Note=7 probable transmembrane helices predicted for Cj1468 by TMHMM2.0 at aa 7-29%2C 76-98%2C 105-122%2C 149-171%2C183-200%2C 204-226 and 233-250;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1468;part=1/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1403438	1403506	.	+	.	ID=id-Cj1468;Note=7 probable transmembrane helices predicted for Cj1468 by TMHMM2.0 at aa 7-29%2C 76-98%2C 105-122%2C 149-171%2C183-200%2C 204-226 and 233-250;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1468;part=2/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1403525	1403578	.	+	.	ID=id-Cj1468;Note=7 probable transmembrane helices predicted for Cj1468 by TMHMM2.0 at aa 7-29%2C 76-98%2C 105-122%2C 149-171%2C183-200%2C 204-226 and 233-250;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1468;part=3/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1403657	1403725	.	+	.	ID=id-Cj1468;Note=7 probable transmembrane helices predicted for Cj1468 by TMHMM2.0 at aa 7-29%2C 76-98%2C 105-122%2C 149-171%2C183-200%2C 204-226 and 233-250;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1468;part=4/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1403759	1403812	.	+	.	ID=id-Cj1468;Note=7 probable transmembrane helices predicted for Cj1468 by TMHMM2.0 at aa 7-29%2C 76-98%2C 105-122%2C 149-171%2C183-200%2C 204-226 and 233-250;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1468;part=5/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1403822	1403890	.	+	.	ID=id-Cj1468;Note=7 probable transmembrane helices predicted for Cj1468 by TMHMM2.0 at aa 7-29%2C 76-98%2C 105-122%2C 149-171%2C183-200%2C 204-226 and 233-250;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1468;part=6/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1403909	1403962	.	+	.	ID=id-Cj1468;Note=7 probable transmembrane helices predicted for Cj1468 by TMHMM2.0 at aa 7-29%2C 76-98%2C 105-122%2C 149-171%2C183-200%2C 204-226 and 233-250;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1468;part=7/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1403246	1403959	.	+	.	ID=id-Cj1468-2;Note=HMMPfam hit to PF01925%2C Domain of unknown function DUF81%2C score 5.8e-34;gbkey=misc_feature;inference=protein motif:Pfam:PF01925;locus_tag=Cj1468
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1403306	1403338	.	+	.	ID=id-Cj1468-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1468
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1403678	1403710	.	+	.	ID=id-Cj1468-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1468
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	1403970	1405150	.	-	.	ID=gene-Cj1470c;Name=Cj1470c;gbkey=Gene;gene_biotype=pseudogene;locus_tag=Cj1470c;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1404347	1405150	.	-	0	ID=cds-Cj1470c;Parent=gene-Cj1470c;Dbxref=PSEUDO:CAL35577.1;Note=Original (2000) note: Cj1470c%2C probable type II protein secretion system F protein pseudogene%2C len: 1178 bp%3B similar to e.g. HOFC_ECOLI protein transport protein HOFC (400 aa) (22.7%25 identity)and GSPF_PSEAE general secretion pathway protein F (405 aa) (23.0%25 identity). Contains Pfam match to entry PF00482 GSPII_F%2C Bacterial type II secretion system protein F domain. No Hp match%3B~Updated (2006) note: Pfam domain PF00482 Bacterial type II secretion system protein F domain identified within CDS. Also%2C four probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterisation paper within Campylobacter attached. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Protein and peptide secretion%3B~PMID:12949093;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1470c;product=pesudogene (type II protein secretion system F protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1403970	1404347	.	-	0	ID=cds-Cj1470c;Parent=gene-Cj1470c;Dbxref=PSEUDO:CAL35577.1;Note=Original (2000) note: Cj1470c%2C probable type II protein secretion system F protein pseudogene%2C len: 1178 bp%3B similar to e.g. HOFC_ECOLI protein transport protein HOFC (400 aa) (22.7%25 identity)and GSPF_PSEAE general secretion pathway protein F (405 aa) (23.0%25 identity). Contains Pfam match to entry PF00482 GSPII_F%2C Bacterial type II secretion system protein F domain. No Hp match%3B~Updated (2006) note: Pfam domain PF00482 Bacterial type II secretion system protein F domain identified within CDS. Also%2C four probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterisation paper within Campylobacter attached. Thus%2C putative not added to product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Protein and peptide secretion%3B~PMID:12949093;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1470c;product=pesudogene (type II protein secretion system F protein);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1404015	1404083	.	-	.	ID=id-Cj1470c;Note=4 probable transmembrane helices predicted for Cj1470c by TMHMM2.0 at aa 156-178%2C 209-231%2C 246-268 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1470c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1404347	1404347	.	-	.	ID=id-Cj1470c;Note=4 probable transmembrane helices predicted for Cj1470c by TMHMM2.0 at aa 156-178%2C 209-231%2C 246-268 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1470c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1404347	1404415	.	-	.	ID=id-Cj1470c;Note=4 probable transmembrane helices predicted for Cj1470c by TMHMM2.0 at aa 156-178%2C 209-231%2C 246-268 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1470c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1404458	1404526	.	-	.	ID=id-Cj1470c;Note=4 probable transmembrane helices predicted for Cj1470c by TMHMM2.0 at aa 156-178%2C 209-231%2C 246-268 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1470c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1404617	1404685	.	-	.	ID=id-Cj1470c;Note=4 probable transmembrane helices predicted for Cj1470c by TMHMM2.0 at aa 156-178%2C 209-231%2C 246-268 and 357-379;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1470c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1404006	1404347	.	-	.	ID=id-Cj1470c-2;Note=HMMPfam hit to PF00482%2C Bacterial type II secretion system protein F%2C score 2.4e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF00482;locus_tag=Cj1470c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1404347	1404373	.	-	.	ID=id-Cj1470c-2;Note=HMMPfam hit to PF00482%2C Bacterial type II secretion system protein F%2C score 2.4e-15;gbkey=misc_feature;inference=protein motif:Pfam:PF00482;locus_tag=Cj1470c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1404614	1404973	.	-	.	ID=id-Cj1470c-3;Note=HMMPfam hit to PF00482%2C Bacterial type II secretion system protein F%2C score 5.9e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF00482;locus_tag=Cj1470c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1405147	1406706	.	-	.	ID=gene-Cj1471c;Name=ctsE;gbkey=Gene;gene=ctsE;gene_biotype=protein_coding;locus_tag=Cj1471c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1405147	1406706	.	-	0	ID=cds-CAL35578.1;Parent=gene-Cj1471c;Dbxref=EnsemblGenomes-Gn:Cj1471c,EnsemblGenomes-Tr:CAL35578,GOA:Q0P8E6,InterPro:IPR001482,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P8E6,NCBI_GP:CAL35578.1;Name=CAL35578.1;Note=Original (2000) note: Cj1471c%2C probable type II protein secretion system E protein%2C len: 519 aa%3B similar to e.g. GSPE_ERWCA general secretion pathway protein E (498 aa)%2C fasta scores%3B opt: 993 z-score: 1102.0 E(): 0%2C38.2%25 identity in 487 aa overlap%2C and HOFB_ECOLI protein transport protein HOFB (461 aa)%2C fasta scores%3B opt: 925 z-score: 1027.3 E(): 0%2C 37.7%25 identity in 453 aa overlap. No Hp match. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00662 Bacterial type II secretion system protein E signature%2C and Pfam match to entry PF00437 GSPII_E%2C Bacterial type II secretion system protein%3B~Updated (2006) note: Some characterisation in Campylobacter jejuni. New gene name designated. Similar to more than one genus with acceptable similarty scores. Putative kept within product function. Functional classification - Protein and peptide secretion%3B~PMID:12949093%2C PMID:1971619;gbkey=CDS;gene=ctsE;inference=protein motif:Prosite:PS00662;locus_tag=Cj1471c;product=putative type II protein secretion system E protein;protein_id=CAL35578.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1405441	1406277	.	-	.	ID=id-Cj1471c;Note=HMMPfam hit to PF00437%2C Type II/IV secretion system protein%2C score 5.9e-102;gbkey=misc_feature;gene=ctsE;inference=protein motif:Pfam:PF00437;locus_tag=Cj1471c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1405618	1405662	.	-	.	ID=id-Cj1471c-2;Note=PS00662 Bacterial type II secretion system protein E signature;gbkey=misc_feature;gene=ctsE;inference=protein motif:Prosite:PS00662;locus_tag=Cj1471c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1405816	1405839	.	-	.	ID=id-Cj1471c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ctsE;inference=protein motif:Prosite:PS00017;locus_tag=Cj1471c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1406696	1407283	.	-	.	ID=gene-Cj1472c;Name=Cj1472c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1472c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1406696	1407283	.	-	0	ID=cds-CAL35579.1;Parent=gene-Cj1472c;Dbxref=EnsemblGenomes-Gn:Cj1472c,EnsemblGenomes-Tr:CAL35579,UniProtKB/TrEMBL:Q0P8E5,NCBI_GP:CAL35579.1;Name=CAL35579.1;Note=Original (2000) note: Cj1472c%2C probable membrane protein%2C len: 195 aa%3B no Hp match%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Literature search identified paper giving further clues to product function. Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:12949093;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1472c;product=putative membrane protein;protein_id=CAL35579.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1407158	1407226	.	-	.	ID=id-Cj1472c;Note=1 probable transmembrane helix predicted for Cj1472c by TMHMM2.0 at aa 20-42;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1472c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1407287	1407895	.	-	.	ID=gene-Cj1473c;Name=ctsP;gbkey=Gene;gene=ctsP;gene_biotype=protein_coding;locus_tag=Cj1473c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1407287	1407895	.	-	0	ID=cds-CAL35580.1;Parent=gene-Cj1473c;Dbxref=EnsemblGenomes-Gn:Cj1473c,EnsemblGenomes-Tr:CAL35580,InterPro:IPR003593,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P8E4,NCBI_GP:CAL35580.1;Name=CAL35580.1;Note=Original (2000) note: Cj1473c%2C probable ATP/GTP-binding protein%2C len: 202 aa%3B no Hp match. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Literature search identified paper giving further clues to product function. Functional classification - Unknown%3B~PMID:12949093;gbkey=CDS;gene=ctsP;inference=protein motif:Prosite:PS00017;locus_tag=Cj1473c;product=putative ATP/GTP-binding protein;protein_id=CAL35580.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1407785	1407808	.	-	.	ID=id-Cj1473c;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=ctsP;inference=protein motif:Prosite:PS00017;locus_tag=Cj1473c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1407888	1409306	.	-	.	ID=gene-Cj1474c;Name=ctsD;gbkey=Gene;gene=ctsD;gene_biotype=protein_coding;locus_tag=Cj1474c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1407888	1409306	.	-	0	ID=cds-CAL35581.1;Parent=gene-Cj1474c;Dbxref=EnsemblGenomes-Gn:Cj1474c,EnsemblGenomes-Tr:CAL35581,GOA:Q0P8E3,InterPro:IPR001775,InterPro:IPR004846,InterPro:IPR013358,UniProtKB/TrEMBL:Q0P8E3,NCBI_GP:CAL35581.1;Name=CAL35581.1;Note=Original (2000) note: Cj1474c%2C probable type II protein secretion system D protein%2C len: 472 aa%3B similar to e.g. GSPD_PSEAE general secretion pathway protein D precursor (658 aa)%2C fasta scores%3B opt: 305 z-score: 332.5 E(): 3.4e-11%2C 26.5%25 identity in 268 aa overlap. No Hp match. Contains Pfam match to entry PF00263 Bac_GSPproteins%2C Bacterial type II secretion system protein%2C and probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domains PF07655 Secretin N-terminal domain and PF07660 Secretin and TonB N terminus short domain were both identified within CDS. Literature search identified paper giving further clues to product function. Putative kept within product function. Functional classification - Protein and peptide secretion%3B~PMID:12949093;gbkey=CDS;gene=ctsD;inference=protein motif:Pfam:PF07660;locus_tag=Cj1474c;product=putative type II protein secretion system D protein;protein_id=CAL35581.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1407939	1408655	.	-	.	ID=id-Cj1474c;Note=HMMPfam hit to PF00263%2C Bacterial type II and III secretion syst%2C score 1e-73;gbkey=misc_feature;gene=ctsD;inference=protein motif:Pfam:PF00263;locus_tag=Cj1474c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1408764	1408991	.	-	.	ID=id-Cj1474c-2;Note=HMMPfam hit to PF07655%2C Secretin N-terminal domain%2Cscore 1.3e-38;gbkey=misc_feature;gene=ctsD;inference=protein motif:Pfam:PF07655;locus_tag=Cj1474c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1408995	1409159	.	-	.	ID=id-Cj1474c-3;Note=HMMPfam hit to PF07660%2C Secretin and TonB N terminus short domai%2C score 2.6e-08;gbkey=misc_feature;gene=ctsD;inference=protein motif:Pfam:PF07660;locus_tag=Cj1474c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1409278	1409595	.	-	.	ID=gene-Cj1475c;Name=ctsR;gbkey=Gene;gene=ctsR;gene_biotype=protein_coding;locus_tag=Cj1475c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1409278	1409595	.	-	0	ID=cds-CAL35582.1;Parent=gene-Cj1475c;Dbxref=EnsemblGenomes-Gn:Cj1475c,EnsemblGenomes-Tr:CAL35582,UniProtKB/TrEMBL:Q0P8E2,NCBI_GP:CAL35582.1;Name=CAL35582.1;Note=Original (2000) note: Cj1475c%2C unknown%2C len: 105 aa%3B no Hp match%3B~Updated (2006) note: Literature search identified paper giving further clues to product function. Functional classification - Unknown%3B~PMID:12949093;gbkey=CDS;gene=ctsR;locus_tag=Cj1475c;product=hypothetical protein Cj1475c;protein_id=CAL35582.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1409619	1413179	.	-	.	ID=gene-Cj1476c;Name=Cj1476c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1476c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1409619	1413179	.	-	0	ID=cds-CAL35583.1;Parent=gene-Cj1476c;Dbxref=EnsemblGenomes-Gn:Cj1476c,EnsemblGenomes-Tr:CAL35583,GOA:Q0P8E1,InterPro:IPR001450,InterPro:IPR002869,InterPro:IPR002880,InterPro:IPR009014,InterPro:IPR011766,InterPro:IPR011895,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR019456,InterPro:IPR019752,InterPro:IPR029061,UniProtKB/TrEMBL:Q0P8E1,NCBI_GP:CAL35583.1;Name=CAL35583.1;Note=Original (2000) note: Cj1476c%2C probable pyruvate-flavodoxin oxidoreductase%2C len: 1186 aa%3B highly similar to many e.g. NIFJ_ECOLI probable pyruvate-flavodoxin oxidoreductase (1174 aa)%2C fasta scores%3B opt: 3586 z-score: 3799.5 E(): 0%2C 47.2%25 identity in 1193 aa overlap. N-term has 28.6%25 identity to HP1110%2CC-term has 29.7%25 identity to HP1111. Contains 2x PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature%2Cand Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains%3B~Updated (2006) note: Pfam domains PF02775 Thiamine pyrophosphate enzyme%2C C-terminal%2C PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase and PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase were all identified within CDS. Further support given to product function. Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Electron transport;gbkey=CDS;inference=protein motif:Prosite:PS00198;locus_tag=Cj1476c;product=pyruvate-flavodoxin oxidoreductase;protein_id=CAL35583.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1409934	1410731	.	-	.	ID=id-Cj1476c;Note=HMMPfam hit to PF02775%2C Thiamine pyrophosphate enzyme%2C C-termina%2C score 5.1e-104;gbkey=misc_feature;inference=protein motif:Pfam:PF02775;locus_tag=Cj1476c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1410882	1410953	.	-	.	ID=id-Cj1476c-2;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.00046;gbkey=misc_feature;inference=protein motif:Pfam:PF00037;locus_tag=Cj1476c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1410897	1410932	.	-	.	ID=id-Cj1476c-3;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00198;locus_tag=Cj1476c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1411056	1411127	.	-	.	ID=id-Cj1476c-4;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 7.6e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF00037;locus_tag=Cj1476c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1411071	1411106	.	-	.	ID=id-Cj1476c-5;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00198;locus_tag=Cj1476c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1411353	1411907	.	-	.	ID=id-Cj1476c-6;Note=HMMPfam hit to PF01558%2C Pyruvate ferredoxin/flavodoxin oxidoredu%2C score 1.7e-68;gbkey=misc_feature;inference=protein motif:Pfam:PF01558;locus_tag=Cj1476c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1412436	1413134	.	-	.	ID=id-Cj1476c-7;Note=HMMPfam hit to PF01855%2C Pyruvate flavodoxin/ferredoxin oxidoredu%2C score 2.4e-108;gbkey=misc_feature;inference=protein motif:Pfam:PF01855;locus_tag=Cj1476c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1413272	1413913	.	-	.	ID=gene-Cj1477c;Name=Cj1477c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1477c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1413272	1413913	.	-	0	ID=cds-CAL35584.1;Parent=gene-Cj1477c;Dbxref=EnsemblGenomes-Gn:Cj1477c,EnsemblGenomes-Tr:CAL35584,GOA:Q0P8E0,InterPro:IPR023198,InterPro:IPR023214,UniProtKB/TrEMBL:Q0P8E0,NCBI_GP:CAL35584.1;Name=CAL35584.1;Note=Original (2000) note: Cj1477c%2C probable hydrolase%2Clen: 206 aa%3B similar to e.g. GPH_ECOLI phosphoglycolate phosphatase (252 aa)%2C fasta scores%3B opt: 209 z-score: 257.5 E(): 5.1e-07%2C 27.5%25 identity in 222 aa overlap. Contains Pfam match to entry PF00702 Hydrolase%2C haloacid dehalogenase-like hydrolase. Also similar to Cj1233 (27.3%25 identity in 205 aa overlap). No Hp match%3B~Updated (2006) note: Similar to different types of hydrolases. Putative kept within product function. Functional classification - Misc%3B~PMID:12576589;gbkey=CDS;inference=protein motif:Pfam:PF00702;locus_tag=Cj1477c;product=putative hydrolase;protein_id=CAL35584.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1413359	1413910	.	-	.	ID=id-Cj1477c;Note=HMMPfam hit to PF00702%2C haloacid dehalogenase-like hydrolase%2C score 2e-19;gbkey=misc_feature;inference=protein motif:Pfam:PF00702;locus_tag=Cj1477c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1413913	1414872	.	-	.	ID=gene-Cj1478c;Name=cadF;gbkey=Gene;gene=cadF;gene_biotype=protein_coding;locus_tag=Cj1478c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1413913	1414872	.	-	0	ID=cds-CAL35585.1;Parent=gene-Cj1478c;Dbxref=EnsemblGenomes-Gn:Cj1478c,EnsemblGenomes-Tr:CAL35585,GOA:Q0P8D9,InterPro:IPR006664,InterPro:IPR006665,InterPro:IPR006690,InterPro:IPR011250,InterPro:IPR027385,UniProtKB/TrEMBL:Q0P8D9,NCBI_GP:CAL35585.1;Name=CAL35585.1;Note=Original (2000) note: Cj1478c%2C cadF%2C outer membrane fibronectin-binding protein%2C len: 319 aa%3B 82.8%25 identical to TR:O06895 (EMBL:U87559) C. jejuni CADF precursor (fibronectin-binding protein) (326 aa)%2C and similar to many oprF proteins e.g. PORF_PSEFL outer membrane porin F precursor (root adhesin) (326 aa)%2C fasta scores%3B opt: 401 z-score: 458.6 E(): 3.2e-18%2C 29.1%25 identity in 316 aa overlap. No Hp match. Contains PS01068 OmpA-like domain%2Cand Pfam match to entry PF00691 OmpA%2C OmpA family%3B~Updated (2006) note: Characterised within Campylobacter jejuni%2C so putative not added to product function. Functional classification - Pathogenicity%3B~PMID:9220003%2C PMID:9435102%2C PMID:16091041;gbkey=CDS;gene=cadF;inference=protein motif:Prosite:PS01068;locus_tag=Cj1478c;product=outer membrane fibronectin-binding protein;protein_id=CAL35585.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1413943	1414230	.	-	.	ID=id-Cj1478c;Note=HMMPfam hit to PF00691%2C OmpA family%2C score 2.6e-37;gbkey=misc_feature;gene=cadF;inference=protein motif:Pfam:PF00691;locus_tag=Cj1478c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1413997	1414131	.	-	.	ID=id-Cj1478c-2;Note=PS01068 OmpA-like domain;gbkey=misc_feature;gene=cadF;inference=protein motif:Prosite:PS01068;locus_tag=Cj1478c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1414354	1414872	.	-	.	ID=id-Cj1478c-3;Note=HMMPfam hit to PF01389%2C OmpA-like transmembrane domain%2C score 0.00072;gbkey=misc_feature;gene=cadF;inference=protein motif:Pfam:PF01389;locus_tag=Cj1478c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1414997	1415386	.	-	.	ID=gene-Cj1479c;Name=rpsI;gbkey=Gene;gene=rpsI;gene_biotype=protein_coding;locus_tag=Cj1479c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1414997	1415386	.	-	0	ID=cds-CAL35586.1;Parent=gene-Cj1479c;Dbxref=EnsemblGenomes-Gn:Cj1479c,EnsemblGenomes-Tr:CAL35586,GOA:Q9PMI3,InterPro:IPR000754,InterPro:IPR014721,InterPro:IPR020568,InterPro:IPR020574,InterPro:IPR023035,NCBI_GP:CAL35586.1;Name=CAL35586.1;Note=Original (2000) note: Cj1479c%2C rpsI%2C 30S ribosomal protein S9%2C len: 129 aa%3B similar to many e.g. RS9_ECOLI 30S ribosomal protein S9 (129 aa)%2C fasta scores%3B opt: 400 z-score: 508.5 E(): 5.3e-21%2C 49.6%25 identity in 125 aa overlap. 77.5%25 identity to HP0083. Contains PS00360 Ribosomal protein S9 signature%2C and Pfam match to entry PF00380 S9%2C Ribosomal protein S9%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable similariy score. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:16272117;gbkey=CDS;gene=rpsI;inference=protein motif:Prosite:PS00360;locus_tag=Cj1479c;product=30S ribosomal protein S9;protein_id=CAL35586.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1415000	1415365	.	-	.	ID=id-Cj1479c;Note=HMMPfam hit to PF00380%2C Ribosomal protein S9/S16%2Cscore 2.5e-47;gbkey=misc_feature;gene=rpsI;inference=protein motif:Pfam:PF00380;locus_tag=Cj1479c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1415129	1415185	.	-	.	ID=id-Cj1479c-2;Note=PS00360 Ribosomal protein S9 signature;gbkey=misc_feature;gene=rpsI;inference=protein motif:Prosite:PS00360;locus_tag=Cj1479c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1415389	1415814	.	-	.	ID=gene-Cj1480c;Name=rplM;gbkey=Gene;gene=rplM;gene_biotype=protein_coding;locus_tag=Cj1480c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1415389	1415814	.	-	0	ID=cds-CAL35587.1;Parent=gene-Cj1480c;Dbxref=EnsemblGenomes-Gn:Cj1480c,EnsemblGenomes-Tr:CAL35587,GOA:Q0P8D7,InterPro:IPR005822,InterPro:IPR005823,InterPro:IPR023563,InterPro:IPR023564,UniProtKB/TrEMBL:Q0P8D7,NCBI_GP:CAL35587.1;Name=CAL35587.1;Note=Original (2000) note: Cj1480c%2C rplM%2C 50S ribosomal protein L13%2C len: 141 aa%3B similar to many e.g. RL13_ECOLI 50S ribosomal protein L13 (142 aa)%2C fasta scores%3B opt: 490 z-score: 616.2 E(): 5.3e-27%2C 53.1%25 identity in 130 aa overlap. 61.9%25 identity to HP0084. Contains PS00783 Ribosomal protein L13 signature%2C and Pfam match to entry PF00572 L13%2C Ribosomal protein L13%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable similariy score. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:16272117;gbkey=CDS;gene=rplM;inference=protein motif:Prosite:PS00783;locus_tag=Cj1480c;product=50S ribosomal protein L13;protein_id=CAL35587.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1415398	1415775	.	-	.	ID=id-Cj1480c;Note=HMMPfam hit to PF00572%2C Ribosomal protein L13%2Cscore 7.7e-54;gbkey=misc_feature;gene=rplM;inference=protein motif:Pfam:PF00572;locus_tag=Cj1480c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1415434	1415502	.	-	.	ID=id-Cj1480c-2;Note=PS00783 Ribosomal protein L13 signature;gbkey=misc_feature;gene=rplM;inference=protein motif:Prosite:PS00783;locus_tag=Cj1480c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1415898	1418663	.	-	.	ID=gene-Cj1481c;Name=Cj1481c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1481c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1415898	1418663	.	-	0	ID=cds-CAL35588.1;Parent=gene-Cj1481c;Dbxref=EnsemblGenomes-Gn:Cj1481c,EnsemblGenomes-Tr:CAL35588,GOA:Q0P8D6,InterPro:IPR000212,InterPro:IPR014016,InterPro:IPR014017,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P8D6,NCBI_GP:CAL35588.1;Name=CAL35588.1;Note=Original (2000) note: Cj1481c%2C possible helicase%2Clen: 921 aa%3B weak similarity to several predicted helicases e.g. UVRD_MYCGE putative DNA helicase II homolog (703 aa)%2C fasta scores%3B opt: 220 z-score: 237.1 E(): 7e-06%2C 24.5%25 identity in 715 aa overlap%2C and to e.g. ADDA_BACSU ATP-dependent nuclease subunit A (contains helicase activity) (1232 aa)%2C fasta scores%3B opt: 204 z-score: 216.2 E(): 0.0001%2C 23.0%25 identity in 868 aa overlap. 30.5%25 identity to HP1553. Also similar to predicted helicases Cj1101 (23.9%25 identity in 532 aa overlap)%2C and Cj0777 (24.1%25 identity in 673 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF00580 UvrD/REP helicase identified within CDS. Further support given to product function. Not yet specifically characterised within related bacteria with acceptable identity score. Thus%2C putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj1481c;product=putative helicase;protein_id=CAL35588.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1416843	1418660	.	-	.	ID=id-Cj1481c;Note=HMMPfam hit to PF00580%2C UvrD/REP helicase%2C score 3.9e-28;gbkey=misc_feature;inference=protein motif:Pfam:PF00580;locus_tag=Cj1481c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1418607	1418630	.	-	.	ID=id-Cj1481c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1481c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1418660	1421026	.	-	.	ID=gene-Cj1482c;Name=Cj1482c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1482c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1418660	1421026	.	-	0	ID=cds-CAL35589.1;Parent=gene-Cj1482c;Dbxref=EnsemblGenomes-Gn:Cj1482c,EnsemblGenomes-Tr:CAL35589,InterPro:IPR011335,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P8D5,NCBI_GP:CAL35589.1;Name=CAL35589.1;Note=Original (2000) note: Cj1482c%2C unknown%2C len: 788 aa%3B 29.5%25 identity to HP1089. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1482c;product=hypothetical protein Cj1482c;protein_id=CAL35589.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1421023	1421544	.	-	.	ID=gene-Cj1483c;Name=Cj1483c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1483c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1421023	1421544	.	-	0	ID=cds-CAL35590.1;Parent=gene-Cj1483c;Dbxref=EnsemblGenomes-Gn:Cj1483c,EnsemblGenomes-Tr:CAL35590,InterPro:IPR008620,UniProtKB/TrEMBL:Q0P8D4,NCBI_GP:CAL35590.1;Name=CAL35590.1;Note=Original (2000) note: Cj1483c%2C probable lipoprotein%2C len: 173 aa%3B 30.8%25 identity (in N-term) to HP0150. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1483c;product=putative lipoprotein;protein_id=CAL35590.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1421458	1421526	.	-	.	ID=id-Cj1483c;Note=1 probable transmembrane helix predicted for Cj1483c by TMHMM2.0 at aa 7-29;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1483c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1421473	1421505	.	-	.	ID=id-Cj1483c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1483c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1421531	1422133	.	-	.	ID=gene-Cj1484c;Name=Cj1484c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1484c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1421531	1422133	.	-	0	ID=cds-CAL35591.1;Parent=gene-Cj1484c;Dbxref=EnsemblGenomes-Gn:Cj1484c,EnsemblGenomes-Tr:CAL35591,UniProtKB/TrEMBL:Q0P8D3,NCBI_GP:CAL35591.1;Name=CAL35591.1;Note=Original (2000) note: Cj1484c%2C probable membrane protein%2C len: 200 aa%3B no Hp match. Contains probable N-terminal signal sequence and probable C-terminal transmembrane domain. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj1484c;product=putative membrane protein;protein_id=CAL35591.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1421570	1421629	.	-	.	ID=id-Cj1484c;Note=2 probable transmembrane helices predicted for Cj1484c by TMHMM2.0 at aa 9-31 and 169-188;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1484c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1422041	1422109	.	-	.	ID=id-Cj1484c;Note=2 probable transmembrane helices predicted for Cj1484c by TMHMM2.0 at aa 9-31 and 169-188;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1484c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	1422130	1422231	.	-	.	ID=gene-Cj1485c;Name=Cj1485c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1485c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1422130	1422231	.	-	0	ID=cds-CAL35592.1;Parent=gene-Cj1485c;Dbxref=EnsemblGenomes-Gn:Cj1485c,EnsemblGenomes-Tr:CAL35592,UniProtKB/TrEMBL:Q0P8D2,NCBI_GP:CAL35592.1;Name=CAL35592.1;Note=Original (2000) note: Cj1485c%2C probable periplasmic protein%2C len: 33 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1485c;product=putative periplasmic protein;protein_id=CAL35592.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1422154	1422213	.	-	.	ID=id-Cj1485c;Note=1 probable transmembrane helix predicted for Cj1485c by TMHMM2.0 at aa 7-26;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1485c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1422228	1422449	.	-	.	ID=gene-Cj1486c;Name=Cj1486c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1486c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1422228	1422449	.	-	0	ID=cds-CAL35593.1;Parent=gene-Cj1486c;Dbxref=EnsemblGenomes-Gn:Cj1486c,EnsemblGenomes-Tr:CAL35593,InterPro:IPR025065,UniProtKB/TrEMBL:Q0P8D1,NCBI_GP:CAL35593.1;Name=CAL35593.1;Note=Original (2000) note: Cj1486c%2C probable periplasmic protein%2C len: 73 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1486c;product=putative periplasmic protein;protein_id=CAL35593.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1422339	1422407	.	-	.	ID=id-Cj1486c;Note=1 probable transmembrane helix predicted for Cj1486c by TMHMM2.0 at aa 15-37;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1486c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1422446	1423309	.	-	.	ID=gene-Cj1487c;Name=ccoP;gbkey=Gene;gene=ccoP;gene_biotype=protein_coding;locus_tag=Cj1487c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1422446	1423309	.	-	0	ID=cds-CAL35594.1;Parent=gene-Cj1487c;Dbxref=EnsemblGenomes-Gn:Cj1487c,EnsemblGenomes-Tr:CAL35594,GOA:Q0P8D0,InterPro:IPR004678,InterPro:IPR009056,UniProtKB/TrEMBL:Q0P8D0,NCBI_GP:CAL35594.1;Name=CAL35594.1;Note=Original (2000) note: Cj1487c%2C ccoP%2C cb-type cytochrome C oxidase subunit III%2C len: 287 aa%3B simlar to TR:O87196 (EMBL:AB018105) H. pylori characterised cb-type cytochrome C oxidase subunit III (EC 1.9.3.1) (292 aa)%2Cfasta scores%3B opt: 952 z-score: 1043.8 E(): 0%2C 51.0%25 identity in 292 aa overlap (%3DHP0147%2C 51.2%25 identity). Contains 2x Pfam match to entry PF00034 cytochrome_c%2C and 2x PS00190 Cytochrome c family heme-binding site signature%3B~Updated (2006) note: Characterised in Helicobacter pylori with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:9880817;gbkey=CDS;gene=ccoP;inference=protein motif:Prosite:PS00190;locus_tag=Cj1487c;product=cb-type cytochrome C oxidase subunit III;protein_id=CAL35594.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1423055	1423123	.	-	.	ID=id-Cj1487c;Note=2 probable transmembrane helices predicted for Cj1487c by TMHMM2.0 at aa 10-30 and 63-85;gbkey=misc_feature;gene=ccoP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1487c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1423220	1423282	.	-	.	ID=id-Cj1487c;Note=2 probable transmembrane helices predicted for Cj1487c by TMHMM2.0 at aa 10-30 and 63-85;gbkey=misc_feature;gene=ccoP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1487c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1422458	1422679	.	-	.	ID=id-Cj1487c-2;Note=HMMPfam hit to PF00034%2C Cytochrome c%2C score 4.4e-07;gbkey=misc_feature;gene=ccoP;inference=protein motif:Pfam:PF00034;locus_tag=Cj1487c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1422635	1422652	.	-	.	ID=id-Cj1487c-3;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=ccoP;inference=protein motif:Prosite:PS00190;locus_tag=Cj1487c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1422716	1422955	.	-	.	ID=id-Cj1487c-4;Note=HMMPfam hit to PF00034%2C Cytochrome c%2C score 0.0077;gbkey=misc_feature;gene=ccoP;inference=protein motif:Pfam:PF00034;locus_tag=Cj1487c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1422908	1422925	.	-	.	ID=id-Cj1487c-5;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=ccoP;inference=protein motif:Prosite:PS00190;locus_tag=Cj1487c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1423309	1423572	.	-	.	ID=gene-Cj1488c;Name=ccoQ;gbkey=Gene;gene=ccoQ;gene_biotype=protein_coding;locus_tag=Cj1488c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1423309	1423572	.	-	0	ID=cds-CAL35595.1;Parent=gene-Cj1488c;Dbxref=EnsemblGenomes-Gn:Cj1488c,EnsemblGenomes-Tr:CAL35595,GOA:Q0P8C9,InterPro:IPR008621,InterPro:IPR014107,UniProtKB/TrEMBL:Q0P8C9,NCBI_GP:CAL35595.1;Name=CAL35595.1;Note=Original (2000) note: Cj1488c%2C ccoQ%2C cb-type cytochrome C oxidase subunit IV%2C len: 87 aa%3B similar to TR:O87195 (EMBL:AB018105) H. pylori characterised cb-type cytochrome C oxidase subunit IV (EC 1.9.3.1) (72 aa)%2Cfasta scores%3B opt: 143 z-score: 226.7 E(): 2.6e-05%2C 35.1%25 identity in 57 aa overlap (%3DHP0146)%3B~Updated (2006) note: Characterised in Helicobacter pylori with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:9880817;gbkey=CDS;gene=ccoQ;locus_tag=Cj1488c;product=cb-type cytochrome C oxidase subunit IV;protein_id=CAL35595.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1423420	1423488	.	-	.	ID=id-Cj1488c;Note=1 probable transmembrane helix predicted for Cj1488c by TMHMM2.0 at aa 29-51;gbkey=misc_feature;gene=ccoQ;inference=protein motif:TMHMM:2.0;locus_tag=Cj1488c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1423577	1424242	.	-	.	ID=gene-Cj1489c;Name=ccoO;gbkey=Gene;gene=ccoO;gene_biotype=protein_coding;locus_tag=Cj1489c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1423577	1424242	.	-	0	ID=cds-CAL35596.1;Parent=gene-Cj1489c;Dbxref=EnsemblGenomes-Gn:Cj1489c,EnsemblGenomes-Tr:CAL35596,GOA:Q0P8C8,InterPro:IPR000883,InterPro:IPR003468,InterPro:IPR009056,UniProtKB/TrEMBL:Q0P8C8,NCBI_GP:CAL35596.1;Name=CAL35596.1;Note=Original (2000) note: Cj1489c%2C ccoO%2C cb-type cytochrome C oxidase subunit II%2C len: 221 aa%3B similar to TR:O87194 (EMBL:AB018105) H. pylori characterised cb-type cytochrome C oxidase subunit II (EC 1.9.3.1) (232 aa)%2Cfasta scores%3B opt: 1010 z-score: 1158.4 E(): 0%2C 65.9%25 identity in 220 aa overlap (%3DHP0145%2C 66.8%25 identity). Contains PS00190 Cytochrome c family heme-binding site signature%3B~Updated (2006) note: PF02433 Cytochrome C oxidase%2Cmono-heme subunit/FixO subunit identified within CDS. Further support given to product function. Characterised in Helicobacter pylori with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:9880817;gbkey=CDS;gene=ccoO;inference=protein motif:Prosite:PS00190;locus_tag=Cj1489c;product=cb-type cytochrome C oxidase subunit II;protein_id=CAL35596.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1423580	1424239	.	-	.	ID=id-Cj1489c;Note=HMMPfam hit to PF02433%2C Cytochrome C oxidase%2Cmono-heme subunit/FixO%2C score 2.2e-99;gbkey=misc_feature;gene=ccoO;inference=protein motif:Pfam:PF02433;locus_tag=Cj1489c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1424045	1424062	.	-	.	ID=id-Cj1489c-2;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;gene=ccoO;inference=protein motif:Prosite:PS00190;locus_tag=Cj1489c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1424147	1424215	.	-	.	ID=id-Cj1489c-3;Note=1 probable transmembrane helix predicted for Cj1489c by TMHMM2.0 at aa 10-32;gbkey=misc_feature;gene=ccoO;inference=protein motif:TMHMM:2.0;locus_tag=Cj1489c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1424255	1425721	.	-	.	ID=gene-Cj1490c;Name=ccoN;gbkey=Gene;gene=ccoN;gene_biotype=protein_coding;locus_tag=Cj1490c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1424255	1425721	.	-	0	ID=cds-CAL35597.1;Parent=gene-Cj1490c;Dbxref=EnsemblGenomes-Gn:Cj1490c,EnsemblGenomes-Tr:CAL35597,GOA:Q0P8C7,InterPro:IPR000883,InterPro:IPR004677,InterPro:IPR023615,InterPro:IPR023616,UniProtKB/TrEMBL:Q0P8C7,NCBI_GP:CAL35597.1;Name=CAL35597.1;Note=Original (2000) note: Cj1490c%2C ccoN%2C cb-type cytochrome C oxidase subunit I%2C len: 488 aa%3B similar to TR:O87193 (EMBL:AB018105) H. pylori characterised cb-type cytochrome C oxidase subunit I (EC 1.9.3.1) (488 aa)%2Cfasta scores%3B opt: 2471 z-score: 2791.9 E(): 0%2C 68.0%25 identity in 487 aa overlap (%3DHP0144%2C 68.8%25 identity). Contains PS00077 Heme-copper oxidase catalytic subunit%2Ccopper B binding region signature%2C and Pfam match to entry PF00115 COX1%2C Cytochrome C and Quinol oxidase polypeptide I%3B~Updated (2006) note: Also%2C twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised in Helicobacter pylori with acceptable identity score. Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:9880817;gbkey=CDS;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;product=cb-type cytochrome C oxidase subunit I;protein_id=CAL35597.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1424342	1424410	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1424468	1424536	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1424594	1424662	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1424705	1424773	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1424807	1424875	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1424903	1424971	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1425008	1425076	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1425176	1425235	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1425254	1425322	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1425350	1425418	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1425476	1425544	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1425617	1425685	.	-	.	ID=id-Cj1490c;Note=12 probable transmembrane helices predicted for Cj1490c by TMHMM2.0 at aa 13-35%2C 60-82%2C 102-124%2C 134-156%2C163-182%2C 216-238%2C 251-273%2C 283-305%2C 317-339%2C 354-376%2C396-418 and 438-460;gbkey=misc_feature;gene=ccoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1490c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1424393	1425721	.	-	.	ID=id-Cj1490c-2;Note=HMMPfam hit to PF00115%2C Cytochrome C and Quinol oxidase polypeptide%2C score 3.1e-12;gbkey=misc_feature;gene=ccoN;inference=protein motif:Pfam:PF00115;locus_tag=Cj1490c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1424912	1425079	.	-	.	ID=id-Cj1490c-3;Note=PS00077 Heme-copper oxidase catalytic subunit%2Ccopper B binding region signature;gbkey=misc_feature;gene=ccoN;inference=protein motif:Prosite:PS00077;locus_tag=Cj1490c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1425847	1426527	.	-	.	ID=gene-Cj1491c;Name=Cj1491c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1491c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1425847	1426527	.	-	0	ID=cds-CAL35598.1;Parent=gene-Cj1491c;Dbxref=EnsemblGenomes-Gn:Cj1491c,EnsemblGenomes-Tr:CAL35598,GOA:Q0P8C6,InterPro:IPR001789,InterPro:IPR001867,InterPro:IPR011006,InterPro:IPR011991,UniProtKB/TrEMBL:Q0P8C6,NCBI_GP:CAL35598.1;Name=CAL35598.1;Note=Original (2000) note: Cj1491c%2C probable two-component regulator%2C len: 226 aa%3B similar to many e.g. VANR_ENTFA regulatory protein VANRB (220 aa)%2C fasta scores%3B opt: 322 z-score: 369.3 E(): 3e-13%2C 29.9%25 identity in 214 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00072 response_reg%2C Response regulator receiver domain%3B~Updated (2006) note: Pfam domain PF00486 Transcriptional regulatory protein%2C C terminal identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet%2C so putative kept within product function. Functional classification - Signal transduction;gbkey=CDS;inference=protein motif:Pfam:PF00486;locus_tag=Cj1491c;product=putative two-component regulator;protein_id=CAL35598.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1425862	1426074	.	-	.	ID=id-Cj1491c;Note=HMMPfam hit to PF00486%2C Transcriptional regulatory protein%2C C te%2C score 3.9e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF00486;locus_tag=Cj1491c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1426147	1426506	.	-	.	ID=id-Cj1491c-2;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 4.4e-32;gbkey=misc_feature;inference=protein motif:Pfam:PF00072;locus_tag=Cj1491c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1426530	1427741	.	-	.	ID=gene-Cj1492c;Name=Cj1492c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1492c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1426530	1427741	.	-	0	ID=cds-CAL35599.1;Parent=gene-Cj1492c;Dbxref=EnsemblGenomes-Gn:Cj1492c,EnsemblGenomes-Tr:CAL35599,GOA:Q0P8C5,InterPro:IPR000014,InterPro:IPR000700,InterPro:IPR001610,InterPro:IPR003594,InterPro:IPR004358,InterPro:IPR005467,UniProtKB/TrEMBL:Q0P8C5,NCBI_GP:CAL35599.1;Name=CAL35599.1;Note=Original (2000) note: Cj1492c%2C probable two-component sensor%2C len: 403 aa%3B similar to many e.g. KINC_BACSU sporulation kinase C (428 aa)%2C fasta scores%3B opt: 281 z-score: 301.1 E(): 1.9e-09%2C 29.3%25 identity in 242 aa overlap. No Hp ortholog. Contains Pfam match to entry PF00512 signal%2C Signal carboxyl-terminal domain%3B~Updated (2006) note: No specific characterisation with acceptable identity score has been carried out yet%2Cso putative kept within product function. Functional classification - Signal transduction;gbkey=CDS;inference=protein motif:Pfam:PF00512;locus_tag=Cj1492c;product=putative two-component sensor;protein_id=CAL35599.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1426545	1426874	.	-	.	ID=id-Cj1492c;Note=HMMPfam hit to PF02518%2C Histidine kinase-%2C DNA gyrase B-%2C and HSP90%2C score 1.3e-26;gbkey=misc_feature;inference=protein motif:Pfam:PF02518;locus_tag=Cj1492c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1427738	1428397	.	-	.	ID=gene-Cj1493c;Name=Cj1493c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1493c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1427738	1428397	.	-	0	ID=cds-CAL35600.1;Parent=gene-Cj1493c;Dbxref=EnsemblGenomes-Gn:Cj1493c,EnsemblGenomes-Tr:CAL35600,GOA:Q0P8C4,InterPro:IPR003834,UniProtKB/TrEMBL:Q0P8C4,NCBI_GP:CAL35600.1;Name=CAL35600.1;Note=Original (2000) note: Cj1493c%2C probable integral membrane protein%2C len: 219 aa%3B 33.9%25 identity to HP0861%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1493c;product=putative integral membrane protein;protein_id=CAL35600.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1427744	1427812	.	-	.	ID=id-Cj1493c;Note=6 probable transmembrane helices predicted for Cj1493c by TMHMM2.0 at aa 13-35%2C 50-72%2C 79-101%2C 130-152%2C159-181 and 196-218;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1493c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1427855	1427923	.	-	.	ID=id-Cj1493c;Note=6 probable transmembrane helices predicted for Cj1493c by TMHMM2.0 at aa 13-35%2C 50-72%2C 79-101%2C 130-152%2C159-181 and 196-218;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1493c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1427942	1428010	.	-	.	ID=id-Cj1493c;Note=6 probable transmembrane helices predicted for Cj1493c by TMHMM2.0 at aa 13-35%2C 50-72%2C 79-101%2C 130-152%2C159-181 and 196-218;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1493c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1428095	1428163	.	-	.	ID=id-Cj1493c;Note=6 probable transmembrane helices predicted for Cj1493c by TMHMM2.0 at aa 13-35%2C 50-72%2C 79-101%2C 130-152%2C159-181 and 196-218;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1493c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1428182	1428250	.	-	.	ID=id-Cj1493c;Note=6 probable transmembrane helices predicted for Cj1493c by TMHMM2.0 at aa 13-35%2C 50-72%2C 79-101%2C 130-152%2C159-181 and 196-218;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1493c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1428293	1428361	.	-	.	ID=id-Cj1493c;Note=6 probable transmembrane helices predicted for Cj1493c by TMHMM2.0 at aa 13-35%2C 50-72%2C 79-101%2C 130-152%2C159-181 and 196-218;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1493c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	gene	1428394	1429512	.	-	.	ID=gene-Cj1494c;Name=carA;gbkey=Gene;gene=carA;gene_biotype=protein_coding;locus_tag=Cj1494c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1428394	1429512	.	-	0	ID=cds-CAL35601.1;Parent=gene-Cj1494c;Dbxref=EnsemblGenomes-Gn:Cj1494c,EnsemblGenomes-Tr:CAL35601,GOA:Q9PMG8,InterPro:IPR002474,InterPro:IPR006274,InterPro:IPR017926,InterPro:IPR029062,NCBI_GP:CAL35601.1;Name=CAL35601.1;Note=Original (2000) note: Cj1494c%2C carA%2C proabable carbamoyl-phosphate synthase small chain%2C len: 371 aa%3B similar to many e.g. CARA_ECOLI carbamoyl-phosphate synthase small chain (EC 6.3.5.5) (382 aa)%2C fasta scores%3B opt: 946 z-score: 1094.4 E(): 0%2C 40.3%25 identity in 377 aa overlap. 57.8%25 identity to HP1237. Contains PS00442 Glutamine amidotransferases class-I active site%2C Pfam match to entry PF00117 GATase%2C Glutamine amidotransferases class-I%2C and Pfam match to entry PF00988 CPSase_sm_chain%2CCarbamoyl-phosphate synthase small chain%2C CPSase domain%3B~Updated (2006) note: Characterised wihtin Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification -Pyrimidine ribonucleotide biosynthesis%3B~PMID:10428826;gbkey=CDS;gene=carA;inference=protein motif:Prosite:PS00442;locus_tag=Cj1494c;product=carbamoyl-phosphate synthase small chain;protein_id=CAL35601.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1428400	1428945	.	-	.	ID=id-Cj1494c;Note=HMMPfam hit to PF00117%2C Glutamine amidotransferase class-I%2C score 1.5e-57;gbkey=misc_feature;gene=carA;inference=protein motif:Pfam:PF00117;locus_tag=Cj1494c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1428691	1428726	.	-	.	ID=id-Cj1494c-2;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=carA;inference=protein motif:Prosite:PS00442;locus_tag=Cj1494c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1429075	1429509	.	-	.	ID=id-Cj1494c-3;Note=HMMPfam hit to PF00988%2C Carbamoyl-phosphate synthase small ch%2C score 5.6e-55;gbkey=misc_feature;gene=carA;inference=protein motif:Pfam:PF00988;locus_tag=Cj1494c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1429512	1430063	.	-	.	ID=gene-Cj1495c;Name=Cj1495c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1495c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1429512	1430063	.	-	0	ID=cds-CAL35602.1;Parent=gene-Cj1495c;Dbxref=EnsemblGenomes-Gn:Cj1495c,EnsemblGenomes-Tr:CAL35602,InterPro:IPR007463,UniProtKB/TrEMBL:Q0P8C2,NCBI_GP:CAL35602.1;Name=CAL35602.1;Note=Original (2000) note: Cj1495c%2C unknown%2C len: 183 aa%3B similar to hypothetical proteins e.g. TR:O67633 (EMBL:AE000754) Aquifex aeolicus AQ_1752 (183 aa)%2C fasta scores%3B opt: 268 z-score: 310.8 E(): 5.4e-10%2C 24.6%25 identity in 183 aa overlap. 45.4%25 identity to HP1236%3B~Updated (2006) note: Pfam domain PF04368 Protein of unknown function (DUF507) identified within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF04368;locus_tag=Cj1495c;product=conserved hypothetical protein Cj1495c;protein_id=CAL35602.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1429515	1430063	.	-	.	ID=id-Cj1495c;Note=HMMPfam hit to PF04368%2C Protein of unknown function (DUF507)%2C score 1.5e-129;gbkey=misc_feature;inference=protein motif:Pfam:PF04368;locus_tag=Cj1495c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1430156	1430674	.	-	.	ID=gene-Cj1496c;Name=Cj1496c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1496c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1430156	1430674	.	-	0	ID=cds-CAL35603.1;Parent=gene-Cj1496c;Dbxref=EnsemblGenomes-Gn:Cj1496c,EnsemblGenomes-Tr:CAL35603,InterPro:IPR006668,UniProtKB/TrEMBL:Q0P8C1,NCBI_GP:CAL35603.1;Name=CAL35603.1;Note=Original (2000) note: Cj1496c%2C probable periplasmic protein%2C len: 172 aa%3B similar to TR:O30719 (EMBL:AF016039) H. pylori PDP protein (HP0257) (223 aa)%2C fasta scores%3B opt: 232 z-score: 243.0 E(): 3.3e-06%2C 33.3%25 identity in 177 aa overlap. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Paper identified linking protein to glycoprotein. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:12186869;gbkey=CDS;locus_tag=Cj1496c;product=putative periplasmic protein;protein_id=CAL35603.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1430667	1431095	.	-	.	ID=gene-Cj1497c;Name=Cj1497c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1497c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1430667	1431095	.	-	0	ID=cds-CAL35604.1;Parent=gene-Cj1497c;Dbxref=EnsemblGenomes-Gn:Cj1497c,EnsemblGenomes-Tr:CAL35604,UniProtKB/TrEMBL:Q0P8C0,NCBI_GP:CAL35604.1;Name=CAL35604.1;Note=Original (2000) note: Cj1497c%2C unknown%2C len: 142 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj1497c;product=hypothetical protein Cj1497c;protein_id=CAL35604.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1431092	1432342	.	-	.	ID=gene-Cj1498c;Name=purA;gbkey=Gene;gene=purA;gene_biotype=protein_coding;locus_tag=Cj1498c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1431092	1432342	.	-	0	ID=cds-CAL35605.1;Parent=gene-Cj1498c;Dbxref=EnsemblGenomes-Gn:Cj1498c,EnsemblGenomes-Tr:CAL35605,GOA:Q9PMG4,InterPro:IPR001114,InterPro:IPR018220,InterPro:IPR027417,PDB:3R7T,NCBI_GP:CAL35605.1;Name=CAL35605.1;Note=Original (2000) note: Cj1498c%2C purA%2C probable adenylosuccinate synthetase%2C len: 416 aa%3B similar to many e.g. PURA_ECOLI adenylosuccinate synthetase (EC 6.3.4.4) (431 aa)%2C fasta scores%3B opt: 1268 z-score: 1440.1 E(): 0%2C47.0%25 identity in 421 aa overlap. 51.6%25 identity to HP0255. Contains PS01266 Adenylosuccinate synthetase GTP-binding site%2C PS00513 Adenylosuccinate synthetase active site%2C and Pfam match to entry PF00709 Adenylsucc_synt%2C Adenylosuccinate synthetase%3B~Updated (2006) note: Characterised wihtin Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Purine ribonucleotide biosynthesis%3B~PMID:3058695%2C PMID:10364182;gbkey=CDS;gene=purA;inference=protein motif:Prosite:PS01266;locus_tag=Cj1498c;product=adenylosuccinate synthetase;protein_id=CAL35605.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1431098	1432333	.	-	.	ID=id-Cj1498c;Note=HMMPfam hit to PF00709%2C Adenylosuccinate synthetase%2C score 1.6e-193;gbkey=misc_feature;gene=purA;inference=protein motif:Pfam:PF00709;locus_tag=Cj1498c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1431923	1431958	.	-	.	ID=id-Cj1498c-2;Note=PS00513 Adenylosuccinate synthetase active site;gbkey=misc_feature;gene=purA;inference=protein motif:Prosite:PS00513;locus_tag=Cj1498c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1432289	1432312	.	-	.	ID=id-Cj1498c-3;Note=PS01266 Adenylosuccinate synthetase GTP-binding site;gbkey=misc_feature;gene=purA;inference=protein motif:Prosite:PS01266;locus_tag=Cj1498c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1432370	1432467	.	-	.	ID=gene-tRNA-SeC;Name=tRNA-SeC;gbkey=Gene;gene=tRNA-SeC;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1432370	1432467	.	-	.	ID=rna-tRNA-SeC;Parent=gene-tRNA-SeC;Note=tRNA SeC anticodon TCA%2C Cove score 35.94;gbkey=tRNA;gene=tRNA-SeC;product=tRNA-Sec
gi|15791399|ref|NC_002163.1|	EMBL	exon	1432370	1432467	.	-	.	ID=exon-tRNA-SeC-1;Parent=rna-tRNA-SeC;Note=tRNA SeC anticodon TCA%2C Cove score 35.94;gbkey=tRNA;gene=tRNA-SeC;product=tRNA-Sec
gi|15791399|ref|NC_002163.1|	EMBL	gene	1432607	1433815	.	+	.	ID=gene-Cj1500;Name=Cj1500;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1500
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1432607	1433815	.	+	0	ID=cds-CAL35606.1;Parent=gene-Cj1500;Dbxref=EnsemblGenomes-Gn:Cj1500,EnsemblGenomes-Tr:CAL35606,InterPro:IPR007272,UniProtKB/TrEMBL:Q0P8B8,NCBI_GP:CAL35606.1;Name=CAL35606.1;Note=Original (2000) note: Cj1500%2C probable integral membrane protein%2C len: 402 aa%3B similar to hypothetical membrane protens e.g. YEDE_ECOLI (401 aa)%2C fasta scores%3B opt: 722 z-score: 819.1 E(): 0%2C 44.3%25 identity in 395 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain x2 PF04143 YeeE/YedE family (DUF395) identified within CDS. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1500;product=putative integral membrane protein;protein_id=CAL35606.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1432661	1432729	.	+	.	ID=id-Cj1500;Note=10 probable transmembrane helices predicted for Cj1500 by TMHMM2.0 at aa 19-41%2C 80-97%2C 110-129%2C 139-161%2C194-216%2C 226-244%2C 265-287%2C 297-319%2C 331-353 and 368-390;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1500;part=1/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1432844	1432897	.	+	.	ID=id-Cj1500;Note=10 probable transmembrane helices predicted for Cj1500 by TMHMM2.0 at aa 19-41%2C 80-97%2C 110-129%2C 139-161%2C194-216%2C 226-244%2C 265-287%2C 297-319%2C 331-353 and 368-390;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1500;part=2/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1432934	1432993	.	+	.	ID=id-Cj1500;Note=10 probable transmembrane helices predicted for Cj1500 by TMHMM2.0 at aa 19-41%2C 80-97%2C 110-129%2C 139-161%2C194-216%2C 226-244%2C 265-287%2C 297-319%2C 331-353 and 368-390;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1500;part=3/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1433021	1433089	.	+	.	ID=id-Cj1500;Note=10 probable transmembrane helices predicted for Cj1500 by TMHMM2.0 at aa 19-41%2C 80-97%2C 110-129%2C 139-161%2C194-216%2C 226-244%2C 265-287%2C 297-319%2C 331-353 and 368-390;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1500;part=4/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1433186	1433254	.	+	.	ID=id-Cj1500;Note=10 probable transmembrane helices predicted for Cj1500 by TMHMM2.0 at aa 19-41%2C 80-97%2C 110-129%2C 139-161%2C194-216%2C 226-244%2C 265-287%2C 297-319%2C 331-353 and 368-390;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1500;part=5/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1433282	1433338	.	+	.	ID=id-Cj1500;Note=10 probable transmembrane helices predicted for Cj1500 by TMHMM2.0 at aa 19-41%2C 80-97%2C 110-129%2C 139-161%2C194-216%2C 226-244%2C 265-287%2C 297-319%2C 331-353 and 368-390;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1500;part=6/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1433399	1433467	.	+	.	ID=id-Cj1500;Note=10 probable transmembrane helices predicted for Cj1500 by TMHMM2.0 at aa 19-41%2C 80-97%2C 110-129%2C 139-161%2C194-216%2C 226-244%2C 265-287%2C 297-319%2C 331-353 and 368-390;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1500;part=7/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1433495	1433563	.	+	.	ID=id-Cj1500;Note=10 probable transmembrane helices predicted for Cj1500 by TMHMM2.0 at aa 19-41%2C 80-97%2C 110-129%2C 139-161%2C194-216%2C 226-244%2C 265-287%2C 297-319%2C 331-353 and 368-390;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1500;part=8/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1433597	1433665	.	+	.	ID=id-Cj1500;Note=10 probable transmembrane helices predicted for Cj1500 by TMHMM2.0 at aa 19-41%2C 80-97%2C 110-129%2C 139-161%2C194-216%2C 226-244%2C 265-287%2C 297-319%2C 331-353 and 368-390;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1500;part=9/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1433708	1433776	.	+	.	ID=id-Cj1500;Note=10 probable transmembrane helices predicted for Cj1500 by TMHMM2.0 at aa 19-41%2C 80-97%2C 110-129%2C 139-161%2C194-216%2C 226-244%2C 265-287%2C 297-319%2C 331-353 and 368-390;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1500;part=10/10;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1432841	1432873	.	+	.	ID=id-Cj1500-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1500
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1432916	1433110	.	+	.	ID=id-Cj1500-3;Note=HMMPfam hit to PF04143%2C YeeE/YedE family (DUF395)%2Cscore 1.3e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF04143;locus_tag=Cj1500
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1433474	1433665	.	+	.	ID=id-Cj1500-4;Note=HMMPfam hit to PF04143%2C YeeE/YedE family (DUF395)%2Cscore 6.5e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF04143;locus_tag=Cj1500
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1433522	1433554	.	+	.	ID=id-Cj1500-5;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1500
gi|15791399|ref|NC_002163.1|	EMBL	gene	1433819	1434046	.	+	.	ID=gene-Cj1501;Name=Cj1501;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1501
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1433819	1434046	.	+	0	ID=cds-CAL35607.1;Parent=gene-Cj1501;Dbxref=EnsemblGenomes-Gn:Cj1501,EnsemblGenomes-Tr:CAL35607,InterPro:IPR001455,UniProtKB/TrEMBL:Q0P8B7,NCBI_GP:CAL35607.1;Name=CAL35607.1;Note=Updated (2006) note: Conserved added to product function due to present motif within CDS%3B~Original (2000) note: Cj1501%2C unknown%2C len: 85 aa%3B similar to hypothetical proteins e.g. YEDF_ECOLI (77 aa)%2Cfasta scores%3B opt: 341 z-score: 453.8 E(): 5.9e-18%2C 65.7%25 identity in 70 aa overlap. No Hp match. Contains PS01148 Uncharacterized protein family UPF0033 signature%2C and Pfam match to entry PF01206 UPF0033%2C Uncharacterized protein family UPF0033;gbkey=CDS;inference=protein motif:Prosite:PS01148;locus_tag=Cj1501;product=conserved hypothetical protein Cj1501;protein_id=CAL35607.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1433825	1434040	.	+	.	ID=id-Cj1501;Note=HMMPfam hit to PF01206%2C SirA-like protein%2C score 1.6e-27;gbkey=misc_feature;inference=protein motif:Pfam:PF01206;locus_tag=Cj1501
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1433837	1433875	.	+	.	ID=id-Cj1501-2;Note=PS01148 Uncharacterized protein family UPF0033 signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01148;locus_tag=Cj1501
gi|15791399|ref|NC_002163.1|	EMBL	gene	1434062	1435549	.	-	.	ID=gene-Cj1502c;Name=putP;gbkey=Gene;gene=putP;gene_biotype=protein_coding;locus_tag=Cj1502c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1434062	1435549	.	-	0	ID=cds-CAL35608.1;Parent=gene-Cj1502c;Dbxref=EnsemblGenomes-Gn:Cj1502c,EnsemblGenomes-Tr:CAL35608,GOA:Q0P8B6,InterPro:IPR001734,InterPro:IPR011851,InterPro:IPR018212,InterPro:IPR019900,UniProtKB/TrEMBL:Q0P8B6,NCBI_GP:CAL35608.1;Name=CAL35608.1;Note=Original (2000) note: Cj1502c%2C putP%2C probable sodium/proline symporter%2C len: 495 aa%3B similar to many e.g. PUTP_ECOLI sodium/proline symporter (proline permease) (502 aa)%2C fatsa scores%3B opt: 1695 z-score: 1986.4 E(): 0%2C 51.7%25 identity in 487 aa overlap. 74.9%25 identity to HP0055. Contains Pfam match to entry PF00474 SSF%2C Sodium:solute symporter family%3B~Updated (2006) note: Twelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Characterised within Escherichia coli with acceptable identity scores. Putative kept within product function. Functional classification -Transport/binding proteins - Amino acids and amines%3B~PMID:1567896%2C PMID:3302614;gbkey=CDS;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;product=putative sodium/proline symporter;protein_id=CAL35608.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1434110	1434178	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1434191	1434250	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1434269	1434337	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1434365	1434433	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1434494	1434562	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1434644	1434712	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1434773	1434841	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1434884	1434952	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1434989	1435057	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1435085	1435153	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1435244	1435312	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1435445	1435513	.	-	.	ID=id-Cj1502c;Note=12 probable transmembrane helices predicted for Cj1502c by TMHMM2.0 at aa 13-35%2C 80-102%2C 133-155%2C 165-187%2C200-222%2C 237-259%2C 280-302%2C 330-352%2C 373-395%2C 405-427%2C434-453 and 458-480;gbkey=misc_feature;gene=putP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1502c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1434224	1435420	.	-	.	ID=id-Cj1502c-2;Note=HMMPfam hit to PF00474%2C Sodium:solute symporter family%2C score 2e-120;gbkey=misc_feature;gene=putP;inference=protein motif:Pfam:PF00474;locus_tag=Cj1502c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1434665	1434697	.	-	.	ID=id-Cj1502c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=putP;inference=protein motif:Prosite:PS00013;locus_tag=Cj1502c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1435549	1439037	.	-	.	ID=gene-Cj1503c;Name=putA;gbkey=Gene;gene=putA;gene_biotype=protein_coding;locus_tag=Cj1503c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1435549	1439037	.	-	0	ID=cds-CAL35609.1;Parent=gene-Cj1503c;Dbxref=EnsemblGenomes-Gn:Cj1503c,EnsemblGenomes-Tr:CAL35609,GOA:Q0P8B5,InterPro:IPR002872,InterPro:IPR015590,InterPro:IPR016160,InterPro:IPR016161,InterPro:IPR016162,InterPro:IPR016163,InterPro:IPR025703,InterPro:IPR029041,InterPro:IPR029510,UniProtKB/TrEMBL:Q0P8B5,NCBI_GP:CAL35609.1;Name=CAL35609.1;Note=Original (2000) note: Cj1503c%2C putA%2C possible proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase%2C len: 1162 aa%3B similar to e.g. PUTA_ECOLI bifunctional PUTA protein [includes: proline dehydrogenase (EC 1.5.99.8)%3B delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) (1320 aa)%2C fasta scores%3B opt: 611 z-score: 639.8 E(): 2.6e-28%2C 26.9%25 identity in 892 aa overlap. 65.0%25 identity to HP0056. Contains Pfam match to entry PF00171 aldedh%2C Aldehyde dehydrogenase%2C PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00687 Aldehyde dehydrogenases glutamic acid active site%2C and PS00070 Aldehyde dehydrogenases cysteine active site%3B~Updated (2006) note: Pfam domain PF01619 Proline dehydrogenase also identified within CDS. Further support given to product function. Characterised within Escherichia coli%2C however%2C identity score was not acceptable. Putative kept within product function. Functional classification - Degradation - Amino acids%3B~PMID:15449943%2C PMID:7966312%2C PMID:12009917;gbkey=CDS;gene=putA;inference=protein motif:Prosite:PS00687;locus_tag=Cj1503c;product=putative proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase;protein_id=CAL35609.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1436146	1437504	.	-	.	ID=id-Cj1503c;Note=HMMPfam hit to PF00171%2C Aldehyde dehydrogenase family%2C score 1.3e-29;gbkey=misc_feature;gene=putA;inference=protein motif:Pfam:PF00171;locus_tag=Cj1503c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1436722	1436757	.	-	.	ID=id-Cj1503c-2;Note=PS00070 Aldehyde dehydrogenases cysteine active site;gbkey=misc_feature;gene=putA;inference=protein motif:Prosite:PS00070;locus_tag=Cj1503c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1436818	1436841	.	-	.	ID=id-Cj1503c-3;Note=PS00687 Aldehyde dehydrogenases glutamic acid active site;gbkey=misc_feature;gene=putA;inference=protein motif:Prosite:PS00687;locus_tag=Cj1503c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1437265	1437288	.	-	.	ID=id-Cj1503c-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=putA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1503c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1437769	1438788	.	-	.	ID=id-Cj1503c-5;Note=HMMPfam hit to PF01619%2C Proline dehydrogenase%2Cscore 5.2e-98;gbkey=misc_feature;gene=putA;inference=protein motif:Pfam:PF01619;locus_tag=Cj1503c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1439168	1440094	.	-	.	ID=gene-Cj1504c;Name=selD;gbkey=Gene;gene=selD;gene_biotype=protein_coding;locus_tag=Cj1504c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1439168	1440094	.	-	0	ID=cds-CAL35610.1;Parent=gene-Cj1504c;Dbxref=EnsemblGenomes-Gn:Cj1504c,EnsemblGenomes-Tr:CAL35610,GOA:Q9PMF9,InterPro:IPR000728,InterPro:IPR004536,InterPro:IPR010918,InterPro:IPR016188,InterPro:IPR023061,NCBI_GP:CAL35610.1;Name=CAL35610.1;Note=Original (2000) note: Cj1504c%2C selD%2C probable selenide%2Cwater dikinase%2C len: 308 aa%3B similar to e.g. SELD_ECOLI selenide%2Cwater dikinase (selenophosphate synthetase) (EC 2.7.9.3) (347 aa)%2C fasta scores%3B opt: 638 z-score: 720.3 E(): 8.4e-33%2C 37.2%25 identity in 298 aa overlap. No Hp match. Contains Pfam match to entry PF00586 AIRS%2C AIR synthase related proteins%3B~Updated (2006) note: Characterised wihtin Escherichia coli with acceptable identity score. Putative kept within product function. Functional classification -Aminoacyl tRNA synthetases and their modification%3B~PMID:2405383%2C PMID:1527085;gbkey=CDS;gene=selD;inference=protein motif:Pfam:PF00586;locus_tag=Cj1504c;product=putative selenide%2Cwater dikinase;protein_id=CAL35610.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1439171	1439695	.	-	.	ID=id-Cj1504c;Note=HMMPfam hit to PF02769%2C AIR synthase related protein%2C C-terminal dom%2C score 2.9e-21;gbkey=misc_feature;gene=selD;inference=protein motif:Pfam:PF02769;locus_tag=Cj1504c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1440200	1440772	.	-	.	ID=gene-Cj1505c;Name=Cj1505c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1505c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1440200	1440772	.	-	0	ID=cds-CAL35611.1;Parent=gene-Cj1505c;Dbxref=EnsemblGenomes-Gn:Cj1505c,EnsemblGenomes-Tr:CAL35611,InterPro:IPR001455,InterPro:IPR019870,InterPro:IPR027396,UniProtKB/TrEMBL:Q0P8B3,NCBI_GP:CAL35611.1;Name=CAL35611.1;Note=Original (2000) note: Cj1505c%2C unknown%2C len: 190 aa%3B similar in N-term to hypothetical proteins e.g. Y990_METJA (75 aa)%2C fasta scores%3B opt: 121 z-score: 164.1 E(): 0.081%2C 33.3%25 identity in 69 aa overlap. No Hp match. Some simlarity to Cj1492c (21.1%25 identity in 190 aa overlap). Contains Pfam match to entry PF01206 UPF0033%2CUncharacterized protein family UPF0033%3B~Updated (2006) note: Pfam domain PF01206 SirA-like protein identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Functional classification - Signal transduction%3B~PMID:14645287;gbkey=CDS;inference=protein motif:Pfam:PF01206;locus_tag=Cj1505c;product=putative two-component response regulator (SirA-like protein);protein_id=CAL35611.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1440566	1440772	.	-	.	ID=id-Cj1505c;Note=HMMPfam hit to PF01206%2C SirA-like protein%2C score 5.6e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF01206;locus_tag=Cj1505c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1440883	1442985	.	-	.	ID=gene-Cj1506c;Name=Cj1506c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1506c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1440883	1442985	.	-	0	ID=cds-CAL35612.1;Parent=gene-Cj1506c;Dbxref=EnsemblGenomes-Gn:Cj1506c,EnsemblGenomes-Tr:CAL35612,GOA:Q0P8B2,InterPro:IPR003660,InterPro:IPR004089,UniProtKB/TrEMBL:Q0P8B2,NCBI_GP:CAL35612.1;Name=CAL35612.1;Note=Original (2000) note: Cj1506c%2C probable MCP-type signal transduction protein%2C len: 700 aa%3B similar to many e.g. TR:CAB38318 (EMBL:AJ132321) Halobacterium salinarium arginine chemotaxis CAR protein (452 aa)%2C fasta scores%3B opt: 382 z-score: 382.7 E(): 5.4e-14%2C 29.9%25 identity in 281 aa overlap. Contains two possible transmembrane domains and Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain. 35.3%25 identity to HP0099%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept in product function. Functional classification -Signal transduction%3B~PMID:9750306;gbkey=CDS;inference=protein motif:Pfam:PF00015;locus_tag=Cj1506c;product=putative MCP-type signal transduction protein;protein_id=CAL35612.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1441936	1442004	.	-	.	ID=id-Cj1506c;Note=2 probable transmembrane helices predicted for Cj1506c by TMHMM2.0 at aa 7-29 and 328-350;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1506c;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1442899	1442967	.	-	.	ID=id-Cj1506c;Note=2 probable transmembrane helices predicted for Cj1506c by TMHMM2.0 at aa 7-29 and 328-350;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1506c;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1440895	1441458	.	-	.	ID=id-Cj1506c-2;Note=HMMPfam hit to PF00015%2C Methyl-accepting chemotaxis protein (MCP) s%2C score 1.7e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF00015;locus_tag=Cj1506c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1443095	1443832	.	-	.	ID=gene-Cj1507c;Name=Cj1507c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1507c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1443095	1443832	.	-	0	ID=cds-CAL35613.1;Parent=gene-Cj1507c;Dbxref=EnsemblGenomes-Gn:Cj1507c,EnsemblGenomes-Tr:CAL35613,InterPro:IPR011991,UniProtKB/TrEMBL:Q0P8B1,NCBI_GP:CAL35613.1;Name=CAL35613.1;Note=Original (2000) note: Cj1507c%2C unknown%2C len: 245 aa%3B no Hp match%3B~Updated (2006) note: Pfam domain PF00126 Bacterial regulatory helix-turn-helix protein%2C lysR family identified within CDS. Product modified to more specific family based on motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Literature search identified paper giving further clues to product function. Functional classification - Broad regulatory functions%3B~PMID:14641908;gbkey=CDS;inference=protein motif:Pfam:PF00126;locus_tag=Cj1507c;product=putative regulatory protein;protein_id=CAL35613.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1443188	1443367	.	-	.	ID=id-Cj1507c;Note=HMMPfam hit to PF00126%2C Bacterial regulatory helix-turn-helix protei%2C score 4.4e-13;gbkey=misc_feature;inference=protein motif:Pfam:PF00126;locus_tag=Cj1507c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1443825	1444607	.	-	.	ID=gene-Cj1508c;Name=fdhD;gbkey=Gene;gene=fdhD;gene_biotype=protein_coding;locus_tag=Cj1508c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1443825	1444607	.	-	0	ID=cds-CAL35614.1;Parent=gene-Cj1508c;Dbxref=EnsemblGenomes-Gn:Cj1508c,EnsemblGenomes-Tr:CAL35614,GOA:Q0P8B0,InterPro:IPR003786,InterPro:IPR016193,UniProtKB/TrEMBL:Q0P8B0,NCBI_GP:CAL35614.1;Name=CAL35614.1;Note=Original (2000) note: Cj1508c%2C fdhD%2C FdhD protein (required for formate dehydrogenase activity)%2C len: 260 aa%3B similar to e.g. FDHD_WOLSU FDHD protein (286 aa)%2Cfasta scores%3B opt: 622 z-score: 728.9 E(): 0%2C 38.5%25 identity in 252 aa overlap%2C and FDHD_ECOLI FDHD protein (277 aa)%2C fasta scores%3B opt: 306 z-score: 363.8 E(): 6.1e-13%2C 25.0%25 identity in 244 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02634 FdhD/NarQ family identified within CDS. Further support given to product function. Characterisation work carried out within Wolinella succinogenes with acceptable identity score%2C so putative not added to product function. Functional classification - Energy metabolism - Respiration -Anaerobic%3B~PMID:1781728%2C PMID:2170340;gbkey=CDS;gene=fdhD;inference=protein motif:Pfam:PF02634;locus_tag=Cj1508c;product=FdhD protein;protein_id=CAL35614.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1443840	1444565	.	-	.	ID=id-Cj1508c;Note=HMMPfam hit to PF02634%2C FdhD/NarQ family%2C score 9.6e-48;gbkey=misc_feature;gene=fdhD;inference=protein motif:Pfam:PF02634;locus_tag=Cj1508c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1444774	1445706	.	-	.	ID=gene-Cj1509c;Name=fdhC;gbkey=Gene;gene=fdhC;gene_biotype=protein_coding;locus_tag=Cj1509c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1444774	1445706	.	-	0	ID=cds-CAL35615.1;Parent=gene-Cj1509c;Dbxref=EnsemblGenomes-Gn:Cj1509c,EnsemblGenomes-Tr:CAL35615,GOA:Q0P8A9,InterPro:IPR006471,InterPro:IPR011577,InterPro:IPR016174,UniProtKB/TrEMBL:Q0P8A9,NCBI_GP:CAL35615.1;Name=CAL35615.1;Note=Original (2000) note: Cj1509c%2C fdhC%2C probable formate dehydrogenase%2C cytochrome B subunit%2C len: 310 aa%3B similar to e.g. TR:P28180 (EMBL:X54057) Wolinella succinogenes formate dehydrogenase C precursor (306 aa)%2Cfasta scores%3B opt: 634 z-score: 759.3 E(): 0%2C 42.8%25 identity in 318 aa overlap%2C and FDNI_ECOLI formate dehydrogenase%2C nitrate-inducible%2C cytochrome B556(fdn) subunit (217 aa)%2C fasta scores%3B opt: 189 z-score: 234.3 E(): 9.9e-06%2C 25.5%25 identity in 212 aa overlap. No Hp ortholog%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Some characterisation in Wolinella succinogenes with acceptable identity score. Putative kept in product function. Functional classification - Energy metabolism - Respiration -Anaerobic%3B~PMID:9006048%2C PMID:1781728;gbkey=CDS;gene=fdhC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1509c;product=putative formate dehydrogenase%2C cytochrom B subunit;protein_id=CAL35615.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1444921	1444989	.	-	.	ID=id-Cj1509c;Note=6 probable transmembrane helices predicted for Cj1509c by TMHMM2.0 at aa 5-24%2C 56-78%2C 99-121%2C 136-156%2C194-216 and 240-262;gbkey=misc_feature;gene=fdhC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1509c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1445059	1445127	.	-	.	ID=id-Cj1509c;Note=6 probable transmembrane helices predicted for Cj1509c by TMHMM2.0 at aa 5-24%2C 56-78%2C 99-121%2C 136-156%2C194-216 and 240-262;gbkey=misc_feature;gene=fdhC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1509c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1445239	1445301	.	-	.	ID=id-Cj1509c;Note=6 probable transmembrane helices predicted for Cj1509c by TMHMM2.0 at aa 5-24%2C 56-78%2C 99-121%2C 136-156%2C194-216 and 240-262;gbkey=misc_feature;gene=fdhC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1509c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1445344	1445412	.	-	.	ID=id-Cj1509c;Note=6 probable transmembrane helices predicted for Cj1509c by TMHMM2.0 at aa 5-24%2C 56-78%2C 99-121%2C 136-156%2C194-216 and 240-262;gbkey=misc_feature;gene=fdhC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1509c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1445473	1445541	.	-	.	ID=id-Cj1509c;Note=6 probable transmembrane helices predicted for Cj1509c by TMHMM2.0 at aa 5-24%2C 56-78%2C 99-121%2C 136-156%2C194-216 and 240-262;gbkey=misc_feature;gene=fdhC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1509c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1445635	1445694	.	-	.	ID=id-Cj1509c;Note=6 probable transmembrane helices predicted for Cj1509c by TMHMM2.0 at aa 5-24%2C 56-78%2C 99-121%2C 136-156%2C194-216 and 240-262;gbkey=misc_feature;gene=fdhC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1509c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	gene	1445703	1446344	.	-	.	ID=gene-Cj1510c;Name=fdhB;gbkey=Gene;gene=fdhB;gene_biotype=protein_coding;locus_tag=Cj1510c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1445703	1446344	.	-	0	ID=cds-CAL35616.1;Parent=gene-Cj1510c;Dbxref=EnsemblGenomes-Gn:Cj1510c,EnsemblGenomes-Tr:CAL35616,GOA:Q0P8A8,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q0P8A8,NCBI_GP:CAL35616.1;Name=CAL35616.1;Note=Original (2000) note: Cj1510c%2C fdhB%2C probable formate dehydrogenase iron-sulfur subunit%2C len: 213 aa%3B similar to e.g. FDHB_WOLSU formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2) (200 aa)%2C fasta scores%3B opt: 1025 z-score: 1153.1 E(): 0%2C 69.5%25 identity in 197 aa overlap. No Hp ortholog. Contains PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature%2C and Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains%3B~Updated (2006) note: Some characterisation in Wolinella succinogenes with acceptable identity score. Putative kept within product function. Functional classification - Energy metabolism - Respiration -Anaerobic%3B~PMID:1781728%2C PMID:9006048;gbkey=CDS;gene=fdhB;inference=protein motif:Prosite:PS00198;locus_tag=Cj1510c;product=putative formate dehydrogenase iron-sulfur subunit;protein_id=CAL35616.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1446003	1446074	.	-	.	ID=id-Cj1510c;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 5e-07;gbkey=misc_feature;gene=fdhB;inference=protein motif:Pfam:PF00037;locus_tag=Cj1510c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1446018	1446053	.	-	.	ID=id-Cj1510c-2;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=fdhB;inference=protein motif:Prosite:PS00198;locus_tag=Cj1510c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1446341	1449145	.	-	.	ID=gene-Cj1511c;Name=fdhA;gbkey=Gene;gene=fdhA;gene_biotype=protein_coding;locus_tag=Cj1511c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1446341	1449145	.	-	0	ID=cds-CAL35617.1;Parent=gene-Cj1511c;Dbxref=EnsemblGenomes-Gn:Cj1511c,EnsemblGenomes-Tr:CAL35617,GOA:Q0P8A7,InterPro:IPR006311,InterPro:IPR006656,InterPro:IPR006657,InterPro:IPR006963,InterPro:IPR009010,InterPro:IPR027467,UniProtKB/TrEMBL:Q0P8A7,NCBI_GP:CAL35617.1;Name=CAL35617.1;Note=Original (2000) note: Cj1511c%2C fdhA%2C probable formate dehydrogenase large subunit%2C len: 934 aa%3B similar to e.g. TR:P28179 (EMBL:X54057) Wolinella succinogenes formate dehydrogenase large subunit precursor (EC 1.2.1.2)(939 aa)%2C fasta scores%3B opt: 3368 z-score: 3913.9 E(): 7.3e-211%2C 52.8%25 identity in 930 aa overlap%2C and FDHF_ECOLI formate dehydrogenase H (EC 1.2.1.2) (formate-hydrogen-lyase-linked%2C selenocysteine-containing polypeptide) (715 aa)%2C fasta scores%3B opt: 813 z-score: 943.1 E(): 2.2e-45%2C 30.9%25 identity in 696 aa overlap. No Hp match. Contains Pfam match to entry PF00384 molybdopterin%2C Prokaryotic molybdopterin oxidoreductases%2Cand PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. Note that TGA codes for Selenocysteine at codon 181 complement(1448602..1448604)%3B~Updated (2006) note: Different characterisation in Escherichia coli and Wolinella succinogenes with acceptable identity scores to both. Putative kept within product function. Functional classification - Energy metabolism - Respiration - Anaerobic%3B~PMID:2941757%2C PMID:9036855%2C PMID:9006048;gbkey=CDS;gene=fdhA;inference=protein motif:Prosite:PS00551;locus_tag=Cj1511c;product=putative formate dehydrogenase large subunit (Selenocysteine containing);protein_id=CAL35617.1;transl_except=(pos:complement(1448603..1448605)%2Caa:Sec);transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1446422	1446757	.	-	.	ID=id-Cj1511c;Note=HMMPfam hit to PF01568%2C Molydopterin dinucleotide binding dom%2C score 1.3e-17;gbkey=misc_feature;gene=fdhA;inference=protein motif:Pfam:PF01568;locus_tag=Cj1511c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1447484	1448827	.	-	.	ID=id-Cj1511c-2;Note=HMMPfam hit to PF00384%2C Molybdopterin oxidoreductase%2C score 1e-61;gbkey=misc_feature;gene=fdhA;inference=protein motif:Pfam:PF00384;locus_tag=Cj1511c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1448603	1448605	.	-	.	ID=id-Cj1511c-3;Note=TGA codes for Selenocysteine in Cj1511c;gbkey=misc_feature;gene=fdhA;locus_tag=Cj1511c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1448834	1448998	.	-	.	ID=id-Cj1511c-4;Note=HMMPfam hit to PF04879%2C Molybdopterin oxidoreductase Fe4S4 do%2C score 1.9e-19;gbkey=misc_feature;gene=fdhA;inference=protein motif:Pfam:PF04879;locus_tag=Cj1511c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1448930	1448983	.	-	.	ID=id-Cj1511c-5;Note=PS00551 Prokaryotic molybdopterin oxidoreductases signature 1;gbkey=misc_feature;gene=fdhA;inference=protein motif:Prosite:PS00551;locus_tag=Cj1511c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1449145	1449336	.	-	.	ID=gene-Cj1513c;Name=Cj1513c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1513c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1449145	1449336	.	-	0	ID=cds-CAL35618.1;Parent=gene-Cj1513c;Dbxref=EnsemblGenomes-Gn:Cj1513c,EnsemblGenomes-Tr:CAL35618,InterPro:IPR006311,InterPro:IPR019546,UniProtKB/TrEMBL:Q0P8A6,NCBI_GP:CAL35618.1;Name=CAL35618.1;Note=Original (2000) note: Cj1513c%2C possible periplasmic protein%2C len: 63 aa%3B no Hp match. Contains possible N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1513c;product=possible periplasmic protein;protein_id=CAL35618.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1449311	1450024	.	-	.	ID=gene-Cj1514c;Name=Cj1514c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1514c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1449311	1450024	.	-	0	ID=cds-CAL35619.1;Parent=gene-Cj1514c;Dbxref=EnsemblGenomes-Gn:Cj1514c,EnsemblGenomes-Tr:CAL35619,UniProtKB/TrEMBL:Q0P8A5,NCBI_GP:CAL35619.1;Name=CAL35619.1;Note=Original (2000) note: Cj1514c%2C unknown%2C len: 237 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj1514c;product=hypothetical protein Cj1514c;protein_id=CAL35619.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1450328	1451476	.	-	.	ID=gene-Cj1515c;Name=Cj1515c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1515c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1450328	1451476	.	-	0	ID=cds-CAL35620.1;Parent=gene-Cj1515c;Dbxref=EnsemblGenomes-Gn:Cj1515c,EnsemblGenomes-Tr:CAL35620,GOA:Q0P8A4,InterPro:IPR005730,InterPro:IPR009006,InterPro:IPR022643,InterPro:IPR029066,UniProtKB/TrEMBL:Q0P8A4,NCBI_GP:CAL35620.1;Name=CAL35620.1;Note=Original (2000) note: Cj1515c%2C probable decarboxylase%2C len: 382 aa%3B similar to TR:Q56575 (EMBL:D31783) Vibrio alginolyticus carboxynorspermidine decarboxylase (377 aa)%2C fasta scores%3B opt: 667 z-score: 807.5 E(): 0%2C 36.6%25 identity in 380 aa overlap. 45.8%25 identity to HP0020%3B~Updated (2006) note: Pfam domain PF00278 Pyridoxal-dependent decarboxylase%2C C-terminal identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF00278;locus_tag=Cj1515c;product=putative decarboxylase;protein_id=CAL35620.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1450391	1450747	.	-	.	ID=id-Cj1515c;Note=HMMPfam hit to PF00278%2C Pyridoxal-dependent decarboxylase%2C C-%2C score 0.0031;gbkey=misc_feature;inference=protein motif:Pfam:PF00278;locus_tag=Cj1515c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1451600	1453141	.	+	.	ID=gene-Cj1516;Name=Cj1516;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1516
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1451600	1453141	.	+	0	ID=cds-CAL35621.1;Parent=gene-Cj1516;Dbxref=EnsemblGenomes-Gn:Cj1516,EnsemblGenomes-Tr:CAL35621,GOA:Q0P8A3,InterPro:IPR001117,InterPro:IPR002355,InterPro:IPR008972,InterPro:IPR011706,InterPro:IPR011707,UniProtKB/TrEMBL:Q0P8A3,NCBI_GP:CAL35621.1;Name=CAL35621.1;Note=Original (2000) note: Cj1516%2C probable periplasmic oxidoreductase%2C len: 1539 aa%3B similar to members of the multicoper oxidase family e.g. YACK_ECOLI probable blue-copper protein yack precursor (516 aa)%2C fasta scores%3B opt: 376 z-score: 429.0 E(): 1.4e-16%2C 28.7%25 identity in 460 aa overlap%2C and BLRO_MYRVE bilirubin oxidase precursor (572 aa)%2C fasta scores%3B opt: 309 z-score: 352.2 E(): 2.7e-12%2C 24.8%25 identity in 499 aa overlap. No Hp match. Contains possible N-terminal signal sequence%2C Pfam match to entry PF00394 Cu-oxidase%2C Multicopper oxidase%2C and PS00080 Multicopper oxidases signature 2%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Prosite:PS00080;locus_tag=Cj1516;product=putative periplasmic oxidoreductase;protein_id=CAL35621.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1451861	1452217	.	+	.	ID=id-Cj1516;Note=HMMPfam hit to PF07732%2C Multicopper oxidase%2C score 3.7e-48;gbkey=misc_feature;inference=protein motif:Pfam:PF07732;locus_tag=Cj1516
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1452233	1452652	.	+	.	ID=id-Cj1516-2;Note=HMMPfam hit to PF00394%2C Multicopper oxidase%2C score 9.1e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF00394;locus_tag=Cj1516
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1452779	1453135	.	+	.	ID=id-Cj1516-3;Note=HMMPfam hit to PF07731%2C Multicopper oxidase%2C score 1.5e-18;gbkey=misc_feature;inference=protein motif:Pfam:PF07731;locus_tag=Cj1516
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1453079	1453114	.	+	.	ID=id-Cj1516-4;Note=PS00080 Multicopper oxidases signature 2;gbkey=misc_feature;inference=protein motif:Prosite:PS00080;locus_tag=Cj1516
gi|15791399|ref|NC_002163.1|	EMBL	gene	1453143	1453364	.	+	.	ID=gene-Cj1517;Name=moaD;gbkey=Gene;gene=moaD;gene_biotype=protein_coding;locus_tag=Cj1517
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1453143	1453364	.	+	0	ID=cds-CAL35622.1;Parent=gene-Cj1517;Dbxref=EnsemblGenomes-Gn:Cj1517,EnsemblGenomes-Tr:CAL35622,InterPro:IPR003749,InterPro:IPR012675,InterPro:IPR016155,UniProtKB/TrEMBL:Q0P8A2,NCBI_GP:CAL35622.1;Name=CAL35622.1;Note=Original (2000) note: Cj1517%2C moaD%2C possible molybdopterin converting factor%2C subunit 1%2C len: 73 aa%3B similar to many predicted moaD genes%2C e.g. TR:O31706 (EMBL:AF012285) Bacillus subtilis molybdopterin converting factor (subunit 1) (77 aa)%2C fasta scores%3B opt: 111 z-score: 167.7 E(): 0.051%2C 30.5%25 identity in 59 aa overlap%2C and weakly similar to MOAD_ECOLI molybdopterin [mpt] converting factor%2C subunit 1 (81 aa)%2C fasta scores%3B opt: 81 z-score: 127.5 E(): 8.8%2C 38.5%25 identity in 26 aa overlap. 61.6%25 identity to HP0801%3B~Updated (2006) note: Pfam domain PF02597 ThiS family identified within CDS. Further support given to product function. Specific characterisation with an acceptable similairty score has not been carried out yet%2Cso putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Molybdopterin;gbkey=CDS;gene=moaD;inference=protein motif:Pfam:PF02597;locus_tag=Cj1517;product=putative molybdopterin converting factor%2Csubunit 1;protein_id=CAL35622.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1453152	1453361	.	+	.	ID=id-Cj1517;Note=HMMPfam hit to PF02597%2C ThiS family%2C score 3.1e-13;gbkey=misc_feature;gene=moaD;inference=protein motif:Pfam:PF02597;locus_tag=Cj1517
gi|15791399|ref|NC_002163.1|	EMBL	gene	1453365	1453811	.	+	.	ID=gene-Cj1518;Name=moaE;gbkey=Gene;gene=moaE;gene_biotype=protein_coding;locus_tag=Cj1518
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1453365	1453811	.	+	0	ID=cds-CAL35623.1;Parent=gene-Cj1518;Dbxref=EnsemblGenomes-Gn:Cj1518,EnsemblGenomes-Tr:CAL35623,GOA:Q0P8A1,InterPro:IPR003448,UniProtKB/TrEMBL:Q0P8A1,NCBI_GP:CAL35623.1;Name=CAL35623.1;Note=Original (2000) note: Cj1518%2C moaE%2C possible molybdopterin converting factor%2C subunit 2%2C len: 148 aa%3B similar to many predicted moaE genes%2C e.g. TR:O31705 (EMBL:AF012285) Bacillus subtilis molybdopterin converting factor (subunit 2) (157 aa)%2C fasta scores%3B opt: 134 z-score: 182.4 E(): 0.0078%2C 25.2%25 identity in 131 aa overlap%2C and to MOAE_ECOLI molybdopterin [mpt] converting factor%2C subunit 2 (149 aa)%2C fasta scores opt: 133 z-score: 181.4 E(): 0.0087%2C 26.0%25 identity in 123 aa overlap. 50.4%25 identity to HP0800%3B~Updated (2006) note: Pfam domain PF02391 MoaE protein identified within CDS. Further support given to product function. Specific characterisation with acceptable similairty score has not been carried out yet%2Cso putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Molybdopterin;gbkey=CDS;gene=moaE;inference=protein motif:Pfam:PF02391;locus_tag=Cj1518;product=putative molybdopterin converting factor%2Csubunit 2;protein_id=CAL35623.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1453371	1453718	.	+	.	ID=id-Cj1518;Note=HMMPfam hit to PF02391%2C MoaE protein%2C score 0.00028;gbkey=misc_feature;gene=moaE;inference=protein motif:Pfam:PF02391;locus_tag=Cj1518
gi|15791399|ref|NC_002163.1|	EMBL	gene	1453815	1455005	.	+	.	ID=gene-Cj1519;Name=moeA2;gbkey=Gene;gene=moeA2;gene_biotype=protein_coding;locus_tag=Cj1519
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1453815	1455005	.	+	0	ID=cds-CAL35624.1;Parent=gene-Cj1519;Dbxref=EnsemblGenomes-Gn:Cj1519,EnsemblGenomes-Tr:CAL35624,GOA:Q0P8A0,InterPro:IPR001453,InterPro:IPR005110,InterPro:IPR005111,UniProtKB/TrEMBL:Q0P8A0,NCBI_GP:CAL35624.1;Name=CAL35624.1;Note=Original (2000) note: Cj1519%2C moeA2%2C probable molybdopterin biosynthesis protein%2C len: 396 aa%3B similar to e.g. MOEA_ECOLI molybdopterin biosynthesis MOEA protein (411 aa)%2C fasta scores%3B opt: 541 z-score: 624.0 E(): 1.9e-27%2C 29.2%25 identity in 366 aa overlap. No Hp ortholog%2Cbut 37.3%25 identity to HP0172. Also similar to Cj0857c moeA (33.3%25 identity in 378 aa overlap). Contains Pfam match to entry PF00994 MoCF_biosynth%2C Molybdenum cofactor biosynthesis protein%3B~Updated (2006) note: Pfam domains PF03453 MoeA N-terminal region (domain I and II)%2C PF00994 Probable molybdopterin binding domain and PF03454 MoeA C-terminal region (domain IV) were all identified within CDS. Further support given to product function. Specific characterisation with acceptable similairty score has not been carried out yet%2C so putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Molybdopterin;gbkey=CDS;gene=moeA2;inference=protein motif:Pfam:PF03454;locus_tag=Cj1519;product=putative molybdopterin biosynthesis protein;protein_id=CAL35624.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1453818	1454297	.	+	.	ID=id-Cj1519;Note=HMMPfam hit to PF03453%2C MoeA N-terminal region (domain I and II%2C score 1.3e-69;gbkey=misc_feature;gene=moeA2;inference=protein motif:Pfam:PF03453;locus_tag=Cj1519
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1454325	1454726	.	+	.	ID=id-Cj1519-2;Note=HMMPfam hit to PF00994%2C Probable molybdopterin binding domain%2C score 1.6e-30;gbkey=misc_feature;gene=moeA2;inference=protein motif:Pfam:PF00994;locus_tag=Cj1519
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1454778	1455002	.	+	.	ID=id-Cj1519-3;Note=HMMPfam hit to PF03454%2C MoeA C-terminal region (domain IV)%2C score 4.1e-16;gbkey=misc_feature;gene=moeA2;inference=protein motif:Pfam:PF03454;locus_tag=Cj1519
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1455126	1455424	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1455126..1455424;Note=CRISPR%3B~Updated (2006) note: Cj1520 has now been removed due to identification of CRISPR repeat region%3B~PMID:11952905%2C PMID:16612537%2C PMID:16545108;gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1455126	1455160	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1455126..1455160;Note=CRISPR repeat;gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1455192	1455226	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1455192..1455226;Note=CRISPR repeat;gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1455235	1455288	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1455235..1455288;Note=1 probable transmembrane helix predicted for Cj1520 by TMHMM2.0 at aa 46-63;gbkey=misc_feature;inference=protein motif:TMHMM:2.0
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1455258	1455292	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1455258..1455292;Note=CRISPR repeat;gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1455324	1455358	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1455324..1455358;Note=CRISPR repeat;gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1455390	1455424	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1455390..1455424;Note=CRISPR repeat;gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	gene	1455569	1456000	.	-	.	ID=gene-Cj1521c;Name=Cj1521c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1521c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1455569	1456000	.	-	0	ID=cds-CAL35625.1;Parent=gene-Cj1521c;Dbxref=EnsemblGenomes-Gn:Cj1521c,EnsemblGenomes-Tr:CAL35625,GOA:Q0P899,InterPro:IPR019199,InterPro:IPR021127,NCBI_GP:CAL35625.1;Name=CAL35625.1;Note=Original (2000) note: Cj1521c%2C unknown%2C len: 143 aa%3B no Hp match%3B~Updated (2006) note: Cj1521c%2CCJ1522c and Cj1523c are believed to be CRISPR-associated proteins that contribute to the CRISPR repeat region formation. Functional classification - Misc%3B~PMID:11952905%2C PMID:16612537%2C PMID:16545108;gbkey=CDS;locus_tag=Cj1521c;product=putative CRISPR-associated protein;protein_id=CAL35625.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1455993	1456883	.	-	.	ID=gene-Cj1522c;Name=Cj1522c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1522c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1455993	1456883	.	-	0	ID=cds-CAL35626.1;Parent=gene-Cj1522c;Dbxref=EnsemblGenomes-Gn:Cj1522c,EnsemblGenomes-Tr:CAL35626,GOA:Q0P898,InterPro:IPR002729,InterPro:IPR019855,UniProtKB/TrEMBL:Q0P898,NCBI_GP:CAL35626.1;Name=CAL35626.1;Note=Original (2000) note: Cj1522c%2C unknown%2C len: 296 aa%3B very weak simlarity to TR:O28401 (EMBL:AE000973) Archaeoglobus fulgidus AF1878 (345 aa)%2C fasta scores%3B opt: 156 z-score: 198.5 E(): 0.00099%2C 25.3%25 identity in 281 aa overlap. No Hp match%3B~Updated (2006) note: Cj1521c%2CCJ1522c and Cj1523c are believed to be CRISPR-associated proteins that contribute to the CRISPR repeat region formation. Functional classification - Misc%3B~PMID:11952905%2C PMID:16612537%2C PMID:16545108;gbkey=CDS;locus_tag=Cj1522c;product=putative CRISPR-associated protein;protein_id=CAL35626.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1456880	1459834	.	-	.	ID=gene-Cj1523c;Name=Cj1523c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1523c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1456880	1459834	.	-	0	ID=cds-CAL35627.1;Parent=gene-Cj1523c;Dbxref=EnsemblGenomes-Gn:Cj1523c,EnsemblGenomes-Tr:CAL35627,GOA:Q0P897,InterPro:IPR025978,InterPro:IPR028629,NCBI_GP:CAL35627.1;Name=CAL35627.1;Note=Original (2000) note: Cj1523c%2C unknown%2C len: 984 aa%3B no Hp match%3B~Updated (2006) note: Cj1521c%2CCJ1522c and Cj1523c are believed to be CRISPR-associated proteins that contribute to the CRISPR repeat region formation. Functional classification - Misc%3B~PMID:11952905%2C PMID:16612537%2C PMID:16545108;gbkey=CDS;locus_tag=Cj1523c;product=putative CRISPR-associated protein;protein_id=CAL35627.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	1460037	1460382	.	+	.	ID=gene-Cj1528;Name=Cj1528;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj1528;part=1/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	1460384	1460668	.	+	.	ID=gene-Cj1528;Name=Cj1528;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj1528;part=2/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	1460670	1460786	.	+	.	ID=gene-Cj1528;Name=Cj1528;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj1528;part=3/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	pseudogene	1460788	1461474	.	+	.	ID=gene-Cj1528;Name=Cj1528;gbkey=Gene;gene_biotype=pseudogene;is_ordered=true;locus_tag=Cj1528;part=4/4;pseudo=true
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1460037	1460126	.	+	0	ID=cds-Cj1528;Parent=gene-Cj1528;Note=Original (2000) note: Cj1528%2C probable transmembrane transport protein pseudogene%2C len: 1191 bp%3B similar to DCUC_ECOLI C4-dicarboxylate anaerobic carrier (461 aa)%2C approx. 31.6%25 identity%2C and YHCL_ECOLI (455 aa) approx. 28.0%25 identity. No Hp match. Some similarity to Cj1389 (probable transmembrane transport protein pseudogene)%2C approx. 36.7%25 identity. May extend further upstream%3B~Updated (2006) note: Pfam domain PF03606 C4-dicarboxylate anaerobic carrier identified within CDS. Also%2C ten probable transmembrane helices predicted for Cj1528 by TMHMM2.0. Further support given to product function. Product is a pseudogene%2C however%2C was modified to more specific family member based on motif match. Identity scores were marginal%2C so putative was kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:10525738;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1528;product=pseudogene (putative C4-dicarboxylate anaerobic carrier);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1460126	1460236	.	+	0	ID=cds-Cj1528;Parent=gene-Cj1528;Note=Original (2000) note: Cj1528%2C probable transmembrane transport protein pseudogene%2C len: 1191 bp%3B similar to DCUC_ECOLI C4-dicarboxylate anaerobic carrier (461 aa)%2C approx. 31.6%25 identity%2C and YHCL_ECOLI (455 aa) approx. 28.0%25 identity. No Hp match. Some similarity to Cj1389 (probable transmembrane transport protein pseudogene)%2C approx. 36.7%25 identity. May extend further upstream%3B~Updated (2006) note: Pfam domain PF03606 C4-dicarboxylate anaerobic carrier identified within CDS. Also%2C ten probable transmembrane helices predicted for Cj1528 by TMHMM2.0. Further support given to product function. Product is a pseudogene%2C however%2C was modified to more specific family member based on motif match. Identity scores were marginal%2C so putative was kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:10525738;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1528;product=pseudogene (putative C4-dicarboxylate anaerobic carrier);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1460236	1460382	.	+	0	ID=cds-Cj1528;Parent=gene-Cj1528;Note=Original (2000) note: Cj1528%2C probable transmembrane transport protein pseudogene%2C len: 1191 bp%3B similar to DCUC_ECOLI C4-dicarboxylate anaerobic carrier (461 aa)%2C approx. 31.6%25 identity%2C and YHCL_ECOLI (455 aa) approx. 28.0%25 identity. No Hp match. Some similarity to Cj1389 (probable transmembrane transport protein pseudogene)%2C approx. 36.7%25 identity. May extend further upstream%3B~Updated (2006) note: Pfam domain PF03606 C4-dicarboxylate anaerobic carrier identified within CDS. Also%2C ten probable transmembrane helices predicted for Cj1528 by TMHMM2.0. Further support given to product function. Product is a pseudogene%2C however%2C was modified to more specific family member based on motif match. Identity scores were marginal%2C so putative was kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:10525738;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1528;product=pseudogene (putative C4-dicarboxylate anaerobic carrier);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1460384	1460668	.	+	0	ID=cds-Cj1528;Parent=gene-Cj1528;Note=Original (2000) note: Cj1528%2C probable transmembrane transport protein pseudogene%2C len: 1191 bp%3B similar to DCUC_ECOLI C4-dicarboxylate anaerobic carrier (461 aa)%2C approx. 31.6%25 identity%2C and YHCL_ECOLI (455 aa) approx. 28.0%25 identity. No Hp match. Some similarity to Cj1389 (probable transmembrane transport protein pseudogene)%2C approx. 36.7%25 identity. May extend further upstream%3B~Updated (2006) note: Pfam domain PF03606 C4-dicarboxylate anaerobic carrier identified within CDS. Also%2C ten probable transmembrane helices predicted for Cj1528 by TMHMM2.0. Further support given to product function. Product is a pseudogene%2C however%2C was modified to more specific family member based on motif match. Identity scores were marginal%2C so putative was kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:10525738;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1528;product=pseudogene (putative C4-dicarboxylate anaerobic carrier);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1460670	1460786	.	+	0	ID=cds-Cj1528;Parent=gene-Cj1528;Note=Original (2000) note: Cj1528%2C probable transmembrane transport protein pseudogene%2C len: 1191 bp%3B similar to DCUC_ECOLI C4-dicarboxylate anaerobic carrier (461 aa)%2C approx. 31.6%25 identity%2C and YHCL_ECOLI (455 aa) approx. 28.0%25 identity. No Hp match. Some similarity to Cj1389 (probable transmembrane transport protein pseudogene)%2C approx. 36.7%25 identity. May extend further upstream%3B~Updated (2006) note: Pfam domain PF03606 C4-dicarboxylate anaerobic carrier identified within CDS. Also%2C ten probable transmembrane helices predicted for Cj1528 by TMHMM2.0. Further support given to product function. Product is a pseudogene%2C however%2C was modified to more specific family member based on motif match. Identity scores were marginal%2C so putative was kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:10525738;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1528;product=pseudogene (putative C4-dicarboxylate anaerobic carrier);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1460788	1461474	.	+	0	ID=cds-Cj1528;Parent=gene-Cj1528;Note=Original (2000) note: Cj1528%2C probable transmembrane transport protein pseudogene%2C len: 1191 bp%3B similar to DCUC_ECOLI C4-dicarboxylate anaerobic carrier (461 aa)%2C approx. 31.6%25 identity%2C and YHCL_ECOLI (455 aa) approx. 28.0%25 identity. No Hp match. Some similarity to Cj1389 (probable transmembrane transport protein pseudogene)%2C approx. 36.7%25 identity. May extend further upstream%3B~Updated (2006) note: Pfam domain PF03606 C4-dicarboxylate anaerobic carrier identified within CDS. Also%2C ten probable transmembrane helices predicted for Cj1528 by TMHMM2.0. Further support given to product function. Product is a pseudogene%2C however%2C was modified to more specific family member based on motif match. Identity scores were marginal%2C so putative was kept within product function. Coding sequence has been updated to reflect the complete amino acid sequence for the encoded protein regardless of its expression. This will cause differences from the amino acid sequence of the previous annotation. Functional classification - Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:10525738;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1528;product=pseudogene (putative C4-dicarboxylate anaerobic carrier);pseudo=true;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460046	1460126	.	+	.	ID=id-Cj1528;Note=HMMPfam hit to PF03606%2C C4-dicarboxylate anaerobic carrier%2C score 5.5e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF03606;is_ordered=true;locus_tag=Cj1528;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460126	1460236	.	+	.	ID=id-Cj1528;Note=HMMPfam hit to PF03606%2C C4-dicarboxylate anaerobic carrier%2C score 5.5e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF03606;is_ordered=true;locus_tag=Cj1528;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460236	1460382	.	+	.	ID=id-Cj1528;Note=HMMPfam hit to PF03606%2C C4-dicarboxylate anaerobic carrier%2C score 5.5e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF03606;is_ordered=true;locus_tag=Cj1528;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460384	1460668	.	+	.	ID=id-Cj1528;Note=HMMPfam hit to PF03606%2C C4-dicarboxylate anaerobic carrier%2C score 5.5e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF03606;is_ordered=true;locus_tag=Cj1528;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460670	1460786	.	+	.	ID=id-Cj1528;Note=HMMPfam hit to PF03606%2C C4-dicarboxylate anaerobic carrier%2C score 5.5e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF03606;is_ordered=true;locus_tag=Cj1528;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460788	1461423	.	+	.	ID=id-Cj1528;Note=HMMPfam hit to PF03606%2C C4-dicarboxylate anaerobic carrier%2C score 5.5e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF03606;is_ordered=true;locus_tag=Cj1528;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460046	1460099	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=1/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460112	1460126	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=2/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460126	1460179	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=3/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460236	1460236	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=4/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460236	1460304	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=5/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460390	1460494	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=6/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460633	1460668	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=7/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460670	1460702	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=8/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460778	1460786	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=9/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460788	1460847	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=10/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460857	1460910	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=11/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1460947	1461015	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=12/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1461091	1461159	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=13/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1461367	1461420	.	+	.	ID=id-Cj1528-2;Note=10 probable transmembrane helices predicted for Cj1528 by TMHMM2.0 at aa 4-21%2C 26-48%2C 68-90%2C 119-153%2C200-222%2C 248-270%2C 274-291%2C 304-326%2C 352-374 and 444-461;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1528;part=14/14;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1461504	1462493	.	-	.	ID=gene-Cj1529c;Name=purM;gbkey=Gene;gene=purM;gene_biotype=protein_coding;locus_tag=Cj1529c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1461504	1462493	.	-	0	ID=cds-CAL35629.1;Parent=gene-Cj1529c;Dbxref=EnsemblGenomes-Gn:Cj1529c,EnsemblGenomes-Tr:CAL35629,GOA:Q0P896,InterPro:IPR000728,InterPro:IPR004733,InterPro:IPR010918,InterPro:IPR016188,UniProtKB/TrEMBL:Q0P896,NCBI_GP:CAL35629.1;Name=CAL35629.1;Note=Original (2000) note: Cj1529c%2C purM%2C probable phosphoribosylformylglycinamidine cyclo-ligase%2C len: 329 aa%3B similar to many e.g. PUR5_ECOLI phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) (344 aa)%2C fatsa scores%3B opt: 1055 z-score: 1258.2 E(): 0%2C 52.7%25 identity in 330 aa overlap. No Hp match. Contains PS00070 Aldehyde dehydrogenases cysteine active site%2C and Pfam match to entry PF00586 AIRS%2C AIR synthase related proteins%3B~Updated (2006) note: Characterised in Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Purine ribonucleotide biosynthesis%3B~PMID:3530323%2C PMID:10508786;gbkey=CDS;gene=purM;inference=protein motif:Prosite:PS00070;locus_tag=Cj1529c;product=phosphoribosylformylglycinamidine cyclo-ligase;protein_id=CAL35629.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1461507	1461980	.	-	.	ID=id-Cj1529c;Note=HMMPfam hit to PF02769%2C AIR synthase related protein%2C C-terminal dom%2C score 7.4e-38;gbkey=misc_feature;gene=purM;inference=protein motif:Pfam:PF02769;locus_tag=Cj1529c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1461519	1461554	.	-	.	ID=id-Cj1529c-2;Note=PS00070 Aldehyde dehydrogenases cysteine active site;gbkey=misc_feature;gene=purM;inference=protein motif:Prosite:PS00070;locus_tag=Cj1529c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1462011	1462493	.	-	.	ID=id-Cj1529c-3;Note=HMMPfam hit to PF00586%2C AIR synthase related protein%2C N-terminal dom%2C score 3.6e-58;gbkey=misc_feature;gene=purM;inference=protein motif:Pfam:PF00586;locus_tag=Cj1529c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1462554	1463159	.	+	.	ID=gene-Cj1530;Name=coaE;gbkey=Gene;gene=coaE;gene_biotype=protein_coding;locus_tag=Cj1530
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1462554	1463159	.	+	0	ID=cds-CAL35630.1;Parent=gene-Cj1530;Dbxref=EnsemblGenomes-Gn:Cj1530,EnsemblGenomes-Tr:CAL35630,GOA:Q9PMD9,InterPro:IPR001977,InterPro:IPR027417,NCBI_GP:CAL35630.1;Name=CAL35630.1;Note=Original (2000) note: Cj1530%2C probable ATP/GTP-binding protein%2C len: 201 aa%3B similar to hypothetical proteins e.g. YTAG_BACSU (197 aa)%2C fasta scores%3B opt: 346 z-score: 404.6 E(): 3.2e-15%2C 33.0%25 identity in 188 aa overlap. 37.4%25 identity to HP0831. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2Cand Pfam match to entry PF01121 UPF0038%2C Uncharacterized protein family UPF0038%3B~Updated (2006) note: Pfam domain PF01121 Dephospho-CoA kinase identified within CDS. Product modified to more specific family member based on motif match. Characterisation has been carried out within Escherichia coli%2C however%2C identity score was not acceptable%2C so putative was kept within product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Pantothenate%3B~PMID:11292795%2C PMID:10493123;gbkey=CDS;gene=coaE;inference=protein motif:Prosite:PS00017;locus_tag=Cj1530;product=putative dephospho-CoA kinase;protein_id=CAL35630.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1462560	1462592	.	+	.	ID=id-Cj1530;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=coaE;inference=protein motif:Prosite:PS00013;locus_tag=Cj1530
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1462578	1462601	.	+	.	ID=id-Cj1530-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=coaE;inference=protein motif:Prosite:PS00017;locus_tag=Cj1530
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1462584	1463105	.	+	.	ID=id-Cj1530-3;Note=HMMPfam hit to PF01121%2C Dephospho-CoA kinase%2C score 1.6e-29;gbkey=misc_feature;gene=coaE;inference=protein motif:Pfam:PF01121;locus_tag=Cj1530
gi|15791399|ref|NC_002163.1|	EMBL	gene	1463156	1463905	.	+	.	ID=gene-Cj1531;Name=dapF;gbkey=Gene;gene=dapF;gene_biotype=protein_coding;locus_tag=Cj1531
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1463156	1463905	.	+	0	ID=cds-CAL35631.1;Parent=gene-Cj1531;Dbxref=EnsemblGenomes-Gn:Cj1531,EnsemblGenomes-Tr:CAL35631,GOA:Q9PMD8,InterPro:IPR001653,InterPro:IPR018510,NCBI_GP:CAL35631.1;Name=CAL35631.1;Note=Original (2000) note: Cj1531%2C dapF%2C probable diaminopimelate epimerase%2C len: 249 aa%3B similar to e.g. DAPF_BACSU diaminopimelate epimerase (EC 5.1.1.7) (284 aa)%2C fasta scores%3B opt: 212 z-score: 260.8 E(): 3.3e-07%2C27.1%25 identity in 280 aa overlap%2C and DAPF_ECOLI diaminopimelate epimerase (EC 5.1.1.7) (275 aa)%2C fasta scores%3B opt: 195 z-score: 240.8 E(): 4.3e-06%2C 24.4%25 identity in 270 aa overlap. 41.6%25 identity to HP0566%3B~Updated (2006) note: Pfam domains x2 PF01678 Diaminopimelate epimerase identified within CDS. Further support given to product function. Characterised in Bacillus subtilis and Escherichia coli with marginal identity scores. Appropriate motifs present. Thus%2Cputative not added to product function. Functional classification - Amino acid biosynthesis - Aspartate family%3B~PMID:3031013;gbkey=CDS;gene=dapF;inference=protein motif:Pfam:PF01678;locus_tag=Cj1531;product=diaminopimelate epimerase;protein_id=CAL35631.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1463162	1463509	.	+	.	ID=id-Cj1531;Note=HMMPfam hit to PF01678%2C Diaminopimelate epimerase%2Cscore 1.7e-20;gbkey=misc_feature;gene=dapF;inference=protein motif:Pfam:PF01678;locus_tag=Cj1531
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1463333	1463377	.	+	.	ID=id-Cj1531-2;Note=PS01326 Diaminopimelate epimerase signature;gbkey=misc_feature;gene=dapF;inference=protein motif:Prosite:PS01326;locus_tag=Cj1531
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1463543	1463878	.	+	.	ID=id-Cj1531-3;Note=HMMPfam hit to PF01678%2C Diaminopimelate epimerase%2Cscore 1e-07;gbkey=misc_feature;gene=dapF;inference=protein motif:Pfam:PF01678;locus_tag=Cj1531
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1463720	1463752	.	+	.	ID=id-Cj1531-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=dapF;inference=protein motif:Prosite:PS00013;locus_tag=Cj1531
gi|15791399|ref|NC_002163.1|	EMBL	gene	1463880	1464611	.	+	.	ID=gene-Cj1532;Name=Cj1532;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1532
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1463880	1464611	.	+	0	ID=cds-CAL35632.1;Parent=gene-Cj1532;Dbxref=EnsemblGenomes-Gn:Cj1532,EnsemblGenomes-Tr:CAL35632,GOA:Q0P893,InterPro:IPR002901,UniProtKB/TrEMBL:Q0P893,NCBI_GP:CAL35632.1;Name=CAL35632.1;Note=Original (2000) note: Cj1532%2C possible periplasmic protein%2C len: 243 aa%3B some similarity to N-terminus of BAX_ECOLI BAX protein (274 aa)%2C fasta scores%3B opt: 240 z-score: 286.1 E(): 1.3e-08%2C 38.3%25 identity in 120 aa overlap. No Hp match. Contains possible N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase (Glucosaminidase) identified within CDS. No specific characterisation carried out yet%2C so putative kept within product function. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Pfam:PF01832;locus_tag=Cj1532;product=putative periplasmic protein;protein_id=CAL35632.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1464168	1464578	.	+	.	ID=id-Cj1532;Note=HMMPfam hit to PF01832%2C Mannosyl-glycoprotein endo-beta-N-ace%2C score 0.0034;gbkey=misc_feature;inference=protein motif:Pfam:PF01832;locus_tag=Cj1532
gi|15791399|ref|NC_002163.1|	EMBL	gene	1464608	1465645	.	-	.	ID=gene-Cj1533c;Name=Cj1533c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1533c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1464608	1465645	.	-	0	ID=cds-CAL35633.1;Parent=gene-Cj1533c;Dbxref=EnsemblGenomes-Gn:Cj1533c,EnsemblGenomes-Tr:CAL35633,UniProtKB/TrEMBL:Q0P892,NCBI_GP:CAL35633.1;Name=CAL35633.1;Note=Original (2000) note: Cj1533c%2C unknown%2C len: 345 aa%3B 27.9%25 identity to HP1321. Contains possible helix-turn-helix motif at aa 191-212 (Score 1065%2C +2.81 SD). Functional classification - Broad regulatory functions;gbkey=CDS;locus_tag=Cj1533c;product=putative helix-turn-helix containing protein;protein_id=CAL35633.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1465710	1466159	.	-	.	ID=gene-Cj1534c;Name=Cj1534c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1534c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1465710	1466159	.	-	0	ID=cds-CAL35634.1;Parent=gene-Cj1534c;Dbxref=EnsemblGenomes-Gn:Cj1534c,EnsemblGenomes-Tr:CAL35634,GOA:Q0P891,InterPro:IPR002177,InterPro:IPR008331,InterPro:IPR009078,InterPro:IPR012347,PDB:3KWO,NCBI_GP:CAL35634.1;Name=CAL35634.1;Note=Original (2000) note: Cj1534c%2C possible bacterioferritin%2C len: 149 aa%3B similar to many members of the DPS family e.g. NAPA_HELPY neutrophil-activating protein A (%3DHP0243) (bacterioferritin)(144 aa)%2C fasta scores%3B opt: 397 z-score: 495.1 E(): 3e-20%2C 41.3%25 identity in 143 aa overlap%2C TPF1_TREPA antigen TPF1 (176 aa)%2C fasta scores%3B opt: 296 z-score: 372.0 E(): 2.1e-13%2C 33.3%25 identity in 144 aa overlap%2C MRGA_BACSU metalloregulation DNA-binding stress protein (153 aa)%2C fasta scores%3B opt: 234 z-score: 298.1 E(): 2.8e-09%2C 33.1%25 identity in 127 aa overlap%2C and FRI_LISIN non-heme iron-containing ferritin (156 aa)%2C fasta scores%3B opt: 226 z-score: 288.3 E(): 9.8e-09%2C 31.8%25 identity in 148 aa overlap%3B~Updated (2006) note: Pfam domain PF00210 Ferritin-like domain identified within CDS. Further support given to product function. Putative kept within product function. Paper identified linking protein to glycoprotein (PMID:12186869). Functional classification -Transport/binding proteins - Cations%3B~PMID:7883175%2C PMID:8709848%2C PMID:12186869;gbkey=CDS;inference=protein motif:Pfam:PF00210;locus_tag=Cj1534c;product=putative bacterioferritin;protein_id=CAL35634.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1465713	1466159	.	-	.	ID=id-Cj1534c;Note=HMMPfam hit to PF00210%2C Ferritin-like domain%2C score 2.5e-39;gbkey=misc_feature;inference=protein motif:Pfam:PF00210;locus_tag=Cj1534c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1466289	1467509	.	-	.	ID=gene-Cj1535c;Name=pgi;gbkey=Gene;gene=pgi;gene_biotype=protein_coding;locus_tag=Cj1535c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1466289	1467509	.	-	0	ID=cds-CAL35635.1;Parent=gene-Cj1535c;Dbxref=EnsemblGenomes-Gn:Cj1535c,EnsemblGenomes-Tr:CAL35635,GOA:Q9PMD4,InterPro:IPR001672,InterPro:IPR018189,NCBI_GP:CAL35635.1;Name=CAL35635.1;Note=Original (2000) note: Cj1535c%2C pgi%2C possible glucose-6-phosphate isomerase%2C len: 406 aa%3B similar to e.g. G6PI_BACSU glucose-6-phosphate isomerase (EC 5.3.1.9) (450 aa)%2C fats scores%3B opt: 469 z-score: 569.6 E(): 2.1e-24%2C 29.3%25 identity in 382 aa overlap. 26.1%25 identity to HP1166. Contains PS00174 Phosphoglucose isomerase signature 2%2C and Pfam match to entry PF00342 PGI%2CPhosphoglucose isomerase%3B~Updated (2006) note: Some characterisation has been carried out with different genus%2C however%2C not matching with acceptable identity score%2C so putative kept within product function. Functional classification - Energy metabolism - Glycolysis%3B~PMID:2549364%2C PMID:6352406;gbkey=CDS;gene=pgi;inference=protein motif:Prosite:PS00174;locus_tag=Cj1535c;product=putative glucose-6-phosphate isomerase;protein_id=CAL35635.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1466292	1467503	.	-	.	ID=id-Cj1535c;Note=HMMPfam hit to PF00342%2C Phosphoglucose isomerase%2Cscore 1.9e-14;gbkey=misc_feature;gene=pgi;inference=protein motif:Pfam:PF00342;locus_tag=Cj1535c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1466319	1466372	.	-	.	ID=id-Cj1535c-2;Note=PS00174 Phosphoglucose isomerase signature 2;gbkey=misc_feature;gene=pgi;inference=protein motif:Prosite:PS00174;locus_tag=Cj1535c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1467297	1467329	.	-	.	ID=id-Cj1535c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=pgi;inference=protein motif:Prosite:PS00013;locus_tag=Cj1535c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1467503	1468327	.	-	.	ID=gene-Cj1536c;Name=galU;gbkey=Gene;gene=galU;gene_biotype=protein_coding;locus_tag=Cj1536c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1467503	1468327	.	-	0	ID=cds-CAL35636.1;Parent=gene-Cj1536c;Dbxref=EnsemblGenomes-Gn:Cj1536c,EnsemblGenomes-Tr:CAL35636,GOA:Q0P889,InterPro:IPR005771,InterPro:IPR005835,InterPro:IPR029044,UniProtKB/TrEMBL:Q0P889,NCBI_GP:CAL35636.1;Name=CAL35636.1;Note=Original (2000) note: Cj1536c%2C galU%2C probable UTP--glucose-1-phosphate uridylyltransferase%2C len: 274 aa%3B highly similar to many e.g. GALU_PSEAE UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) (279 aa)%2C fasta scores%3B opt: 1245 z-score: 1547.3 E(): 0%2C65.9%25 identity in 270 aa overlap. 61.3%25 identity to HP0646. Contains Pfam match to entry PF00483 NTP_transferase%2C Nucleotidyl transferase%3B~Updated (2006) note: Characterised in Pseudomonas aeruginosa with acceptable identity score. Thus%2C putative was not added to product function. Functional classification - Degradation - Carbon compounds%3B~PMID:8169209;gbkey=CDS;gene=galU;inference=protein motif:Pfam:PF00483;locus_tag=Cj1536c;product=UTP--glucose-1-phosphate uridylyltransferase;protein_id=CAL35636.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1467512	1468303	.	-	.	ID=id-Cj1536c;Note=HMMPfam hit to PF00483%2C Nucleotidyl transferase%2Cscore 3.3e-12;gbkey=misc_feature;gene=galU;inference=protein motif:Pfam:PF00483;locus_tag=Cj1536c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1468409	1470382	.	-	.	ID=gene-Cj1537c;Name=acs;gbkey=Gene;gene=acs;gene_biotype=protein_coding;locus_tag=Cj1537c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1468409	1470382	.	-	0	ID=cds-CAL35637.1;Parent=gene-Cj1537c;Dbxref=EnsemblGenomes-Gn:Cj1537c,EnsemblGenomes-Tr:CAL35637,GOA:Q9PMD2,InterPro:IPR000873,InterPro:IPR011904,InterPro:IPR020845,InterPro:IPR025110,NCBI_GP:CAL35637.1;Name=CAL35637.1;Note=Original (2000) note: Cj1537c%2C acs%2C probable acetyl-coenzyme A synthetase%2C len: 657 aa%3B simlar to many e.g. ACSA_ECOLI acetyl-coenzyme A synthetase (EC 6.2.1.1) (652 aa)%2C fasta scores%3B opt: 2026 z-score: 2329.3 E(): 0%2C48.9%25 identity in 619 aa overlap. 69.3%25 identity to HP1045. Contains PS00455 Putative AMP-binding domain signature%2C and Pfam match to entry PF00501 AMP-binding%2CAMP-binding enzyme%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score%2C so putative not added to product function. Functional classification - Fatty acid biosynthesis%3B~PMID:7751300;gbkey=CDS;gene=acs;inference=protein motif:Prosite:PS00455;locus_tag=Cj1537c;product=acetyl-coenzyme A synthetase;protein_id=CAL35637.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1468730	1470055	.	-	.	ID=id-Cj1537c;Note=HMMPfam hit to PF00501%2C AMP-binding enzyme%2C score 7.8e-133;gbkey=misc_feature;gene=acs;inference=protein motif:Pfam:PF00501;locus_tag=Cj1537c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1469567	1469602	.	-	.	ID=id-Cj1537c-2;Note=PS00455 Putative AMP-binding domain signature;gbkey=misc_feature;gene=acs;inference=protein motif:Prosite:PS00455;locus_tag=Cj1537c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1470520	1471515	.	-	.	ID=gene-Cj1538c;Name=Cj1538c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1538c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1470520	1471515	.	-	0	ID=cds-CAL35638.1;Parent=gene-Cj1538c;Dbxref=EnsemblGenomes-Gn:Cj1538c,EnsemblGenomes-Tr:CAL35638,GOA:Q0P887,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P887,NCBI_GP:CAL35638.1;Name=CAL35638.1;Note=Original (2000) note: Cj1538c%2C possible anion-uptake ABC-transport system ATP-binding protein%2Clen: 331 aa%3B similar to many e.g. LACK_AGRRD lactose transport ATP-binding protein LACK (363 aa)%2C fasta scores%3B opt: 319 z-score: 386.4 E(): 3.3e-14%2C 28.8%25 identity in 208 aa overlap%2C and UGPC_ECOLI SN-glycerol-3-phosphate transport ATP-binding protein (356 aa)%2C fasta scores%3B opt: 298 z-score: 361.6 E(): 8.1e-13%2C 32.1%25 identity in 196 aa overlap. No Hp ortholog. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters. Putative identification as anion-uptake is due to similarities of associated permease Cj1539c%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept in product function. Functional classification -Transport/binding proteins - Anions;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj1538c;product=putative anion-uptake ABC-transport system ATP-binding protein;protein_id=CAL35638.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1470523	1470534	.	-	.	ID=id-Cj1538c;Note=PS00294 Prenyl group binding site (CAAX box);gbkey=misc_feature;inference=protein motif:Prosite:PS00294;locus_tag=Cj1538c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1470898	1471437	.	-	.	ID=id-Cj1538c-2;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 5.1e-23;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj1538c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1471084	1471128	.	-	.	ID=id-Cj1538c-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj1538c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1471393	1471416	.	-	.	ID=id-Cj1538c-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1538c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1471517	1472236	.	-	.	ID=gene-Cj1539c;Name=Cj1539c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1539c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1471517	1472236	.	-	0	ID=cds-CAL35639.1;Parent=gene-Cj1539c;Dbxref=EnsemblGenomes-Gn:Cj1539c,EnsemblGenomes-Tr:CAL35639,GOA:Q0P886,InterPro:IPR000515,UniProtKB/TrEMBL:Q0P886,NCBI_GP:CAL35639.1;Name=CAL35639.1;Note=Original (2000) note: Cj1539c%2C possible anion-uptake ABC-transport system permease protein%2C len: 239 aa%3B similar to many involved in anion uptake e.g. CYST_ECOLI sulfate transport system permease protein (277 aa)%2C fasta scores%3B opt: 235 z-score: 293.7 E(): 4.9e-09%2C23.6%25 identity in 220 aa overlap%2C and MODB_ECOLI molybdenum transport system permease proteim (229 aa)%2Cfasta scores%3B opt: 201 z-score: 253.9 E(): 8.1e-07%2C 25.2%25 identity in 214 aa overlap. No Hp otholog%3B~Updated (2006) note: Pfam domain PF00528 Binding-protein-dependent transport system inner membrane component identified within CDS. Also%2C five probable transmembrane helices predicted by TMHMM2.0. No specific characterisation with acceptable identity score%2C so putative kept within product function. Functional classification - Transport/binding proteins - Anions;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1539c;product=putative anion-uptake ABC-transport system permease protein;protein_id=CAL35639.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1471535	1471603	.	-	.	ID=id-Cj1539c;Note=5 probable transmembrane helices predicted for Cj1539c by TMHMM2.0 at aa 43-65%2C 72-94%2C 109-131%2C 165-187 and 212-234;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1539c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1471676	1471744	.	-	.	ID=id-Cj1539c;Note=5 probable transmembrane helices predicted for Cj1539c by TMHMM2.0 at aa 43-65%2C 72-94%2C 109-131%2C 165-187 and 212-234;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1539c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1471844	1471912	.	-	.	ID=id-Cj1539c;Note=5 probable transmembrane helices predicted for Cj1539c by TMHMM2.0 at aa 43-65%2C 72-94%2C 109-131%2C 165-187 and 212-234;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1539c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1471955	1472023	.	-	.	ID=id-Cj1539c;Note=5 probable transmembrane helices predicted for Cj1539c by TMHMM2.0 at aa 43-65%2C 72-94%2C 109-131%2C 165-187 and 212-234;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1539c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1472042	1472110	.	-	.	ID=id-Cj1539c;Note=5 probable transmembrane helices predicted for Cj1539c by TMHMM2.0 at aa 43-65%2C 72-94%2C 109-131%2C 165-187 and 212-234;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1539c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1471520	1472128	.	-	.	ID=id-Cj1539c-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 7.8e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF00528;locus_tag=Cj1539c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1472282	1473091	.	+	.	ID=gene-Cj1540;Name=Cj1540;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1540
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1472282	1473091	.	+	0	ID=cds-CAL35640.1;Parent=gene-Cj1540;Dbxref=EnsemblGenomes-Gn:Cj1540,EnsemblGenomes-Tr:CAL35640,InterPro:IPR024370,UniProtKB/TrEMBL:Q0P885,NCBI_GP:CAL35640.1;Name=CAL35640.1;Note=Original (2000) note: Cj1540%2C probable periplasmic protein%2C len: 269 aa%3B similar to TR:O26579 (EMBL:AE000832) Methanobacterium thermoautotrophicum MTH479 (293 aa)%2Cfasta scores%3B opt: 416 z-score: 475.8 E(): 3.5e-19%2C 37.0%25 identity in 273 aa overlap. No Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1540;product=putative periplasmic protein;protein_id=CAL35640.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1473233	1474000	.	+	.	ID=gene-Cj1541;Name=Cj1541;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1541
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1473233	1474000	.	+	0	ID=cds-CAL35641.1;Parent=gene-Cj1541;Dbxref=EnsemblGenomes-Gn:Cj1541,EnsemblGenomes-Tr:CAL35641,GOA:Q9PMC8,InterPro:IPR005501,InterPro:IPR011330,NCBI_GP:CAL35641.1;Name=CAL35641.1;Note=Original (2000) note: Cj1541%2C unknown%2C len: 255 aa%3B similar to hypothetical proteins e.g. YCSF_BACSU (211 aa)%2Cfasta scores%3B opt: 736 z-score: 875.7 E(): 0%2C 59.9%25 identity in 177 aa overlap%2C and to LAMB_EMENI Aspergillus nidulans lactam utilization protein LAMB (262 aa)%2C fasta scores%3B opt: 405 z-score: 485.4 E(): 1e-19%2C 44.9%25 identity in 127 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03746 LamB/YcsF family identified within CDS. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF03746;locus_tag=Cj1541;product=conserved hypothetical protein Cj1541;protein_id=CAL35641.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1473239	1473964	.	+	.	ID=id-Cj1541;Note=HMMPfam hit to PF03746%2C LamB/YcsF family%2C score 8.3e-172;gbkey=misc_feature;inference=protein motif:Pfam:PF03746;locus_tag=Cj1541
gi|15791399|ref|NC_002163.1|	EMBL	gene	1474010	1474750	.	+	.	ID=gene-Cj1542;Name=Cj1542;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1542
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1474010	1474750	.	+	0	ID=cds-CAL35642.1;Parent=gene-Cj1542;Dbxref=EnsemblGenomes-Gn:Cj1542,EnsemblGenomes-Tr:CAL35642,GOA:Q0P883,InterPro:IPR003833,InterPro:IPR010016,InterPro:IPR024946,InterPro:IPR029000,UniProtKB/TrEMBL:Q0P883,NCBI_GP:CAL35642.1;Name=CAL35642.1;Note=Original (2000) note: Cj1542%2C unknown%2C len: 246 aa%3B similar to hypothetical proteins e.g. YCSJ_BACSU (578 aa)%2Cfasta scores%3B opt: 569 z-score: 690.1 E(): 4.1e-31%2C 41.8%25 identity in 237 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02682 Allophanate hydrolase subunit 1 identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Also%2Csimilarity to Bacillus subtilis kinase a inhibitor (sporulation inhibitor kipi) (PMID:9334321). Functional classification - Degradation - Carbon compounds%3B~PMID:9334321;gbkey=CDS;inference=protein motif:Pfam:PF02682;locus_tag=Cj1542;product=putative allophanate hydrolase subunit 1;protein_id=CAL35642.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1474013	1474633	.	+	.	ID=id-Cj1542;Note=HMMPfam hit to PF02682%2C Allophanate hydrolase subunit%2C score 3e-62;gbkey=misc_feature;inference=protein motif:Pfam:PF02682;locus_tag=Cj1542
gi|15791399|ref|NC_002163.1|	EMBL	gene	1474731	1475696	.	+	.	ID=gene-Cj1543;Name=Cj1543;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1543
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1474731	1475696	.	+	0	ID=cds-CAL35643.1;Parent=gene-Cj1543;Dbxref=EnsemblGenomes-Gn:Cj1543,EnsemblGenomes-Tr:CAL35643,GOA:Q0P882,InterPro:IPR003778,UniProtKB/TrEMBL:Q0P882,NCBI_GP:CAL35643.1;Name=CAL35643.1;Note=Original (2000) note: Cj1543%2C unknown%2C len: 321 aa%3B similar to hypothetical proteins e.g. YBGK_ECOLI (310 aa)%2Cfasta scores%3B opt: 553 z-score: 652.4 E(): 5.1e-29%2C 32.7%25 identity in 312 aa overlap. Also similar to part of DUR1_YEAST urea amidolyase [includes: urea carboxylase%3B allophanate hydrolase] (1835 aa)%2C fasta scores%3B opt: 307 z-score: 353.8 E(): 2.2e-12%2C 28.5%25 identity in 333 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF02626 Allophanate hydrolase subunit 2 identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification - Degradation - Carbon compounds;gbkey=CDS;inference=protein motif:Pfam:PF02626;locus_tag=Cj1543;product=putative allophanate hydrolase subunit 2;protein_id=CAL35643.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1474800	1475645	.	+	.	ID=id-Cj1543;Note=HMMPfam hit to PF02626%2C Allophanate hydrolase subunit%2C score 9.7e-72;gbkey=misc_feature;inference=protein motif:Pfam:PF02626;locus_tag=Cj1543
gi|15791399|ref|NC_002163.1|	EMBL	gene	1475693	1476589	.	-	.	ID=gene-Cj1544c;Name=Cj1544c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1544c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1475693	1476589	.	-	0	ID=cds-CAL35644.1;Parent=gene-Cj1544c;Dbxref=EnsemblGenomes-Gn:Cj1544c,EnsemblGenomes-Tr:CAL35644,GOA:Q0P881,InterPro:IPR000620,UniProtKB/TrEMBL:Q0P881,NCBI_GP:CAL35644.1;Name=CAL35644.1;Note=Original (2000) note: Cj1544c%2C probable integral membrane protein%2C len: 298 aa%3B simlar to hypothetical membrane proteins e.g. YYAM_BACSU (305 aa)%2C fasta scores%3B opt: 244 z-score: 300.4 E(): 2.1e-09%2C 22.3%25 identity in 300 aa overlap. No Hp match. Contains Pfam match to entry PF00892 DUF6%2C Integral membrane protein%3B~Updated (2006) note: Ten probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1544c;product=putative integral membrane protein;protein_id=CAL35644.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1475705	1475773	.	-	.	ID=id-Cj1544c;Note=10 probable transmembrane helices predicted for Cj1544c by TMHMM2.0 at aa 7-24%2C 34-56%2C 69-88%2C 98-120%2C133-150%2C 155-177%2C 186-205%2C 220-242%2C 247-269 and 273-295;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1544c;part=1/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1475783	1475851	.	-	.	ID=id-Cj1544c;Note=10 probable transmembrane helices predicted for Cj1544c by TMHMM2.0 at aa 7-24%2C 34-56%2C 69-88%2C 98-120%2C133-150%2C 155-177%2C 186-205%2C 220-242%2C 247-269 and 273-295;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1544c;part=2/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1475864	1475932	.	-	.	ID=id-Cj1544c;Note=10 probable transmembrane helices predicted for Cj1544c by TMHMM2.0 at aa 7-24%2C 34-56%2C 69-88%2C 98-120%2C133-150%2C 155-177%2C 186-205%2C 220-242%2C 247-269 and 273-295;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1544c;part=3/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1475975	1476034	.	-	.	ID=id-Cj1544c;Note=10 probable transmembrane helices predicted for Cj1544c by TMHMM2.0 at aa 7-24%2C 34-56%2C 69-88%2C 98-120%2C133-150%2C 155-177%2C 186-205%2C 220-242%2C 247-269 and 273-295;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1544c;part=4/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1476059	1476127	.	-	.	ID=id-Cj1544c;Note=10 probable transmembrane helices predicted for Cj1544c by TMHMM2.0 at aa 7-24%2C 34-56%2C 69-88%2C 98-120%2C133-150%2C 155-177%2C 186-205%2C 220-242%2C 247-269 and 273-295;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1544c;part=5/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1476140	1476193	.	-	.	ID=id-Cj1544c;Note=10 probable transmembrane helices predicted for Cj1544c by TMHMM2.0 at aa 7-24%2C 34-56%2C 69-88%2C 98-120%2C133-150%2C 155-177%2C 186-205%2C 220-242%2C 247-269 and 273-295;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1544c;part=6/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1476230	1476298	.	-	.	ID=id-Cj1544c;Note=10 probable transmembrane helices predicted for Cj1544c by TMHMM2.0 at aa 7-24%2C 34-56%2C 69-88%2C 98-120%2C133-150%2C 155-177%2C 186-205%2C 220-242%2C 247-269 and 273-295;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1544c;part=7/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1476326	1476385	.	-	.	ID=id-Cj1544c;Note=10 probable transmembrane helices predicted for Cj1544c by TMHMM2.0 at aa 7-24%2C 34-56%2C 69-88%2C 98-120%2C133-150%2C 155-177%2C 186-205%2C 220-242%2C 247-269 and 273-295;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1544c;part=8/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1476422	1476490	.	-	.	ID=id-Cj1544c;Note=10 probable transmembrane helices predicted for Cj1544c by TMHMM2.0 at aa 7-24%2C 34-56%2C 69-88%2C 98-120%2C133-150%2C 155-177%2C 186-205%2C 220-242%2C 247-269 and 273-295;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1544c;part=9/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1476518	1476571	.	-	.	ID=id-Cj1544c;Note=10 probable transmembrane helices predicted for Cj1544c by TMHMM2.0 at aa 7-24%2C 34-56%2C 69-88%2C 98-120%2C133-150%2C 155-177%2C 186-205%2C 220-242%2C 247-269 and 273-295;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1544c;part=10/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1475711	1476088	.	-	.	ID=id-Cj1544c-2;Note=HMMPfam hit to PF00892%2C Integral membrane protein DUF6%2C score 4.2e-19;gbkey=misc_feature;inference=protein motif:Pfam:PF00892;locus_tag=Cj1544c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1476622	1477200	.	-	.	ID=gene-Cj1545c;Name=Cj1545c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1545c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1476622	1477200	.	-	0	ID=cds-CAL35645.1;Parent=gene-Cj1545c;Dbxref=EnsemblGenomes-Gn:Cj1545c,EnsemblGenomes-Tr:CAL35645,InterPro:IPR003680,InterPro:IPR029039,UniProtKB/TrEMBL:Q0P880,NCBI_GP:CAL35645.1;Name=CAL35645.1;Note=Original (2000) note: Cj1545c%2C unknown%2C len: 192 aa%3B similar to e.g. MDAB_ECOLI modulator of drug activity B (193 aa)%2C fasta scores%3B opt: 777 z-score: 934.0 E(): 0%2C57.8%25 identity in 192 aa overlap. Also weak simlarity to many boxidoreductases e.g. YCAK_ECOLI putative NAD(P)H oxidoreductase YCAK (196 aa)%2C fasta scores%3B opt: 124 z-score: 159.3 E(): 0.15%2C 24.7%25 identity in 174 aa overlap. 65.1%25 identity to HP0630%3B~Updated (2006) note: Pfam domain PF02525 Flavodoxin-like fold identified within CDS. Further support given to product function. Homolog designation kept within product function. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02525;locus_tag=Cj1545c;product=MdaB protein homolog;protein_id=CAL35645.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1476625	1477197	.	-	.	ID=id-Cj1545c;Note=HMMPfam hit to PF02525%2C Flavodoxin-like fold%2C score 2.6e-66;gbkey=misc_feature;inference=protein motif:Pfam:PF02525;locus_tag=Cj1545c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1477300	1477647	.	+	.	ID=gene-Cj1546;Name=Cj1546;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1546
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1477300	1477647	.	+	0	ID=cds-CAL35646.1;Parent=gene-Cj1546;Dbxref=EnsemblGenomes-Gn:Cj1546,EnsemblGenomes-Tr:CAL35646,InterPro:IPR002577,InterPro:IPR011991,UniProtKB/TrEMBL:Q0P879,NCBI_GP:CAL35646.1;Name=CAL35646.1;Note=Original (2000) note: Cj1546%2C unknown%2C len: 115 aa%3B similar to hypothetical proteins e.g. YYBR_BACSU (125 aa)%2Cfasta scores%3B opt: 278 z-score: 389.5 E(): 2.3e-14%2C 42.5%25 identity in 106 aa overlap. No Hp match. Also similar to Cj1556 (43.6%25 identity in 101 aa overlap)%3B~Updated (2006) note: Pfam domain PF01638 Transcriptional regulator identified within CDS. Product modified to more specific family member based on motif match. Putative kept within product function. Functional classification - Broad regulatory functions;gbkey=CDS;inference=protein motif:Pfam:PF01638;locus_tag=Cj1546;product=putative transcriptional regulator;protein_id=CAL35646.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1477360	1477635	.	+	.	ID=id-Cj1546;Note=HMMPfam hit to PF01638%2C Transcriptional regulator%2Cscore 5.1e-29;gbkey=misc_feature;inference=protein motif:Pfam:PF01638;locus_tag=Cj1546
gi|15791399|ref|NC_002163.1|	EMBL	gene	1477635	1478084	.	+	.	ID=gene-Cj1547;Name=Cj1547;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1547
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1477635	1478084	.	+	0	ID=cds-CAL35647.1;Parent=gene-Cj1547;Dbxref=EnsemblGenomes-Gn:Cj1547,EnsemblGenomes-Tr:CAL35647,GOA:Q0P878,InterPro:IPR000566,InterPro:IPR002446,InterPro:IPR011038,InterPro:IPR012674,InterPro:IPR022271,UniProtKB/TrEMBL:Q0P878,NCBI_GP:CAL35647.1;Name=CAL35647.1;Note=Original (2000) note: Cj1547%2C unknown%2C len: 149 aa%3B similar to e.g. BLC_ECOLI outer membrane lipoprotein BLC precursor (177 aa)%2C fasta scores%3B opt: 230 z-score: 307.6 E(): 8.2e-10%2C 27.6%25 identity in 145 aa overlap%2C and APD_MOUSE apolipoprotein D precursor (189 aa)%2C fasta scores%3B opt: 151 z-score: 206.3 E(): 0.00036%2C 30.3%25 identity in 145 aa overlap. No Hp match. Contains PS00213 Lipocalin signature%2C but no N-terminal signal sequence. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Prosite:PS00213;locus_tag=Cj1547;product=Blc protein homolog;protein_id=CAL35647.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1477653	1477694	.	+	.	ID=id-Cj1547;Note=PS00213 Lipocalin signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00213;locus_tag=Cj1547
gi|15791399|ref|NC_002163.1|	EMBL	gene	1478086	1479162	.	-	.	ID=gene-Cj1548c;Name=Cj1548c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1548c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1478086	1479162	.	-	0	ID=cds-CAL35648.1;Parent=gene-Cj1548c;Dbxref=EnsemblGenomes-Gn:Cj1548c,EnsemblGenomes-Tr:CAL35648,GOA:Q0P877,InterPro:IPR002085,InterPro:IPR002328,InterPro:IPR011032,InterPro:IPR013149,InterPro:IPR013154,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P877,NCBI_GP:CAL35648.1;Name=CAL35648.1;Note=Original (2000) note: Cj1548c%2C probable NADP-dependent alcohol dehydrogenase%2C len: 358 aa%3B similar to e.g. ADH_MYCTU NADP-dependent alcohol dehydrogenase (EC 1.1.1.2) (346 aa)%2C fasta scores%3B opt: 997 z-score: 1095.7 E(): 0%2C 43.9%25 identity in 344 aa overlap. Also similar to plant lignin production alcohol dehydrogenases e.g. CAD3_ARATH cinnamyl-alcohol dehydrogenase ELI3-2 (359 aa)%2Cfasta scores%3B opt: 949 z-score: 1043.1 E(): 0%2C 40.9%25 identity in 352 aa overlap. 65.8%25 identity to HP1104. Contains PS00059 Zinc-containing alcohol dehydrogenases signature%2C and Pfam match to entry PF00107 adh_zinc%2CZinc-binding dehydrogenases%3B~Updated (2006) note: Putative kept within product function as acceptable identity score to more than one characterised bacteria. Functional classification - Misc%3B~PMID:1427101;gbkey=CDS;inference=protein motif:Prosite:PS00059;locus_tag=Cj1548c;product=putative NADP-dependent alcohol dehydrogenase;protein_id=CAL35648.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1478098	1479105	.	-	.	ID=id-Cj1548c;Note=HMMPfam hit to PF00107%2C Zinc-binding dehydrogenase%2Cscore 9e-94;gbkey=misc_feature;inference=protein motif:Pfam:PF00107;locus_tag=Cj1548c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1478908	1478952	.	-	.	ID=id-Cj1548c-2;Note=PS00059 Zinc-containing alcohol dehydrogenases signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00059;locus_tag=Cj1548c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1479390	1482485	.	-	.	ID=gene-Cj1549c;Name=hsdR;gbkey=Gene;gene=hsdR;gene_biotype=protein_coding;locus_tag=Cj1549c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1479390	1482485	.	-	0	ID=cds-CAL35649.1;Parent=gene-Cj1549c;Dbxref=EnsemblGenomes-Gn:Cj1549c,EnsemblGenomes-Tr:CAL35649,GOA:Q0P876,InterPro:IPR001650,InterPro:IPR004473,InterPro:IPR006935,InterPro:IPR007409,InterPro:IPR014001,InterPro:IPR021810,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P876,NCBI_GP:CAL35649.1;Name=CAL35649.1;Note=Original (2000) note: Cj1549c%2C probable type I restriction enzyme R protein%2C len: 1031 aa%3B similar to many e.g. T1R1_ECOLI type I restriction enzyme EcoR124II R protein (EC 3.1.21.3) (1033 aa)%2C fasta scores%3B opt: 353 z-score: 372.8 E(): 1.9e-13%2C 23.5%25 identity in 1047 aa overlap. 26.4%25 identity to HP1402%3B~Updated (2006) note: Pfam domains PF04851 Type III restriction enzyme%2C res subunit and PF04313 Type I restriction enzyme R protein N terminal were both identified within CDS. Literature search identified work carried out in Campylobacter jejuni. This CDS is the start of a putative type I locus (genes Cj1549-Cj1553). Some characterisation work within Escherichia coli%2C however%2Cputative kept within product function as identity score was unnacceptable. Functional classification - DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:15699185%2C PMID:9016588;gbkey=CDS;gene=hsdR;inference=protein motif:Pfam:PF04851;locus_tag=Cj1549c;product=putative type I restriction enzyme R protein;protein_id=CAL35649.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1481118	1481681	.	-	.	ID=id-Cj1549c;Note=HMMPfam hit to PF04851%2C Type III restriction enzyme%2C res subunit%2C score 7.8e-10;gbkey=misc_feature;gene=hsdR;inference=protein motif:Pfam:PF04851;locus_tag=Cj1549c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1481880	1482473	.	-	.	ID=id-Cj1549c-2;Note=HMMPfam hit to PF04313%2C Type I restriction enzyme R protein N termin%2C score 6.1e-73;gbkey=misc_feature;gene=hsdR;inference=protein motif:Pfam:PF04313;locus_tag=Cj1549c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1482488	1484254	.	-	.	ID=gene-Cj1550c;Name=rloH;gbkey=Gene;gene=rloH;gene_biotype=protein_coding;locus_tag=Cj1550c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1482488	1484254	.	-	0	ID=cds-CAL35650.1;Parent=gene-Cj1550c;Dbxref=EnsemblGenomes-Gn:Cj1550c,EnsemblGenomes-Tr:CAL35650,GOA:Q0P875,InterPro:IPR003439,InterPro:IPR003959,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P875,NCBI_GP:CAL35650.1;Name=CAL35650.1;Note=Original (2000) note: Cj1550c%2C probable ATP/GTP-binding protein%2C len: 588 aa%3B some similarity to hypothetical proteins e.g. TR:O50349 Lactobacillus helveticus plasmid plh1 hypothetical protein (495 aa)%2Cfasta scores%3B opt: 209 z-score: 231.6 E(): 1.4e-05%2C 22.6%25 identity in 412 aa overlap. No Hp match. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Prosite domain PS50893 ABC_TRANSPORTER_2%2C ATP-binding cassette%2C ABC transporter-type domain profile identified within CDS. Literature search identified work carried out within Helicobacter pylori and Campylobacter jejuni. This CDS is within a putative type I locus (genes Cj1549-Cj1553). Putative kept within product function. Functional classification - Conserved hypothetical proteins%3B~PMID:15699185;gbkey=CDS;gene=rloH;inference=protein motif:Prosite:PS50893;locus_tag=Cj1550c;product=putative ATP/GTP-binding protein;protein_id=CAL35650.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1484132	1484155	.	-	.	ID=id-Cj1550c;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=rloH;inference=protein motif:Prosite:PS00017;locus_tag=Cj1550c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1484265	1485407	.	-	.	ID=gene-Cj1551c;Name=hsdS;gbkey=Gene;gene=hsdS;gene_biotype=protein_coding;locus_tag=Cj1551c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1484265	1485407	.	-	0	ID=cds-CAL35651.1;Parent=gene-Cj1551c;Dbxref=EnsemblGenomes-Gn:Cj1551c,EnsemblGenomes-Tr:CAL35651,GOA:Q0P874,InterPro:IPR000055,UniProtKB/TrEMBL:Q0P874,NCBI_GP:CAL35651.1;Name=CAL35651.1;Note=Original (2000) note: Cj1551c%2C probable type I restriction enzyme S protein%2C len: 588 aa%3B simlar to many e.g. T1S_SALTY type I restriction enzymE StySJI specificity protein (S protein) (469 aa)%2C fasta scores%3B opt: 173 z-score: 199.9 E(): 0.00082%2C 25.6%25 identity in 301 aa overlap. 24.1%25 identity to HP0462%3B~Updated (2006) note: Literature search identified work carried out within Helicobacter pylori and Campylobacter jejuni. This CDS is within a putative type I locus (genes Cj1549-Cj1553). Some characterisation work within Escherichia coli%2C however%2C putative kept within product function as identity scores were unnacceptable. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:15699185%2C PMID:3025838%2C PMID:1453962;gbkey=CDS;gene=hsdS;locus_tag=Cj1551c;product=putative type I restriction enzyme S protein;protein_id=CAL35651.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1484373	1484861	.	-	.	ID=id-Cj1551c;Note=HMMPfam hit to PF01420%2C Type I restriction modification DNA speci%2C score 2.5e-06;gbkey=misc_feature;gene=hsdS;inference=protein motif:Pfam:PF01420;locus_tag=Cj1551c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1484943	1485398	.	-	.	ID=id-Cj1551c-2;Note=HMMPfam hit to PF01420%2C Type I restriction modification DNA speci%2C score 1.3e-31;gbkey=misc_feature;gene=hsdS;inference=protein motif:Pfam:PF01420;locus_tag=Cj1551c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1485626	1487092	.	-	.	ID=gene-Cj1552c;Name=mloB;gbkey=Gene;gene=mloB;gene_biotype=protein_coding;locus_tag=Cj1552c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1485626	1487092	.	-	0	ID=cds-CAL35652.1;Parent=gene-Cj1552c;Dbxref=EnsemblGenomes-Gn:Cj1552c,EnsemblGenomes-Tr:CAL35652,GOA:Q0P873,InterPro:IPR007421,InterPro:IPR025831,UniProtKB/TrEMBL:Q0P873,NCBI_GP:CAL35652.1;Name=CAL35652.1;Note=Original (2000) note: Cj1552c%2C unknown%2C len: 488 aa%3B no Hp match%3B~Updated (2006) note: Pfam domain PF04326 Divergent AAA domain identified within CDS. Conserved added to product function. Literature search identified work carried out within Helicobacter pylori and Campylobacter jejuni. This CDS is within a putative type I locus (genes Cj1549-Cj1553). Functional classification - Unknown%3B~PMID:15699185;gbkey=CDS;gene=mloB;inference=protein motif:Pfam:PF04326;locus_tag=Cj1552c;product=conserved hypothetical protein Cj1552c;protein_id=CAL35652.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1486658	1486963	.	-	.	ID=id-Cj1552c;Note=HMMPfam hit to PF04326%2C Divergent AAA domain%2C score 2.9e-18;gbkey=misc_feature;gene=mloB;inference=protein motif:Pfam:PF04326;locus_tag=Cj1552c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1487089	1488591	.	-	.	ID=gene-Cj1553c;Name=hsdM;gbkey=Gene;gene=hsdM;gene_biotype=protein_coding;locus_tag=Cj1553c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1487089	1488591	.	-	0	ID=cds-CAL35653.1;Parent=gene-Cj1553c;Dbxref=EnsemblGenomes-Gn:Cj1553c,EnsemblGenomes-Tr:CAL35653,GOA:Q0P872,InterPro:IPR002052,InterPro:IPR002296,InterPro:IPR003356,InterPro:IPR022749,InterPro:IPR029063,UniProtKB/TrEMBL:Q0P872,NCBI_GP:CAL35653.1;Name=CAL35653.1;Note=Original (2000) note: Cj1553c%2C probable type I restriction enzyme M protein%2C len: 500 aa%3B simlar to many e.g. T1M1_ECOLI type I restriction enzyme EcoR124II M protein (EC 2.1.1.72) (520 aa)%2C fasta scores%3B opt: 447 z-score: 527.4 E(): 4.7e-22%2C 25.9%25 identity in 521 aa overlap. 30.2%25 identity to HP0850. Contains PS00092 N-6 Adenine-specific DNA methylases signature%3B~Updated (2006) note: Pfam domains PF02384 N-6 DNA Methylase and PF02506 Type I restriction modification system were identified within CDS. Further support given to product function. Literature search identified work carried out within Helicobacter pylori and Campylobacter jejuni. This CDS is within a putative type I locus (genes Cj1549-Cj1553). Some characterisation work within Escherichia coli%2C however%2C putative kept within product function as identity scores were unnacceptable. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:15699185%2C PMID:8145241%2C PMID:9016588;gbkey=CDS;gene=hsdM;inference=protein motif:Prosite:PS00092;locus_tag=Cj1553c;product=putative type I restriction enzyme M protein;protein_id=CAL35653.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1487245	1487748	.	-	.	ID=id-Cj1553c;Note=HMMPfam hit to PF02384%2C N-6 DNA Methylase%2C score 5e-66;gbkey=misc_feature;gene=hsdM;inference=protein motif:Pfam:PF02384;locus_tag=Cj1553c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1487755	1487775	.	-	.	ID=id-Cj1553c-2;Note=PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=misc_feature;gene=hsdM;inference=protein motif:Prosite:PS00092;locus_tag=Cj1553c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1487899	1488585	.	-	.	ID=id-Cj1553c-3;Note=HMMPfam hit to PF02506%2C Type I restriction modification system%2C M%2C score 4.6e-94;gbkey=misc_feature;gene=hsdM;inference=protein motif:Pfam:PF02506;locus_tag=Cj1553c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1488961	1489596	.	-	.	ID=gene-Cj1555c;Name=Cj1555c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1555c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1488961	1489596	.	-	0	ID=cds-CAL35654.1;Parent=gene-Cj1555c;Dbxref=EnsemblGenomes-Gn:Cj1555c,EnsemblGenomes-Tr:CAL35654,InterPro:IPR016040,UniProtKB/TrEMBL:Q0P871,NCBI_GP:CAL35654.1;Name=CAL35654.1;Note=Original (2000) note: Cj1555c%2C unknown%2C len: 211 aa%3B similar to TR:P71037 Bacillus subtilis YWNB (213 aa)%2Cfasta scores%3B opt: 519 z-score: 635.5 E(): 4.5e-28%2C 42.9%25 identity in 212 aa overlap. No Hp match. Functional classification - Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1555c;product=hypothetical protein Cj1555c;protein_id=CAL35654.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1489789	1490121	.	+	.	ID=gene-Cj1556;Name=Cj1556;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1556
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1489789	1490121	.	+	0	ID=cds-CAL35655.1;Parent=gene-Cj1556;Dbxref=EnsemblGenomes-Gn:Cj1556,EnsemblGenomes-Tr:CAL35655,InterPro:IPR002577,InterPro:IPR011991,UniProtKB/TrEMBL:Q0P870,NCBI_GP:CAL35655.1;Name=CAL35655.1;Note=Original (2000) note: Cj1556%2C unknown%2C len: 110 aa%3B similar to hypothetical proteins e.g. YYBR_BACSU (125 aa)%2Cfasta scores%3B opt: 307 z-score: 402.3 E(): 4.3e-15%2C 43.7%25 identity in 103 aa overlap. No Hp match. Also similar to Cj1546 (43.6%25 identity in 101 aa overlap)%3B~Updated (2006) note: Pfam domain PF01638 Transcriptional regulator identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification - Broad regulatory functions;gbkey=CDS;inference=protein motif:Pfam:PF01638;locus_tag=Cj1556;product=putative transcriptional regulator;protein_id=CAL35655.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1489834	1490118	.	+	.	ID=id-Cj1556;Note=HMMPfam hit to PF01638%2C Transcriptional regulator%2Cscore 1.2e-34;gbkey=misc_feature;inference=protein motif:Pfam:PF01638;locus_tag=Cj1556
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	1490120	1490161	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1490120..1490161;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	1490206	1490379	.	+	.	ID=gene-Cj1558;Name=Cj1558;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1558
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1490206	1490379	.	+	0	ID=cds-CAL35656.1;Parent=gene-Cj1558;Dbxref=EnsemblGenomes-Gn:Cj1558,EnsemblGenomes-Tr:CAL35656,UniProtKB/TrEMBL:Q0P869,NCBI_GP:CAL35656.1;Name=CAL35656.1;Note=Original (2000) note: Cj1558%2C probable membrane protein%2C len: 57 aa%3B no Hp match. May constitute the 5' end of Cj1560%2C which may be a pseudogene%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1558;product=putative membrane protein;protein_id=CAL35656.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1490233	1490301	.	+	.	ID=id-Cj1558;Note=1 probable transmembrane helix predicted for Cj1558 by TMHMM2.0 at aa 10-32;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1558
gi|15791399|ref|NC_002163.1|	EMBL	gene	1490328	1491152	.	+	.	ID=gene-Cj1560;Name=Cj1560;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1560;partial=true;start_range=.,1490328
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1490328	1491152	.	+	0	ID=cds-CAL35657.1;Parent=gene-Cj1560;Dbxref=EnsemblGenomes-Gn:Cj1560,EnsemblGenomes-Tr:CAL35657,InterPro:IPR005524,UniProtKB/TrEMBL:Q0P868,NCBI_GP:CAL35657.1;Name=CAL35657.1;Note=Original (2000) note: Cj1560%2C probable membrane protein%2C len: 274 aa%3B simlar to hypothetical proteins e.g. Y584_METJA MJ0584 (365 aa)%2C fasta scores%3B opt: 213 z-score: 246.7 E(): 2.1e-06%2C 23.5%25 identity in 294 aa overlap. No Hp match. Note that the similarities continue upstream of the first possible start site (at aa 62)%2C and that this gene may therfore be a pseudogene%2C with Cj1558 representing the 5' end%3B~Updated (2006) note: Pfam domain PF03773 Predicted permease identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Also%2C seven probable transmembrane helix predicted by TMHMM2.0. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1560;partial=true;product=putative permease;protein_id=CAL35657.1;start_range=.,1490328;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1490328	1491146	.	+	.	ID=id-Cj1560;Note=HMMPfam hit to PF03773%2C Predicted permease%2C score 1.8e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF03773;locus_tag=Cj1560
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1490370	1490438	.	+	.	ID=id-Cj1560-2;Note=7 probable transmembrane helices predicted for Cj1560 by TMHMM2.0 at aa 15-37%2C 44-66%2C 71-90%2C 157-179%2C189-206%2C 213-235 and 250-272;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1560;part=1/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1490457	1490525	.	+	.	ID=id-Cj1560-2;Note=7 probable transmembrane helices predicted for Cj1560 by TMHMM2.0 at aa 15-37%2C 44-66%2C 71-90%2C 157-179%2C189-206%2C 213-235 and 250-272;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1560;part=2/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1490538	1490597	.	+	.	ID=id-Cj1560-2;Note=7 probable transmembrane helices predicted for Cj1560 by TMHMM2.0 at aa 15-37%2C 44-66%2C 71-90%2C 157-179%2C189-206%2C 213-235 and 250-272;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1560;part=3/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1490796	1490864	.	+	.	ID=id-Cj1560-2;Note=7 probable transmembrane helices predicted for Cj1560 by TMHMM2.0 at aa 15-37%2C 44-66%2C 71-90%2C 157-179%2C189-206%2C 213-235 and 250-272;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1560;part=4/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1490892	1490945	.	+	.	ID=id-Cj1560-2;Note=7 probable transmembrane helices predicted for Cj1560 by TMHMM2.0 at aa 15-37%2C 44-66%2C 71-90%2C 157-179%2C189-206%2C 213-235 and 250-272;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1560;part=5/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1490964	1491032	.	+	.	ID=id-Cj1560-2;Note=7 probable transmembrane helices predicted for Cj1560 by TMHMM2.0 at aa 15-37%2C 44-66%2C 71-90%2C 157-179%2C189-206%2C 213-235 and 250-272;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1560;part=6/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1491075	1491143	.	+	.	ID=id-Cj1560-2;Note=7 probable transmembrane helices predicted for Cj1560 by TMHMM2.0 at aa 15-37%2C 44-66%2C 71-90%2C 157-179%2C189-206%2C 213-235 and 250-272;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1560;part=7/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1491162	1491341	.	+	.	ID=gene-Cj1561;Name=Cj1561;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1561
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1491162	1491341	.	+	0	ID=cds-CAL35658.1;Parent=gene-Cj1561;Dbxref=EnsemblGenomes-Gn:Cj1561,EnsemblGenomes-Tr:CAL35658,GOA:Q0P867,InterPro:IPR001845,InterPro:IPR011991,UniProtKB/TrEMBL:Q0P867,NCBI_GP:CAL35658.1;Name=CAL35658.1;Note=Original (2000) note: Cj1561%2C probable transcriptional regulator%2C len: 59 aa%3B similar to N-terminus of e.g. ARR1_ECOLI arsenical resistance operon repressor (117 aa)%2C fasta scores%3B opt: 142 z-score: 236.5 E(): 7.4e-06%2C 38.2%25 identity in 55 aa overlap%2C and CADC_LISMO cadmium efflux system accessory protein (119 aa)%2C fasta scores%3B opt: 134 z-score: 224.1 E(): 3.7e-05%2C42.0%25 identity in 50 aa overlap. No Hp match. Contains helix-turn-helix motif at aa 30-51 (Score 1478%2C +4.22 SD)%3B~Updated (2006) note: Similar to more than one characterised bacteria. Putative designation kept within product function. Functional classification - Broad regulatory functions;gbkey=CDS;locus_tag=Cj1561;product=putative transcriptional regulator;protein_id=CAL35658.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1491332	1491484	.	+	.	ID=gene-Cj1562;Name=Cj1562;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1562
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1491332	1491484	.	+	0	ID=cds-CAL35659.1;Parent=gene-Cj1562;Dbxref=EnsemblGenomes-Gn:Cj1562,EnsemblGenomes-Tr:CAL35659,UniProtKB/TrEMBL:Q0P866,NCBI_GP:CAL35659.1;Name=CAL35659.1;Note=Original (2000) note: Cj1562%2C unknown%2C len: 50 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj1562;product=hypothetical protein Cj1562;protein_id=CAL35659.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1491492	1491923	.	-	.	ID=gene-Cj1563c;Name=Cj1563c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1563c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1491492	1491923	.	-	0	ID=cds-CAL35660.1;Parent=gene-Cj1563c;Dbxref=EnsemblGenomes-Gn:Cj1563c,EnsemblGenomes-Tr:CAL35660,GOA:Q0P865,InterPro:IPR000551,InterPro:IPR009061,UniProtKB/TrEMBL:Q0P865,NCBI_GP:CAL35660.1;Name=CAL35660.1;Note=Original (2000) note: Cj1563c%2C probable transcriptional regulator%2C len: 143 aa%3B similar to members of the MerR family e.g. Y186_HAEIN hypothetical transcriptional regulator HI0186 (135 aa)%2C fasta scores%3B opt: 241 z-score: 290.6 E(): 7.3e-09%2C 31.9%25 identity in 119 aa overlap%2C and BLTR_BACSU multidrug-efflux transporter 2 regulator (273 aa)%2C fasta scores%3B opt: 149 z-score: 182.1 E(): 0.008%2C 24.4%25 identity in 127 aa overlap. No Hp match. Contains helix-turn-helix motif at aa 4-25 (Score 1172%2C +3.18 SD)%3B~Updated (2006) note: Pfam domain PF00376 MerR family regulatory protein identified within CDS. Further support given to product function. No specific characterisation has been carried out with acceptable identity score%2C so putative kept within product function. Functional classification - Broad regulatory functions;gbkey=CDS;inference=protein motif:Pfam:PF00376;locus_tag=Cj1563c;product=putative transcriptional regulator;protein_id=CAL35660.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1491801	1491914	.	-	.	ID=id-Cj1563c;Note=HMMPfam hit to PF00376%2C MerR family regulatory protein%2C score 1.4e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF00376;locus_tag=Cj1563c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1492003	1493991	.	+	.	ID=gene-Cj1564;Name=Cj1564;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1564
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1492003	1493991	.	+	0	ID=cds-CAL35661.1;Parent=gene-Cj1564;Dbxref=EnsemblGenomes-Gn:Cj1564,EnsemblGenomes-Tr:CAL35661,GOA:Q0P864,InterPro:IPR004010,InterPro:IPR004089,InterPro:IPR029151,UniProtKB/TrEMBL:Q0P864,NCBI_GP:CAL35661.1;Name=CAL35661.1;Note=Original (2000) note: Cj1564%2C probable methyl-accepting chemotaxis signal transduction protein%2Clen: 662 aa%3B similar to many e.g. TLPC_BACSU methyl-accepting chemotaxis protein TLPC (573 aa)%2C fasta scores%3B opt: 351 z-score: 363.6 E(): 6.2e-13%2C 26.2%25 identity in 553 aa overlap. No Hp ortholog. C-terminus contains repeat1%2C and is identical to the other repeat 1-containing genes Cj0262c and Cj0144. Contains N-terminal signal sequence and transmembrane anchor around aa 300. Also contains Pfam match to entry PF00015 MCPsignal%2CMethyl-accepting chemotaxis protein (MCP) signaling domain%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Characterisation work carried out within Bacillus subtilis%2C however%2C identity scores were marginal. Putative kept within product function. Functional classification - Chemotaxis and mobility%3B~PMID:6213619%2C PMID:7921238;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1564;product=putative methyl-accepting chemotaxis signal transduction protein;protein_id=CAL35661.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1492060	1492128	.	+	.	ID=id-Cj1564;Note=2 probable transmembrane helices predicted for Cj1564 by TMHMM2.0 at aa 20-42 and 291-313;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1564;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1492873	1492941	.	+	.	ID=id-Cj1564;Note=2 probable transmembrane helices predicted for Cj1564 by TMHMM2.0 at aa 20-42 and 291-313;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1564;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1492489	1492716	.	+	.	ID=id-Cj1564-2;Note=HMMPfam hit to PF02743%2C Cache domain%2C score 7e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF02743;locus_tag=Cj1564
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1493491	1493985	.	+	.	ID=id-Cj1564-3;Note=HMMPfam hit to PF00015%2C Methyl-accepting chemotaxis protein (MCP) s%2C score 6.4e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF00015;locus_tag=Cj1564
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1492914	1493991	.	+	.	ID=id-Cj1564-4;Note=repeat 1: identical to 147606..148684 and complement(238817..239964) (approximate numbers);gbkey=repeat_region;locus_tag=Cj1564
gi|15791399|ref|NC_002163.1|	EMBL	gene	1494034	1496400	.	-	.	ID=gene-Cj1565c;Name=pflA;gbkey=Gene;gene=pflA;gene_biotype=protein_coding;locus_tag=Cj1565c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1494034	1496400	.	-	0	ID=cds-CAL35662.1;Parent=gene-Cj1565c;Dbxref=EnsemblGenomes-Gn:Cj1565c,EnsemblGenomes-Tr:CAL35662,InterPro:IPR011990,UniProtKB/TrEMBL:Q0P863,NCBI_GP:CAL35662.1;Name=CAL35662.1;Note=Original (2000) note: Cj1565c%2C pflA%2C required for flagellar function%2C len: 788 aa%3B identical to TR:Q46092 (EMBL:U09019) C. jejuni pflA (788 aa). 22.7%25 identity to HP1274. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF07719 Tetratricopeptide repeat identified within CDS. Similar to previously characterised PflA protein in Campylobacter jejuni. Paper identified linking protein to glycoprotein. Functional classification - Surface structures%3B~PMID:7715450%2C PMID:12186869;gbkey=CDS;gene=pflA;inference=protein motif:Pfam:PF07719;locus_tag=Cj1565c;product=paralysed flagellum protein;protein_id=CAL35662.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1495318	1495419	.	-	.	ID=id-Cj1565c;Note=HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 0.012;gbkey=misc_feature;gene=pflA;inference=protein motif:Pfam:PF07719;locus_tag=Cj1565c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1496422	1497810	.	-	.	ID=gene-Cj1566c;Name=nuoN;gbkey=Gene;gene=nuoN;gene_biotype=protein_coding;locus_tag=Cj1566c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1496422	1497810	.	-	0	ID=cds-CAL35663.1;Parent=gene-Cj1566c;Dbxref=EnsemblGenomes-Gn:Cj1566c,EnsemblGenomes-Tr:CAL35663,GOA:Q0P862,InterPro:IPR001750,InterPro:IPR010096,UniProtKB/TrEMBL:Q0P862,NCBI_GP:CAL35663.1;Name=CAL35663.1;Note=Original (2000) note: Cj1566c%2C nuoN%2C probable NADH dehydrogenase I chain N%2C len: 462 aa%3B similar to many e.g. NUON_ECOLI NADH dehydrogenase I chain N (EC 1.6.5.3) (425 aa)%2C fasta scores%3B opt: 592 z-score: 716.4 E(): 1.4e-32%2C32.3%25 identity in 402 aa overlap. 35.3%25 identity to HP1273. Contains Pfam match to entry PF00361 oxidored_q1%2CNADH-Ubiquinone/plastoquinone (complex I)%2C various chains%3B~Updated (2006) note: Characterised operon within Escherichia coli. Appropriate motifs also present. Identity score was acceptable%2C so putative not added to product function. Twelve probable transmembrane helices predicted by TMHMM2.0. Functional classification - Energy metabolism - Respiration - Aerobic%3B~PMID:7565112%2C PMID:7730262%2C PMID:15368583%2CPMID:12718520;gbkey=CDS;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;product=NADH dehydrogenase I chain N;protein_id=CAL35663.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1496428	1496496	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1496554	1496622	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1496650	1496718	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1496776	1496844	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1496947	1497015	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1497034	1497102	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1497130	1497198	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1497259	1497327	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1497412	1497480	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1497517	1497576	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1497619	1497687	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1497706	1497774	.	-	.	ID=id-Cj1566c;Note=12 probable transmembrane helices predicted for Cj1566c by TMHMM2.0 at aa 13-35%2C 42-64%2C 79-98%2C 111-133%2C162-184%2C 205-227%2C 237-259%2C 266-288%2C 323-345%2C 365-387%2C397-419 and 439-461;gbkey=misc_feature;gene=nuoN;inference=protein motif:TMHMM:2.0;locus_tag=Cj1566c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1496578	1497438	.	-	.	ID=id-Cj1566c-2;Note=HMMPfam hit to PF00361%2CNADH-Ubiquinone/plastoquinone (complex I)%2C score 2e-50;gbkey=misc_feature;gene=nuoN;inference=protein motif:Pfam:PF00361;locus_tag=Cj1566c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1496878	1496910	.	-	.	ID=id-Cj1566c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=nuoN;inference=protein motif:Prosite:PS00013;locus_tag=Cj1566c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1497800	1499287	.	-	.	ID=gene-Cj1567c;Name=nuoM;gbkey=Gene;gene=nuoM;gene_biotype=protein_coding;locus_tag=Cj1567c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1497800	1499287	.	-	0	ID=cds-CAL35664.1;Parent=gene-Cj1567c;Dbxref=EnsemblGenomes-Gn:Cj1567c,EnsemblGenomes-Tr:CAL35664,GOA:Q0P861,InterPro:IPR001750,InterPro:IPR003918,InterPro:IPR010227,UniProtKB/TrEMBL:Q0P861,NCBI_GP:CAL35664.1;Name=CAL35664.1;Note=Original (2000) note: Cj1567c%2C nuoM%2C probable NADH dehydrogenase I chain M%2C len: 495 aa%3B similar to many e.g. NU4M_CHOCR NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (492 aa)%2C fasta scores%3B opt: 1055 z-score: 1213.7 E(): 0%2C 36.4%25 identity in 495 aa overlap%2C and NUOM_ECOLI NADH dehydrogenase I chain M(EC 1.6.5.3) (509 aa)%2C blastp scores%3B E%3D 1.5e-58%2C 32%25 identity in 419 aa overlap. 40.1%25 identity to HP1272. Contains Pfam match to entry PF00361 oxidored_q1%2C NADH-Ubiquinone/plastoquinone (complex I)%2Cvarious chains%3B~Updated (2006) note: Characterised operon within Escherichia coli. Appropriate motifs present. Identity score was acceptable%2C so putative not added to product function. Fourteen probable transmembrane helices predicted by TMHMM2.0. Functional classification - Energy metabolism - Respiration - Aerobic%3B~PMID:7565112%2C PMID:7730262%2C PMID:15368583%2CPMID:12923180;gbkey=CDS;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;product=NADH dehydrogenase I chain M;protein_id=CAL35664.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1497911	1497979	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=1/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1498040	1498108	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=2/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1498145	1498213	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=3/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1498271	1498339	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=4/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1498352	1498420	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=5/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1498439	1498507	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=6/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1498535	1498603	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=7/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1498622	1498690	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=8/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1498778	1498846	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=9/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1498865	1498933	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=10/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1498943	1498996	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=11/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1499015	1499083	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=12/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1499141	1499209	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=13/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1499228	1499278	.	-	.	ID=id-Cj1567c;Note=14 probable transmembrane helices predicted for Cj1567c by TMHMM2.0 at aa 4-20%2C 27-49%2C 69-91%2C 98-115%2C119-141%2C 148-170%2C 200-222%2C 229-251%2C 261-283%2C 290-312%2C317-339%2C 359-381%2C 394-416 and 437-459;gbkey=misc_feature;gene=nuoM;inference=protein motif:TMHMM:2.0;locus_tag=Cj1567c;part=14/14
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1498076	1498942	.	-	.	ID=id-Cj1567c-2;Note=HMMPfam hit to PF00361%2CNADH-Ubiquinone/plastoquinone (complex I)%2C score 5.3e-59;gbkey=misc_feature;gene=nuoM;inference=protein motif:Pfam:PF00361;locus_tag=Cj1567c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1499289	1501079	.	-	.	ID=gene-Cj1568c;Name=nuoL;gbkey=Gene;gene=nuoL;gene_biotype=protein_coding;locus_tag=Cj1568c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1499289	1501079	.	-	0	ID=cds-CAL35665.1;Parent=gene-Cj1568c;Dbxref=EnsemblGenomes-Gn:Cj1568c,EnsemblGenomes-Tr:CAL35665,GOA:Q9PMA7,InterPro:IPR001516,InterPro:IPR001750,InterPro:IPR003945,InterPro:IPR018393,NCBI_GP:CAL35665.1;Name=CAL35665.1;Note=Original (2000) note: Cj1568c%2C nuoL%2C probable NADH dehydrogenase I chain L%2C len: 596 aa%3B similar to many e.g. NUOL_ECOLI NADH dehydrogenasE I chain L (EC 1.6.5.3) (613 aa)%2C fasta scores%3B opt: 1189 z-score: 1395.8 E(): 0%2C36.7%25 identity in 615 aa overlap. 55.1%25 identity to HP1271. Contains Pfam match to entry PF00361 oxidored_q1%2CNADH-Ubiquinone/plastoquinone (complex I)%2C various chains%2Cand Pfam match to entry PF00662 oxidored_q1_N%2CNADH-Ubiquinone oxidoreductase (complex I)%2C chain 5 N-terminus%3B~Updated (2006) note: Characterised operon within Escherichia coli. Appropriate motifs also present. Identity score was acceptable%2C so putative not added to product function. Sixteen probable transmembrane helices predicted by TMHMM2.0. Functional classification - Energy metabolism - Respiration - Aerobic%3B~PMID:7565112%2C PMID:7730262%2C PMID:15368583%2CPMID:12923180;gbkey=CDS;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;product=NADH dehydrogenase I chain L;protein_id=CAL35665.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1499295	1499363	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=1/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1499580	1499648	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=2/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1499691	1499759	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=3/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1499820	1499888	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=4/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1499925	1499993	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=5/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1500054	1500113	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=6/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1500123	1500191	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=7/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1500210	1500278	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=8/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1500306	1500374	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=9/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1500408	1500476	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=10/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1500534	1500593	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=11/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1500630	1500698	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=12/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1500708	1500767	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=13/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1500786	1500854	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=14/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1500924	1500992	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=15/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501011	1501070	.	-	.	ID=id-Cj1568c;Note=16 probable transmembrane helices predicted for Cj1568c by TMHMM2.0 at aa 4-23%2C 30-52%2C 76-98%2C 105-124%2C128-150%2C 163-182%2C 202-224%2C 236-258%2C 268-290%2C 297-319%2C323-342%2C 363-385%2C 398-420%2C 441-463%2C 478-500 and 573-595;gbkey=misc_feature;gene=nuoL;inference=protein motif:TMHMM:2.0;locus_tag=Cj1568c;part=16/16
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1499295	1499834	.	-	.	ID=id-Cj1568c-2;Note=HMMPfam hit to PF06455%2C NADH dehydrogenase subunit 5 C-terminus%2C score 0.00052;gbkey=misc_feature;gene=nuoL;inference=protein motif:Pfam:PF06455;locus_tag=Cj1568c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1499844	1500707	.	-	.	ID=id-Cj1568c-3;Note=HMMPfam hit to PF00361%2CNADH-Ubiquinone/plastoquinone (complex%2C score 1e-89;gbkey=misc_feature;gene=nuoL;inference=protein motif:Pfam:PF00361;locus_tag=Cj1568c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1500738	1500911	.	-	.	ID=id-Cj1568c-4;Note=HMMPfam hit to PF00662%2C NADH-Ubiquinone oxidoreductase (complex%2C score 1.4e-18;gbkey=misc_feature;gene=nuoL;inference=protein motif:Pfam:PF00662;locus_tag=Cj1568c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501017	1501049	.	-	.	ID=id-Cj1568c-5;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=nuoL;inference=protein motif:Prosite:PS00013;locus_tag=Cj1568c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1501081	1501377	.	-	.	ID=gene-Cj1569c;Name=nuoK;gbkey=Gene;gene=nuoK;gene_biotype=protein_coding;locus_tag=Cj1569c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1501081	1501377	.	-	0	ID=cds-CAL35666.1;Parent=gene-Cj1569c;Dbxref=EnsemblGenomes-Gn:Cj1569c,EnsemblGenomes-Tr:CAL35666,GOA:Q0P859,InterPro:IPR001133,UniProtKB/TrEMBL:Q0P859,NCBI_GP:CAL35666.1;Name=CAL35666.1;Note=Original (2000) note: Cj1569c%2C nuoK%2C probable NADH dehydrogenase I chain K%2C len: 98 aa%3B similar to many e.g. NUOK_ECOLI NADH dehydrogenase I chain K (EC 1.6.5.3) (100 aa)%2C fasta scores%3B opt: 212 z-score: 302.0 E(): 1.7e-09%2C32.6%25 identity in 95 aa overlap. 45.8%25 identity to HP1270. Contains Pfam match to entry PF00420 oxidored_q2%2CNADH-ubiquinone/plastoquinone oxidoreductase chain 4L%3B~Updated (2006) note: Characterised operon within Escherichia coli. Appropriate motifs present. Identity score was acceptable%2C so putative not added to product function. Three probable transmembrane helices predicted by TMHMM2.0. Functional classification - Energy metabolism - Respiration - Aerobic%3B~PMID:7565112%2C PMID:7730262%2C PMID:15368583%2CPMID:15996109;gbkey=CDS;gene=nuoK;inference=protein motif:TMHMM:2.0;locus_tag=Cj1569c;product=NADH dehydrogenase I chain K;protein_id=CAL35666.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501138	1501206	.	-	.	ID=id-Cj1569c;Note=3 probable transmembrane helices predicted for Cj1569c by TMHMM2.0 at aa 5-21%2C 26-48 and 58-80;gbkey=misc_feature;gene=nuoK;inference=protein motif:TMHMM:2.0;locus_tag=Cj1569c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501234	1501302	.	-	.	ID=id-Cj1569c;Note=3 probable transmembrane helices predicted for Cj1569c by TMHMM2.0 at aa 5-21%2C 26-48 and 58-80;gbkey=misc_feature;gene=nuoK;inference=protein motif:TMHMM:2.0;locus_tag=Cj1569c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501315	1501365	.	-	.	ID=id-Cj1569c;Note=3 probable transmembrane helices predicted for Cj1569c by TMHMM2.0 at aa 5-21%2C 26-48 and 58-80;gbkey=misc_feature;gene=nuoK;inference=protein motif:TMHMM:2.0;locus_tag=Cj1569c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501093	1501368	.	-	.	ID=id-Cj1569c-2;Note=HMMPfam hit to PF00420%2CNADH-ubiquinone/plastoquinone oxidoreduct%2C score 1.5e-33;gbkey=misc_feature;gene=nuoK;inference=protein motif:Pfam:PF00420;locus_tag=Cj1569c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501171	1501203	.	-	.	ID=id-Cj1569c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=nuoK;inference=protein motif:Prosite:PS00013;locus_tag=Cj1569c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1501374	1501892	.	-	.	ID=gene-Cj1570c;Name=nuoJ;gbkey=Gene;gene=nuoJ;gene_biotype=protein_coding;locus_tag=Cj1570c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1501374	1501892	.	-	0	ID=cds-CAL35667.1;Parent=gene-Cj1570c;Dbxref=EnsemblGenomes-Gn:Cj1570c,EnsemblGenomes-Tr:CAL35667,GOA:Q0P858,InterPro:IPR001457,UniProtKB/TrEMBL:Q0P858,NCBI_GP:CAL35667.1;Name=CAL35667.1;Note=Original (2000) note: Cj1570c%2C nuoJ%2C probable NADH dehydrogenase I chain J%2C len: 172 aa%3B similar to many e.g. NUOJ_ECOLI NADH dehydrogenase I chain J (EC 1.6.5.3) (184 aa)%2C fasta scores%3B opt: 190 z-score: 238.9 E(): 5.5e-06%2C26.3%25 identity in 175 aa overlap. 40.6%25 identity to HP1269. Contains Pfam match to entry PF00499 oxidored_q3%2CNADH-ubiquinone/plastoquinone oxidoreductase chain 6%3B~Updated (2006) note: Characterised operon within Escherichia coli. Appropriate motifs present. Identity score was marginal%2C however%2C putative not added to product function. Five probable transmembrane helices predicted by TMHMM2.0. Functional classification - Energy metabolism -Respiration - Aerobic%3B~PMID:7565112%2C PMID:7730262%2C PMID:15368583%2CPMID:15736965;gbkey=CDS;gene=nuoJ;inference=protein motif:TMHMM:2.0;locus_tag=Cj1570c;product=NADH dehydrogenase I chain J;protein_id=CAL35667.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501404	1501472	.	-	.	ID=id-Cj1570c;Note=5 probable transmembrane helices predicted for Cj1570c by TMHMM2.0 at aa 5-24%2C 28-47%2C 54-76%2C 91-110 and 141-163;gbkey=misc_feature;gene=nuoJ;inference=protein motif:TMHMM:2.0;locus_tag=Cj1570c;part=1/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501563	1501622	.	-	.	ID=id-Cj1570c;Note=5 probable transmembrane helices predicted for Cj1570c by TMHMM2.0 at aa 5-24%2C 28-47%2C 54-76%2C 91-110 and 141-163;gbkey=misc_feature;gene=nuoJ;inference=protein motif:TMHMM:2.0;locus_tag=Cj1570c;part=2/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501665	1501733	.	-	.	ID=id-Cj1570c;Note=5 probable transmembrane helices predicted for Cj1570c by TMHMM2.0 at aa 5-24%2C 28-47%2C 54-76%2C 91-110 and 141-163;gbkey=misc_feature;gene=nuoJ;inference=protein motif:TMHMM:2.0;locus_tag=Cj1570c;part=3/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501752	1501811	.	-	.	ID=id-Cj1570c;Note=5 probable transmembrane helices predicted for Cj1570c by TMHMM2.0 at aa 5-24%2C 28-47%2C 54-76%2C 91-110 and 141-163;gbkey=misc_feature;gene=nuoJ;inference=protein motif:TMHMM:2.0;locus_tag=Cj1570c;part=4/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501821	1501880	.	-	.	ID=id-Cj1570c;Note=5 probable transmembrane helices predicted for Cj1570c by TMHMM2.0 at aa 5-24%2C 28-47%2C 54-76%2C 91-110 and 141-163;gbkey=misc_feature;gene=nuoJ;inference=protein motif:TMHMM:2.0;locus_tag=Cj1570c;part=5/5
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1501401	1501889	.	-	.	ID=id-Cj1570c-2;Note=HMMPfam hit to PF00499%2CNADH-ubiquinone/plastoquinone oxidoreduct%2C score 2.8e-07;gbkey=misc_feature;gene=nuoJ;inference=protein motif:Pfam:PF00499;locus_tag=Cj1570c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1501889	1502530	.	-	.	ID=gene-Cj1571c;Name=nuoI;gbkey=Gene;gene=nuoI;gene_biotype=protein_coding;locus_tag=Cj1571c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1501889	1502530	.	-	0	ID=cds-CAL35668.1;Parent=gene-Cj1571c;Dbxref=EnsemblGenomes-Gn:Cj1571c,EnsemblGenomes-Tr:CAL35668,GOA:Q0P857,InterPro:IPR001450,InterPro:IPR010226,InterPro:IPR017896,InterPro:IPR017900,NCBI_GP:CAL35668.1;Name=CAL35668.1;Note=Original (2000) note: Cj1571c%2C nuoI%2C probable NADH dehydrogenase I chain I%2C len: 213 aa%3B similar to many e.g. NUOI_RHOCA NADH dehydrogenase I chain I (EC 1.6.5.3) (163 aa)%2C fasta scores%3B opt: 314 z-score: 370.4 E(): 2.6e-13%2C41.3%25 identity in 109 aa overlap. 49.5%25 identity to HP1268. Contains PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature%2C and Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains%3B~Updated (2006) note: Characterised operon within Escherichia coli. Appropriate motifs present. Identity score was acceptable so putative not added to product function. Eight probable transmembrane helices predicted by TMHMM2.0. Functional classification - Energy metabolism - Respiration - Aerobic%3B~PMID:7565112%2C PMID:7730262%2C PMID:15368583;gbkey=CDS;gene=nuoI;inference=protein motif:TMHMM:2.0;locus_tag=Cj1571c;product=NADH dehydrogenase I chain I;protein_id=CAL35668.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1502117	1502188	.	-	.	ID=id-Cj1571c;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 2.9e-07;gbkey=misc_feature;gene=nuoI;inference=protein motif:Pfam:PF00037;locus_tag=Cj1571c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1502132	1502167	.	-	.	ID=id-Cj1571c-2;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=nuoI;inference=protein motif:Prosite:PS00198;locus_tag=Cj1571c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1502234	1502305	.	-	.	ID=id-Cj1571c-3;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.00011;gbkey=misc_feature;gene=nuoI;inference=protein motif:Pfam:PF00037;locus_tag=Cj1571c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1502540	1503538	.	-	.	ID=gene-Cj1572c;Name=nuoH;gbkey=Gene;gene=nuoH;gene_biotype=protein_coding;locus_tag=Cj1572c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1502540	1503538	.	-	0	ID=cds-CAL35669.1;Parent=gene-Cj1572c;Dbxref=EnsemblGenomes-Gn:Cj1572c,EnsemblGenomes-Tr:CAL35669,GOA:Q9PMA3,InterPro:IPR001694,InterPro:IPR018086,NCBI_GP:CAL35669.1;Name=CAL35669.1;Note=Original (2000) note: Cj1572c%2C nuoH%2C probable NADH dehydrogenase I chain H%2C len: 332 aa%3B similar to many e.g. NUOH_MYCTU NADH dehydrogenase I chain H (EC 1.6.5.3) (410 aa)%2C fasta scores%3B opt: 724 z-score: 845.2 E(): 0%2C 37.8%25 identity in 323 aa overlap. 55.2%25 identity to HP1267. Contains PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1%2C and Pfam match to entry PF00146 NADHdh%2C NADH dehydrogenases%3B~Updated (2006) note: Characterised operon within Escherichia coli. Appropriate motifs present. Identity score was acceptable%2C so putative not added to product function. Eight probable transmembrane helices predicted by TMHMM2.0. Functional classification - Energy metabolism - Respiration - Aerobic%3B~PMID:7565112%2C PMID:7730262%2C PMID:15368583%2CPMID:11245799;gbkey=CDS;gene=nuoH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1572c;product=NADH dehydrogenase I chain H;protein_id=CAL35669.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1502549	1502608	.	-	.	ID=id-Cj1572c;Note=8 probable transmembrane helices predicted for Cj1572c by TMHMM2.0 at aa 10-32%2C 78-100%2C 120-142%2C 155-177%2C192-214%2C 246-268%2C 272-294 and 311-330;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1572c;part=1/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1502657	1502725	.	-	.	ID=id-Cj1572c;Note=8 probable transmembrane helices predicted for Cj1572c by TMHMM2.0 at aa 10-32%2C 78-100%2C 120-142%2C 155-177%2C192-214%2C 246-268%2C 272-294 and 311-330;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1572c;part=2/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1502735	1502803	.	-	.	ID=id-Cj1572c;Note=8 probable transmembrane helices predicted for Cj1572c by TMHMM2.0 at aa 10-32%2C 78-100%2C 120-142%2C 155-177%2C192-214%2C 246-268%2C 272-294 and 311-330;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1572c;part=3/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1502897	1502965	.	-	.	ID=id-Cj1572c;Note=8 probable transmembrane helices predicted for Cj1572c by TMHMM2.0 at aa 10-32%2C 78-100%2C 120-142%2C 155-177%2C192-214%2C 246-268%2C 272-294 and 311-330;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1572c;part=4/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1503008	1503076	.	-	.	ID=id-Cj1572c;Note=8 probable transmembrane helices predicted for Cj1572c by TMHMM2.0 at aa 10-32%2C 78-100%2C 120-142%2C 155-177%2C192-214%2C 246-268%2C 272-294 and 311-330;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1572c;part=5/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1503113	1503181	.	-	.	ID=id-Cj1572c;Note=8 probable transmembrane helices predicted for Cj1572c by TMHMM2.0 at aa 10-32%2C 78-100%2C 120-142%2C 155-177%2C192-214%2C 246-268%2C 272-294 and 311-330;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1572c;part=6/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1503239	1503307	.	-	.	ID=id-Cj1572c;Note=8 probable transmembrane helices predicted for Cj1572c by TMHMM2.0 at aa 10-32%2C 78-100%2C 120-142%2C 155-177%2C192-214%2C 246-268%2C 272-294 and 311-330;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1572c;part=7/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1503443	1503511	.	-	.	ID=id-Cj1572c;Note=8 probable transmembrane helices predicted for Cj1572c by TMHMM2.0 at aa 10-32%2C 78-100%2C 120-142%2C 155-177%2C192-214%2C 246-268%2C 272-294 and 311-330;gbkey=misc_feature;gene=nuoH;inference=protein motif:TMHMM:2.0;locus_tag=Cj1572c;part=8/8
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1502546	1503511	.	-	.	ID=id-Cj1572c-2;Note=HMMPfam hit to PF00146%2C NADH dehydrogenase%2C score 8.9e-82;gbkey=misc_feature;gene=nuoH;inference=protein motif:Pfam:PF00146;locus_tag=Cj1572c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1503335	1503382	.	-	.	ID=id-Cj1572c-3;Note=PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1;gbkey=misc_feature;gene=nuoH;inference=protein motif:Prosite:PS00667;locus_tag=Cj1572c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1503531	1505993	.	-	.	ID=gene-Cj1573c;Name=nuoG;gbkey=Gene;gene=nuoG;gene_biotype=protein_coding;locus_tag=Cj1573c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1503531	1505993	.	-	0	ID=cds-CAL35670.1;Parent=gene-Cj1573c;Dbxref=EnsemblGenomes-Gn:Cj1573c,EnsemblGenomes-Tr:CAL35670,GOA:Q0P855,InterPro:IPR001041,InterPro:IPR012675,InterPro:IPR017896,InterPro:IPR017900,InterPro:IPR019574,UniProtKB/TrEMBL:Q0P855,NCBI_GP:CAL35670.1;Name=CAL35670.1;Note=Original (2000) note: Cj1573c%2C nuoG%2C probable NADH dehydrogenase I chain G%2C len: 820 aa%3B similar to many e.g. NUAM_RECAM NADH-ubiquinone oxidoreductase 75 kD subunit (691 aa)%2C fasta scores%3B opt: 320 z-score: 333.6 E(): 2.9e-11%2C 25.3%25 identity in 450 aa overlap%2C and NUOG_ECOLI NADH dehydrogenase I chain G (907 aa)%2C blastp scores%3B E%3D 1.8e-10%2C 26%25 identity in 161 aa overlap%2C 30%25 identity in 43 aa overlap and 36%25 identity in 22 overlap. 36.3%25 identity to HP1266. Contains PS00198 4Fe-4S ferredoxins%2Ciron-sulfur binding region signature%2C and 2x Pfam match to entry PF00037 fer4%2C 4Fe-4S ferredoxins and related iron-sulfur cluster binding domains%3B~Updated (2006) note: Characterised within Escherichia coli and appropriate motifs present. Identity score was marginal. This particular CDS within Escherichia coli was partially characterised. Thus%2C putative kept within product function. Functional classification -Energy metabolism - Respiration - Aerobic%3B~PMID:8057835%2C PMID:7565112%2C PMID:7730262%2CPMID:15368583%2C PMID:15520003%2C PMID:10985736;gbkey=CDS;gene=nuoG;inference=protein motif:Prosite:PS00198;locus_tag=Cj1573c;product=putative NADH dehydrogenase I chain G;protein_id=CAL35670.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1505331	1505402	.	-	.	ID=id-Cj1573c;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 2.2e-05;gbkey=misc_feature;gene=nuoG;inference=protein motif:Pfam:PF00037;locus_tag=Cj1573c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1505346	1505381	.	-	.	ID=id-Cj1573c-2;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;gene=nuoG;inference=protein motif:Prosite:PS00198;locus_tag=Cj1573c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1505520	1505591	.	-	.	ID=id-Cj1573c-3;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.014;gbkey=misc_feature;gene=nuoG;inference=protein motif:Pfam:PF00037;locus_tag=Cj1573c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1505799	1505987	.	-	.	ID=id-Cj1573c-4;Note=HMMPfam hit to PF00111%2C 2Fe-2S iron-sulfur cluster binding domain%2C score 2e-07;gbkey=misc_feature;gene=nuoG;inference=protein motif:Pfam:PF00111;locus_tag=Cj1573c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1505990	1506682	.	-	.	ID=gene-Cj1574c;Name=Cj1574c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1574c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1505990	1506682	.	-	0	ID=cds-CAL35671.1;Parent=gene-Cj1574c;Dbxref=EnsemblGenomes-Gn:Cj1574c,EnsemblGenomes-Tr:CAL35671,UniProtKB/TrEMBL:Q0P854,NCBI_GP:CAL35671.1;Name=CAL35671.1;Note=Original (2000) note: Cj1574c%2C unknown%2C len: 230 aa%3B 26.5%25 identity to HP1265. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1574c;product=hypothetical protein Cj1574c;protein_id=CAL35671.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1506679	1506906	.	-	.	ID=gene-Cj1575c;Name=Cj1575c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1575c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1506679	1506906	.	-	0	ID=cds-CAL35672.1;Parent=gene-Cj1575c;Dbxref=EnsemblGenomes-Gn:Cj1575c,EnsemblGenomes-Tr:CAL35672,UniProtKB/TrEMBL:Q0P853,NCBI_GP:CAL35672.1;Name=CAL35672.1;Note=Original (2000) note: Cj1575c%2C unknown%2C len: 75 aa%3B 52.0%25 identity to HP1264. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1575c;product=hypothetical protein Cj1575c;protein_id=CAL35672.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1506903	1508129	.	-	.	ID=gene-Cj1576c;Name=nuoD;gbkey=Gene;gene=nuoD;gene_biotype=protein_coding;locus_tag=Cj1576c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1506903	1508129	.	-	0	ID=cds-CAL35673.1;Parent=gene-Cj1576c;Dbxref=EnsemblGenomes-Gn:Cj1576c,EnsemblGenomes-Tr:CAL35673,GOA:Q9PM99,InterPro:IPR001135,InterPro:IPR022885,InterPro:IPR029014,NCBI_GP:CAL35673.1;Name=CAL35673.1;Note=Original (2000) note: Cj1576c%2C nuoD%2C probable NADH dehydrogenase I chain D%2C len: 408 aa%3B similar to many e.g. NUCM_CAEEL probable NADH-ubiquinone oxidoreductase 49 kD subunit (482 aa)%2C fasta scores%3B opt: 1207 z-score: 1474.5 E(): 0%2C 44.4%25 identity in 392 aa overlap%2C and NUOD_ECOLI NADH dehydrogenase I chain D (EC 1.6.5.3) (407 aa)%2C blastp scores%3B E%3D 2.7e-73%2C 38%25 in 392 aa overlap. 60.6%25 identity to HP1263. Contains Pfam match to entry PF00346 complex1_49Kd%2C Respiratory-chain NADH dehydrogenase%2C 49 Kd subunit%3B~Updated (2006) note: Characterised operon within Escherichia coli. Appropriate motifs present. Identity score was acceptable%2C so putative not added to product function. Functional classification - Energy metabolism -Respiration - Aerobic%3B~PMID:7565112%2C PMID:7730262%2C PMID:15368583;gbkey=CDS;gene=nuoD;inference=protein motif:Pfam:PF00346;locus_tag=Cj1576c;product=NADH dehydrogenase I chain D;protein_id=CAL35673.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1506906	1507724	.	-	.	ID=id-Cj1576c;Note=HMMPfam hit to PF00346%2C Respiratory-chain NADH dehydrogenase%2C%2C score 6.6e-104;gbkey=misc_feature;gene=nuoD;inference=protein motif:Pfam:PF00346;locus_tag=Cj1576c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1508131	1508925	.	-	.	ID=gene-Cj1577c;Name=nuoC;gbkey=Gene;gene=nuoC;gene_biotype=protein_coding;locus_tag=Cj1577c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1508131	1508925	.	-	0	ID=cds-CAL35674.1;Parent=gene-Cj1577c;Dbxref=EnsemblGenomes-Gn:Cj1577c,EnsemblGenomes-Tr:CAL35674,GOA:Q0P851,InterPro:IPR001268,InterPro:IPR010218,InterPro:IPR020396,UniProtKB/TrEMBL:Q0P851,NCBI_GP:CAL35674.1;Name=CAL35674.1;Note=Original (2000) note: Cj1577c%2C nuoC%2C probable NADH dehydrogenase I chain C%2C len: 264 aa%3B similar to e.g. NUGM_HUMAN NADH-ubiquinone oxidoreductase 30 kD subunit (264 aa)%2C fasta scores%3B opt: 316 z-score: 376.3 E(): 1.2e-13%2C 38.2%25 identity in 136 aa overlap%2C and NUOC_ECOLI NADH dehydrogenase I chain C (EC 1.6.5.3) (183 aa)%2C blastp scores%3B E%3D 3.2e-15%2C 34%25 identity in 126 aa overlap. 44.2%25 identity to HP1262. Contains PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature%2C and Pfam match to entry PF00329 complex1_30Kd%2C Respiratory-chain NADH dehydrogenase%2C 30 Kd subunit%3B~Updated (2006) note: Characterised operon within Escherichia coli. Appropriate motifs present. Identity score was acceptable%2C so putative not added to product function. Functional classification - Energy metabolism -Respiration - Aerobic%3B~PMID:7565112%2C PMID:7730262%2C PMID:15368583;gbkey=CDS;gene=nuoC;inference=protein motif:Prosite:PS00542;locus_tag=Cj1577c;product=NADH dehydrogenase I chain C;protein_id=CAL35674.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1508377	1508580	.	-	.	ID=id-Cj1577c;Note=HMMPfam hit to PF00329%2C Respiratory-chain NADH dehydrogenase%2C%2C score 1.7e-36;gbkey=misc_feature;gene=nuoC;inference=protein motif:Pfam:PF00329;locus_tag=Cj1577c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1508443	1508508	.	-	.	ID=id-Cj1577c-2;Note=PS00542 Respiratory chain NADH dehydrogenase 30 Kd subunit signature;gbkey=misc_feature;gene=nuoC;inference=protein motif:Prosite:PS00542;locus_tag=Cj1577c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1508922	1509425	.	-	.	ID=gene-Cj1578c;Name=nuoB;gbkey=Gene;gene=nuoB;gene_biotype=protein_coding;locus_tag=Cj1578c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1508922	1509425	.	-	0	ID=cds-CAL35675.1;Parent=gene-Cj1578c;Dbxref=EnsemblGenomes-Gn:Cj1578c,EnsemblGenomes-Tr:CAL35675,GOA:Q0P850,InterPro:IPR006137,InterPro:IPR006138,NCBI_GP:CAL35675.1;Name=CAL35675.1;Note=Original (2000) note: Cj1578c%2C nuoB%2C probable NADH dehydrogenase I chain B%2C len: 167 aa%3B similar to many e.g. NUKM_SOLTU NADH-ubiquinone oxidoreductase 20 kD subunit (213 aa)%2C fasta scores%3B opt: 645 z-score: 841.2 E(): 0%2C59.4%25 identity in 143 aa overlap%2C and NUOB_ECOLI NADH dehydrogenase I chain B (EC 1.6.5.3) (220 aa)%2C fasta scores%3B opt: 587 z-score: 766.2 E(): 0%2C 52.8%25 identity in 144 aa overlap. 80.0%25 identity to HP1261. Contains Pfam match to entry PF01058 oxidored_q6%2C NADH ubiquinone oxidoreductase%2C 20 Kd subunit%3B~Updated (2006) note: Characterised operon within Escherichia coli. Appropriate motifs present. Identity score was acceptable%2C so putative not added to product function. Functional classification - Energy metabolism -Respiration - Aerobic%3B~PMID:7565112%2C PMID:7730262%2C PMID:15368583%2CPMID:12975362;gbkey=CDS;gene=nuoB;inference=protein motif:Pfam:PF01058;locus_tag=Cj1578c;product=NADH dehydrogenase I chain B;protein_id=CAL35675.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1508979	1509299	.	-	.	ID=id-Cj1578c;Note=HMMPfam hit to PF01058%2C NADH ubiquinone oxidoreductase%2C 20 Kd sub%2C score 1.1e-56;gbkey=misc_feature;gene=nuoB;inference=protein motif:Pfam:PF01058;locus_tag=Cj1578c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1509407	1509796	.	-	.	ID=gene-Cj1579c;Name=nuoA;gbkey=Gene;gene=nuoA;gene_biotype=protein_coding;locus_tag=Cj1579c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1509407	1509796	.	-	0	ID=cds-CAL35676.1;Parent=gene-Cj1579c;Dbxref=EnsemblGenomes-Gn:Cj1579c,EnsemblGenomes-Tr:CAL35676,GOA:Q0P849,InterPro:IPR000440,UniProtKB/TrEMBL:Q0P849,NCBI_GP:CAL35676.1;Name=CAL35676.1;Note=Original (2000) note: Cj1579c%2C nuoA%2C probable NADH dehydrogenase I chain A%2C len: 129 aa%3B similar to many e.g. NU3M_WHEAT NADH-ubiquinone oxidoreductase chain 3 (118 aa)%2C fasta scores%3B opt: 274 z-score: 357.9 E(): 1.3e-12%2C34.5%25 identity in 116 aa overlap%2C and NUOA_ECOLI NADH dehydrogenase I chain A(EC 1.6.5.3) (147 aa)%2C blastp scores%3B E %3D 3.0e-12%2C 29%25 identity in 124 aa overlap. 43.1%25 identity to HP1260. Contains Pfam match to entry PF00507 oxidored_q4%2C NADH-ubiquinone/plastoquinone oxidoreductase%2Cchain 3%3B~Updated (2006) note: Three probable transmembrane helices predicted by TMHMM2.0. Characterised operon within Escherichia coli with appropriate motifs present. Identity scores were marginal. Putative not added to product function. Functional classification - Energy metabolism -Respiration - Aerobic%3B~PMID:7565112%2C PMID:7730262%2C PMID:15368583%2CPMID:15175326;gbkey=CDS;gene=nuoA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1579c;product=NADH dehydrogenase I chain A;protein_id=CAL35676.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1509443	1509511	.	-	.	ID=id-Cj1579c;Note=3 probable transmembrane helices predicted for Cj1579c by TMHMM2.0 at aa 10-32%2C 69-91 and 96-118;gbkey=misc_feature;gene=nuoA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1579c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1509524	1509592	.	-	.	ID=id-Cj1579c;Note=3 probable transmembrane helices predicted for Cj1579c by TMHMM2.0 at aa 10-32%2C 69-91 and 96-118;gbkey=misc_feature;gene=nuoA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1579c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1509701	1509769	.	-	.	ID=id-Cj1579c;Note=3 probable transmembrane helices predicted for Cj1579c by TMHMM2.0 at aa 10-32%2C 69-91 and 96-118;gbkey=misc_feature;gene=nuoA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1579c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1509422	1509646	.	-	.	ID=id-Cj1579c-2;Note=HMMPfam hit to PF00507%2CNADH-ubiquinone/plastoquinone oxidoreduct%2C score 6.6e-17;gbkey=misc_feature;gene=nuoA;inference=protein motif:Pfam:PF00507;locus_tag=Cj1579c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1509909	1510574	.	-	.	ID=gene-Cj1580c;Name=Cj1580c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1580c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1509909	1510574	.	-	0	ID=cds-CAL35677.1;Parent=gene-Cj1580c;Dbxref=EnsemblGenomes-Gn:Cj1580c,EnsemblGenomes-Tr:CAL35677,GOA:Q0P848,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P848,NCBI_GP:CAL35677.1;Name=CAL35677.1;Note=Original (2000) note: Cj1580c%2C probable peptide ABC-transport system ATP-binding protein%2C len: 221 aa%3B similar to e.g. DPPF_ECOLI dipeptide transport ATP-binding protein (334 aa)%2C fasta scores%3B opt: 436 z-score: 498.1 E(): 2e-20%2C 34.8%25 identity in 210 aa overlap%2C and APPF_BACSU oligopeptide transport ATP-binding protein (329 aa)%2C fasta scores%3B opt: 419 z-score: 479.2 E(): 2.3e-19%2C30.8%25 identity in 211 aa overlap. 30.6%25 identity to HP0302. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Similar to different transport systems with acceptable identity scores. Putative kept within product function. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj1580c;product=putative peptide ABC-transport system ATP-binding protein;protein_id=CAL35677.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1509912	1510466	.	-	.	ID=id-Cj1580c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 1.6e-35;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj1580c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1510089	1510133	.	-	.	ID=id-Cj1580c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj1580c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1510422	1510445	.	-	.	ID=id-Cj1580c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1580c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1510567	1511277	.	-	.	ID=gene-Cj1581c;Name=Cj1581c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1581c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1510567	1511277	.	-	0	ID=cds-CAL35678.1;Parent=gene-Cj1581c;Dbxref=EnsemblGenomes-Gn:Cj1581c,EnsemblGenomes-Tr:CAL35678,GOA:Q0P847,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR025662,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P847,NCBI_GP:CAL35678.1;Name=CAL35678.1;Note=Original (2000) note: Cj1581c%2C probable peptide ABC-transport system ATP-binding protein%2C len: 236 aa%3B similar to e.g. OPPD_ECOLI oligopeptide transport ATP-binding protein (337 aa)%2C fasta scores opt: 385 z-score: 442.8 E(): 2.4e-17%2C 31.5%25 identity in 232 aa overlap. 29.8%25 identity to HP0301. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Similar to different transport systems with acceptable identity scores. Putative kept within product function. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj1581c;product=putative peptide ABC-transport system ATP-binding protein;protein_id=CAL35678.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1510618	1511202	.	-	.	ID=id-Cj1581c;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 1.5e-29;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj1581c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1510798	1510842	.	-	.	ID=id-Cj1581c-2;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj1581c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1511152	1511193	.	-	.	ID=id-Cj1581c-3;Note=PS00675 Sigma-54 interaction domain ATP-binding region A signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00675;locus_tag=Cj1581c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1511158	1511181	.	-	.	ID=id-Cj1581c-4;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1581c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1511274	1512068	.	-	.	ID=gene-Cj1582c;Name=Cj1582c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1582c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1511274	1512068	.	-	0	ID=cds-CAL35679.1;Parent=gene-Cj1582c;Dbxref=EnsemblGenomes-Gn:Cj1582c,EnsemblGenomes-Tr:CAL35679,GOA:Q0P846,InterPro:IPR000515,UniProtKB/TrEMBL:Q0P846,NCBI_GP:CAL35679.1;Name=CAL35679.1;Note=Original (2000) note: Cj1582c%2C probable peptide ABC-transport system permease protein%2C len: 264 aa%3B similar to e.g. PPC_BACSU oligopeptide transport permease protein (303 aa)%2C fasta scores%3B opt: 397 z-score: 467.3 E(): 1e-18%2C 29.1%25 identity in 261 aa overlap. 26.3%25 identity to HP0300. Contains Pfam match to entry PF00528 BPD_transp%2C Binding-protein-dependent transport systems inner membrane component%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Similar to different transport systems with acceptable identity scores. Putative kept within product function. Functional classification - Transport/binding proteins - Other%3B~PMID:16045618;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1582c;product=putative peptide ABC-transport system permease protein;protein_id=CAL35679.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1511310	1511378	.	-	.	ID=id-Cj1582c;Note=6 probable transmembrane helices predicted for Cj1582c by TMHMM2.0 at aa 7-29%2C 69-91%2C 103-122%2C 126-145%2C176-198 and 231-253;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1582c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1511475	1511543	.	-	.	ID=id-Cj1582c;Note=6 probable transmembrane helices predicted for Cj1582c by TMHMM2.0 at aa 7-29%2C 69-91%2C 103-122%2C 126-145%2C176-198 and 231-253;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1582c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1511634	1511693	.	-	.	ID=id-Cj1582c;Note=6 probable transmembrane helices predicted for Cj1582c by TMHMM2.0 at aa 7-29%2C 69-91%2C 103-122%2C 126-145%2C176-198 and 231-253;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1582c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1511703	1511762	.	-	.	ID=id-Cj1582c;Note=6 probable transmembrane helices predicted for Cj1582c by TMHMM2.0 at aa 7-29%2C 69-91%2C 103-122%2C 126-145%2C176-198 and 231-253;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1582c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1511796	1511864	.	-	.	ID=id-Cj1582c;Note=6 probable transmembrane helices predicted for Cj1582c by TMHMM2.0 at aa 7-29%2C 69-91%2C 103-122%2C 126-145%2C176-198 and 231-253;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1582c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1511982	1512050	.	-	.	ID=id-Cj1582c;Note=6 probable transmembrane helices predicted for Cj1582c by TMHMM2.0 at aa 7-29%2C 69-91%2C 103-122%2C 126-145%2C176-198 and 231-253;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1582c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1511277	1511873	.	-	.	ID=id-Cj1582c-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 3.9e-14;gbkey=misc_feature;inference=protein motif:Pfam:PF00528;locus_tag=Cj1582c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1512055	1512999	.	-	.	ID=gene-Cj1583c;Name=Cj1583c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1583c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1512055	1512999	.	-	0	ID=cds-CAL35680.1;Parent=gene-Cj1583c;Dbxref=EnsemblGenomes-Gn:Cj1583c,EnsemblGenomes-Tr:CAL35680,GOA:Q0P845,InterPro:IPR000515,UniProtKB/TrEMBL:Q0P845,NCBI_GP:CAL35680.1;Name=CAL35680.1;Note=Original (2000) note: Cj1583c%2C probable peptide ABC-transport system permease protein%2C len: 314 aa%3B similar to e.g. OPPB_LACLC oligopeptide transport system permease protein (319 aa)%2C fasta scores%3B opt: 476 z-score: 540.7 E(): 8.5e-23%2C 28.4%25 identity in 317 aa overlap. 24.1%25 identity to HP0299%3B~Updated (2006) note: Six probable transmembrane helices predicted by TMHMM2.0. Pfam domain PF00528 Binding-protein-dependent transport system inner membrane component identified within CDS. Similar to different transport systems with acceptable identity scores. Putative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1583c;product=putative peptide ABC-transport system permease protein;protein_id=CAL35680.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1512100	1512168	.	-	.	ID=id-Cj1583c;Note=6 probable transmembrane helices predicted for Cj1583c by TMHMM2.0 at aa 5-24%2C 96-118%2C 131-153%2C 179-198%2C236-258 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1583c;part=1/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1512226	1512294	.	-	.	ID=id-Cj1583c;Note=6 probable transmembrane helices predicted for Cj1583c by TMHMM2.0 at aa 5-24%2C 96-118%2C 131-153%2C 179-198%2C236-258 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1583c;part=2/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1512406	1512465	.	-	.	ID=id-Cj1583c;Note=6 probable transmembrane helices predicted for Cj1583c by TMHMM2.0 at aa 5-24%2C 96-118%2C 131-153%2C 179-198%2C236-258 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1583c;part=3/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1512541	1512609	.	-	.	ID=id-Cj1583c;Note=6 probable transmembrane helices predicted for Cj1583c by TMHMM2.0 at aa 5-24%2C 96-118%2C 131-153%2C 179-198%2C236-258 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1583c;part=4/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1512646	1512714	.	-	.	ID=id-Cj1583c;Note=6 probable transmembrane helices predicted for Cj1583c by TMHMM2.0 at aa 5-24%2C 96-118%2C 131-153%2C 179-198%2C236-258 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1583c;part=5/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1512928	1512987	.	-	.	ID=id-Cj1583c;Note=6 probable transmembrane helices predicted for Cj1583c by TMHMM2.0 at aa 5-24%2C 96-118%2C 131-153%2C 179-198%2C236-258 and 278-300;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1583c;part=6/6
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1512070	1512729	.	-	.	ID=id-Cj1583c-2;Note=HMMPfam hit to PF00528%2C Binding-protein-dependent transport syst%2C score 2.8e-47;gbkey=misc_feature;inference=protein motif:Pfam:PF00528;locus_tag=Cj1583c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1512999	1514534	.	-	.	ID=gene-Cj1584c;Name=Cj1584c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1584c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1512999	1514534	.	-	0	ID=cds-CAL35681.1;Parent=gene-Cj1584c;Dbxref=EnsemblGenomes-Gn:Cj1584c,EnsemblGenomes-Tr:CAL35681,GOA:Q0P844,InterPro:IPR000914,PDB:4OET,PDB:4OEU,PDB:4OEV,UniProtKB/TrEMBL:Q0P844,NCBI_GP:CAL35681.1;Name=CAL35681.1;Note=Original (2000) note: Cj1584c%2C probable peptide ABC-transport system periplasmic peptide-binding protein%2Clen: 511 aa%3B similar to e.g. APPA_BACSU oligopeptide-binding protein APPA precursor (543 aa)%2Cfasta scores%3B opt: 700 z-score: 791.8 E(): 0%2C 30.5%25 identity in 509 aa overlap. 26.7%25 identity to HP0298. Contains probable N-terminal signal sequence and Pfam match to entry PF00496 SBP_bac_5%2C Bacterial extracellular solute-binding proteins%2C family 5%3B~Updated (2006) note: Prosite domain PS00092 N6_MTASE%2C N-6 Adenine-specific DNA methylases signature identified within CDS. Similar to different transport systems with acceptable identity scores. Putative kept within product function. Functional classification -Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:Prosite:PS00092;locus_tag=Cj1584c;product=putative peptide ABC-transport system periplasmic peptide-binding protein;protein_id=CAL35681.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1513122	1513142	.	-	.	ID=id-Cj1584c;Note=PS00092 N-6 Adenine-specific DNA methylases signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00092;locus_tag=Cj1584c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1513269	1514351	.	-	.	ID=id-Cj1584c-2;Note=HMMPfam hit to PF00496%2C Bacterial extracellular solute-binding prot%2C score 7.9e-72;gbkey=misc_feature;inference=protein motif:Pfam:PF00496;locus_tag=Cj1584c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1514644	1517415	.	-	.	ID=gene-Cj1585c;Name=Cj1585c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1585c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1514644	1517415	.	-	0	ID=cds-CAL35682.1;Parent=gene-Cj1585c;Dbxref=EnsemblGenomes-Gn:Cj1585c,EnsemblGenomes-Tr:CAL35682,GOA:Q0P843,InterPro:IPR004113,InterPro:IPR006094,InterPro:IPR009051,InterPro:IPR016164,InterPro:IPR016166,InterPro:IPR016167,InterPro:IPR016169,InterPro:IPR017896,InterPro:IPR017900,UniProtKB/TrEMBL:Q0P843,NCBI_GP:CAL35682.1;Name=CAL35682.1;Note=Original (2000) note: Cj1585c%2C probable oxidoreductase%2C len: 923 aa%3B similar to e.g. YDIJ_ECOLI (1018 aa)%2C fasta scores%3B opt: 299 z-score: 326.0 E(): 7.7e-11%2C 24.0%25 identity in 668 aa overlap%2C and GLCD_ECOLI glycolate oxidase subunit GLCD (499 aa)%2C fasta scores%3B opt: 258 z-score: 285.3 E(): 1.4e-08%2C 23.4%25 identity in 483 aa overlap. 49.2%25 identity to HP1222 (misannotated as D-lactate dehydrogenase). Contains PS00551 Prokaryotic molybdopterin oxidoreductases signature 1%2C ands 2x PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature%3B~Updated (2006) note: Pfam domains PF02913 FAD linked oxidases%2C C-terminal domain and PF01565 FAD binding domain were identified within CDS. Not specifically characterised with acceptable identity score. Thus%2Cputative kept within product function. Literature search identified paper giving further support to product function. Functional classification - Misc%3B~PMID:15292134;gbkey=CDS;inference=protein motif:Prosite:PS00551;locus_tag=Cj1585c;product=putative oxidoreductase;protein_id=CAL35682.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1515574	1515627	.	-	.	ID=id-Cj1585c;Note=PS00551 Prokaryotic molybdopterin oxidoreductases signature 1;gbkey=misc_feature;inference=protein motif:Prosite:PS00551;locus_tag=Cj1585c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1515595	1515630	.	-	.	ID=id-Cj1585c-2;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00198;locus_tag=Cj1585c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1515757	1515828	.	-	.	ID=id-Cj1585c-3;Note=HMMPfam hit to PF00037%2C 4Fe-4S binding domain%2Cscore 0.0085;gbkey=misc_feature;inference=protein motif:Pfam:PF00037;locus_tag=Cj1585c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1515772	1515807	.	-	.	ID=id-Cj1585c-4;Note=PS00198 4Fe-4S ferredoxins%2C iron-sulfur binding region signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00198;locus_tag=Cj1585c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1515880	1516626	.	-	.	ID=id-Cj1585c-5;Note=HMMPfam hit to PF02913%2C FAD linked oxidases%2CC-terminal domain%2C score 1.6e-70;gbkey=misc_feature;inference=protein motif:Pfam:PF02913;locus_tag=Cj1585c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1516666	1517298	.	-	.	ID=id-Cj1585c-6;Note=HMMPfam hit to PF01565%2C FAD binding domain%2C score 3.3e-39;gbkey=misc_feature;inference=protein motif:Pfam:PF01565;locus_tag=Cj1585c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1517567	1517989	.	+	.	ID=gene-Cj1586;Name=cgb;gbkey=Gene;gene=cgb;gene_biotype=protein_coding;locus_tag=Cj1586
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1517567	1517989	.	+	0	ID=cds-CAL35683.1;Parent=gene-Cj1586;Dbxref=EnsemblGenomes-Gn:Cj1586,EnsemblGenomes-Tr:CAL35683,GOA:Q0P842,InterPro:IPR000971,InterPro:IPR009050,InterPro:IPR012292,PDB:2WY4,UniProtKB/TrEMBL:Q0P842,NCBI_GP:CAL35683.1;Name=CAL35683.1;Note=Original (2000) note: Cj1586%2C probable bacterial haemoglobin%2C len: 140 aa%3B similar to e.g. BAHG_VITST bacterial hemoglobin (soluble cytochrome O) (146 aa)%2Cfasta scores%3B opt: 417 z-score: 527.0 E(): 4.9e-22%2C 49.6%25 identity in 141 aa overlap. No Hp match. Contains Pfam match to entry PF00042 globin%3B~Updated (2006) note: Characterised within Campylobacter jejuni. Cgb protein plays a role in detoxification of NO and related compounds. NssR (Nitrosative stress sensing Regulator - Cj0466) controls the expression of a nitrosative stress-responsive regulon in Campylobacter jejuni which includes ctb (Cj0465c) and cgb (Cj1586). Putative not added to product function. Functional classification - Energy metabolism - Electron transport%3B~PMID:16045618%2C PMID:15292134%2C PMID:16339953%2CPMID:16681372;gbkey=CDS;gene=cgb;inference=protein motif:Pfam:PF00042;locus_tag=Cj1586;product=single domain haemoglobin;protein_id=CAL35683.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1517579	1517956	.	+	.	ID=id-Cj1586;Note=HMMPfam hit to PF00042%2C Globin%2C score 3.3e-12;gbkey=misc_feature;gene=cgb;inference=protein motif:Pfam:PF00042;locus_tag=Cj1586
gi|15791399|ref|NC_002163.1|	EMBL	gene	1518009	1519640	.	-	.	ID=gene-Cj1587c;Name=Cj1587c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1587c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1518009	1519640	.	-	0	ID=cds-CAL35684.1;Parent=gene-Cj1587c;Dbxref=EnsemblGenomes-Gn:Cj1587c,EnsemblGenomes-Tr:CAL35684,GOA:Q0P841,InterPro:IPR001140,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR005898,InterPro:IPR011527,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P841,NCBI_GP:CAL35684.1;Name=CAL35684.1;Note=Original (2000) note: Cj1587c%2C probable ABC transporter%2C len: 543 aa%3B similar to e.g. YOJI_ECOLI hypothetical ABC transporter ATP-binding protein (547 aa)%2Cfasta scores%3B opt: 1391 z-score: 1550.2 E(): 0%2C 39.0%25 identity in 546 aa overlap. No Hp ortholog. N-terminus contains several probable transmembrane domains%2CC-terminus contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Pfam domain PF00664 ABC transporter transmembrane region identified within CDS. Further support given to product function. Some characterisation work carried out within Escherichia coli (PMID:15866933). Putative kept within product function. Functional classification - Transport/binding proteins -Other%3B~PMID:15866933;gbkey=CDS;inference=protein motif:Prosite:PS00017;locus_tag=Cj1587c;product=putative ABC transporter;protein_id=CAL35684.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1519161	1519229	.	-	.	ID=id-Cj1587c;Note=3 probable transmembrane helices predicted for Cj1587c by TMHMM2.0 at aa 13-35%2C 50-72 and 138-160;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1587c;part=1/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1519425	1519493	.	-	.	ID=id-Cj1587c;Note=3 probable transmembrane helices predicted for Cj1587c by TMHMM2.0 at aa 13-35%2C 50-72 and 138-160;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1587c;part=2/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1519536	1519604	.	-	.	ID=id-Cj1587c;Note=3 probable transmembrane helices predicted for Cj1587c by TMHMM2.0 at aa 13-35%2C 50-72 and 138-160;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1587c;part=3/3
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1518078	1518605	.	-	.	ID=id-Cj1587c-2;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 6.3e-33;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj1587c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1518561	1518584	.	-	.	ID=id-Cj1587c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1587c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1518810	1519619	.	-	.	ID=id-Cj1587c-4;Note=HMMPfam hit to PF00664%2C ABC transporter transmembrane region%2C score 0.00019;gbkey=misc_feature;inference=protein motif:Pfam:PF00664;locus_tag=Cj1587c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1519690	1520985	.	-	.	ID=gene-Cj1588c;Name=Cj1588c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1588c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1519690	1520985	.	-	0	ID=cds-CAL35685.1;Parent=gene-Cj1588c;Dbxref=EnsemblGenomes-Gn:Cj1588c,EnsemblGenomes-Tr:CAL35685,GOA:Q0P840,InterPro:IPR005829,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0P840,NCBI_GP:CAL35685.1;Name=CAL35685.1;Note=Original (2000) note: Cj1588c%2C probable transmembrane transport protein%2C len: 431 aa%3B similar to e.g. YHJE_ECOLI hypothetical metabolite transport protein (440 aa)%2C fasta scores%3B opt: 682 z-score: 771.4 E(): 0%2C28.9%25 identity in 422 aa overlap%2C and PROP_ECOLI proline/betaine transporter (proline porter II) (500 aa)%2Cfasta scores%3B opt: 655 z-score: 740.4 E(): 0%2C 30.1%25 identity in 415 aa overlap. No Hp ortholog. Contains PS00217 Sugar transport proteins signature 2%2C and Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporters%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Also%2Ctwelve probable transmembrane helices predicted by TMHMM2.0. Not specifically characterised yet with acceptable identity score. Product function modified based on motif match. Putative kept within product function. Functional classification - Transport/binding proteins -Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;product=putative MFS (Major Facilitator Superfamily) transport protein;protein_id=CAL35685.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1519708	1519776	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=1/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1519819	1519887	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=2/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1519924	1519992	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=3/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1520005	1520073	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=4/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1520086	1520154	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=5/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1520197	1520265	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=6/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1520371	1520439	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=7/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1520467	1520535	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=8/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1520569	1520637	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=9/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1520665	1520733	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=10/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1520770	1520838	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=11/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1520881	1520949	.	-	.	ID=id-Cj1588c;Note=12 probable transmembrane helices predicted for Cj1588c by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-107%2C 117-139%2C151-173%2C 183-205%2C 241-263%2C 278-300%2C 305-327%2C 332-354%2C367-389 and 404-426;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1588c;part=12/12
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1519696	1520949	.	-	.	ID=id-Cj1588c-2;Note=HMMPfam hit to PF00083%2C Sugar (and other) transporter%2C score 2e-19;gbkey=misc_feature;inference=protein motif:Pfam:PF00083;locus_tag=Cj1588c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1519804	1520913	.	-	.	ID=id-Cj1588c-3;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 4.4e-21;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj1588c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1520221	1520253	.	-	.	ID=id-Cj1588c-4;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1588c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1520539	1520616	.	-	.	ID=id-Cj1588c-5;Note=PS00217 Sugar transport proteins signature 2;gbkey=misc_feature;inference=protein motif:Prosite:PS00217;locus_tag=Cj1588c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1521072	1521869	.	+	.	ID=gene-Cj1589;Name=Cj1589;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1589
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1521072	1521869	.	+	0	ID=cds-CAL35686.1;Parent=gene-Cj1589;Dbxref=EnsemblGenomes-Gn:Cj1589,EnsemblGenomes-Tr:CAL35686,InterPro:IPR001279,UniProtKB/TrEMBL:Q0P839,NCBI_GP:CAL35686.1;Name=CAL35686.1;Note=Original (2000) note: Cj1589%2C unknown%2C len: 265 aa%3B some similarity to TR:O34910 (EMBL:AF027868) Bacillus subtilis YOBT (233 aa)%2C fasta scores%3B opt: 178 z-score: 211.5 E(): 0.00019%2C 27.6%25 identity in 203 aa overlap. No Hp match. Contains Pfam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF00753;locus_tag=Cj1589;product=conserved hypothetical protein Cj1189;protein_id=CAL35686.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1521279	1521836	.	+	.	ID=id-Cj1589;Note=HMMPfam hit to PF00753%2C Metallo-beta-lactamase superfamily%2C score 1.1e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF00753;locus_tag=Cj1589
gi|15791399|ref|NC_002163.1|	EMBL	gene	1521957	1522175	.	+	.	ID=gene-Cj1590;Name=infA;gbkey=Gene;gene=infA;gene_biotype=protein_coding;locus_tag=Cj1590
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1521957	1522175	.	+	0	ID=cds-CAL35687.1;Parent=gene-Cj1590;Dbxref=EnsemblGenomes-Gn:Cj1590,EnsemblGenomes-Tr:CAL35687,GOA:Q9PM85,InterPro:IPR004368,InterPro:IPR006196,InterPro:IPR012340,InterPro:IPR022967,NCBI_GP:CAL35687.1;Name=CAL35687.1;Note=Original (2000) note: Cj1590%2C infA%2C probable translation initiation factor IF-1%2C len: 72 aa%3B highly similar to many e.g. IF1_ECOLI translation initiation factor IF-1 (71 aa)%2C fasta scores%3B opt: 313 z-score: 457.0 E(): 3.9e-18%2C 66.2%25 identity in 71 aa overlap. 81.9%25 identity to HP1298. Contains Pfam match to entry PF00575 S1%2C S1 RNA binding domain%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Protein translation and modification%3B~PMID:376343%2C PMID:1909328;gbkey=CDS;gene=infA;inference=protein motif:Pfam:PF00575;locus_tag=Cj1590;product=translation initiation factor IF-1;protein_id=CAL35687.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1521960	1522172	.	+	.	ID=id-Cj1590;Note=HMMPfam hit to PF00575%2C S1 RNA binding domain%2Cscore 1.1e-10;gbkey=misc_feature;gene=infA;inference=protein motif:Pfam:PF00575;locus_tag=Cj1590
gi|15791399|ref|NC_002163.1|	EMBL	gene	1522347	1522460	.	+	.	ID=gene-Cj1591;Name=rpmJ;gbkey=Gene;gene=rpmJ;gene_biotype=protein_coding;locus_tag=Cj1591
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1522347	1522460	.	+	0	ID=cds-CAL35688.1;Parent=gene-Cj1591;Dbxref=EnsemblGenomes-Gn:Cj1591,EnsemblGenomes-Tr:CAL35688,GOA:Q9PM84,InterPro:IPR000473,NCBI_GP:CAL35688.1;Name=CAL35688.1;Note=Original (2000) note: Cj1591%2C rpmJ%2C probable 50S ribosomal protein L36%2C len: 37 aa%3B highly similar to many e.g. RL36_BACSU 50S ribosomal protein L36 (37 aa)%2C fasta scores%3B opt: 221 z-score: 387.9 E(): 2.7e-14%2C 78.4%25 identity in 37 aa overlap. 75.7%25 identity to HP1297. Contains PS00828 Ribosomal protein L36 signature%2C and Pfam match to entry PF00444 L36%2C Ribosomal protein L36%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:2496109;gbkey=CDS;gene=rpmJ;inference=protein motif:Prosite:PS00828;locus_tag=Cj1591;product=50S ribosomal protein L36;protein_id=CAL35688.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1522347	1522457	.	+	.	ID=id-Cj1591;Note=HMMPfam hit to PF00444%2C Ribosomal protein L36%2Cscore 7.5e-17;gbkey=misc_feature;gene=rpmJ;inference=protein motif:Pfam:PF00444;locus_tag=Cj1591
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1522377	1522454	.	+	.	ID=id-Cj1591-2;Note=PS00828 Ribosomal protein L36 signature;gbkey=misc_feature;gene=rpmJ;inference=protein motif:Prosite:PS00828;locus_tag=Cj1591
gi|15791399|ref|NC_002163.1|	EMBL	gene	1522463	1522828	.	+	.	ID=gene-Cj1592;Name=rpsM;gbkey=Gene;gene=rpsM;gene_biotype=protein_coding;locus_tag=Cj1592
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1522463	1522828	.	+	0	ID=cds-CAL35689.1;Parent=gene-Cj1592;Dbxref=EnsemblGenomes-Gn:Cj1592,EnsemblGenomes-Tr:CAL35689,GOA:Q9PM83,InterPro:IPR001892,InterPro:IPR010979,InterPro:IPR018269,InterPro:IPR019980,InterPro:IPR027437,NCBI_GP:CAL35689.1;Name=CAL35689.1;Note=Original (2000) note: Cj1592%2C rpsM%2C probable 30S ribosomal protein S13%2C len: 121 aa%3B highly similar to many e.g. RS13_BACSU 30S ribosomal protein S13 (120 aa)%2C fasta scores%3B opt: 451 z-score: 571.4 E(): 1.7e-24%2C 55.5%25 identity in 119 aa overlap. 78.3%25 identity to HP1296. Contains PS00646 Ribosomal protein S13 signature%2C and Pfam match to entry PF00416 S13%2C Ribosomal protein S13%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:3093467%2C PMID:6806564%2C PMID:2496109;gbkey=CDS;gene=rpsM;inference=protein motif:Prosite:PS00646;locus_tag=Cj1592;product=30S ribosomal protein S13;protein_id=CAL35689.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1522469	1522789	.	+	.	ID=id-Cj1592;Note=HMMPfam hit to PF00416%2C Ribosomal protein S13/S18%2Cscore 1.5e-50;gbkey=misc_feature;gene=rpsM;inference=protein motif:Pfam:PF00416;locus_tag=Cj1592
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1522724	1522765	.	+	.	ID=id-Cj1592-2;Note=PS00646 Ribosomal protein S13 signature;gbkey=misc_feature;gene=rpsM;inference=protein motif:Prosite:PS00646;locus_tag=Cj1592
gi|15791399|ref|NC_002163.1|	EMBL	gene	1522838	1523230	.	+	.	ID=gene-Cj1593;Name=rpsK;gbkey=Gene;gene=rpsK;gene_biotype=protein_coding;locus_tag=Cj1593
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1522838	1523230	.	+	0	ID=cds-CAL35690.1;Parent=gene-Cj1593;Dbxref=EnsemblGenomes-Gn:Cj1593,EnsemblGenomes-Tr:CAL35690,GOA:Q9PM82,InterPro:IPR001971,InterPro:IPR018102,InterPro:IPR019981,NCBI_GP:CAL35690.1;Name=CAL35690.1;Note=Original (2000) note: Cj1593%2C rpsK%2C probable 30S ribosomal protein S11%2C len: 130 aa%3B highly similar to many e.g. RS11_BACSU 30S ribosomal protein S11 (131 aa)%2C fasta scores%3B opt: 526 z-score: 626.8 E(): 1.4e-27%2C 58.1%25 identity in 129 aa overlap. 84.0%25 identity to HP1295. Contains Pfam match to entry PF00411 S11%2C Ribosomal protein S11%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:2496109%2C PMID:3093467;gbkey=CDS;gene=rpsK;inference=protein motif:Pfam:PF00411;locus_tag=Cj1593;product=30S ribosomal protein S11;protein_id=CAL35690.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1522892	1523224	.	+	.	ID=id-Cj1593;Note=HMMPfam hit to PF00411%2C Ribosomal protein S11%2Cscore 6.2e-56;gbkey=misc_feature;gene=rpsK;inference=protein motif:Pfam:PF00411;locus_tag=Cj1593
gi|15791399|ref|NC_002163.1|	EMBL	gene	1523258	1523884	.	+	.	ID=gene-Cj1594;Name=rpsD;gbkey=Gene;gene=rpsD;gene_biotype=protein_coding;locus_tag=Cj1594
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1523258	1523884	.	+	0	ID=cds-CAL35691.1;Parent=gene-Cj1594;Dbxref=EnsemblGenomes-Gn:Cj1594,EnsemblGenomes-Tr:CAL35691,GOA:Q9PM81,InterPro:IPR001912,InterPro:IPR002942,InterPro:IPR005709,InterPro:IPR018079,InterPro:IPR022801,NCBI_GP:CAL35691.1;Name=CAL35691.1;Note=Original (2000) note: Cj1594%2C rpsD%2C probable 30S ribosomal protein S4%2C len: 208 aa%3B highly similar to many e.g. RS4_ECOLI 30S ribosomal protein S4 (205 aa)%2C fasta scores%3B opt: 637 z-score: 756.2 E(): 0%2C 50.5%25 identity in 208 aa overlap. 76.4%25 identity to HP1294. Contains PS00632 Ribosomal protein S4 signature%2C and Pfam match to entry PF00163 S4%2C Ribosomal protein S4%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:4587210%2C PMID:1400226;gbkey=CDS;gene=rpsD;inference=protein motif:Prosite:PS00632;locus_tag=Cj1594;product=30S ribosomal protein S4;protein_id=CAL35691.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1523261	1523548	.	+	.	ID=id-Cj1594;Note=HMMPfam hit to PF00163%2C Ribosomal protein S4/S9 N-terminal domai%2C score 5.4e-25;gbkey=misc_feature;gene=rpsD;inference=protein motif:Pfam:PF00163;locus_tag=Cj1594
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1523543	1523617	.	+	.	ID=id-Cj1594-2;Note=PS00632 Ribosomal protein S4 signature;gbkey=misc_feature;gene=rpsD;inference=protein motif:Prosite:PS00632;locus_tag=Cj1594
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1523549	1523692	.	+	.	ID=id-Cj1594-3;Note=HMMPfam hit to PF01479%2C S4 domain%2C score 1.3e-23;gbkey=misc_feature;gene=rpsD;inference=protein motif:Pfam:PF01479;locus_tag=Cj1594
gi|15791399|ref|NC_002163.1|	EMBL	gene	1523897	1524910	.	+	.	ID=gene-Cj1595;Name=rpoA;gbkey=Gene;gene=rpoA;gene_biotype=protein_coding;locus_tag=Cj1595
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1523897	1524910	.	+	0	ID=cds-CAL35692.1;Parent=gene-Cj1595;Dbxref=EnsemblGenomes-Gn:Cj1595,EnsemblGenomes-Tr:CAL35692,GOA:Q9PM80,InterPro:IPR009025,InterPro:IPR011260,InterPro:IPR011262,InterPro:IPR011263,InterPro:IPR011773,PDB:4NOI,NCBI_GP:CAL35692.1;Name=CAL35692.1;Note=Original (2000) note: Cj1595%2C rpoA%2C probable DNA-directed RNA polymerase alpha chain%2C len: 337 aa%3B similar to many e.g. RPOA_BACSU DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (314 aa)%2C fatsa scores%3B opt: 617 z-score: 679.5 E(): 1.6e-30%2C 35.5%25 identity in 304 aa overlap. 46.4%25 identity to HP1293. Contains Pfam match to entry PF01000 RNA_pol_A_bac%2CBacterial RNA polymerase%2C alpha chain%3B~Updated (2006) note: Characterised within Bacillus subtiils with acceptable identity score. Putative not added to product function. Functional classification - RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:2496109%2C PMID:1657891;gbkey=CDS;gene=rpoA;inference=protein motif:Pfam:PF01000;locus_tag=Cj1595;product=DNA-directed RNA polymerase alpha chain;protein_id=CAL35692.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1523957	1524583	.	+	.	ID=id-Cj1595;Note=HMMPfam hit to PF01193%2C RNA polymerase Rpb3/Rpb11 dimerisation%2C score 3.8e-15;gbkey=misc_feature;gene=rpoA;inference=protein motif:Pfam:PF01193;locus_tag=Cj1595
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1524071	1524418	.	+	.	ID=id-Cj1595-2;Note=HMMPfam hit to PF01000%2C RNA polymerase Rpb3/RpoA insert domain%2C score 4.9e-43;gbkey=misc_feature;gene=rpoA;inference=protein motif:Pfam:PF01000;locus_tag=Cj1595
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1524614	1524817	.	+	.	ID=id-Cj1595-3;Note=HMMPfam hit to PF03118%2C Bacterial RNA polymerase%2Calpha chain C%2C score 1.2e-22;gbkey=misc_feature;gene=rpoA;inference=protein motif:Pfam:PF03118;locus_tag=Cj1595
gi|15791399|ref|NC_002163.1|	EMBL	gene	1524914	1525267	.	+	.	ID=gene-Cj1596;Name=rplQ;gbkey=Gene;gene=rplQ;gene_biotype=protein_coding;locus_tag=Cj1596
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1524914	1525267	.	+	0	ID=cds-CAL35693.1;Parent=gene-Cj1596;Dbxref=EnsemblGenomes-Gn:Cj1596,EnsemblGenomes-Tr:CAL35693,GOA:Q0P832,InterPro:IPR000456,NCBI_GP:CAL35693.1;Name=CAL35693.1;Note=Original (2000) note: Cj1596%2C rplQ%2C probable 50S ribosomal protein L17%2C len: 117 aa%3B similar to many e.g. RL17_ECOLI 50S ribosomal protein L17 (127 aa)%2C fasta scores%3B opt: 346 z-score: 460.2 E(): 2.6e-18%2C 49.1%25 identity in 116 aa overlap. 73.3%25 identity to HP1292. Contains PS01167 Ribosomal protein L17 signature%2C and Pfam match to entry PF01196 Ribosomal_L17%2C Ribosomal protein L17%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:12081950;gbkey=CDS;gene=rplQ;inference=protein motif:Prosite:PS01167;locus_tag=Cj1596;product=50S ribosomal protein L17;protein_id=CAL35693.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1524971	1525261	.	+	.	ID=id-Cj1596;Note=HMMPfam hit to PF01196%2C Ribosomal protein L17%2Cscore 1.3e-53;gbkey=misc_feature;gene=rplQ;inference=protein motif:Pfam:PF01196;locus_tag=Cj1596
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1525013	1525081	.	+	.	ID=id-Cj1596-2;Note=PS01167 Ribosomal protein L17 signature;gbkey=misc_feature;gene=rplQ;inference=protein motif:Prosite:PS01167;locus_tag=Cj1596
gi|15791399|ref|NC_002163.1|	EMBL	gene	1525440	1526339	.	+	.	ID=gene-Cj1597;Name=hisG;gbkey=Gene;gene=hisG;gene_biotype=protein_coding;locus_tag=Cj1597
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1525440	1526339	.	+	0	ID=cds-CAL35694.1;Parent=gene-Cj1597;Dbxref=EnsemblGenomes-Gn:Cj1597,EnsemblGenomes-Tr:CAL35694,GOA:Q9PM78,InterPro:IPR001348,InterPro:IPR011322,InterPro:IPR013115,InterPro:IPR013820,InterPro:IPR015867,InterPro:IPR018198,InterPro:IPR020621,NCBI_GP:CAL35694.1;Name=CAL35694.1;Note=Original (2000) note: Cj1597%2C hisG%2C probable ATP phosphoribosyltransferase%2C len: 299 aa%3B highly similar to many e.g. HIS1_ECOLI ATP phosphoribosyltransferase (EC 2.4.2.17) (299 aa)%2C fasta scores%3B opt: 1339 z-score: 1553.6 E(): 0%2C 66.2%25 identity in 299 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF01634 ATP phosphoribosyltransferase identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Histidine%3B~PMID:14741209%2C PMID:11185885;gbkey=CDS;gene=hisG;inference=protein motif:Pfam:PF01634;locus_tag=Cj1597;product=ATP phosphoribosyltransferase;protein_id=CAL35694.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1525596	1526102	.	+	.	ID=id-Cj1597;Note=HMMPfam hit to PF01634%2C ATP phosphoribosyltransferase%2C score 4.3e-67;gbkey=misc_feature;gene=hisG;inference=protein motif:Pfam:PF01634;locus_tag=Cj1597
gi|15791399|ref|NC_002163.1|	EMBL	gene	1526347	1527633	.	+	.	ID=gene-Cj1598;Name=hisD;gbkey=Gene;gene=hisD;gene_biotype=protein_coding;locus_tag=Cj1598
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1526347	1527633	.	+	0	ID=cds-CAL35695.1;Parent=gene-Cj1598;Dbxref=EnsemblGenomes-Gn:Cj1598,EnsemblGenomes-Tr:CAL35695,GOA:Q9PM77,InterPro:IPR001692,InterPro:IPR012131,InterPro:IPR016161,InterPro:IPR022695,NCBI_GP:CAL35695.1;Name=CAL35695.1;Note=Original (2000) note: Cj1598%2C hisD%2C probable histidinol dehydrogenase%2C len: 428 aa%3B similar to many e.g. HISX_ECOLI histidinol dehydrogenase (EC 1.1.1.23) (433 aa)%2C fasta scores%3B opt: 1628 z-score: 1816.7 E(): 0%2C59.6%25 identity in 426 aa overlap. No Hp match. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00611 Histidinol dehydrogenase signature%2C and Pfam match to entry PF00815 Histidinol_dh%2C Histidinol dehydrogenase%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Histidine%3B~PMID:11842181%2C PMID:3305475;gbkey=CDS;gene=hisD;inference=protein motif:Prosite:PS00611;locus_tag=Cj1598;product=histidinol dehydrogenase;protein_id=CAL35695.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1526386	1527621	.	+	.	ID=id-Cj1598;Note=HMMPfam hit to PF00815%2C Histidinol dehydrogenase%2Cscore 1.1e-233;gbkey=misc_feature;gene=hisD;inference=protein motif:Pfam:PF00815;locus_tag=Cj1598
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1527025	1527123	.	+	.	ID=id-Cj1598-2;Note=PS00611 Histidinol dehydrogenase signature;gbkey=misc_feature;gene=hisD;inference=protein motif:Prosite:PS00611;locus_tag=Cj1598
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1527532	1527555	.	+	.	ID=id-Cj1598-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=hisD;inference=protein motif:Prosite:PS00017;locus_tag=Cj1598
gi|15791399|ref|NC_002163.1|	EMBL	gene	1527630	1528688	.	+	.	ID=gene-Cj1599;Name=hisB;gbkey=Gene;gene=hisB;gene_biotype=protein_coding;locus_tag=Cj1599
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1527630	1528688	.	+	0	ID=cds-CAL35696.1;Parent=gene-Cj1599;Dbxref=EnsemblGenomes-Gn:Cj1599,EnsemblGenomes-Tr:CAL35696,GOA:Q9PM76,InterPro:IPR000807,InterPro:IPR005954,InterPro:IPR006543,InterPro:IPR006549,InterPro:IPR013954,InterPro:IPR020565,InterPro:IPR020566,InterPro:IPR020568,InterPro:IPR023214,NCBI_GP:CAL35696.1;Name=CAL35696.1;Note=Original (2000) note: Cj1599%2C hisB%2C probable imidazoleglycerol-phosphate dehydratase/histidinol-phosphatase%2C len: 352 aa%3B similar to many e.g. HIS7_ECOLI histidine biosynthesis bifunctional protein HISB [includes: imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (IGPD)%3B histidinol-phosphatase (EC 3.1.3.15)] (355 aa)%2Cfasta scores%3B opt: 1385 z-score: 1653.6 E(): 0%2C 56.7%25 identity in 356 aa overlap. No Hp match. Contains PS00954 and PS00955 Imidazoleglycerol-phosphate dehydratase signatures 1 and 2%2C and Pfam match to entry PF00475 IGPD%2CImidazoleglycerol-phosphate dehydratase%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Histidine%3B~PMID:1095553%2C PMID:15042344;gbkey=CDS;gene=hisB;inference=protein motif:Prosite:PS00955;locus_tag=Cj1599;product=imidazoleglycerol-phosphate dehydratase/histidinol-phosphatase;protein_id=CAL35696.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1528206	1528634	.	+	.	ID=id-Cj1599;Note=HMMPfam hit to PF00475%2C Imidazoleglycerol-phosphate dehydratase%2C score 7e-88;gbkey=misc_feature;gene=hisB;inference=protein motif:Pfam:PF00475;locus_tag=Cj1599
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1528296	1528337	.	+	.	ID=id-Cj1599-2;Note=PS00954 Imidazoleglycerol-phosphate dehydratase signature 1;gbkey=misc_feature;gene=hisB;inference=protein motif:Prosite:PS00954;locus_tag=Cj1599
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1528575	1528613	.	+	.	ID=id-Cj1599-3;Note=PS00955 Imidazoleglycerol-phosphate dehydratase signature 2;gbkey=misc_feature;gene=hisB;inference=protein motif:Prosite:PS00955;locus_tag=Cj1599
gi|15791399|ref|NC_002163.1|	EMBL	gene	1528685	1529272	.	+	.	ID=gene-Cj1600;Name=hisH;gbkey=Gene;gene=hisH;gene_biotype=protein_coding;locus_tag=Cj1600
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1528685	1529272	.	+	0	ID=cds-CAL35697.1;Parent=gene-Cj1600;Dbxref=EnsemblGenomes-Gn:Cj1600,EnsemblGenomes-Tr:CAL35697,GOA:Q9PM75,InterPro:IPR010139,InterPro:IPR017926,InterPro:IPR029062,NCBI_GP:CAL35697.1;Name=CAL35697.1;Note=Original (2000) note: Cj1600%2C hisH%2C probable amidotransferase%2C len: 195 aa%3B similar to many e.g. HIS5_ECOLI amidotransferase HISH (EC 2.4.2.-) (196 aa)%2Cfasta scores%3B opt: 649 z-score: 793.0 E(): 0%2C 51.5%25 identity in 196 aa overlap. No Hp ortholog. Also similar to Cj1315c (39.2%25 identity in 199 aa overlap). Contains PS00442 Glutamine amidotransferases class-I active site%2Cand Pfam match to entry PF00117 GATase%2C Glutamine amidotransferases class-I%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Product function updated. Putative not added to product funciton. Functional classification - Amino acid biosynthesis -Histidine%3B~PMID:8494895%2C PMID:11551184;gbkey=CDS;gene=hisH;inference=protein motif:Prosite:PS00442;locus_tag=Cj1600;product=imidazole glycerol phosphate synthase subunit;protein_id=CAL35697.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1528694	1529266	.	+	.	ID=id-Cj1600;Note=HMMPfam hit to PF00117%2C Glutamine amidotransferase class-I%2C score 4.8e-34;gbkey=misc_feature;gene=hisH;inference=protein motif:Pfam:PF00117;locus_tag=Cj1600
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1528898	1528933	.	+	.	ID=id-Cj1600-2;Note=PS00442 Glutamine amidotransferases class-I active site;gbkey=misc_feature;gene=hisH;inference=protein motif:Prosite:PS00442;locus_tag=Cj1600
gi|15791399|ref|NC_002163.1|	EMBL	gene	1529269	1530000	.	+	.	ID=gene-Cj1601;Name=hisA;gbkey=Gene;gene=hisA;gene_biotype=protein_coding;locus_tag=Cj1601
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1529269	1530000	.	+	0	ID=cds-CAL35698.1;Parent=gene-Cj1601;Dbxref=EnsemblGenomes-Gn:Cj1601,EnsemblGenomes-Tr:CAL35698,GOA:Q9PM74,InterPro:IPR006062,InterPro:IPR006063,InterPro:IPR011060,InterPro:IPR013785,InterPro:IPR023016,PDB:4GJ1,NCBI_GP:CAL35698.1;Name=CAL35698.1;Note=Original (2000) note: Cj1601%2C hisA%2C probable phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase%2C len: 243 aa%3B similar to many e.g. HIS4_ECOLI phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) (245 aa)%2Cfasta scores%3B opt: 778 z-score: 919.6 E(): 0%2C 50.6%25 identity in 243 aa overlap. No Hp match. Contains fam match to entry PF00977 His_biosynth%2C Histidine biosynthesis protein%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product funciton. Functional classification -Amino acid biosynthesis - Histidine%3B~PMID:8494895%2C PMID:11551184;gbkey=CDS;gene=hisA;inference=protein motif:Pfam:PF00977;locus_tag=Cj1601;product=phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase;protein_id=CAL35698.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1529275	1529967	.	+	.	ID=id-Cj1601;Note=HMMPfam hit to PF00977%2C Histidine biosynthesis protein%2C score 2.9e-103;gbkey=misc_feature;gene=hisA;inference=protein motif:Pfam:PF00977;locus_tag=Cj1601
gi|15791399|ref|NC_002163.1|	EMBL	gene	1529985	1530941	.	+	.	ID=gene-Cj1602;Name=Cj1602;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1602
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1529985	1530941	.	+	0	ID=cds-CAL35699.1;Parent=gene-Cj1602;Dbxref=EnsemblGenomes-Gn:Cj1602,EnsemblGenomes-Tr:CAL35699,GOA:Q0P826,InterPro:IPR007759,UniProtKB/TrEMBL:Q0P826,NCBI_GP:CAL35699.1;Name=CAL35699.1;Note=Original (2000) note: Cj1602%2C unknown%2C len: 318 aa%3B 35.8%25 identity to HP0852%3B~Updated (2006) note: Pfam domain PF04373 Protein of unknown function (DUF511) identified within CDS. Conserved added to product function. Functional classification -Conserved hypothetical proteins%3B~PMID:11956101%2C PMID:15901688;gbkey=CDS;inference=protein motif:Pfam:PF04373;locus_tag=Cj1602;product=conserved hypothetical protein Cj1602;protein_id=CAL35699.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1529985	1530899	.	+	.	ID=id-Cj1602;Note=HMMPfam hit to PF04373%2C Protein of unknown function (DUF511)%2C score 2.8e-201;gbkey=misc_feature;inference=protein motif:Pfam:PF04373;locus_tag=Cj1602
gi|15791399|ref|NC_002163.1|	EMBL	gene	1530942	1531709	.	+	.	ID=gene-Cj1603;Name=hisF;gbkey=Gene;gene=hisF;gene_biotype=protein_coding;locus_tag=Cj1603
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1530942	1531709	.	+	0	ID=cds-CAL35700.1;Parent=gene-Cj1603;Dbxref=EnsemblGenomes-Gn:Cj1603,EnsemblGenomes-Tr:CAL35700,GOA:Q9PM72,InterPro:IPR004651,InterPro:IPR006062,InterPro:IPR011060,InterPro:IPR013785,NCBI_GP:CAL35700.1;Name=CAL35700.1;Note=Original (2000) note: Cj1603%2C hisF%2C probable cyclase (D-erythro-imidazole glycerol phosphate synthesis)%2C len: 255 aa%3B highly similar to many e.g. HIS6_ECOLI HISF protein (cyclase) (258 aa)%2C fast scores%3B opt: 1111 z-score: 1298.6 E(): 0%2C 65.8%25 identity in 257 aa overlap. No Hp match. Also similar to Cj1314c (36.5%25 identity in 255 aa overlap). Contains Pfam match to entry PF00977 His_biosynth%2C Histidine biosynthesis protein%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Product function updated. Putative not added to product funciton. Functional classification - Amino acid biosynthesis -Histidine%3B~PMID:11208798%2C PMID:8494895;gbkey=CDS;gene=hisF;inference=protein motif:Pfam:PF00977;locus_tag=Cj1603;product=imidazole glycerol phosphate synthase subunit;protein_id=CAL35700.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1530954	1531655	.	+	.	ID=id-Cj1603;Note=HMMPfam hit to PF00977%2C Histidine biosynthesis protein%2C score 2.6e-115;gbkey=misc_feature;gene=hisF;inference=protein motif:Pfam:PF00977;locus_tag=Cj1603
gi|15791399|ref|NC_002163.1|	EMBL	gene	1531711	1532334	.	+	.	ID=gene-Cj1604;Name=hisI;gbkey=Gene;gene=hisI;gene_biotype=protein_coding;locus_tag=Cj1604
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1531711	1532334	.	+	0	ID=cds-CAL35701.1;Parent=gene-Cj1604;Dbxref=EnsemblGenomes-Gn:Cj1604,EnsemblGenomes-Tr:CAL35701,GOA:Q9PM71,InterPro:IPR002496,InterPro:IPR008179,InterPro:IPR021130,InterPro:IPR023019,NCBI_GP:CAL35701.1;Name=CAL35701.1;Note=Original (2000) note: Cj1604%2C hisI%2C probable phosphoribosyl-AMP cyclohydrolase/ phosphoribosyl-ATP pyrophosphohydrolase%2C len: 207 aa%3B highly similar to many e.g. HIS2_ECOLI histidine biosynthesis bifunctional protein HisIE [includes: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)%3B phosphoribosyl-ATP pyrophosphohydrolase (EC 3.6.1.31)] (203 aa)%2C fasta scores%3B opt: 840 z-score: 1036.5 E(): 0%2C 63.4%25 identity in 205 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domains PF01502 Phosphoribosyl-AMP cyclohydrolase and PF01503 Phosphoribosyl-ATP pyrophosphohydrolase were identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Amino acid biosynthesis -Histidine;gbkey=CDS;gene=hisI;inference=protein motif:Pfam:PF01503;locus_tag=Cj1604;product=phosphoribosyl-AMP cyclohydrolase/ phosphoribosyl-ATP pyrophosphohydrolase;protein_id=CAL35701.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1531810	1532034	.	+	.	ID=id-Cj1604;Note=HMMPfam hit to PF01502%2C Phosphoribosyl-AMP cyclohydrolase%2C score 5.5e-43;gbkey=misc_feature;gene=hisI;inference=protein motif:Pfam:PF01502;locus_tag=Cj1604
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1532062	1532328	.	+	.	ID=id-Cj1604-2;Note=HMMPfam hit to PF01503%2C Phosphoribosyl-ATP pyrophosphohydrolase%2C score 2.6e-44;gbkey=misc_feature;gene=hisI;inference=protein motif:Pfam:PF01503;locus_tag=Cj1604
gi|15791399|ref|NC_002163.1|	EMBL	gene	1532359	1533519	.	-	.	ID=gene-Cj1605c;Name=dapD;gbkey=Gene;gene=dapD;gene_biotype=protein_coding;locus_tag=Cj1605c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1532359	1533519	.	-	0	ID=cds-CAL35702.1;Parent=gene-Cj1605c;Dbxref=EnsemblGenomes-Gn:Cj1605c,EnsemblGenomes-Tr:CAL35702,GOA:Q0P823,InterPro:IPR011004,InterPro:IPR026586,PDB:2RIJ,NCBI_GP:CAL35702.1;Name=CAL35702.1;Note=Updated (2006) note: Identity score with Escherichia coli was marginal. Putative kept within product function as sequence alignment was partial%3B~Original (2000) note: Cj1605c%2C dapD%2C possible 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase%2C len: 386 aa%3B simlar in N-terminus to e.g. TR:O69283 (EMBL:AJ004934) Corynebacterium glutamicum tetrahydrodipicolinate succinylase (EC 2.3.1.117) (230 aa)%2C fasta scores%3B opt: 587 z-score: 643.6 E(): 1.6e-28%2C 47.3%25 identity in 245 aa overlap%2C and weakly similar to DAPD_ECOLI 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase (EC 2.3.1.117) (274 aa)%2C fasta scores%3B opt: 190 z-score: 214.3 E(): 0.00013%2C 27.3%25 identity in 143 aa overlap. 48.5%25 identity to HP0626. Functional classification - Amino acid biosynthesis -Aspartate family;gbkey=CDS;gene=dapD;locus_tag=Cj1605c;product=putative 2%2C3%2C4%2C5-tetrahydropyridine-2-carboxylate N-succinyltransferase;protein_id=CAL35702.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1532758	1532790	.	-	.	ID=id-Cj1605c;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=dapD;inference=protein motif:Prosite:PS00013;locus_tag=Cj1605c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1533545	1534651	.	-	.	ID=gene-Cj1606c;Name=mrp;gbkey=Gene;gene=mrp;gene_biotype=protein_coding;locus_tag=Cj1606c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1533545	1534651	.	-	0	ID=cds-CAL35703.1;Parent=gene-Cj1606c;Dbxref=EnsemblGenomes-Gn:Cj1606c,EnsemblGenomes-Tr:CAL35703,InterPro:IPR002744,InterPro:IPR019591,InterPro:IPR025669,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P822,NCBI_GP:CAL35703.1;Name=CAL35703.1;Note=Original (2000) note: Cj1606c%2C mrp%2C probable ATP/GTP-binding protein (mrp protein homolog)%2C len: 368 aa%3B similar to many members of the MRP family e.g. MRP_ECOLI MRP protein (379 aa)%2C fasta scores%3B opt: 839 z-score: 921.1 E(): 0%2C 37.1%25 identity in 340 aa overlap. 50.1%25 identity to HP0207. Also similar to Cj0063c (31.4%25 identity in 159 aa overlap). Contains PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Pfam domain PF01883 Domain of unknown function DUF59 identified within CDS. Functional classification - Conserved hypothetical proteins;gbkey=CDS;gene=mrp;inference=protein motif:Prosite:PS00017;locus_tag=Cj1606c;product=putative ATP/GTP-binding protein (Mrp protein homolog);protein_id=CAL35703.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1534316	1534339	.	-	.	ID=id-Cj1606c;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=mrp;inference=protein motif:Prosite:PS00017;locus_tag=Cj1606c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1534430	1534651	.	-	.	ID=id-Cj1606c-2;Note=HMMPfam hit to PF01883%2C Domain of unknown function DUF59%2C score 2.9e-05;gbkey=misc_feature;gene=mrp;inference=protein motif:Pfam:PF01883;locus_tag=Cj1606c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1534774	1535889	.	+	.	ID=gene-Cj1607;Name=ispDF;gbkey=Gene;gene=ispDF;gene_biotype=protein_coding;locus_tag=Cj1607
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1534774	1535889	.	+	0	ID=cds-CAL35704.1;Parent=gene-Cj1607;Dbxref=EnsemblGenomes-Gn:Cj1607,EnsemblGenomes-Tr:CAL35704,GOA:Q9PM68,InterPro:IPR001228,InterPro:IPR003526,InterPro:IPR018294,InterPro:IPR020555,InterPro:IPR026596,InterPro:IPR029044,PDB:1W55,PDB:1W57,NCBI_GP:CAL35704.1;Name=CAL35704.1;Note=Original (2000) note: Cj1607%2C unknown%2C len: 371 aa%3B similar to hypothetical proteins e.g. YNR3_RHOCA (379 aa)%2Cfasta scores%3B opt: 439 z-score: 508.8 E(): 5.1e-21%2C 31.2%25 identity in 378 aa overlap. C-terminus is similar to e.g. YGBB_ECOLI (159 aa)%2C fasta scores%3B opt: 496 z-score: 579.9 E(): 5.6e-25%2C 53.5%25 identity in 144 aa overlap. 42.6%25 identity to HP1020. Contains Pfam match to entry PF01128 UPF0007%2C Uncharacterized protein family UPF0007%3B~Updated (2006) note: Prosite domains PS01295 ISPD%2C4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature and PS01350 ISPF%2C 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase signature were identified within CDS. Also%2C Pfam domain PF02542 YgbB family identified within CDS. Characterised within Campylobacter jejuni%2C so putative not added to product function. Functional classification - Misc%3B~PMID:15233799;gbkey=CDS;gene=ispDF;inference=protein motif:Prosite:PS01350;locus_tag=Cj1607;product=2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/ 2-C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase;protein_id=CAL35704.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1534783	1535373	.	+	.	ID=id-Cj1607;Note=HMMPfam hit to PF01128%2C Uncharacterized protein family UPF0007%2C score 1.3e-11;gbkey=misc_feature;gene=ispDF;inference=protein motif:Pfam:PF01128;locus_tag=Cj1607
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1535401	1535871	.	+	.	ID=id-Cj1607-2;Note=HMMPfam hit to PF02542%2C YgbB family%2C score 1.9e-73;gbkey=misc_feature;gene=ispDF;inference=protein motif:Pfam:PF02542;locus_tag=Cj1607
gi|15791399|ref|NC_002163.1|	EMBL	gene	1535886	1536773	.	+	.	ID=gene-Cj1608;Name=Cj1608;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1608
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1535886	1536773	.	+	0	ID=cds-CAL35705.1;Parent=gene-Cj1608;Dbxref=EnsemblGenomes-Gn:Cj1608,EnsemblGenomes-Tr:CAL35705,GOA:Q0P820,InterPro:IPR001789,InterPro:IPR011006,InterPro:IPR014483,UniProtKB/TrEMBL:Q0P820,NCBI_GP:CAL35705.1;Name=CAL35705.1;Note=Original (2000) note: Cj1608%2C possible two-component regulator%2C len: 295 aa%2C some similarity to regulatory components of tw-component systems e.g. TR:O87527 (EMBL:AF082668) Streptococcus pyogenes capsule synthesis regulator CSRR (228 aa)%2C fasta scores%3B opt: 170 z-score: 203.9 E(): 0.00049%2C 35.0%25 identity in 123 aa overlap%2C and BASR_ECOLI transcriptional regulatory protein (222 aa)%2C blastp scores%3B E %3D 1.6e-06 29%25 identity in 113 aa overlap. 33.8%25 identity to HP1021. Contains helix-turn-helix motif at aa 271-292 (Score 997%2C +2.58 SD). Also some similarity to Cj1024c (22.0%25 identity in 341 aa overlap)%3B~Updated (2006) note: PMID:15901688%3B~Updated (2006) note: Pfam domain PF00072 Response regulator receiver domain identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Literature search identified paper giving further information on product function. Functional classification - Signal transduction%3B~PMID:15901688;gbkey=CDS;inference=protein motif:Pfam:PF00072;locus_tag=Cj1608;product=putative two-component regulator;protein_id=CAL35705.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1535886	1536218	.	+	.	ID=id-Cj1608;Note=HMMPfam hit to PF00072%2C Response regulator receiver domain%2C score 8.9e-05;gbkey=misc_feature;inference=protein motif:Pfam:PF00072;locus_tag=Cj1608
gi|15791399|ref|NC_002163.1|	EMBL	gene	1536751	1537911	.	+	.	ID=gene-Cj1609;Name=Cj1609;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1609
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1536751	1537911	.	+	0	ID=cds-CAL35706.1;Parent=gene-Cj1609;Dbxref=EnsemblGenomes-Gn:Cj1609,EnsemblGenomes-Tr:CAL35706,GOA:Q0P819,InterPro:IPR014729,InterPro:IPR015947,InterPro:IPR024951,UniProtKB/TrEMBL:Q0P819,NCBI_GP:CAL35706.1;Name=CAL35706.1;Note=Original (2000) note: Cj1609%2C possible sulfate adenylyltransferase%2C len: 386 aa%3B similar to e.g. TR:O34764 (EMBL:) BAcillus subtilis putative sulfate adenylyltransferase (382 aa)%2C fasta scores%3B opt: 360 z-score: 414.1 E(): 9.6e-16%2C 23.4%25 identity in 351 aa overlap%2C and TR:O66036 (EMBL:U84759) Chromatium vinosum sulfate adenylyltransferase (EC 2.7.7.4) (397 aa)%2C fasta scores%3B opt: 273 z-score: 315.2 E(): 3.1e-10%2C 21.8%25 identity in 357 aa overlap. No Hp match%3B~Updated (2006) note: No specific characterisation with acceptable identity score carried out yet. Putative kept within product function. Functional classification -Central intermediary metabolism - Sulphur metabolism;gbkey=CDS;locus_tag=Cj1609;product=putative sulfate adenylyltransferase;protein_id=CAL35706.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1537916	1538416	.	+	.	ID=gene-Cj1610;Name=pgpA;gbkey=Gene;gene=pgpA;gene_biotype=protein_coding;locus_tag=Cj1610
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1537916	1538416	.	+	0	ID=cds-CAL35707.1;Parent=gene-Cj1610;Dbxref=EnsemblGenomes-Gn:Cj1610,EnsemblGenomes-Tr:CAL35707,GOA:Q0P818,InterPro:IPR007686,InterPro:IPR026037,InterPro:IPR027416,UniProtKB/TrEMBL:Q0P818,NCBI_GP:CAL35707.1;Name=CAL35707.1;Note=Original (2000) note: Cj1610%2C pgpA%2C probable phosphatidylglycerophosphatase%2C len: 166 aa%3B simlar to e.g. PGPA_ECOLI phosphatidylglycerophosphatase A (EC 3.1.3.27) (172 aa)%2C fasta scores%3B opt: 238 z-score: 319.5 E(): 1.8e-10%2C 33.3%25 identity in 135 aa overlap. 47.1%25 identity to HP0737%3B~Updated (2006) note: Three probable transmembrane helices predicted by TMHMM2.0. Some characterisation work carried out within Escherichia coli%2C however%2C identity score was marginal. Sequence alignment was only partial. Putative kept within product function. Functional classification - Synthesis and modification of macromolecules - Phospholipids%3B~PMID:2846510%2C PMID:1309518;gbkey=CDS;gene=pgpA;inference=protein motif:TMHMM:2.0;locus_tag=Cj1610;product=putative phosphatidylglycerophosphatase;protein_id=CAL35707.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1537916	1538359	.	+	.	ID=id-Cj1610;Note=HMMPfam hit to PF04608%2CPhosphatidylglycerophosphatase A%2C score 2.9e-86;gbkey=misc_feature;gene=pgpA;inference=protein motif:Pfam:PF04608;locus_tag=Cj1610
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1537973	1538077	.	+	.	ID=id-Cj1610-2;Note=3 probable transmembrane helices predicted for Cj1610 by TMHMM2.0 at aa 20-54%2C 80-102 and 136-158;gbkey=misc_feature;gene=pgpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1610;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1538153	1538221	.	+	.	ID=id-Cj1610-2;Note=3 probable transmembrane helices predicted for Cj1610 by TMHMM2.0 at aa 20-54%2C 80-102 and 136-158;gbkey=misc_feature;gene=pgpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1610;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1538321	1538389	.	+	.	ID=id-Cj1610-2;Note=3 probable transmembrane helices predicted for Cj1610 by TMHMM2.0 at aa 20-54%2C 80-102 and 136-158;gbkey=misc_feature;gene=pgpA;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1610;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1538495	1538758	.	+	.	ID=gene-Cj1611;Name=rpsT;gbkey=Gene;gene=rpsT;gene_biotype=protein_coding;locus_tag=Cj1611
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1538495	1538758	.	+	0	ID=cds-CAL35708.1;Parent=gene-Cj1611;Dbxref=EnsemblGenomes-Gn:Cj1611,EnsemblGenomes-Tr:CAL35708,GOA:Q9PM64,InterPro:IPR002583,NCBI_GP:CAL35708.1;Name=CAL35708.1;Note=Original (2000) note: Cj1611%2C rpsT%2C probable 30S ribosomal protein S20%2C len: 87 aa%3B similar to many e.g. RS20_ECOLI 30S ribosomal protein S20 (86 aa)%2C fasta scores%3B opt: 155 z-score: 226.3 E(): 2.8e-05%2C 33.7%25 identity in 86 aa overlap. 66.7%25 identity to HP0076%3B~Updated (2006) note: Pfam domain PF01649 Ribosomal protein S20 identified within CDS. Further support given to product function. Characterised within Escherichia coli with marginal identity score. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:16272117%2C PMID:786731;gbkey=CDS;gene=rpsT;inference=protein motif:Pfam:PF01649;locus_tag=Cj1611;product=30S ribosomal protein S20;protein_id=CAL35708.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1538498	1538749	.	+	.	ID=id-Cj1611;Note=HMMPfam hit to PF01649%2C Ribosomal protein S20%2Cscore 1.5e-27;gbkey=misc_feature;gene=rpsT;inference=protein motif:Pfam:PF01649;locus_tag=Cj1611
gi|15791399|ref|NC_002163.1|	EMBL	gene	1538777	1539844	.	+	.	ID=gene-Cj1612;Name=prfA;gbkey=Gene;gene=prfA;gene_biotype=protein_coding;locus_tag=Cj1612
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1538777	1539844	.	+	0	ID=cds-CAL35709.1;Parent=gene-Cj1612;Dbxref=EnsemblGenomes-Gn:Cj1612,EnsemblGenomes-Tr:CAL35709,GOA:Q9PM63,InterPro:IPR000352,InterPro:IPR004373,InterPro:IPR005139,InterPro:IPR014720,NCBI_GP:CAL35709.1;Name=CAL35709.1;Note=Original (2000) note: Cj1612%2C prfA%2C probable peptide chain release factor 1%2C len: 355 aa%3B highly similar to many e.g. RF1_ECOLI peptide chain release factor 1 (RF-1) (360 aa)%2C fasta scores%3B opt: 1275 z-score: 1374.1 E(): 0%2C 53.9%25 identity in 356 aa overlap. 67.0%25 identity to HP0077. Also similar to Cj1455 prfB (37.0%25 identity in 354 aa overlap). Contains PS00745 Prokaryotic-type class I peptide chain release factors signature%2C and Pfam match to entry PF00472 RF-1%2CProkaryotic-type class I peptide chain release factors%3B~Updated (2006) note: Characterised within Escherichia coil with acceptable identity score. Thus%2Cputative not added to product function. Functional classification - Protein translation and modification%3B~PMID:3889910;gbkey=CDS;gene=prfA;inference=protein motif:Prosite:PS00745;locus_tag=Cj1612;product=peptide chain release factor 1;protein_id=CAL35709.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1538954	1539301	.	+	.	ID=id-Cj1612;Note=HMMPfam hit to PF03462%2C PCRF domain%2C score 3.3e-64;gbkey=misc_feature;gene=prfA;inference=protein motif:Pfam:PF03462;locus_tag=Cj1612
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1539392	1539727	.	+	.	ID=id-Cj1612-2;Note=HMMPfam hit to PF00472%2C Peptidyl-tRNA hydrolase domain%2C score 3.8e-74;gbkey=misc_feature;gene=prfA;inference=protein motif:Pfam:PF00472;locus_tag=Cj1612
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1539446	1539496	.	+	.	ID=id-Cj1612-3;Note=PS00745 Prokaryotic-type class I peptide chain release factors signature;gbkey=misc_feature;gene=prfA;inference=protein motif:Prosite:PS00745;locus_tag=Cj1612
gi|15791399|ref|NC_002163.1|	EMBL	gene	1539858	1540613	.	-	.	ID=gene-Cj1613c;Name=Cj1613c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1613c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1539858	1540613	.	-	0	ID=cds-CAL35710.1;Parent=gene-Cj1613c;Dbxref=EnsemblGenomes-Gn:Cj1613c,EnsemblGenomes-Tr:CAL35710,GOA:Q0P815,InterPro:IPR011576,InterPro:IPR012349,InterPro:IPR014419,InterPro:IPR019595,InterPro:IPR026324,UniProtKB/TrEMBL:Q0P815,NCBI_GP:CAL35710.1;Name=CAL35710.1;Note=Original (2000) note: Cj1613c%2C unknown%2C len: 251 aa%3B similar to hypothetical proteins e.g. Y854_HAEIN hypothetical protein HI0854 (253 aa)%2C fasta scores%3B opt: 827 z-score: 991.6 E(): 0%2C 48.4%25 identity in 248 aa overlap. 56.1%25 identity to HP0318%3B~Updated (2006) note: Pfam domain PF01243 Pyridoxamine 5'-phosphate oxidase identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Literature search identified paper (PMID:15632442) giving further clues to product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Pyridoxine%3B~PMID:15632442%2C PMID:12686112;gbkey=CDS;inference=protein motif:Pfam:PF01243;locus_tag=Cj1613c;product=putative pyridoxamine 5'-phosphate oxidase;protein_id=CAL35710.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1540074	1540355	.	-	.	ID=id-Cj1613c;Note=HMMPfam hit to PF01243%2C Pyridoxamine 5'-phosphate oxidase%2C score 1.5e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF01243;locus_tag=Cj1613c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1540807	1542936	.	+	.	ID=gene-Cj1614;Name=chuA;gbkey=Gene;gene=chuA;gene_biotype=protein_coding;locus_tag=Cj1614
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1540807	1542936	.	+	0	ID=cds-CAL35711.1;Parent=gene-Cj1614;Dbxref=EnsemblGenomes-Gn:Cj1614,EnsemblGenomes-Tr:CAL35711,GOA:Q0P814,InterPro:IPR000531,InterPro:IPR012910,UniProtKB/TrEMBL:Q0P814,NCBI_GP:CAL35711.1;Name=CAL35711.1;Note=Original (2000) note: Cj1614%2C chuA%2C haemin uptake system outer membrane receptor%2C len: 709 aa%3B mutants are unable to grow on haemin - see van Vliet et al%2C J. Bact 180%2C 5921-5298 (1998). Similar to TR:O85161 (EMBL:AF047484) Vibrio vulnificus heme receptor (712 aa)%2Cfasta scores%3B opt: 270 z-score: 302.6 E(): 1.6e-09%2C 22.9%25 identity in 750 aa overlap%2C and TR:Q56644 (EMBL:L27149) Vibrio cholerae heme receptor (693 aa)%2C fast scores%3B opt: 242 z-score: 271.3 E(): 8.6e-08%2C 23.0%25 identity in 744 aa overlap. 21.6%25 identity to HP0807. Also similar to Cj0755 (23.6%25 identity in 770 aa overlap)%2C and Cj0444 (32.1%25 identity in 190 aa overlap). Contains Pfam match to entry PF00593 TonB_boxC%2C TonB dependant receptor C-terminal region%3B~Updated (2006) note: Characterisation work within Campylobacter jejuni. Putative not added to product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:9157252%2C PMID:9765558;gbkey=CDS;gene=chuA;inference=protein motif:Pfam:PF00593;locus_tag=Cj1614;product=haemin uptake system outer membrane receptor;protein_id=CAL35711.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1540939	1541268	.	+	.	ID=id-Cj1614;Note=HMMPfam hit to PF07715%2C TonB-dependent Receptor Plug Domain%2C score 2e-14;gbkey=misc_feature;gene=chuA;inference=protein motif:Pfam:PF07715;locus_tag=Cj1614
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1542166	1542933	.	+	.	ID=id-Cj1614-2;Note=HMMPfam hit to PF00593%2C TonB dependent receptor%2Cscore 3.8e-21;gbkey=misc_feature;gene=chuA;inference=protein motif:Pfam:PF00593;locus_tag=Cj1614
gi|15791399|ref|NC_002163.1|	EMBL	gene	1542911	1543897	.	+	.	ID=gene-Cj1615;Name=chuB;gbkey=Gene;gene=chuB;gene_biotype=protein_coding;locus_tag=Cj1615
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1542911	1543897	.	+	0	ID=cds-CAL35712.1;Parent=gene-Cj1615;Dbxref=EnsemblGenomes-Gn:Cj1615,EnsemblGenomes-Tr:CAL35712,GOA:Q0P813,InterPro:IPR000522,InterPro:IPR029022,UniProtKB/TrEMBL:Q0P813,NCBI_GP:CAL35712.1;Name=CAL35712.1;Note=Original (2000) note: Cj1615%2C chuB%2C probable haemin uptake system permease protein%2C len: 328 aa%3B similar to e.g. FHUB_BACSU ferrichrome transport permease protein FHUB (384 aa)%2C fasta scores%3B opt: 505 z-score: 606.7 E(): 1.8e-26%2C 29.5%25 identity in 336 aa overlap. 31.2%25 identity to HP0889. Contains Pfam match to entry PF01032 FecCD_family%2C FecCD transport family. Predicted function is based on apparent co-transcription with Cj1614 chuA%3B~Updated (2006) note: Nine probable transmembrane helices predicted by TMHMM2.0. Yet to be specifically characterised with acceptable identity score. Putative kept within product function. Functional classification -Transport/binding proteins - Cations%3B~PMID:9765558;gbkey=CDS;gene=chuB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1615;product=putative haemin uptake system permease protein;protein_id=CAL35712.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1542944	1543003	.	+	.	ID=id-Cj1615;Note=9 probable transmembrane helices predicted for Cj1615 by TMHMM2.0 at aa 12-31%2C 63-85%2C 92-110%2C 115-137%2C144-166%2C 186-205%2C 236-258%2C 273-290 and 297-319;gbkey=misc_feature;gene=chuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1615;part=1/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1543097	1543165	.	+	.	ID=id-Cj1615;Note=9 probable transmembrane helices predicted for Cj1615 by TMHMM2.0 at aa 12-31%2C 63-85%2C 92-110%2C 115-137%2C144-166%2C 186-205%2C 236-258%2C 273-290 and 297-319;gbkey=misc_feature;gene=chuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1615;part=2/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1543184	1543240	.	+	.	ID=id-Cj1615;Note=9 probable transmembrane helices predicted for Cj1615 by TMHMM2.0 at aa 12-31%2C 63-85%2C 92-110%2C 115-137%2C144-166%2C 186-205%2C 236-258%2C 273-290 and 297-319;gbkey=misc_feature;gene=chuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1615;part=3/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1543253	1543321	.	+	.	ID=id-Cj1615;Note=9 probable transmembrane helices predicted for Cj1615 by TMHMM2.0 at aa 12-31%2C 63-85%2C 92-110%2C 115-137%2C144-166%2C 186-205%2C 236-258%2C 273-290 and 297-319;gbkey=misc_feature;gene=chuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1615;part=4/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1543340	1543408	.	+	.	ID=id-Cj1615;Note=9 probable transmembrane helices predicted for Cj1615 by TMHMM2.0 at aa 12-31%2C 63-85%2C 92-110%2C 115-137%2C144-166%2C 186-205%2C 236-258%2C 273-290 and 297-319;gbkey=misc_feature;gene=chuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1615;part=5/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1543466	1543525	.	+	.	ID=id-Cj1615;Note=9 probable transmembrane helices predicted for Cj1615 by TMHMM2.0 at aa 12-31%2C 63-85%2C 92-110%2C 115-137%2C144-166%2C 186-205%2C 236-258%2C 273-290 and 297-319;gbkey=misc_feature;gene=chuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1615;part=6/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1543616	1543684	.	+	.	ID=id-Cj1615;Note=9 probable transmembrane helices predicted for Cj1615 by TMHMM2.0 at aa 12-31%2C 63-85%2C 92-110%2C 115-137%2C144-166%2C 186-205%2C 236-258%2C 273-290 and 297-319;gbkey=misc_feature;gene=chuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1615;part=7/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1543727	1543780	.	+	.	ID=id-Cj1615;Note=9 probable transmembrane helices predicted for Cj1615 by TMHMM2.0 at aa 12-31%2C 63-85%2C 92-110%2C 115-137%2C144-166%2C 186-205%2C 236-258%2C 273-290 and 297-319;gbkey=misc_feature;gene=chuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1615;part=8/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1543799	1543867	.	+	.	ID=id-Cj1615;Note=9 probable transmembrane helices predicted for Cj1615 by TMHMM2.0 at aa 12-31%2C 63-85%2C 92-110%2C 115-137%2C144-166%2C 186-205%2C 236-258%2C 273-290 and 297-319;gbkey=misc_feature;gene=chuB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1615;part=9/9;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1543001	1543879	.	+	.	ID=id-Cj1615-2;Note=HMMPfam hit to PF01032%2C FecCD transport family%2Cscore 7.2e-77;gbkey=misc_feature;gene=chuB;inference=protein motif:Pfam:PF01032;locus_tag=Cj1615
gi|15791399|ref|NC_002163.1|	EMBL	gene	1543897	1544673	.	+	.	ID=gene-Cj1616;Name=chuC;gbkey=Gene;gene=chuC;gene_biotype=protein_coding;locus_tag=Cj1616
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1543897	1544673	.	+	0	ID=cds-CAL35713.1;Parent=gene-Cj1616;Dbxref=EnsemblGenomes-Gn:Cj1616,EnsemblGenomes-Tr:CAL35713,GOA:Q0P812,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P812,NCBI_GP:CAL35713.1;Name=CAL35713.1;Note=Original (2000) note: Cj1616%2C chuC%2C probable haemin uptake system ATP-binding protein%2C len: 258 aa%3B similar to e.g. FEPC_ECOLI ferric enterobactin transport ATP-binding protein (271 aa)%2C fasta scores%3B opt: 477 z-score: 544.5 E(): 5.2e-23%2C 32.6%25 identity in 242 aa overlap. 32.9%25 identity to HP0888. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters. Predicted function is based on apparent co-transcription with Cj1614 chuA%3B~Updated (2006) note: Yet to be specifically characterised with acceptable identity score. Putative kept within product function. Functional classification -Transport/binding proteins - Cations%3B~PMID:9765558;gbkey=CDS;gene=chuC;inference=protein motif:Prosite:PS00211;locus_tag=Cj1616;product=putative haemin uptake system ATP-binding protein;protein_id=CAL35713.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1543975	1544541	.	+	.	ID=id-Cj1616;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 2e-47;gbkey=misc_feature;gene=chuC;inference=protein motif:Pfam:PF00005;locus_tag=Cj1616
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1543996	1544019	.	+	.	ID=id-Cj1616-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=chuC;inference=protein motif:Prosite:PS00017;locus_tag=Cj1616
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1544311	1544355	.	+	.	ID=id-Cj1616-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=chuC;inference=protein motif:Prosite:PS00211;locus_tag=Cj1616
gi|15791399|ref|NC_002163.1|	EMBL	gene	1544670	1545476	.	+	.	ID=gene-Cj1617;Name=chuD;gbkey=Gene;gene=chuD;gene_biotype=protein_coding;locus_tag=Cj1617
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1544670	1545476	.	+	0	ID=cds-CAL35714.1;Parent=gene-Cj1617;Dbxref=EnsemblGenomes-Gn:Cj1617,EnsemblGenomes-Tr:CAL35714,InterPro:IPR002491,UniProtKB/TrEMBL:Q0P811,NCBI_GP:CAL35714.1;Name=CAL35714.1;Note=Original (2000) note: Cj1617%2C chuD%2C probable haemin uptake system periplasmic haemin-binding protein%2C len: 268 aa%3B similar to e.g. HMUT_YERPE hemin-binding periplasmic protein HMUT precursor (278 aa)%2C fasta scores%3B opt: 189 z-score: 223.7 E(): 3.9e-05%2C 23.9%25 identity in 230 aa overlap. No Hp match. Contains probable N-terminal signal sequence. Predicted function is based on apparent co-transcription with Cj1614 chuA%3B~Updated (2006) note: Pfam domain PF01497 Periplasmic binding protein identified within CDS. Further support given to product function. Yet to be specifically characterised with acceptable identity score. Putative kept within product function. Functional classification -Transport/binding proteins - Cations%3B~PMID:9765558;gbkey=CDS;gene=chuD;inference=protein motif:Pfam:PF01497;locus_tag=Cj1617;product=putative haemin uptake system periplasmic haemin-binding protein;protein_id=CAL35714.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1544715	1545398	.	+	.	ID=id-Cj1617;Note=HMMPfam hit to PF01497%2C Periplasmic binding protein%2C score 2e-31;gbkey=misc_feature;gene=chuD;inference=protein motif:Pfam:PF01497;locus_tag=Cj1617
gi|15791399|ref|NC_002163.1|	EMBL	gene	1545473	1546390	.	-	.	ID=gene-Cj1618c;Name=Cj1618c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1618c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1545473	1546390	.	-	0	ID=cds-CAL35715.1;Parent=gene-Cj1618c;Dbxref=EnsemblGenomes-Gn:Cj1618c,EnsemblGenomes-Tr:CAL35715,GOA:Q0P810,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR023885,UniProtKB/TrEMBL:Q0P810,NCBI_GP:CAL35715.1;Name=CAL35715.1;Note=Original (2000) note: Cj1618c%2C unknown%2C len: 305 aa%3B weak similarity to hypothetical proteins e.g. TR:Q59026 (EMBL:U67603) Methanococcus jannaschii hypothetical protein MJ1632 (255 aa)%2C fasta scores%3B opt: 138 z-score: 169.9 E(): 0.038%2C 25.8%25 identity in 256 aa overlap (contains predicted iron-sulfur cluster which is conserved in Cj1618c). 34.5%25 identity to HP0568%3B~Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF04055;locus_tag=Cj1618c;product=putative radical SAM domain protein;protein_id=CAL35715.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1545821	1546309	.	-	.	ID=id-Cj1618c;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 1.7e-06;gbkey=misc_feature;inference=protein motif:Pfam:PF04055;locus_tag=Cj1618c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1546496	1547755	.	+	.	ID=gene-Cj1619;Name=kgtP;gbkey=Gene;gene=kgtP;gene_biotype=protein_coding;locus_tag=Cj1619
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1546496	1547755	.	+	0	ID=cds-CAL35716.1;Parent=gene-Cj1619;Dbxref=EnsemblGenomes-Gn:Cj1619,EnsemblGenomes-Tr:CAL35716,GOA:Q0P809,InterPro:IPR005828,InterPro:IPR005829,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0P809,NCBI_GP:CAL35716.1;Name=CAL35716.1;Note=Original (2000) note: Cj1619%2C kgtP%2C probable alpha-ketoglutarate permease%2C len: 419 aa%3B similar to KGTP_ECOLI alpha-ketoglutarate permease (432 aa)%2C fasta scores%3B opt: 1348 z-score: 1575.2 E(): 0%2C 49.0%25 identity in 414 aa overlap. 49.9%25 identity to HP1091. Contains PS00217 Sugar transport proteins signature 2%2C and Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporters%3B~Updated (2006) note: PMID:2053984%3B~Updated (2006) note: Twelve probable transmembrane helices predicted by TMHMM2.0. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Transport/binding proteins - Carbohydrates%2C organic acids and alcohols%3B~PMID:2053984;gbkey=CDS;gene=kgtP;inference=protein motif:TMHMM:2.0;locus_tag=Cj1619;product=alpha-ketoglutarate permease;protein_id=CAL35716.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1546526	1547728	.	+	.	ID=id-Cj1619;Note=HMMPfam hit to PF00083%2C Sugar (and other) transporter%2C score 4e-45;gbkey=misc_feature;gene=kgtP;inference=protein motif:Pfam:PF00083;locus_tag=Cj1619
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1546532	1546600	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=1/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1546643	1546711	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=2/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1546748	1546801	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=3/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1546829	1546897	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=4/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1546958	1547017	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=5/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1547045	1547104	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=6/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1547183	1547251	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=7/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1547294	1547362	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=8/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1547387	1547446	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=9/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1547474	1547542	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=10/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1547576	1547644	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=11/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1547672	1547731	.	+	.	ID=id-Cj1619-2;Note=12 probable transmembrane helices predicted for Cj1619 by TMHMM2.0 at aa 13-35%2C 50-72%2C 85-102%2C 112-134%2C155-174%2C 184-203%2C 230-252%2C 267-289%2C 298-317%2C 327-349%2C361-383 and 393-412;gbkey=misc_feature;gene=kgtP;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1619;part=12/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1546541	1547644	.	+	.	ID=id-Cj1619-3;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 7.3e-21;gbkey=misc_feature;gene=kgtP;inference=protein motif:Pfam:PF07690;locus_tag=Cj1619
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1546859	1546936	.	+	.	ID=id-Cj1619-4;Note=PS00217 Sugar transport proteins signature 2;gbkey=misc_feature;gene=kgtP;inference=protein motif:Prosite:PS00217;locus_tag=Cj1619
gi|15791399|ref|NC_002163.1|	EMBL	gene	1547741	1548760	.	-	.	ID=gene-Cj1620c;Name=mutY;gbkey=Gene;gene=mutY;gene_biotype=protein_coding;locus_tag=Cj1620c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1547741	1548760	.	-	0	ID=cds-CAL35717.1;Parent=gene-Cj1620c;Dbxref=EnsemblGenomes-Gn:Cj1620c,EnsemblGenomes-Tr:CAL35717,GOA:Q0P808,InterPro:IPR000445,InterPro:IPR003265,InterPro:IPR003583,InterPro:IPR003651,InterPro:IPR004036,InterPro:IPR005760,InterPro:IPR011257,InterPro:IPR023170,UniProtKB/TrEMBL:Q0P808,NCBI_GP:CAL35717.1;Name=CAL35717.1;Note=Original (2000) note: Cj1620c%2C mutY%2C probable A/G-specific adenine glycosylase%2C len: 339 aa%3B similar to e.g. MUTY_ECOLI A/G-specific adenine glycosylase (EC 3.2.2.-) (350 aa)%2C blastp scores%3B E%3D 1.0e-41%2C 39%25 identity in 271 aa overlap. 47.6%25 identity to HP0142. Contains Pfam match to entry PF00730 Endonuclease_3%2C Endonuclease III%3B~Updated (2006) note: Pfam domain PF00730 HhH-GPD superfamily base excision DNA repair and PF00633 Helix-hairpin-helix motif were both identified within CDS. Further support given to product function. Characterisation work has been carried out within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:2197596%2C PMID:9846876%2C PMID:15456766;gbkey=CDS;gene=mutY;inference=protein motif:Pfam:PF00730;locus_tag=Cj1620c;product=A/G-specific adenine glycosylase;protein_id=CAL35717.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1548206	1548613	.	-	.	ID=id-Cj1620c;Note=HMMPfam hit to PF00730%2C HhH-GPD superfamily base excision DNA repair%2C score 2.5e-23;gbkey=misc_feature;gene=mutY;inference=protein motif:Pfam:PF00730;locus_tag=Cj1620c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1548329	1548418	.	-	.	ID=id-Cj1620c-2;Note=HMMPfam hit to PF00633%2C Helix-hairpin-helix motif%2Cscore 9.8e-07;gbkey=misc_feature;gene=mutY;inference=protein motif:Pfam:PF00633;locus_tag=Cj1620c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1548332	1548364	.	-	.	ID=id-Cj1620c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=mutY;inference=protein motif:Prosite:PS00013;locus_tag=Cj1620c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1548833	1549585	.	+	.	ID=gene-Cj1621;Name=Cj1621;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1621
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1548833	1549585	.	+	0	ID=cds-CAL35718.1;Parent=gene-Cj1621;Dbxref=EnsemblGenomes-Gn:Cj1621,EnsemblGenomes-Tr:CAL35718,UniProtKB/TrEMBL:Q0P807,NCBI_GP:CAL35718.1;Name=CAL35718.1;Note=Original (2000) note: Cj1621%2C possible periplasmic protein%2C len: 250 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1621;product=putative periplasmic protein;protein_id=CAL35718.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1548851	1548919	.	+	.	ID=id-Cj1621;Note=1 probable transmembrane helix predicted for Cj1621 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1621
gi|15791399|ref|NC_002163.1|	EMBL	gene	1549657	1549731	.	+	.	ID=gene-tRNA-Gly-3;Name=tRNA-Gly;gbkey=Gene;gene=tRNA-Gly;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1549657	1549731	.	+	.	ID=rna-tRNA-Gly-3;Parent=gene-tRNA-Gly-3;Note=tRNA Gly anticodon GCC%2C Cove score 88.10;gbkey=tRNA;gene=tRNA-Gly;product=tRNA-Gly
gi|15791399|ref|NC_002163.1|	EMBL	exon	1549657	1549731	.	+	.	ID=exon-tRNA-Gly-3-1;Parent=rna-tRNA-Gly-3;Note=tRNA Gly anticodon GCC%2C Cove score 88.10;gbkey=tRNA;gene=tRNA-Gly;product=tRNA-Gly
gi|15791399|ref|NC_002163.1|	EMBL	gene	1549741	1549829	.	+	.	ID=gene-tRNA-Leu-3;Name=tRNA-Leu;gbkey=Gene;gene=tRNA-Leu;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1549741	1549829	.	+	.	ID=rna-tRNA-Leu-3;Parent=gene-tRNA-Leu-3;Note=tRNA Leu anticodon TAA%2C Cove score 69.07;gbkey=tRNA;gene=tRNA-Leu;product=tRNA-Leu
gi|15791399|ref|NC_002163.1|	EMBL	exon	1549741	1549829	.	+	.	ID=exon-tRNA-Leu-3-1;Parent=rna-tRNA-Leu-3;Note=tRNA Leu anticodon TAA%2C Cove score 69.07;gbkey=tRNA;gene=tRNA-Leu;product=tRNA-Leu
gi|15791399|ref|NC_002163.1|	EMBL	gene	1549848	1549921	.	+	.	ID=gene-tRNA-Cys;Name=tRNA-Cys;gbkey=Gene;gene=tRNA-Cys;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1549848	1549921	.	+	.	ID=rna-tRNA-Cys;Parent=gene-tRNA-Cys;Note=tRNA Cys anticodon GCA%2C Cove score 72.19;gbkey=tRNA;gene=tRNA-Cys;product=tRNA-Cys
gi|15791399|ref|NC_002163.1|	EMBL	exon	1549848	1549921	.	+	.	ID=exon-tRNA-Cys-1;Parent=rna-tRNA-Cys;Note=tRNA Cys anticodon GCA%2C Cove score 72.19;gbkey=tRNA;gene=tRNA-Cys;product=tRNA-Cys
gi|15791399|ref|NC_002163.1|	EMBL	gene	1549943	1550030	.	+	.	ID=gene-tRNA-Ser-2;Name=tRNA-Ser;gbkey=Gene;gene=tRNA-Ser;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1549943	1550030	.	+	.	ID=rna-tRNA-Ser-2;Parent=gene-tRNA-Ser-2;Note=tRNA Ser anticodon TGA%2C Cove score 68.51;gbkey=tRNA;gene=tRNA-Ser;product=tRNA-Ser
gi|15791399|ref|NC_002163.1|	EMBL	exon	1549943	1550030	.	+	.	ID=exon-tRNA-Ser-2-1;Parent=rna-tRNA-Ser-2;Note=tRNA Ser anticodon TGA%2C Cove score 68.51;gbkey=tRNA;gene=tRNA-Ser;product=tRNA-Ser
gi|15791399|ref|NC_002163.1|	EMBL	gene	1550235	1551245	.	+	.	ID=gene-Cj1622;Name=ribD;gbkey=Gene;gene=ribD;gene_biotype=protein_coding;locus_tag=Cj1622
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1550235	1551245	.	+	0	ID=cds-CAL35719.1;Parent=gene-Cj1622;Dbxref=EnsemblGenomes-Gn:Cj1622,EnsemblGenomes-Tr:CAL35719,GOA:Q0P806,InterPro:IPR002125,InterPro:IPR004794,InterPro:IPR016193,InterPro:IPR024072,UniProtKB/TrEMBL:Q0P806,NCBI_GP:CAL35719.1;Name=CAL35719.1;Note=Original (2000) note: Cj1622%2C ribD%2C probable riboflavin-specific deaminase%2C len: 336 aa%3B similar to e.g. RIBD_ACTPL riboflavin-specific deaminase (EC 3.5.4.-) (410 aa)%2C fasta scores%3B opt: 320 z-score: 381.1 E(): 6.6e-14%2C 35.7%25 identity in 235 aa overlap%2C and RIBD_ECOLI riboflavin-specific deaminase (EC 3.5.4.-). (367 aa)%2C opt: 249 z-score: 298.4 E(): 2.7e-09%2C 28.4%25 identity in 282 aa overlap. 37.9%25 identity to %3B HP1505. Contains Pfam match to entry PF00383 dCMP_cyt_deam%2C Cytidine and deoxycytidylate deaminases zinc-binding region%3B~Updated (2006) note: Characterisation has been carried out within Helicobacter pylori and Escherichia coli and identity scores were acceptable. Product function modified to more specific function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Riboflavin%3B~PMID:11024263%2C PMID:9068650;gbkey=CDS;gene=ribD;inference=protein motif:Pfam:PF00383;locus_tag=Cj1622;product=riboflavin-specific deaminase/reductase;protein_id=CAL35719.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1550262	1550639	.	+	.	ID=id-Cj1622;Note=HMMPfam hit to PF00383%2C Cytidine and deoxycytidylate deaminase%2C score 4.9e-27;gbkey=misc_feature;gene=ribD;inference=protein motif:Pfam:PF00383;locus_tag=Cj1622
gi|15791399|ref|NC_002163.1|	EMBL	gene	1551226	1551747	.	+	.	ID=gene-Cj1623;Name=Cj1623;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1623
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1551226	1551747	.	+	0	ID=cds-CAL35720.1;Parent=gene-Cj1623;Dbxref=EnsemblGenomes-Gn:Cj1623,EnsemblGenomes-Tr:CAL35720,UniProtKB/TrEMBL:Q0P805,NCBI_GP:CAL35720.1;Name=CAL35720.1;Note=Original (2000) note: Cj1623%2C probable membrane protein%2C len: 173 aa%3B no Hp match%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Functional classification -Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1623;product=putative membrane protein;protein_id=CAL35720.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1551514	1551573	.	+	.	ID=id-Cj1623;Note=2 probable transmembrane helices predicted for Cj1623 by TMHMM2.0 at aa 97-116 and 121-143;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1623;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1551586	1551654	.	+	.	ID=id-Cj1623;Note=2 probable transmembrane helices predicted for Cj1623 by TMHMM2.0 at aa 97-116 and 121-143;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1623;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1551755	1553119	.	-	.	ID=gene-Cj1624c;Name=sdaA;gbkey=Gene;gene=sdaA;gene_biotype=protein_coding;locus_tag=Cj1624c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1551755	1553119	.	-	0	ID=cds-CAL35721.1;Parent=gene-Cj1624c;Dbxref=EnsemblGenomes-Gn:Cj1624c,EnsemblGenomes-Tr:CAL35721,GOA:Q0P804,InterPro:IPR004644,InterPro:IPR005130,InterPro:IPR005131,InterPro:IPR029009,UniProtKB/TrEMBL:Q0P804,NCBI_GP:CAL35721.1;Name=CAL35721.1;Note=Original (2000) note: Cj1624c%2C sdaA%2C probable L-serine dehydratase%2C len: 454 aa%3B similar to many e.g. SDHL_ECOLI L-serine dehydratase 1 (EC 4.2.1.13) (454 aa)%2Cfasta scores%3B opt: 1316 z-score: 1553.3 E(): 0%2C 46.0%25 identity in 465 aa overlap. 53.4%25 identity to HP0132%3B~Updated (2006) note: Pfam domains PF03313 Serine dehydratase alpha chain and PF03315 Serine dehydratase beta chain were identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Degradation - Amino acids%3B~PMID:8436113%2C PMID:14688104;gbkey=CDS;gene=sdaA;inference=protein motif:Pfam:PF03315;locus_tag=Cj1624c;product=L-serine dehydratase;protein_id=CAL35721.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1551773	1552600	.	-	.	ID=id-Cj1624c;Note=HMMPfam hit to PF03313%2C Serine dehydratase alpha chain%2C score 8.3e-143;gbkey=misc_feature;gene=sdaA;inference=protein motif:Pfam:PF03313;locus_tag=Cj1624c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1552643	1553116	.	-	.	ID=id-Cj1624c-2;Note=HMMPfam hit to PF03315%2C Serine dehydratase beta chain%2C score 8.4e-47;gbkey=misc_feature;gene=sdaA;inference=protein motif:Pfam:PF03315;locus_tag=Cj1624c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1553134	1554384	.	-	.	ID=gene-Cj1625c;Name=sdaC;gbkey=Gene;gene=sdaC;gene_biotype=protein_coding;locus_tag=Cj1625c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1553134	1554384	.	-	0	ID=cds-CAL35722.1;Parent=gene-Cj1625c;Dbxref=EnsemblGenomes-Gn:Cj1625c,EnsemblGenomes-Tr:CAL35722,UniProtKB/TrEMBL:Q0P803,NCBI_GP:CAL35722.1;Name=CAL35722.1;Note=Original (2000) note: Cj1625c%2C sdaC%2C probable serine transporter%2C len: 416 aa%3B similar to e.g. SDAC_ECOLI serine transporter (429 aa)%2C fasta scores%3B opt: 1392 z-score: 1574.7 E(): 0%2C 50.1%25 identity in 417 aa overlap%2C and TDCC_ECOLI threonine/serine transporter (443 aa)%2C fasta scores%3B opt: 848 z-score: 961.6 E(): 0%2C 43.8%25 identity in 432 aa overlap. 42.0%25 identity to HP0133%3B~Updated (2006) note: Prosite domains PS50286 AROMATIC_AA_PERM_2%2C Amino acid/polyamine transporter II and PS50285 AMINO_ACID_PERMEASE_2%2C Amino acid/polyamine transporter I were identified within CDS. Further support given to product function. Eleven probable transmembrane helices predicted by TMHMM2.0. Characterised within Escherichia coli with acceptable identity scores. Product function updated. Putative not added to product function. Functional classification - Transport/binding proteins -Amino acids and amines%3B~PMID:8026499%2C PMID:15743941%2C PMID:14688104;gbkey=CDS;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;product=amino acid transporter;protein_id=CAL35722.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1553149	1553202	.	-	.	ID=id-Cj1625c;Note=11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35%2C 39-56%2C 84-106%2C 130-152%2C159-181%2C 201-223%2C 243-265%2C 291-313%2C 334-351%2C 361-383 and 395-412;gbkey=misc_feature;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;part=1/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1553236	1553304	.	-	.	ID=id-Cj1625c;Note=11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35%2C 39-56%2C 84-106%2C 130-152%2C159-181%2C 201-223%2C 243-265%2C 291-313%2C 334-351%2C 361-383 and 395-412;gbkey=misc_feature;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;part=2/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1553332	1553385	.	-	.	ID=id-Cj1625c;Note=11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35%2C 39-56%2C 84-106%2C 130-152%2C159-181%2C 201-223%2C 243-265%2C 291-313%2C 334-351%2C 361-383 and 395-412;gbkey=misc_feature;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;part=3/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1553446	1553514	.	-	.	ID=id-Cj1625c;Note=11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35%2C 39-56%2C 84-106%2C 130-152%2C159-181%2C 201-223%2C 243-265%2C 291-313%2C 334-351%2C 361-383 and 395-412;gbkey=misc_feature;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;part=4/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1553590	1553658	.	-	.	ID=id-Cj1625c;Note=11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35%2C 39-56%2C 84-106%2C 130-152%2C159-181%2C 201-223%2C 243-265%2C 291-313%2C 334-351%2C 361-383 and 395-412;gbkey=misc_feature;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;part=5/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1553716	1553784	.	-	.	ID=id-Cj1625c;Note=11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35%2C 39-56%2C 84-106%2C 130-152%2C159-181%2C 201-223%2C 243-265%2C 291-313%2C 334-351%2C 361-383 and 395-412;gbkey=misc_feature;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;part=6/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1553842	1553910	.	-	.	ID=id-Cj1625c;Note=11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35%2C 39-56%2C 84-106%2C 130-152%2C159-181%2C 201-223%2C 243-265%2C 291-313%2C 334-351%2C 361-383 and 395-412;gbkey=misc_feature;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;part=7/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1553929	1553997	.	-	.	ID=id-Cj1625c;Note=11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35%2C 39-56%2C 84-106%2C 130-152%2C159-181%2C 201-223%2C 243-265%2C 291-313%2C 334-351%2C 361-383 and 395-412;gbkey=misc_feature;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;part=8/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1554067	1554135	.	-	.	ID=id-Cj1625c;Note=11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35%2C 39-56%2C 84-106%2C 130-152%2C159-181%2C 201-223%2C 243-265%2C 291-313%2C 334-351%2C 361-383 and 395-412;gbkey=misc_feature;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;part=9/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1554217	1554270	.	-	.	ID=id-Cj1625c;Note=11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35%2C 39-56%2C 84-106%2C 130-152%2C159-181%2C 201-223%2C 243-265%2C 291-313%2C 334-351%2C 361-383 and 395-412;gbkey=misc_feature;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;part=10/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1554280	1554348	.	-	.	ID=id-Cj1625c;Note=11 probable transmembrane helices predicted for Cj1625c by TMHMM2.0 at aa 13-35%2C 39-56%2C 84-106%2C 130-152%2C159-181%2C 201-223%2C 243-265%2C 291-313%2C 334-351%2C 361-383 and 395-412;gbkey=misc_feature;gene=sdaC;inference=protein motif:TMHMM:2.0;locus_tag=Cj1625c;part=11/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1553608	1553640	.	-	.	ID=id-Cj1625c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=sdaC;inference=protein motif:Prosite:PS00013;locus_tag=Cj1625c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1553716	1553748	.	-	.	ID=id-Cj1625c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=sdaC;inference=protein motif:Prosite:PS00013;locus_tag=Cj1625c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1554644	1555060	.	-	.	ID=gene-Cj1626c;Name=Cj1626c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1626c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1554644	1555060	.	-	0	ID=cds-CAL35723.1;Parent=gene-Cj1626c;Dbxref=EnsemblGenomes-Gn:Cj1626c,EnsemblGenomes-Tr:CAL35723,InterPro:IPR021533,UniProtKB/TrEMBL:Q0P802,NCBI_GP:CAL35723.1;Name=CAL35723.1;Note=Original (2000) note: Cj1626c%2C probable periplasmic protein%2C len: 138 aa%3B no Hp match. Also similar to Cj1004 (38.6%25 identity in 140 aa overlap)%2C and in N-terminus to Cj1722c (53.1%25 identity in 32 aa overlap)%3B~Updated (2006) note: Literature search identified paper giving further clues to product function. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:15554967;gbkey=CDS;locus_tag=Cj1626c;product=putative periplasmic protein;protein_id=CAL35723.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1555124	1555867	.	-	.	ID=gene-Cj1627c;Name=Cj1627c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1627c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1555124	1555867	.	-	0	ID=cds-CAL35724.1;Parent=gene-Cj1627c;Dbxref=EnsemblGenomes-Gn:Cj1627c,EnsemblGenomes-Tr:CAL35724,InterPro:IPR025357,UniProtKB/TrEMBL:Q0P801,NCBI_GP:CAL35724.1;Name=CAL35724.1;Note=Original (2000) note: Cj1627c%2C unknown%2C len: 247 aa%3B no Hp match%3B~Updated (2006) note: Similar to hypothetical proteins from other bacteria. Functional classification -Unknown;gbkey=CDS;locus_tag=Cj1627c;product=hypothetical protein Cj1627c;protein_id=CAL35724.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1556025	1556450	.	+	.	ID=gene-Cj1628;Name=exbB2;gbkey=Gene;gene=exbB2;gene_biotype=protein_coding;locus_tag=Cj1628
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1556025	1556450	.	+	0	ID=cds-CAL35725.1;Parent=gene-Cj1628;Dbxref=EnsemblGenomes-Gn:Cj1628,EnsemblGenomes-Tr:CAL35725,GOA:Q0P800,InterPro:IPR002898,InterPro:IPR014172,UniProtKB/TrEMBL:Q0P800,NCBI_GP:CAL35725.1;Name=CAL35725.1;Note=Original (2000) note: Cj1628%2C exbB2%2C probable exbB/tolQ family transport protein%2C len: 141 aa%3B similar to many e.g. EXBB_HAEDU biopolymer transport EXBB protein (150 aa)%2C fasta scores%3B opt: 426 z-score: 531.7 E(): 2.7e-22%2C 51.2%25 identity in 129 aa overlap. 54.4%25 identity to HP1339. Also similar to Cj0179 exbB (31.3%25 identity in 150 aa overlap)%2C and Cj0109 exbB2 (44.4%25 identity in 81 aa overlap)%3B~Updated (2006) note: Pfam domain PF01618 MotA/TolQ/ExbB proton channel family identified within CDS. Further support given to product function. Three probable transmembrane helices predicted by TMHMM2.0. No specific characterisation has been carried out yet%2C so putative kept within product function. Functional classification - Transport/binding proteins - Other%3B~PMID:9781885;gbkey=CDS;gene=exbB2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1628;product=putative exbB/tolQ family transport protein;protein_id=CAL35725.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1556034	1556444	.	+	.	ID=id-Cj1628;Note=HMMPfam hit to PF01618%2C MotA/TolQ/ExbB proton channel family%2C score 9.2e-42;gbkey=misc_feature;gene=exbB2;inference=protein motif:Pfam:PF01618;locus_tag=Cj1628
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1556052	1556108	.	+	.	ID=id-Cj1628-2;Note=3 probable transmembrane helices predicted for Cj1628 by TMHMM2.0 at aa 10-28%2C 61-83 and 103-125;gbkey=misc_feature;gene=exbB2;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1628;part=1/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1556205	1556273	.	+	.	ID=id-Cj1628-2;Note=3 probable transmembrane helices predicted for Cj1628 by TMHMM2.0 at aa 10-28%2C 61-83 and 103-125;gbkey=misc_feature;gene=exbB2;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1628;part=2/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1556331	1556399	.	+	.	ID=id-Cj1628-2;Note=3 probable transmembrane helices predicted for Cj1628 by TMHMM2.0 at aa 10-28%2C 61-83 and 103-125;gbkey=misc_feature;gene=exbB2;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1628;part=3/3;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1556443	1556832	.	+	.	ID=gene-Cj1629;Name=exbD2;gbkey=Gene;gene=exbD2;gene_biotype=protein_coding;locus_tag=Cj1629
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1556443	1556832	.	+	0	ID=cds-CAL35726.1;Parent=gene-Cj1629;Dbxref=EnsemblGenomes-Gn:Cj1629,EnsemblGenomes-Tr:CAL35726,GOA:Q0P7Z9,InterPro:IPR003400,InterPro:IPR014171,UniProtKB/TrEMBL:Q0P7Z9,NCBI_GP:CAL35726.1;Name=CAL35726.1;Note=Original (2000) note: Cj1629%2C exbD2%2C probable exbD/tolR family transport protein%2C len: 129 aa%3B similar to many e.g. EXBD_HAEDU biopolymer transport EXBD protein (129 aa)%2C fasta scores%3B opt: 337 z-score: 414.6 E(): 9e-16%2C 44.8%25 identity in 125 aa overlap. 49.6%25 identity to HP1340. Also similar to Cj0180 exbD (31.1%25 identity in 122 aa overlap) and Cj0110 exbD2 (26.4%25 identity in 121 aa overlap)%3B~Updated (2006) note: Pfam domain PF02472 Biopolymer transport protein ExbD/TolR identified within CDS. Further support given to product function. One probable transmembrane helices predicted by TMHMM2.0. No specific characterisation with acceptable identity score carried out yet%2C so putative kept within product function. Functional classification - Transport/binding proteins -Other%3B~PMID:9781885;gbkey=CDS;gene=exbD2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1629;product=putative exbD/tolR family transport protein;protein_id=CAL35726.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1556452	1556826	.	+	.	ID=id-Cj1629;Note=HMMPfam hit to PF02472%2C Biopolymer transport protein ExbD/TolR%2C score 6.5e-41;gbkey=misc_feature;gene=exbD2;inference=protein motif:Pfam:PF02472;locus_tag=Cj1629
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1556476	1556544	.	+	.	ID=id-Cj1629-2;Note=1 probable transmembrane helix predicted for Cj1629 by TMHMM2.0 at aa 12-34;gbkey=misc_feature;gene=exbD2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1629
gi|15791399|ref|NC_002163.1|	EMBL	gene	1556829	1557512	.	+	.	ID=gene-Cj1630;Name=tonB2;gbkey=Gene;gene=tonB2;gene_biotype=protein_coding;locus_tag=Cj1630
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1556829	1557512	.	+	0	ID=cds-CAL35727.1;Parent=gene-Cj1630;Dbxref=EnsemblGenomes-Gn:Cj1630,EnsemblGenomes-Tr:CAL35727,GOA:Q0P7Z8,InterPro:IPR003538,InterPro:IPR006260,UniProtKB/TrEMBL:Q0P7Z8,NCBI_GP:CAL35727.1;Name=CAL35727.1;Note=Original (2000) note: Cj1630%2C tonB2%2C probable tonB transport protein%2C len: 227 aa%3B similar to many e.g. TONB_CAMCO TONB protein (232 aa)%2C fasta scores%3B opt: 412 z-score: 428.1 E(): 1.6e-16%2C 41.9%25 identity in 236 aa overlap. 25.9%25 identity to HP0582. Also similar to Cj0753c tonB (41.7%25 identity in 230 aa overlap)%3B~Updated (2006) note: Pfam domain PF03544 Gram-negative bacterial tonB protein identified within CDS. Further support given to product function. Also%2C one probable transmembrane helix predicted by TMHMM2.0. Some characterisation work carried out within Campylobacter coli with acceptable identity score. Characterisation work also carried out within Vibrio cholerae%2C however%2C identity score was unnacceptable. Putative kept within product function. Functional classification - Transport/binding proteins - Other%3B~PMID:9190817%2C PMID:10689178%2C PMID:15557661;gbkey=CDS;gene=tonB2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1630;product=putative TonB transport protein;protein_id=CAL35727.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1556862	1556915	.	+	.	ID=id-Cj1630;Note=1 probable transmembrane helix predicted for Cj1630 by TMHMM2.0 at aa 12-29;gbkey=misc_feature;gene=tonB2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1630
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1557270	1557374	.	+	.	ID=id-Cj1630-2;Note=HMMPfam hit to PF03544%2C Gram-negative bacterial tonB protein%2C score 3e-13;gbkey=misc_feature;gene=tonB2;inference=protein motif:Pfam:PF03544;locus_tag=Cj1630
gi|15791399|ref|NC_002163.1|	EMBL	gene	1557525	1558394	.	-	.	ID=gene-Cj1631c;Name=Cj1631c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1631c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1557525	1558394	.	-	0	ID=cds-CAL35728.1;Parent=gene-Cj1631c;Dbxref=EnsemblGenomes-Gn:Cj1631c,EnsemblGenomes-Tr:CAL35728,UniProtKB/TrEMBL:Q0P7Z7,NCBI_GP:CAL35728.1;Name=CAL35728.1;Note=Original (2000) note: Cj1631c%2C unknown%2C len: 289 aa%3B no Hp match. Contains PS00018 EF-hand calcium-binding domain. Functional classification - Unknown;gbkey=CDS;inference=protein motif:Prosite:PS00018;locus_tag=Cj1631c;product=conserved hypothetical protein Cj1631c;protein_id=CAL35728.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1557864	1557902	.	-	.	ID=id-Cj1631c;Note=PS00018 EF-hand calcium-binding domain;gbkey=misc_feature;inference=protein motif:Prosite:PS00018;locus_tag=Cj1631c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1558398	1558559	.	-	.	ID=gene-Cj1632c;Name=Cj1632c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1632c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1558398	1558559	.	-	0	ID=cds-CAL35729.1;Parent=gene-Cj1632c;Dbxref=EnsemblGenomes-Gn:Cj1632c,EnsemblGenomes-Tr:CAL35729,UniProtKB/TrEMBL:Q0P7Z6,NCBI_GP:CAL35729.1;Name=CAL35729.1;Note=Original (2000) note: Cj1632c%2C possible periplasmic protein%2C len: 53 aa%3B no Hp match. Contains possible N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1632c;product=putative periplasmic protein;protein_id=CAL35729.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1558654	1559637	.	+	.	ID=gene-Cj1633;Name=Cj1633;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1633
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1558654	1559637	.	+	0	ID=cds-CAL35730.1;Parent=gene-Cj1633;Dbxref=EnsemblGenomes-Gn:Cj1633,EnsemblGenomes-Tr:CAL35730,GOA:Q0P7Z5,InterPro:IPR004506,InterPro:IPR014729,InterPro:IPR020536,UniProtKB/TrEMBL:Q0P7Z5,NCBI_GP:CAL35730.1;Name=CAL35730.1;Note=Original (2000) note: Cj1633%2C unknown%2C len: 327 aa%3B similar to hypothetical proteins e.g. TR:O67046 (EMBL:AE000713) Aquifex aeolicus AQ_898 (251 aa)%2C fasta scores%3B opt: 544 z-score: 648.2 E(): 8.8e-29%2C 50.2%25 identity in 221 aa overlap. 44.7%25 identity to HP0013. Contains HP0013%3B~Updated (2006) note: Pfam domain PF01902 ATP-binding region identified within CDS. Product function modified to more specific family member based on motif match. Putative kept within product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01902;locus_tag=Cj1633;product=putative ATP-binding protein;protein_id=CAL35730.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1558906	1558923	.	+	.	ID=id-Cj1633;Note=PS00190 Cytochrome c family heme-binding site signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00190;locus_tag=Cj1633
gi|15791399|ref|NC_002163.1|	EMBL	gene	1559723	1560811	.	-	.	ID=gene-Cj1634c;Name=aroC;gbkey=Gene;gene=aroC;gene_biotype=protein_coding;locus_tag=Cj1634c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1559723	1560811	.	-	0	ID=cds-CAL35731.1;Parent=gene-Cj1634c;Dbxref=EnsemblGenomes-Gn:Cj1634c,EnsemblGenomes-Tr:CAL35731,GOA:Q9PM41,InterPro:IPR000453,InterPro:IPR020541,PDB:1SQ1,NCBI_GP:CAL35731.1;Name=CAL35731.1;Note=Original (2000) note: Cj1634c%2C aroC%2C probable chorismate synthase%2C len: 362 aa%3B similar to many e.g. AROC_ECOLI chorismate synthase (EC 4.6.1.4) (360 aa)%2Cfasta scores%3B opt: 1070 z-score: 1249.8 E(): 0%2C 47.5%25 identity in 354 aa overlap. 52.7%25 identity to HP0663. Contains PS00787 and PS00788 Chorismate synthase signatures 1 and 2%2C and Pfam match to entry PF01264 Chorismate_synth%2C Chorismate synthase%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Appropriate motifs present. Putative not added to product function. Functional classification - Amino acid biosynthesis - Aromatic amino acid family%3B~PMID:2182772;gbkey=CDS;gene=aroC;inference=protein motif:Prosite:PS00788;locus_tag=Cj1634c;product=chorismate synthase;protein_id=CAL35731.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1559768	1560790	.	-	.	ID=id-Cj1634c;Note=HMMPfam hit to PF01264%2C Chorismate synthase%2C score 6.3e-158;gbkey=misc_feature;gene=aroC;inference=protein motif:Pfam:PF01264;locus_tag=Cj1634c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1560407	1560451	.	-	.	ID=id-Cj1634c-2;Note=PS00788 Chorismate synthase signature 2;gbkey=misc_feature;gene=aroC;inference=protein motif:Prosite:PS00788;locus_tag=Cj1634c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1560725	1560772	.	-	.	ID=id-Cj1634c-3;Note=PS00787 Chorismate synthase signature 1;gbkey=misc_feature;gene=aroC;inference=protein motif:Prosite:PS00787;locus_tag=Cj1634c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1560811	1561485	.	-	.	ID=gene-Cj1635c;Name=rnc;gbkey=Gene;gene=rnc;gene_biotype=protein_coding;locus_tag=Cj1635c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1560811	1561485	.	-	0	ID=cds-CAL35732.1;Parent=gene-Cj1635c;Dbxref=EnsemblGenomes-Gn:Cj1635c,EnsemblGenomes-Tr:CAL35732,GOA:Q9PM40,InterPro:IPR000999,InterPro:IPR011907,InterPro:IPR014720,PDB:3O2R,NCBI_GP:CAL35732.1;Name=CAL35732.1;Note=Original (2000) note: Cj1635c%2C rnc%2C probable ribonuclease III%2C len: 224 aa%3B similar to many e.g. RNC_BACSU ribonuclease III (EC 3.1.26.3) (266 aa)%2C fasta scores%3B opt: 520 z-score: 605.8 E(): 2e-26%2C 38.9%25 identity in 229 aa overlap. 50.2%25 identity to HP0662. Contains PS00517 Ribonuclease III family signature%2C Pfam match to entry PF00636 Ribonuclease_3%2C RNase3 domain%2C and Pfam match to entry PF00035 dsrm%2C Double-stranded RNA binding motif%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -RNA synthesis%2C RNA modification and DNA transcription%3B~PMID:1100606%2C PMID:3903434%2C PMID:8971718;gbkey=CDS;gene=rnc;inference=protein motif:Prosite:PS00517;locus_tag=Cj1635c;product=ribonuclease III;protein_id=CAL35732.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1560823	1561023	.	-	.	ID=id-Cj1635c;Note=HMMPfam hit to PF00035%2C Double-stranded RNA binding motif%2C score 2.1e-19;gbkey=misc_feature;gene=rnc;inference=protein motif:Pfam:PF00035;locus_tag=Cj1635c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1561105	1561377	.	-	.	ID=id-Cj1635c-2;Note=HMMPfam hit to PF00636%2C RNase3 domain%2C score 1.2e-41;gbkey=misc_feature;gene=rnc;inference=protein motif:Pfam:PF00636;locus_tag=Cj1635c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1561351	1561377	.	-	.	ID=id-Cj1635c-3;Note=PS00517 Ribonuclease III family signature;gbkey=misc_feature;gene=rnc;inference=protein motif:Prosite:PS00517;locus_tag=Cj1635c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1561472	1561912	.	-	.	ID=gene-Cj1636c;Name=rnhA;gbkey=Gene;gene=rnhA;gene_biotype=protein_coding;locus_tag=Cj1636c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1561472	1561912	.	-	0	ID=cds-CAL35733.1;Parent=gene-Cj1636c;Dbxref=EnsemblGenomes-Gn:Cj1636c,EnsemblGenomes-Tr:CAL35733,GOA:Q9PM39,InterPro:IPR002156,InterPro:IPR012337,InterPro:IPR022892,NCBI_GP:CAL35733.1;Name=CAL35733.1;Note=Original (2000) note: Cj1636c%2C rnhA%2C probable ribonuclease HI%2C len: 146 aa%3B similar to many e.g. RNH_ECOLI ribonuclease HI (EC 3.1.26.4) (155 aa)%2C fasta scores%3B opt: 474 z-score: 610.5 E(): 1.1e-26%2C 50.3%25 identity in 147 aa overlap. 57.7%25 identity to HP0661%3B~Updated (2006) note: Pfam domain PF00075 RNase H was identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - DNA replication%2C restriction/modification%2C recombination and repair%3B~PMID:1689729;gbkey=CDS;gene=rnhA;inference=protein motif:Pfam:PF00075;locus_tag=Cj1636c;product=ribonuclease HI;protein_id=CAL35733.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1561505	1561912	.	-	.	ID=id-Cj1636c;Note=HMMPfam hit to PF00075%2C RNase H%2C score 3.7e-46;gbkey=misc_feature;gene=rnhA;inference=protein motif:Pfam:PF00075;locus_tag=Cj1636c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1561899	1562885	.	-	.	ID=gene-Cj1637c;Name=Cj1637c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1637c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1561899	1562885	.	-	0	ID=cds-CAL35734.1;Parent=gene-Cj1637c;Dbxref=EnsemblGenomes-Gn:Cj1637c,EnsemblGenomes-Tr:CAL35734,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR019734,UniProtKB/TrEMBL:Q0P7Z1,NCBI_GP:CAL35734.1;Name=CAL35734.1;Note=Original (2000) note: Cj1637c%2C probable periplasmic protein%2C len: 328 aa%3B 26.1%25 identity to HP0660. Contains possible N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF07719 Tetratricopeptide repeat identified within CDS. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Pfam:PF07719;locus_tag=Cj1637c;product=putative periplasmic protein;protein_id=CAL35734.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1562472	1562573	.	-	.	ID=id-Cj1637c;Note=HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 0.0026;gbkey=misc_feature;inference=protein motif:Pfam:PF07719;locus_tag=Cj1637c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1562784	1562852	.	-	.	ID=id-Cj1637c-2;Note=1 probable transmembrane helix predicted for Cj1637c by TMHMM2.0 at aa 12-34;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1637c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1562955	1564772	.	+	.	ID=gene-Cj1638;Name=dnaG;gbkey=Gene;gene=dnaG;gene_biotype=protein_coding;locus_tag=Cj1638
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1562955	1564772	.	+	0	ID=cds-CAL35735.1;Parent=gene-Cj1638;Dbxref=EnsemblGenomes-Gn:Cj1638,EnsemblGenomes-Tr:CAL35735,GOA:Q9PM37,InterPro:IPR002694,InterPro:IPR006171,InterPro:IPR006295,InterPro:IPR013264,NCBI_GP:CAL35735.1;Name=CAL35735.1;Note=Original (2000) note: Cj1638%2C dnaG%2C probable DNA primase%2C len: 605 aa%3B similar to many e.g. PRIM_ECOLI DNA primase (EC 2.7.7.-) (581 aa)%2C fasta scores%3B opt: 574 z-score: 622.2 E(): 2.5e-27%2C 30.2%25 identity in 470 aa overlap. 37.8%25 identity to HP0012%3B~Updated (2006) note: Pfam domains PF01807 CHC2 zinc finger and PF01751 Toprim domain were both identified within CDS. Further support given to product function. Characterised within Escherichia coli%2C however%2C identity score was marginal. Putative was not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:392509%2C PMID:9226268;gbkey=CDS;gene=dnaG;inference=protein motif:Pfam:PF01807;locus_tag=Cj1638;product=DNA primase;protein_id=CAL35735.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1562958	1563251	.	+	.	ID=id-Cj1638;Note=HMMPfam hit to PF01807%2C CHC2 zinc finger%2C score 4.2e-50;gbkey=misc_feature;gene=dnaG;inference=protein motif:Pfam:PF01807;locus_tag=Cj1638
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1563696	1563935	.	+	.	ID=id-Cj1638-2;Note=HMMPfam hit to PF01751%2C Toprim domain%2C score 3.7e-18;gbkey=misc_feature;gene=dnaG;inference=protein motif:Pfam:PF01751;locus_tag=Cj1638
gi|15791399|ref|NC_002163.1|	EMBL	gene	1564854	1565126	.	+	.	ID=gene-Cj1639;Name=Cj1639;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1639
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1564854	1565126	.	+	0	ID=cds-CAL35736.1;Parent=gene-Cj1639;Dbxref=EnsemblGenomes-Gn:Cj1639,EnsemblGenomes-Tr:CAL35736,GOA:Q0P7Y9,InterPro:IPR001075,UniProtKB/TrEMBL:Q0P7Y9,NCBI_GP:CAL35736.1;Name=CAL35736.1;Note=Original (2000) note: Cj1639%2C unknown%2C len: 90 aa%3B similar to members of the NIFU family of hypothetical poteins e.g. NIU1_RHOCA NIFU protein 1 (135 aa)%2C fasta scores%3B opt: 158 z-score: 219.3 E(): 6.8e-05 36.5%25 identity in 63 aa overlap. Identical to TR:O69292 (EMBL:Y16882) C. jejuni NIFU-like protein. 52.2%25 identity to HP1492. Contains Pfam match to entry PF01106 NifU-like%2CNifU-like domain. Also similar to N-terminus of Cj0239c (38.2%25 identity in 76 aa overlap). Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF01106;locus_tag=Cj1639;product=NifU protein homolog;protein_id=CAL35736.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1564890	1565093	.	+	.	ID=id-Cj1639;Note=HMMPfam hit to PF01106%2C NifU-like domain%2C score 2.7e-20;gbkey=misc_feature;inference=protein motif:Pfam:PF01106;locus_tag=Cj1639
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1564968	1565000	.	+	.	ID=id-Cj1639-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1639
gi|15791399|ref|NC_002163.1|	EMBL	gene	1565113	1565664	.	+	.	ID=gene-Cj1640;Name=Cj1640;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1640
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1565113	1565664	.	+	0	ID=cds-CAL35737.1;Parent=gene-Cj1640;Dbxref=EnsemblGenomes-Gn:Cj1640,EnsemblGenomes-Tr:CAL35737,UniProtKB/TrEMBL:Q0P7Y8,NCBI_GP:CAL35737.1;Name=CAL35737.1;Note=Original (2000) note: Cj1640%2C unknown%2C len: 183 aa%3B 27.7%25 identity to HP1493. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1640;product=hypothetical protein Cj1640;protein_id=CAL35737.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1565648	1566931	.	+	.	ID=gene-Cj1641;Name=murE;gbkey=Gene;gene=murE;gene_biotype=protein_coding;locus_tag=Cj1641
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1565648	1566931	.	+	0	ID=cds-CAL35738.1;Parent=gene-Cj1641;Dbxref=EnsemblGenomes-Gn:Cj1641,EnsemblGenomes-Tr:CAL35738,GOA:O69290,InterPro:IPR004101,InterPro:IPR005761,InterPro:IPR013221,InterPro:IPR018109,NCBI_GP:CAL35738.1;Name=CAL35738.1;Note=Original (2000) note: Cj1641%2C murE%2CUDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimela te ligase%2C len: 427 aa%3B almost identical to MURE_CAMJE UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimela te ligase (EC 6.3.2.13) (350 aa) 97.2%25 identity in 323 aa overlap%2C and similar to many e.g. MURE_ECOLI UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimela te ligase (494 aa)%2C fasta scores%3B opt: 499 z-score: 569.1 E(): 2.2e-24%2C 37.5%25 identity in 387 aa overlap. 48.0%25 identity to HP1494%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Also direct submission from Campylobacter jejuni with identical function. Putative not added to product function. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:2269304;gbkey=CDS;gene=murE;locus_tag=Cj1641;product=UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase;protein_id=CAL35738.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1565648	1566454	.	+	.	ID=id-Cj1641;Note=HMMPfam hit to PF01225%2C Mur ligase family%2Ccatalytic domain%2C score 6.2e-36;gbkey=misc_feature;gene=murE;inference=protein motif:Pfam:PF01225;locus_tag=Cj1641
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1565831	1565902	.	+	.	ID=id-Cj1641-2;Note=PS01011 Folylpolyglutamate synthase signature 1;gbkey=misc_feature;gene=murE;inference=protein motif:Prosite:PS01011;locus_tag=Cj1641
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1566383	1566415	.	+	.	ID=id-Cj1641-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=murE;inference=protein motif:Prosite:PS00013;locus_tag=Cj1641
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1566479	1566724	.	+	.	ID=id-Cj1641-4;Note=HMMPfam hit to PF02875%2C Mur ligase family%2Cglutamate ligase doma%2C score 9.8e-27;gbkey=misc_feature;gene=murE;inference=protein motif:Pfam:PF02875;locus_tag=Cj1641
gi|15791399|ref|NC_002163.1|	EMBL	gene	1566935	1567246	.	+	.	ID=gene-Cj1642;Name=Cj1642;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1642
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1566935	1567246	.	+	0	ID=cds-CAL35739.1;Parent=gene-Cj1642;Dbxref=EnsemblGenomes-Gn:Cj1642,EnsemblGenomes-Tr:CAL35739,GOA:Q9PM34,InterPro:IPR004401,NCBI_GP:CAL35739.1;Name=CAL35739.1;Note=Original (2000) note: Cj1642%2C unknown%2C len: 309 aa%3B similar to hypothetical proteins e.g. TR:O34247 (EMBL:AJ003049) Wolinella succinogenes ORF102 (102 aa)%2Cfasta scores%3B opt: 351 z-score: 446.1 E(): 1.6e-17%2C 62.5%25 identity in 96 aa overlap%2C and YBAB_ECOLI (109 aa)%2C fast scores%3B opt: 182 z-score: 240.6 E(): 4.4e-06%2C 36.7%25 identity in 98 aa overlap. 45.4%25 identity to HP0035%3B~Updated (2006) note: Pfam domain PF02575 Uncharacterised BCR%2C YbaB family COG0718 identified within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02575;locus_tag=Cj1642;product=conserved hypothetical protein Cj1642;protein_id=CAL35739.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1566965	1567237	.	+	.	ID=id-Cj1642;Note=HMMPfam hit to PF02575%2C Uncharacterised BCR%2C YbaB family COG0718%2C score 9.9e-35;gbkey=misc_feature;inference=protein motif:Pfam:PF02575;locus_tag=Cj1642
gi|15791399|ref|NC_002163.1|	EMBL	gene	1567243	1568337	.	+	.	ID=gene-Cj1643;Name=Cj1643;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1643
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1567243	1568337	.	+	0	ID=cds-CAL35740.1;Parent=gene-Cj1643;Dbxref=EnsemblGenomes-Gn:Cj1643,EnsemblGenomes-Tr:CAL35740,InterPro:IPR001478,UniProtKB/TrEMBL:Q0P7Y5,NCBI_GP:CAL35740.1;Name=CAL35740.1;Note=Original (2000) note: Cj1643%2C probable periplasmic protein%2C len: 364 aa%3B similar to hypothetical proteins e.g. TR:O34248 (EMBL:AJ003049) Wolinella succinogenes ORF341 protein (341 aa)%2C fasta scores%3B opt: 238 z-score: 283.8 E(): 1.7e-08%2C 23.6%25 identity in 314 aa overlap. 25.5%25 identity to HP0036. Contains probable N-terminal signal sequence%2C and Pfam match to entry PF00595 PDZ%2C PDZ domain (Also known as DHR or GLGF)%3B~Updated (2006) note: Paper identified linking protein to glycoprotein. Functional classification -Miscellaneous periplasmic proteins%3B~PMID:12186869;gbkey=CDS;inference=protein motif:Pfam:PF00595;locus_tag=Cj1643;product=putative periplasmic protein;protein_id=CAL35740.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1568334	1569179	.	+	.	ID=gene-Cj1644;Name=ispA;gbkey=Gene;gene=ispA;gene_biotype=protein_coding;locus_tag=Cj1644
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1568334	1569179	.	+	0	ID=cds-CAL35741.1;Parent=gene-Cj1644;Dbxref=EnsemblGenomes-Gn:Cj1644,EnsemblGenomes-Tr:CAL35741,GOA:Q0P7Y4,InterPro:IPR000092,InterPro:IPR008949,InterPro:IPR017446,UniProtKB/TrEMBL:Q0P7Y4,NCBI_GP:CAL35741.1;Name=CAL35741.1;Note=Original (2000) note: Cj1644%2C ispA%2C probable geranyltranstransferase%2C len: 281 aa%3B similar to many e.g. ISPA_ECOLI geranyltranstransferase (EC 2.5.1.10) (FARN (299 aa)%2C fast scores%3B opt: 520 z-score: 633.4 E(): 5.8e-28%2C 37.5%25 identity in 275 aa overlap. 48.0%25 identity to HP0929. Alos similar to Cj0541 (27.6%25 identity in 268 aa overlap). Contains PS00723 and PS00444 Polyprenyl synthetases signatures 1 and 2%2C and Pfam match to entry PF00348 polyprenyl_synt%2C Polyprenyl synthetases%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Biosynthesis of cofactors%2C prosthetic groups and carriers - Menaquinone and ubiquinine%3B~PMID:2089044;gbkey=CDS;gene=ispA;inference=protein motif:Prosite:PS00723;locus_tag=Cj1644;product=geranyltranstransferase;protein_id=CAL35741.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1568403	1569167	.	+	.	ID=id-Cj1644;Note=HMMPfam hit to PF00348%2C Polyprenyl synthetase%2Cscore 8.6e-63;gbkey=misc_feature;gene=ispA;inference=protein motif:Pfam:PF00348;locus_tag=Cj1644
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1568556	1568606	.	+	.	ID=id-Cj1644-2;Note=PS00723 Polyprenyl synthetases signature 1;gbkey=misc_feature;gene=ispA;inference=protein motif:Prosite:PS00723;locus_tag=Cj1644
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1568946	1568984	.	+	.	ID=id-Cj1644-3;Note=PS00444 Polyprenyl synthetases signature 2;gbkey=misc_feature;gene=ispA;inference=protein motif:Prosite:PS00444;locus_tag=Cj1644
gi|15791399|ref|NC_002163.1|	EMBL	gene	1569190	1571088	.	+	.	ID=gene-Cj1645;Name=tkt;gbkey=Gene;gene=tkt;gene_biotype=protein_coding;locus_tag=Cj1645
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1569190	1571088	.	+	0	ID=cds-CAL35742.1;Parent=gene-Cj1645;Dbxref=EnsemblGenomes-Gn:Cj1645,EnsemblGenomes-Tr:CAL35742,GOA:Q0P7Y3,InterPro:IPR005474,InterPro:IPR005475,InterPro:IPR005476,InterPro:IPR005478,InterPro:IPR009014,InterPro:IPR020826,InterPro:IPR029061,PDB:3L84,PDB:3M34,PDB:3M6L,PDB:3M7I,UniProtKB/TrEMBL:Q0P7Y3,NCBI_GP:CAL35742.1;Name=CAL35742.1;Note=Original (2000) note: Cj1645%2C tkt%2C transketolase%2Clen: 632 aa%3B similar to many e.g. TKT_BACSU transketolase (EC 2.2.1.1) (667 aa)%2C fasta scores%3B opt: 783 z-score: 893.8 E(): 0%2C fasta scores%3B 45.7%25 identity in 659 aa overlap%2C TKT1_YEAST transketolase 1 (EC 2.2.1.1) (679 aa)%2Cfasta scores%3B opt: 956 z-score: 1091.4 E(): 0%2C 44.9%25 identity in 642 aa overlap. 59.9%25 identity to HP1088. Also similar to Cj0321 dxs (26.2%25 identity in 653 aa overlap). Contains PS00801 and PS00802 Transketolase signatures 1 and 2%2C and Pfam match to entry PF00456 transketolase%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Energy metabolism - Pentose phosphate pathway -Non-oxidative branch%3B~PMID:8635754;gbkey=CDS;gene=tkt;inference=protein motif:Prosite:PS00802;locus_tag=Cj1645;product=transketolase;protein_id=CAL35742.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1569202	1570182	.	+	.	ID=id-Cj1645;Note=HMMPfam hit to PF00456%2C Transketolase%2C thiamine diphosphate b%2C score 1.1e-148;gbkey=misc_feature;gene=tkt;inference=protein motif:Pfam:PF00456;locus_tag=Cj1645
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1569229	1569291	.	+	.	ID=id-Cj1645-2;Note=PS00801 Transketolase signature 1;gbkey=misc_feature;gene=tkt;inference=protein motif:Prosite:PS00801;locus_tag=Cj1645
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1570201	1570704	.	+	.	ID=id-Cj1645-3;Note=HMMPfam hit to PF02779%2C Transketolase%2C pyridine binding domai%2C score 3.3e-50;gbkey=misc_feature;gene=tkt;inference=protein motif:Pfam:PF02779;locus_tag=Cj1645
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1570528	1570578	.	+	.	ID=id-Cj1645-4;Note=PS00802 Transketolase signature 2;gbkey=misc_feature;gene=tkt;inference=protein motif:Prosite:PS00802;locus_tag=Cj1645
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1570738	1571064	.	+	.	ID=id-Cj1645-5;Note=HMMPfam hit to PF02780%2C Transketolase%2C C-terminal domain%2C score 0.00035;gbkey=misc_feature;gene=tkt;inference=protein motif:Pfam:PF02780;locus_tag=Cj1645
gi|15791399|ref|NC_002163.1|	EMBL	gene	1571090	1572199	.	+	.	ID=gene-Cj1646;Name=iamB;gbkey=Gene;gene=iamB;gene_biotype=protein_coding;locus_tag=Cj1646
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1571090	1572199	.	+	0	ID=cds-CAL35743.1;Parent=gene-Cj1646;Dbxref=EnsemblGenomes-Gn:Cj1646,EnsemblGenomes-Tr:CAL35743,InterPro:IPR002645,InterPro:IPR003453,UniProtKB/TrEMBL:Q0P7Y2,NCBI_GP:CAL35743.1;Name=CAL35743.1;Note=Original (2000) note: Cj1646%2C iamB%2C possible ABC transport system permease protein%2C len: 369 aa%3B 91.6%25 identity to TR:O68254 (EMBL:AF023133) C. jejuni iamB gene fragment (133 aa). Similar to hypothetical proteins e.g. YRBE_ECOLI (260 aa)%2C fast scores%3B opt: 363 z-score: 423.9 E(): 2.7e-16%2C 28.1%25 identity in 256 aa overlap%2C and to TR:AAD17958 (EMBL:AF106002) Pseudomonas putida toluene tolerance protein TTG2B (265 aa)%2C fast scores%3B opt: 381 z-score: 444.3 E(): 2e-17%2C 30.0%25 identity in 203 aa overlap. 41.1%25 identity to HP1466%3B~Updated (2006) note: Pfam domain PF02405 Domain of unknown function DUF140 identified within CDS. Six probable transmembrane helices predicted by TMHMM2.0. Specific characterisation with acceptable identity score has not been carried out yet. Putative kept within product function. Some work carried out within Campylobacter spp. Functional classification - Transport/binding proteins -Other%3B~PMID:11283056%2C PMID:12694614;gbkey=CDS;gene=iamB;inference=protein motif:TMHMM:2.0;locus_tag=Cj1646;product=putative ABC transport system permease;protein_id=CAL35743.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1571453	1571512	.	+	.	ID=id-Cj1646;Note=6 probable transmembrane helices predicted for Cj1646 by TMHMM2.0 at aa 122-141%2C 161-183%2C 193-215%2C259-281%2C 306-325 and 346-368;gbkey=misc_feature;gene=iamB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1646;part=1/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1571570	1571638	.	+	.	ID=id-Cj1646;Note=6 probable transmembrane helices predicted for Cj1646 by TMHMM2.0 at aa 122-141%2C 161-183%2C 193-215%2C259-281%2C 306-325 and 346-368;gbkey=misc_feature;gene=iamB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1646;part=2/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1571666	1571734	.	+	.	ID=id-Cj1646;Note=6 probable transmembrane helices predicted for Cj1646 by TMHMM2.0 at aa 122-141%2C 161-183%2C 193-215%2C259-281%2C 306-325 and 346-368;gbkey=misc_feature;gene=iamB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1646;part=3/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1571864	1571932	.	+	.	ID=id-Cj1646;Note=6 probable transmembrane helices predicted for Cj1646 by TMHMM2.0 at aa 122-141%2C 161-183%2C 193-215%2C259-281%2C 306-325 and 346-368;gbkey=misc_feature;gene=iamB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1646;part=4/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1572005	1572064	.	+	.	ID=id-Cj1646;Note=6 probable transmembrane helices predicted for Cj1646 by TMHMM2.0 at aa 122-141%2C 161-183%2C 193-215%2C259-281%2C 306-325 and 346-368;gbkey=misc_feature;gene=iamB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1646;part=5/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1572125	1572193	.	+	.	ID=id-Cj1646;Note=6 probable transmembrane helices predicted for Cj1646 by TMHMM2.0 at aa 122-141%2C 161-183%2C 193-215%2C259-281%2C 306-325 and 346-368;gbkey=misc_feature;gene=iamB;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1646;part=6/6;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1571456	1572184	.	+	.	ID=id-Cj1646-2;Note=HMMPfam hit to PF02405%2C Domain of unknown function DUF140%2C score 1.4e-80;gbkey=misc_feature;gene=iamB;inference=protein motif:Pfam:PF02405;locus_tag=Cj1646
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1572032	1572064	.	+	.	ID=id-Cj1646-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=iamB;inference=protein motif:Prosite:PS00013;locus_tag=Cj1646
gi|15791399|ref|NC_002163.1|	EMBL	gene	1572200	1572922	.	+	.	ID=gene-Cj1647;Name=iamA;gbkey=Gene;gene=iamA;gene_biotype=protein_coding;locus_tag=Cj1647
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1572200	1572922	.	+	0	ID=cds-CAL35744.1;Parent=gene-Cj1647;Dbxref=EnsemblGenomes-Gn:Cj1647,EnsemblGenomes-Tr:CAL35744,GOA:Q0P7Y1,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P7Y1,NCBI_GP:CAL35744.1;Name=CAL35744.1;Note=Original (2000) note: Cj1647%2C iamA%2C probable ABC transport system ATP-binding protein%2C len: 240 aa%3B 89.5%25 identity to TR:O68255(EMBL:AF023133) C. jejuni iamA ABC-transporter. Similar to hypothetical proteins e.g. YRBF_ECOLI HYPOTHETICAL ABC transporter ATP-binding protein (269 aa)%2C fasta scores%3B opt: 453 z-score: 533.0 E(): 2.3e-22%2C 31.8%25 identity in 239 aa overlap%2C and to TR:AAD17957 (EMBL:AF106002) Pseudomonas putida toluene tolerance protein TTG2A (269 aa)%2C fasta scores%3B opt: 491 z-score: 576.9 E(): 8.2e-25%2C 34.5%25 identity in 238 aa overlap. 40.5%25 identity to HP1465. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and fam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Specific characterisation with acceptable identity score has not been carried out yet. Thus%2C putative kept within product function. Some work carried out within Campylobacter spp. Functional classification - Transport/binding proteins - Other%3B~PMID:11283056%2C PMID:16300911;gbkey=CDS;gene=iamA;inference=protein motif:Prosite:PS00211;locus_tag=Cj1647;product=putative ABC transport system ATP-binding protein;protein_id=CAL35744.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1572281	1572847	.	+	.	ID=id-Cj1647;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 4e-51;gbkey=misc_feature;gene=iamA;inference=protein motif:Pfam:PF00005;locus_tag=Cj1647
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1572302	1572325	.	+	.	ID=id-Cj1647-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=iamA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1647
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1572617	1572661	.	+	.	ID=id-Cj1647-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;gene=iamA;inference=protein motif:Prosite:PS00211;locus_tag=Cj1647
gi|15791399|ref|NC_002163.1|	EMBL	gene	1572925	1573815	.	+	.	ID=gene-Cj1648;Name=Cj1648;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1648
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1572925	1573815	.	+	0	ID=cds-CAL35745.1;Parent=gene-Cj1648;Dbxref=EnsemblGenomes-Gn:Cj1648,EnsemblGenomes-Tr:CAL35745,InterPro:IPR003399,UniProtKB/TrEMBL:Q0P7Y0,NCBI_GP:CAL35745.1;Name=CAL35745.1;Note=Original (2000) note: Cj1648%2C possible ABC transport system periplasmic substrate-binding protein%2Clen: 296 aa%3B similar to hypothetical proteins e.g. TR:O67491 (EMBL:AE000744) Aquifex aeolicus AQ_1533 (300 aa)%2C fasta scores%3B opt: 362 z-score: 406.8 E(): 2.4e-15%2C29.7%25 identity in 303 aa overlap%2C and%2C weakly%2C to TR:AAD17959 (EMBL:AF106002) Pseudomonas putida toluene tolerance protein TTG2C (161 aa)%2C fasta scores%3B opt: 161 z-score: 190.8 E(): 0.0026%2C 28.7%25 identity in 122 aa overlap. 24.0%25 identity to HP1464. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF02470 mce related protein identified within CDS. Specific characterisation with acceptable identity score has not been carried out yet. Putative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:Pfam:PF02470;locus_tag=Cj1648;product=putative ABC transport system periplasmic substrate-binding protein;protein_id=CAL35745.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1572943	1573011	.	+	.	ID=id-Cj1648;Note=1 probable transmembrane helix predicted for Cj1648 by TMHMM2.0 at aa 7-29;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1648
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1572952	1573362	.	+	.	ID=id-Cj1648-2;Note=HMMPfam hit to PF02470%2C mce related protein%2C score 0.00095;gbkey=misc_feature;inference=protein motif:Pfam:PF02470;locus_tag=Cj1648
gi|15791399|ref|NC_002163.1|	EMBL	gene	1573815	1574414	.	+	.	ID=gene-Cj1649;Name=Cj1649;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1649
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1573815	1574414	.	+	0	ID=cds-CAL35746.1;Parent=gene-Cj1649;Dbxref=EnsemblGenomes-Gn:Cj1649,EnsemblGenomes-Tr:CAL35746,InterPro:IPR005586,UniProtKB/TrEMBL:Q0P7X9,NCBI_GP:CAL35746.1;Name=CAL35746.1;Note=Original (2000) note: Cj1649%2C probable lipoprotein%2Clen: 199 aa%3B some similarity to YFXK_BRAJA hypothetical protein in (fragment) (180 aa)%2C fast scores%3B opt: 184 z-score: 235.4 E(): 8.6e-06%2C 24.5%25 identity in 143 aa overlap. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. No Hp match. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1649;product=putative lipoprotein;protein_id=CAL35746.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1573836	1573868	.	+	.	ID=id-Cj1649;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1649
gi|15791399|ref|NC_002163.1|	EMBL	gene	1574470	1574970	.	+	.	ID=gene-Cj1650;Name=Cj1650;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1650
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1574470	1574970	.	+	0	ID=cds-CAL35747.1;Parent=gene-Cj1650;Dbxref=EnsemblGenomes-Gn:Cj1650,EnsemblGenomes-Tr:CAL35747,UniProtKB/TrEMBL:Q0P7X8,NCBI_GP:CAL35747.1;Name=CAL35747.1;Note=Original (2000) note: Cj1650%2C unknown%2C len: 166 aa%3B 30.7%25 identity to HP1076. Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1650;product=hypothetical protein Cj1650;protein_id=CAL35747.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1575339	1576097	.	-	.	ID=gene-Cj1651c;Name=map;gbkey=Gene;gene=map;gene_biotype=protein_coding;locus_tag=Cj1651c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1575339	1576097	.	-	0	ID=cds-CAL35748.1;Parent=gene-Cj1651c;Dbxref=EnsemblGenomes-Gn:Cj1651c,EnsemblGenomes-Tr:CAL35748,GOA:Q0P7X7,InterPro:IPR000994,InterPro:IPR001714,InterPro:IPR002467,UniProtKB/TrEMBL:Q0P7X7,NCBI_GP:CAL35748.1;Name=CAL35748.1;Note=Original (2000) note: Cj1651c%2C map%2C probable methionine aminopeptidase%2C len: 252 aa%3B similar to many e.g. AMPM_BACSU methionine aminopeptidase (EC 3.4.11.18) (248 aa)%2C fasta scores%3B opt: 631 z-score: 742.0 E(): 0%2C38.1%25 identity in 252 aa overlap. 57.8%25 identity to HP1299. Contains PS00680 Methionine aminopeptidase subfamily 1 signature%2C and Pfam match to entry PF00557 pep_M24%2C metallopeptidase family M24%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Protein translation and modification%3B~PMID:15901689%2C PMID:8635744%2C PMID:16207374;gbkey=CDS;gene=map;inference=protein motif:Prosite:PS00680;locus_tag=Cj1651c;product=methionine aminopeptidase;protein_id=CAL35748.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1575345	1576067	.	-	.	ID=id-Cj1651c;Note=HMMPfam hit to PF00557%2C metallopeptidase family M24%2C score 1.5e-59;gbkey=misc_feature;gene=map;inference=protein motif:Pfam:PF00557;locus_tag=Cj1651c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1575549	1575605	.	-	.	ID=id-Cj1651c-2;Note=PS00680 Methionine aminopeptidase subfamily 1 signature;gbkey=misc_feature;gene=map;inference=protein motif:Prosite:PS00680;locus_tag=Cj1651c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1576099	1576851	.	-	.	ID=gene-Cj1652c;Name=murI;gbkey=Gene;gene=murI;gene_biotype=protein_coding;locus_tag=Cj1652c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1576099	1576851	.	-	0	ID=cds-CAL35749.1;Parent=gene-Cj1652c;Dbxref=EnsemblGenomes-Gn:Cj1652c,EnsemblGenomes-Tr:CAL35749,GOA:Q9PM24,InterPro:IPR001920,InterPro:IPR004391,InterPro:IPR015942,InterPro:IPR018187,PDB:3UHF,PDB:3UHO,PDB:3UHP,NCBI_GP:CAL35749.1;Name=CAL35749.1;Note=Original (2000) note: Cj1652c%2C murI%2C probable glutamate racemase%2C len: 250 aa%3B similar to many e.g. MURI_BACSH glutamate racemase (EC 5.1.1.3) (265 aa)%2C fasta scores%3B opt: 521 z-score: 627.1 E(): 1.3e-27%2C 38.6%25 identity in 251 aa overlap%2C and MURI_ECOLI glutamate racemase (EC 5.1.1.3) (285 aa)%2C fasta scores%3B opt: 341 z-score: 413.1 E(): 1.1e-15%2C 33.5%25 identity in 236 aa overlap. 53.3%25 identity to HP0549. Contains PS00923 and PS00924 Aspartate and glutamate racemases signatures 1 and 2%2C and Pfam match to entry PF01177 Asp_Glu_race%2C Aspartate / glutamate racemase%3B~Updated (2006) note: Characterised within Bacillus sphaericus with acceptable identity score. Putative not added to product function. Functional classification -Murein sacculus and peptidoglycan%3B~PMID:9696787%2C PMID:15502318;gbkey=CDS;gene=murI;inference=protein motif:Prosite:PS00924;locus_tag=Cj1652c;product=glutamate racemase;protein_id=CAL35749.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1576204	1576848	.	-	.	ID=id-Cj1652c;Note=HMMPfam hit to PF01177%2C Asp/Glu/Hydantoin racemase%2Cscore 2e-90;gbkey=misc_feature;gene=murI;inference=protein motif:Pfam:PF01177;locus_tag=Cj1652c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1576294	1576326	.	-	.	ID=id-Cj1652c-2;Note=PS00924 Aspartate and glutamate racemases signature 2;gbkey=misc_feature;gene=murI;inference=protein motif:Prosite:PS00924;locus_tag=Cj1652c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1576627	1576653	.	-	.	ID=id-Cj1652c-3;Note=PS00923 Aspartate and glutamate racemases signature 1;gbkey=misc_feature;gene=murI;inference=protein motif:Prosite:PS00923;locus_tag=Cj1652c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1576741	1576788	.	-	.	ID=id-Cj1652c-4;Note=PS00225 Crystallins beta and gamma 'Greek key' motif signature;gbkey=misc_feature;gene=murI;inference=protein motif:Prosite:PS00225;locus_tag=Cj1652c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1576853	1577311	.	-	.	ID=gene-Cj1653c;Name=Cj1653c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1653c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1576853	1577311	.	-	0	ID=cds-CAL35750.1;Parent=gene-Cj1653c;Dbxref=EnsemblGenomes-Gn:Cj1653c,EnsemblGenomes-Tr:CAL35750,InterPro:IPR000064,UniProtKB/TrEMBL:Q0P7X5,NCBI_GP:CAL35750.1;Name=CAL35750.1;Note=Original (2000) note: Cj1653c%2C probable lipoprotein%2C len: 152 aa%3B similar to hypothetical proteins e.g. NLPC_ECOLI probable lipoprotein NLPC precursor (154 aa)%2C fasta scores%3B opt: 381 z-score: 485.2 E(): 1e-19%2C40.3%25 identity in 154 aa overlap%2C and SPR_ECOLI lipoprotein SPR precursor (188 aa)%2C fasta scores%3B opt: 355 z-score: 451.8 E(): 7.6e-18%2C 44.7%25 identity in 123 aa overlap. No Hp match. Contains probable N-terminal signal sequence with appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site%2C and Pfam match to entry PF00877 NLPC_P60%2C NLP/P60 family. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1653c;product=putative lipoprotein;protein_id=CAL35750.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1576859	1577176	.	-	.	ID=id-Cj1653c;Note=HMMPfam hit to PF00877%2C NlpC/P60 family%2C score 7.8e-40;gbkey=misc_feature;inference=protein motif:Pfam:PF00877;locus_tag=Cj1653c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1577243	1577302	.	-	.	ID=id-Cj1653c-2;Note=1 probable transmembrane helix predicted for Cj1653c by TMHMM2.0 at aa 4-23;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1653c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1577261	1577293	.	-	.	ID=id-Cj1653c-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1653c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1577320	1578489	.	-	.	ID=gene-Cj1654c;Name=nhaA2;gbkey=Gene;gene=nhaA2;gene_biotype=protein_coding;locus_tag=Cj1654c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1577320	1578489	.	-	0	ID=cds-CAL35751.1;Parent=gene-Cj1654c;Dbxref=EnsemblGenomes-Gn:Cj1654c,EnsemblGenomes-Tr:CAL35751,GOA:Q0P7X4,InterPro:IPR004670,InterPro:IPR023171,NCBI_GP:CAL35751.1;Name=CAL35751.1;Note=Original (2000) note: Cj1654c%2C nhaA2%2C probable Na(+)/H(+) antiporter%2C len: 389 aa%3B similar to e.g. NHAA_ECOLI Na(+)/H(+) antiporter 1 (388 aa)%2C fasta scores%3B opt: 1161 z-score: 1325.3 E(): 0%2C 45.3%25 identity in 382 aa overlap. No Hp ortholog. Also similar to Cj1655c nhaA1 (56.3%25 identity in 378 aa overlap)%3B~Updated (2006) note: Pfam domain PF06965 Na+/H+ antiporter identified within CDS. Further support given to product function. Also%2C eleven probable transmembrane helices predicted by TMHMM2.0. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Transport/binding proteins - Cations%3B~PMID:1645730%2C PMID:1657980%2C PMID:9507001;gbkey=CDS;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;product=Na(+)/H(+) antiporter;protein_id=CAL35751.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1577329	1577397	.	-	.	ID=id-Cj1654c;Note=11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34%2C 61-83%2C 96-118%2C 128-145%2C157-179%2C 183-205%2C 218-240%2C 260-282%2C 293-315%2C 330-352 and 365-387;gbkey=misc_feature;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;part=1/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1577434	1577502	.	-	.	ID=id-Cj1654c;Note=11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34%2C 61-83%2C 96-118%2C 128-145%2C157-179%2C 183-205%2C 218-240%2C 260-282%2C 293-315%2C 330-352 and 365-387;gbkey=misc_feature;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;part=2/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1577545	1577613	.	-	.	ID=id-Cj1654c;Note=11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34%2C 61-83%2C 96-118%2C 128-145%2C157-179%2C 183-205%2C 218-240%2C 260-282%2C 293-315%2C 330-352 and 365-387;gbkey=misc_feature;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;part=3/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1577644	1577712	.	-	.	ID=id-Cj1654c;Note=11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34%2C 61-83%2C 96-118%2C 128-145%2C157-179%2C 183-205%2C 218-240%2C 260-282%2C 293-315%2C 330-352 and 365-387;gbkey=misc_feature;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;part=4/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1577770	1577838	.	-	.	ID=id-Cj1654c;Note=11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34%2C 61-83%2C 96-118%2C 128-145%2C157-179%2C 183-205%2C 218-240%2C 260-282%2C 293-315%2C 330-352 and 365-387;gbkey=misc_feature;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;part=5/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1577875	1577943	.	-	.	ID=id-Cj1654c;Note=11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34%2C 61-83%2C 96-118%2C 128-145%2C157-179%2C 183-205%2C 218-240%2C 260-282%2C 293-315%2C 330-352 and 365-387;gbkey=misc_feature;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;part=6/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1577953	1578021	.	-	.	ID=id-Cj1654c;Note=11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34%2C 61-83%2C 96-118%2C 128-145%2C157-179%2C 183-205%2C 218-240%2C 260-282%2C 293-315%2C 330-352 and 365-387;gbkey=misc_feature;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;part=7/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1578055	1578108	.	-	.	ID=id-Cj1654c;Note=11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34%2C 61-83%2C 96-118%2C 128-145%2C157-179%2C 183-205%2C 218-240%2C 260-282%2C 293-315%2C 330-352 and 365-387;gbkey=misc_feature;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;part=8/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1578136	1578204	.	-	.	ID=id-Cj1654c;Note=11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34%2C 61-83%2C 96-118%2C 128-145%2C157-179%2C 183-205%2C 218-240%2C 260-282%2C 293-315%2C 330-352 and 365-387;gbkey=misc_feature;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;part=9/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1578241	1578309	.	-	.	ID=id-Cj1654c;Note=11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34%2C 61-83%2C 96-118%2C 128-145%2C157-179%2C 183-205%2C 218-240%2C 260-282%2C 293-315%2C 330-352 and 365-387;gbkey=misc_feature;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;part=10/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1578388	1578456	.	-	.	ID=id-Cj1654c;Note=11 probable transmembrane helices predicted for Cj1654c by TMHMM2.0 at aa 12-34%2C 61-83%2C 96-118%2C 128-145%2C157-179%2C 183-205%2C 218-240%2C 260-282%2C 293-315%2C 330-352 and 365-387;gbkey=misc_feature;gene=nhaA2;inference=protein motif:TMHMM:2.0;locus_tag=Cj1654c;part=11/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1577344	1578468	.	-	.	ID=id-Cj1654c-2;Note=HMMPfam hit to PF06965%2C Na+/H+ antiporter%2C score 2.2e-229;gbkey=misc_feature;gene=nhaA2;inference=protein motif:Pfam:PF06965;locus_tag=Cj1654c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1578292	1578324	.	-	.	ID=id-Cj1654c-3;Note=PS00284 Serpins signature;gbkey=misc_feature;gene=nhaA2;inference=protein motif:Prosite:PS00284;locus_tag=Cj1654c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1578486	1579634	.	-	.	ID=gene-Cj1655c;Name=nhaA1;gbkey=Gene;gene=nhaA1;gene_biotype=protein_coding;locus_tag=Cj1655c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1578486	1579634	.	-	0	ID=cds-CAL35752.1;Parent=gene-Cj1655c;Dbxref=EnsemblGenomes-Gn:Cj1655c,EnsemblGenomes-Tr:CAL35752,GOA:Q0P7X3,InterPro:IPR004670,InterPro:IPR023171,NCBI_GP:CAL35752.1;Name=CAL35752.1;Note=Original (2000) note: Cj1655c%2C nhaA1%2C probable Na(+)/H(+) antiporter%2C len: 382 aa%3B similar to e.g. NHAA_ECOLI Na(+)/H(+) antiporter 1 (388 aa)%2C fasta scores%3B opt: 1165 z-score: 1343.6 E(): 0%2C 47.3%25 identity in 383 aa overlap. 41.0%25 identity to HP1552. Also similar to Cj1654c nhaA2 (56.3%25 identity in 378 aa overlap)%3B~Updated (2006) note: Pfam domain PF06965 Na+/H+ antiporter identified within CDS. Further support given to product function. Also%2C ten probable transmembrane helices predicted by TMHMM2.0. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - Transport/binding proteins - Cations%3B~PMID:1645730%2C PMID:1657980%2C PMID:9507001;gbkey=CDS;gene=nhaA1;inference=protein motif:TMHMM:2.0;locus_tag=Cj1655c;product=Na(+)/H(+) antiporter;protein_id=CAL35752.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1578501	1578554	.	-	.	ID=id-Cj1655c;Note=10 probable transmembrane helices predicted for Cj1655c by TMHMM2.0 at aa 16-38%2C 58-80%2C 92-114%2C 124-146%2C153-175%2C 180-199%2C 206-228%2C 289-311%2C 324-346 and 361-378;gbkey=misc_feature;gene=nhaA1;inference=protein motif:TMHMM:2.0;locus_tag=Cj1655c;part=1/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1578597	1578665	.	-	.	ID=id-Cj1655c;Note=10 probable transmembrane helices predicted for Cj1655c by TMHMM2.0 at aa 16-38%2C 58-80%2C 92-114%2C 124-146%2C153-175%2C 180-199%2C 206-228%2C 289-311%2C 324-346 and 361-378;gbkey=misc_feature;gene=nhaA1;inference=protein motif:TMHMM:2.0;locus_tag=Cj1655c;part=2/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1578702	1578770	.	-	.	ID=id-Cj1655c;Note=10 probable transmembrane helices predicted for Cj1655c by TMHMM2.0 at aa 16-38%2C 58-80%2C 92-114%2C 124-146%2C153-175%2C 180-199%2C 206-228%2C 289-311%2C 324-346 and 361-378;gbkey=misc_feature;gene=nhaA1;inference=protein motif:TMHMM:2.0;locus_tag=Cj1655c;part=3/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1578951	1579019	.	-	.	ID=id-Cj1655c;Note=10 probable transmembrane helices predicted for Cj1655c by TMHMM2.0 at aa 16-38%2C 58-80%2C 92-114%2C 124-146%2C153-175%2C 180-199%2C 206-228%2C 289-311%2C 324-346 and 361-378;gbkey=misc_feature;gene=nhaA1;inference=protein motif:TMHMM:2.0;locus_tag=Cj1655c;part=4/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1579038	1579097	.	-	.	ID=id-Cj1655c;Note=10 probable transmembrane helices predicted for Cj1655c by TMHMM2.0 at aa 16-38%2C 58-80%2C 92-114%2C 124-146%2C153-175%2C 180-199%2C 206-228%2C 289-311%2C 324-346 and 361-378;gbkey=misc_feature;gene=nhaA1;inference=protein motif:TMHMM:2.0;locus_tag=Cj1655c;part=5/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1579110	1579178	.	-	.	ID=id-Cj1655c;Note=10 probable transmembrane helices predicted for Cj1655c by TMHMM2.0 at aa 16-38%2C 58-80%2C 92-114%2C 124-146%2C153-175%2C 180-199%2C 206-228%2C 289-311%2C 324-346 and 361-378;gbkey=misc_feature;gene=nhaA1;inference=protein motif:TMHMM:2.0;locus_tag=Cj1655c;part=6/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1579197	1579265	.	-	.	ID=id-Cj1655c;Note=10 probable transmembrane helices predicted for Cj1655c by TMHMM2.0 at aa 16-38%2C 58-80%2C 92-114%2C 124-146%2C153-175%2C 180-199%2C 206-228%2C 289-311%2C 324-346 and 361-378;gbkey=misc_feature;gene=nhaA1;inference=protein motif:TMHMM:2.0;locus_tag=Cj1655c;part=7/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1579293	1579361	.	-	.	ID=id-Cj1655c;Note=10 probable transmembrane helices predicted for Cj1655c by TMHMM2.0 at aa 16-38%2C 58-80%2C 92-114%2C 124-146%2C153-175%2C 180-199%2C 206-228%2C 289-311%2C 324-346 and 361-378;gbkey=misc_feature;gene=nhaA1;inference=protein motif:TMHMM:2.0;locus_tag=Cj1655c;part=8/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1579395	1579463	.	-	.	ID=id-Cj1655c;Note=10 probable transmembrane helices predicted for Cj1655c by TMHMM2.0 at aa 16-38%2C 58-80%2C 92-114%2C 124-146%2C153-175%2C 180-199%2C 206-228%2C 289-311%2C 324-346 and 361-378;gbkey=misc_feature;gene=nhaA1;inference=protein motif:TMHMM:2.0;locus_tag=Cj1655c;part=9/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1579521	1579589	.	-	.	ID=id-Cj1655c;Note=10 probable transmembrane helices predicted for Cj1655c by TMHMM2.0 at aa 16-38%2C 58-80%2C 92-114%2C 124-146%2C153-175%2C 180-199%2C 206-228%2C 289-311%2C 324-346 and 361-378;gbkey=misc_feature;gene=nhaA1;inference=protein motif:TMHMM:2.0;locus_tag=Cj1655c;part=10/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1578501	1579625	.	-	.	ID=id-Cj1655c-2;Note=HMMPfam hit to PF06965%2C Na+/H+ antiporter%2C score 1.1e-239;gbkey=misc_feature;gene=nhaA1;inference=protein motif:Pfam:PF06965;locus_tag=Cj1655c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1579777	1579959	.	-	.	ID=gene-Cj1656c;Name=Cj1656c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1656c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1579777	1579959	.	-	0	ID=cds-CAL35753.1;Parent=gene-Cj1656c;Dbxref=EnsemblGenomes-Gn:Cj1656c,EnsemblGenomes-Tr:CAL35753,InterPro:IPR025906,UniProtKB/TrEMBL:Q0P7X2,NCBI_GP:CAL35753.1;Name=CAL35753.1;Note=Original (2000) note: Cj1656c%2C unknown%2C len: 180 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj1656c;product=hypothetical protein Cj1656c;protein_id=CAL35753.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1580836	1582926	.	+	.	ID=gene-Cj1658;Name=Cj1658;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1658
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1580836	1582926	.	+	0	ID=cds-CAL35754.1;Parent=gene-Cj1658;Dbxref=EnsemblGenomes-Gn:Cj1658,EnsemblGenomes-Tr:CAL35754,GOA:Q0P7X1,InterPro:IPR004923,UniProtKB/TrEMBL:Q0P7X1,NCBI_GP:CAL35754.1;Name=CAL35754.1;Note=Original (2000) note: Cj1658%2C probable integral membrane protein%2C len: 696 aa%3B similar to TR:CAA21360 (EMBL:AL031866) Yersinia pestis ORF37 upstream of p19 homolog in 102 kbases unstable region (639 aa)%2C fasta scores%3B opt: 1055 z-score: 1112.1 E(): 0%2C 31.6%25 identity in 706 aa overlap. Contains possible N-terminal signal sequence%2C followed by non-membrane domain with three coiled-coil regions to aa 440. C-terminal domain contains six possible membrane spanning sequences%2C and is similar to hypothetical membrane proteins e.g. YWBL_BACSU (481 aa)%2C fasta scores%3B opt: 439 z-score: 466.4 E(): 1.2e-18%2C26.5%25 identity in 449 aa overlap. No Hp match%3B~Updated (2006) note: Pfam domain PF03239 Iron permease FTR1 family identified within CDS. Also%2C seven probable transmembrane helices predicted by TMHMM2.0. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet%2C so putative kept within product function. Literature search identified paper giving further clues to product function. Functional classification -Transport/binding proteins - Cations%3B~PMID:15632442;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1658;product=putative iron permease;protein_id=CAL35754.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1581730	1582671	.	+	.	ID=id-Cj1658;Note=HMMPfam hit to PF03239%2C Iron permease FTR1 family%2Cscore 2.3e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF03239;locus_tag=Cj1658
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1582150	1582209	.	+	.	ID=id-Cj1658-2;Note=7 probable transmembrane helices predicted for Cj1658 by TMHMM2.0 at aa 439-458%2C 470-492%2C 502-524%2C551-573%2C 583-604%2C 616-633 and 668-685;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1658;part=1/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1582243	1582311	.	+	.	ID=id-Cj1658-2;Note=7 probable transmembrane helices predicted for Cj1658 by TMHMM2.0 at aa 439-458%2C 470-492%2C 502-524%2C551-573%2C 583-604%2C 616-633 and 668-685;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1658;part=2/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1582339	1582407	.	+	.	ID=id-Cj1658-2;Note=7 probable transmembrane helices predicted for Cj1658 by TMHMM2.0 at aa 439-458%2C 470-492%2C 502-524%2C551-573%2C 583-604%2C 616-633 and 668-685;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1658;part=3/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1582486	1582554	.	+	.	ID=id-Cj1658-2;Note=7 probable transmembrane helices predicted for Cj1658 by TMHMM2.0 at aa 439-458%2C 470-492%2C 502-524%2C551-573%2C 583-604%2C 616-633 and 668-685;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1658;part=4/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1582582	1582647	.	+	.	ID=id-Cj1658-2;Note=7 probable transmembrane helices predicted for Cj1658 by TMHMM2.0 at aa 439-458%2C 470-492%2C 502-524%2C551-573%2C 583-604%2C 616-633 and 668-685;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1658;part=5/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1582681	1582734	.	+	.	ID=id-Cj1658-2;Note=7 probable transmembrane helices predicted for Cj1658 by TMHMM2.0 at aa 439-458%2C 470-492%2C 502-524%2C551-573%2C 583-604%2C 616-633 and 668-685;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1658;part=6/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1582837	1582890	.	+	.	ID=id-Cj1658-2;Note=7 probable transmembrane helices predicted for Cj1658 by TMHMM2.0 at aa 439-458%2C 470-492%2C 502-524%2C551-573%2C 583-604%2C 616-633 and 668-685;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1658;part=7/7;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1582923	1583462	.	+	.	ID=gene-Cj1659;Name=p19;gbkey=Gene;gene=p19;gene_biotype=protein_coding;locus_tag=Cj1659
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1582923	1583462	.	+	0	ID=cds-CAL35755.1;Parent=gene-Cj1659;Dbxref=EnsemblGenomes-Gn:Cj1659,EnsemblGenomes-Tr:CAL35755,InterPro:IPR018470,UniProtKB/TrEMBL:Q0P7X0,NCBI_GP:CAL35755.1;Name=CAL35755.1;Note=Original (2000) note: Cj1659%2C p19%2C periplasmic protein%2C len: 179 aa%3B identical to TR:O07089 (EMBL:Y13641) C. jejuni 19 kDa periplamic protein (fragment) (152 aa)%2Cand similar to TR:CAA21359 (EMBL:AL031866) Yersinia pestis ORF36 in 102 kbases unstable region (175 aa)%2C fasta scores%3B opt: 677 z-score: 805.8 E(): 0%2C 57.9%25 identity in 178 aa overlap%2C and TA34_TREPA 34 kD membrane antigen precursor (pathogen-specific membrane antigen) (204 aa)%2Cfasta scores%3B opt: 353 z-score: 425.6 E(): 2.2e-16%2C 35.8%25 identity in 159 aa overlap. No Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Characterised within Campylobacter jejuni%2C so putative not added to product function. Paper identified linking protein to glycoprotein. Functional classification - Miscellaneous periplasmic proteins%3B~PMID:12186869%2C PMID:9766213;gbkey=CDS;gene=p19;inference=protein motif:TMHMM:2.0;locus_tag=Cj1659;product=periplasmic protein p19;protein_id=CAL35755.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1582935	1583003	.	+	.	ID=id-Cj1659;Note=1 probable transmembrane helix predicted for Cj1659 by TMHMM2.0 at aa 5-27;gbkey=misc_feature;gene=p19;inference=protein motif:TMHMM:2.0;locus_tag=Cj1659
gi|15791399|ref|NC_002163.1|	EMBL	gene	1583545	1584948	.	+	.	ID=gene-Cj1660;Name=Cj1660;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1660
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1583545	1584948	.	+	0	ID=cds-CAL35756.1;Parent=gene-Cj1660;Dbxref=EnsemblGenomes-Gn:Cj1660,EnsemblGenomes-Tr:CAL35756,InterPro:IPR007029,InterPro:IPR018758,UniProtKB/TrEMBL:Q0P7W9,NCBI_GP:CAL35756.1;Name=CAL35756.1;Note=Original (2000) note: Cj1660%2C probable integral membrane protein%2C len: 467 aa%3B 97.3%25 identity to TR:O07090 (EMBL:Y13641) C. jejuni hypothetical protein (fragment) (73 aa)%2C and similar to TR:CAA21358 (EMBL:AL031866) Yersinia pestis ORF35 in 102 kbases unstable region (469 aa)%2C fasta scores%3B opt: 687 z-score: 761.3 E(): 0%2C 27.5%25 identity in 465 aa overlap. No Hp match%3B~Updated (2006) note: Eight probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. Pfam domain PF04945 YHS domain identified within CDS. No specific characterisation with acceptable identity score has been carried out yet%2C so putative kept within product function. Literature search identified paper giving further clues to product function. Functional classification - Membranes%2C lipoproteins and porins%3B~PMID:15632442;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1660;product=putative integral membrane protein;protein_id=CAL35756.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1583554	1583607	.	+	.	ID=id-Cj1660;Note=8 probable transmembrane helices predicted for Cj1660 by TMHMM2.0 at aa 4-21%2C 28-50%2C 60-79%2C 86-105%2C120-142%2C 154-176%2C 196-218 and 244-266;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1660;part=1/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1583626	1583694	.	+	.	ID=id-Cj1660;Note=8 probable transmembrane helices predicted for Cj1660 by TMHMM2.0 at aa 4-21%2C 28-50%2C 60-79%2C 86-105%2C120-142%2C 154-176%2C 196-218 and 244-266;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1660;part=2/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1583722	1583781	.	+	.	ID=id-Cj1660;Note=8 probable transmembrane helices predicted for Cj1660 by TMHMM2.0 at aa 4-21%2C 28-50%2C 60-79%2C 86-105%2C120-142%2C 154-176%2C 196-218 and 244-266;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1660;part=3/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1583800	1583859	.	+	.	ID=id-Cj1660;Note=8 probable transmembrane helices predicted for Cj1660 by TMHMM2.0 at aa 4-21%2C 28-50%2C 60-79%2C 86-105%2C120-142%2C 154-176%2C 196-218 and 244-266;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1660;part=4/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1583902	1583970	.	+	.	ID=id-Cj1660;Note=8 probable transmembrane helices predicted for Cj1660 by TMHMM2.0 at aa 4-21%2C 28-50%2C 60-79%2C 86-105%2C120-142%2C 154-176%2C 196-218 and 244-266;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1660;part=5/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1584004	1584072	.	+	.	ID=id-Cj1660;Note=8 probable transmembrane helices predicted for Cj1660 by TMHMM2.0 at aa 4-21%2C 28-50%2C 60-79%2C 86-105%2C120-142%2C 154-176%2C 196-218 and 244-266;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1660;part=6/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1584130	1584198	.	+	.	ID=id-Cj1660;Note=8 probable transmembrane helices predicted for Cj1660 by TMHMM2.0 at aa 4-21%2C 28-50%2C 60-79%2C 86-105%2C120-142%2C 154-176%2C 196-218 and 244-266;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1660;part=7/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1584274	1584342	.	+	.	ID=id-Cj1660;Note=8 probable transmembrane helices predicted for Cj1660 by TMHMM2.0 at aa 4-21%2C 28-50%2C 60-79%2C 86-105%2C120-142%2C 154-176%2C 196-218 and 244-266;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1660;part=8/8;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1584772	1584906	.	+	.	ID=id-Cj1660-2;Note=HMMPfam hit to PF04945%2C YHS domain%2C score 1.1e-17;gbkey=misc_feature;inference=protein motif:Pfam:PF04945;locus_tag=Cj1660
gi|15791399|ref|NC_002163.1|	EMBL	gene	1584935	1586227	.	+	.	ID=gene-Cj1661;Name=Cj1661;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1661
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1584935	1586227	.	+	0	ID=cds-CAL35757.1;Parent=gene-Cj1661;Dbxref=EnsemblGenomes-Gn:Cj1661,EnsemblGenomes-Tr:CAL35757,GOA:Q0P7W8,InterPro:IPR003838,InterPro:IPR025857,UniProtKB/TrEMBL:Q0P7W8,NCBI_GP:CAL35757.1;Name=CAL35757.1;Note=Original (2000) note: Cj1661%2C possible ABC transport system permease protein%2C len: 430 aa%3B similar to hypothetical membrane proteins e.g. TR:CAA21357 (EMBL:AL031866) Yersinia pestis ORF34 in 102 kbases unstable region (430 aa)%2C fasta scores%3B opt: 929 z-score: 1043.7 E(): 0%2C 36.1%25 identity in 435 aa overlap%2C and to the membrane domain of hypothetical ACB-transporters e.g. YBJZ_ECOLI hypothetical ABC transporter ATP-binding protein (648 aa)%2C fasta scores%3B opt: 189 z-score: 214.0 E(): 0.00014%2C 22.0%25 identity in 241 aa overlap. No Hp match. Also similar to Cj1662 (28.1%25 identity in 437 aa overlap)%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. Pfam domain PF02687 Predicted permease identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet%2Cso putative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1661;product=possible ABC transport system permease;protein_id=CAL35757.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1584992	1585060	.	+	.	ID=id-Cj1661;Note=4 probable transmembrane helices predicted for Cj1661 by TMHMM2.0 at aa 20-42%2C 303-325%2C 359-381 and 391-413;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1661;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1585841	1585909	.	+	.	ID=id-Cj1661;Note=4 probable transmembrane helices predicted for Cj1661 by TMHMM2.0 at aa 20-42%2C 303-325%2C 359-381 and 391-413;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1661;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1586009	1586077	.	+	.	ID=id-Cj1661;Note=4 probable transmembrane helices predicted for Cj1661 by TMHMM2.0 at aa 20-42%2C 303-325%2C 359-381 and 391-413;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1661;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1586105	1586173	.	+	.	ID=id-Cj1661;Note=4 probable transmembrane helices predicted for Cj1661 by TMHMM2.0 at aa 20-42%2C 303-325%2C 359-381 and 391-413;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1661;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1585715	1586203	.	+	.	ID=id-Cj1661-2;Note=HMMPfam hit to PF02687%2C Predicted permease%2C score 2.3e-29;gbkey=misc_feature;inference=protein motif:Pfam:PF02687;locus_tag=Cj1661
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1586135	1586167	.	+	.	ID=id-Cj1661-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1661
gi|15791399|ref|NC_002163.1|	EMBL	gene	1586217	1587335	.	+	.	ID=gene-Cj1662;Name=Cj1662;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1662
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1586217	1587335	.	+	0	ID=cds-CAL35758.1;Parent=gene-Cj1662;Dbxref=EnsemblGenomes-Gn:Cj1662,EnsemblGenomes-Tr:CAL35758,GOA:Q0P7W7,InterPro:IPR003838,InterPro:IPR025857,UniProtKB/TrEMBL:Q0P7W7,NCBI_GP:CAL35758.1;Name=CAL35758.1;Note=Original (2000) note: Cj1662%2C probable integral membrane protein%2C len: 372 aa%3B similar to hypothetical membrane proteins e.g. TR:CAA21356 (EMBL:AL031866) Yersinia pestis ORF33 in 102 kbases unstable region (387 aa)%2C fasta scores%3B opt: 637 z-score: 710.8 E(): 2.9e-32%2C32.5%25 identity in 375 aa overlap. No Hp match. Also similar to Cj1661 (28.1%25 identity in 437 aa overlap). Possibly a permease protein for an ABC transport system%3B ABC-binding protein is downstream%3B~Updated (2006) note: Four probable transmembrane helices predicted by TMHMM2.0. Pfam domain PF02687 Predicted permease identified within CDS. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet%2Cso putative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1662;product=putative integral membrane protein;protein_id=CAL35758.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1586277	1586345	.	+	.	ID=id-Cj1662;Note=4 probable transmembrane helices predicted for Cj1662 by TMHMM2.0 at aa 21-43%2C 250-272%2C 301-323 and 333-355;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1662;part=1/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1586964	1587032	.	+	.	ID=id-Cj1662;Note=4 probable transmembrane helices predicted for Cj1662 by TMHMM2.0 at aa 21-43%2C 250-272%2C 301-323 and 333-355;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1662;part=2/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1587117	1587185	.	+	.	ID=id-Cj1662;Note=4 probable transmembrane helices predicted for Cj1662 by TMHMM2.0 at aa 21-43%2C 250-272%2C 301-323 and 333-355;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1662;part=3/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1587213	1587281	.	+	.	ID=id-Cj1662;Note=4 probable transmembrane helices predicted for Cj1662 by TMHMM2.0 at aa 21-43%2C 250-272%2C 301-323 and 333-355;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1662;part=4/4;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1586820	1587311	.	+	.	ID=id-Cj1662-2;Note=HMMPfam hit to PF02687%2C Predicted permease%2C score 1.4e-30;gbkey=misc_feature;inference=protein motif:Pfam:PF02687;locus_tag=Cj1662
gi|15791399|ref|NC_002163.1|	EMBL	gene	1587332	1587985	.	+	.	ID=gene-Cj1663;Name=Cj1663;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1663
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1587332	1587985	.	+	0	ID=cds-CAL35759.1;Parent=gene-Cj1663;Dbxref=EnsemblGenomes-Gn:Cj1663,EnsemblGenomes-Tr:CAL35759,GOA:Q0P7W6,InterPro:IPR003439,InterPro:IPR003593,InterPro:IPR017871,InterPro:IPR027417,UniProtKB/TrEMBL:Q0P7W6,NCBI_GP:CAL35759.1;Name=CAL35759.1;Note=Original (2000) note: Cj1663%2C probable ABC transport system ATP-binding protein%2C len: 217 aa%3B similar to many e.g. TR:CAA21355(EMBL:AL031866) Yersinia pestis ORF32 in 102 kbases unstable region (237 aa)%2C fasta scores%3B opt: 859 z-score: 985.9 E(): 0%2C 60.8%25 identity in 209 aa overlap%2C and GLNQ_ECOLI glutamine transport ATP-binding protein (240 aa)%2C fasta scores%3B opt: 555 z-score: 641.1 E(): 2.2e-28%2C 43.5%25 identity in 214 aa overlap. No Hp ortholog. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2C PS00211 ABC transporters family signature%2C and Pfam match to entry PF00005 ABC_tran%2C ABC transporters%3B~Updated (2006) note: Putative kept within product function as similar to more than one transport system. Functional classification - Transport/binding proteins -Other;gbkey=CDS;inference=protein motif:Prosite:PS00211;locus_tag=Cj1663;product=putative ABC transport system ATP-binding protein;protein_id=CAL35759.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1587425	1587973	.	+	.	ID=id-Cj1663;Note=HMMPfam hit to PF00005%2C ABC transporter%2C score 1.1e-63;gbkey=misc_feature;inference=protein motif:Pfam:PF00005;locus_tag=Cj1663
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1587446	1587469	.	+	.	ID=id-Cj1663-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;inference=protein motif:Prosite:PS00017;locus_tag=Cj1663
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1587749	1587793	.	+	.	ID=id-Cj1663-3;Note=PS00211 ABC transporters family signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00211;locus_tag=Cj1663
gi|15791399|ref|NC_002163.1|	EMBL	gene	1587982	1588470	.	+	.	ID=gene-Cj1664;Name=Cj1664;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1664
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1587982	1588470	.	+	0	ID=cds-CAL35760.1;Parent=gene-Cj1664;Dbxref=EnsemblGenomes-Gn:Cj1664,EnsemblGenomes-Tr:CAL35760,GOA:Q0P7W5,InterPro:IPR012336,InterPro:IPR013740,InterPro:IPR017937,UniProtKB/TrEMBL:Q0P7W5,NCBI_GP:CAL35760.1;Name=CAL35760.1;Note=Original (2000) note: Cj1664%2C possible periplasmic thiredoxin%2C len: 162 aa%3B similar to e.g. TR:CAA21354 (EMBL:AL031866) Yersinia pestis ORF31 in 102 kbases unstable region (165 aa)%2C fast scores%3B opt: 225 z-score: 278.4 E(): 3.5e-08%2C 33.3%25 identity in 141 aa overlap%2C and weakly to RESA_BACSU RESA protein (contains thiredoxin domain) (181 aa)%2C fasta scores%3B opt: 124 z-score: 159.5 E(): 0.15%2C 25.0%25 identity in 112 aa overlap. No Hp match. Contains PS00194 Thioredoxin family active site and probable N-terminal signal sequence%3B~Updated (2006) note: Specific characterisation with acceptable identity score has not been carried out yet. Putative kept within product function. Literature search identified paper giving further clues to product function (PMID:15632442). Functional classification - Energy metabolism - Respiration - Electron transport%3B~PMID:15322369%2C PMID:15632442;gbkey=CDS;inference=protein motif:Prosite:PS00194;locus_tag=Cj1664;product=putative periplasmic thiredoxin;protein_id=CAL35760.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1588147	1588203	.	+	.	ID=id-Cj1664;Note=PS00194 Thioredoxin family active site;gbkey=misc_feature;inference=protein motif:Prosite:PS00194;locus_tag=Cj1664
gi|15791399|ref|NC_002163.1|	EMBL	gene	1588431	1588934	.	+	.	ID=gene-Cj1665;Name=Cj1665;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1665
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1588431	1588934	.	+	0	ID=cds-CAL35761.1;Parent=gene-Cj1665;Dbxref=EnsemblGenomes-Gn:Cj1665,EnsemblGenomes-Tr:CAL35761,InterPro:IPR012336,UniProtKB/TrEMBL:Q0P7W4,NCBI_GP:CAL35761.1;Name=CAL35761.1;Note=Original (2000) note: Cj1665%2C possible lipoprotein thiredoxin%2C len: 167 aa%3B similar to TR:O33920 (EMBL:U75949) Salmonella typhimurium suppressor for copper-sensitivity D (168 aa)%2C fasta scores%3B opt: 121 z-score: 163.1 E(): 0.093%2C 27.5%25 identity in 153 aa overlap%2C and weakly to many thiredoxins%2C e.g. THIO_BUCAP thioredoxin (108 aa)%2C fasta scores%3B opt: 108 z-score: 149.9 E(): 0.5%2C 28.6%25 identity in 112 aa overlap. Contains probable N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. No Hp match%3B~Updated (2006) note: Specific characterisation with acceptable identity score has not been carried out yet. Putative kept within product function. Literature search identified paper giving further clues to product function (PMID:15632442). Functional classification - Energy metabolism - Respiration - Electron transport%3B~PMID:15632442;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1665;product=putative lipoprotein thiredoxin;protein_id=CAL35761.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1588464	1588496	.	+	.	ID=id-Cj1665;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1665
gi|15791399|ref|NC_002163.1|	EMBL	gene	1588944	1589381	.	-	.	ID=gene-Cj1666c;Name=Cj1666c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1666c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1588944	1589381	.	-	0	ID=cds-CAL35762.1;Parent=gene-Cj1666c;Dbxref=EnsemblGenomes-Gn:Cj1666c,EnsemblGenomes-Tr:CAL35762,InterPro:IPR007332,UniProtKB/TrEMBL:Q0P7W3,NCBI_GP:CAL35762.1;Name=CAL35762.1;Note=Original (2000) note: Cj1666c%2C probable periplasmic protein%2C len: 145 aa%3B similar to TR:AAD11752 (EMBL:AF067954) Salmonella typhimurium ORF105 in silver resistance cluster (105 aa)%2C fasta scores%3B opt: 244 z-score: 293.2 E(): 5.2e-09%2C 39.2%25 identity in 102 aa overlap%2C and TR:O67205 (EMBL:AE000724) Aquifex aeolicus AQ_1129 (122 aa)%2C fats scores%3B opt: 231 z-score: 277.7 E(): 3.8e-08%2C 33.3%25 identity in 117 aa overlap. No Hp match. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Pfam domain PF04214 Protein of unknown function%2C DUF identified within CDS. Functional classification - Miscellaneous periplasmic proteins;gbkey=CDS;inference=protein motif:Pfam:PF04214;locus_tag=Cj1666c;product=putative periplasmic protein;protein_id=CAL35762.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1589004	1589270	.	-	.	ID=id-Cj1666c;Note=HMMPfam hit to PF04214%2C Protein of unknown function%2C DUF%2C score 4.7e-60;gbkey=misc_feature;inference=protein motif:Pfam:PF04214;locus_tag=Cj1666c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1589462	1589614	.	-	.	ID=gene-Cj1667c;Name=Cj1667c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1667c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1589462	1589614	.	-	0	ID=cds-CAL35763.1;Parent=gene-Cj1667c;Dbxref=EnsemblGenomes-Gn:Cj1667c,EnsemblGenomes-Tr:CAL35763,UniProtKB/TrEMBL:Q0P7W2,NCBI_GP:CAL35763.1;Name=CAL35763.1;Note=Original (2000) note: Cj1667c%2C repA protein homolog%2C len: 50 aa%3B highly similar to TR:Q46016 (EMBL:X82080) Campylobacter coli plasmid PCCT2 repA protein (26 aa)%2C fast scores%3B opt: 93 z-score: 179.3 E(): 0.011%2C 57.7%25 identity in 26 aa overlap. No Hp match. This gene sequence is < 19%25 G+C and has an atypical positional base preference. Functional classification - Plasmid related functions;gbkey=CDS;locus_tag=Cj1667c;product=RepA protein homolog;protein_id=CAL35763.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1589680	1590096	.	-	.	ID=gene-Cj1668c;Name=Cj1668c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1668c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1589680	1590096	.	-	0	ID=cds-CAL35764.1;Parent=gene-Cj1668c;Dbxref=EnsemblGenomes-Gn:Cj1668c,EnsemblGenomes-Tr:CAL35764,UniProtKB/TrEMBL:Q0P7W1,NCBI_GP:CAL35764.1;Name=CAL35764.1;Note=Original (2000) note: Cj1668c%2C probable periplasmic protein%2C len: 138 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1668c;product=putative periplasmic protein;protein_id=CAL35764.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1590019	1590087	.	-	.	ID=id-Cj1668c;Note=1 probable transmembrane helix predicted for Cj1668c by TMHMM2.0 at aa 4-26;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1668c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1590271	1590355	.	-	.	ID=gene-tRNA-Leu-4;Name=tRNA-Leu;gbkey=Gene;gene=tRNA-Leu;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1590271	1590355	.	-	.	ID=rna-tRNA-Leu-4;Parent=gene-tRNA-Leu-4;Note=tRNA Leu anticodon TAG%2C Cove score 76.79;gbkey=tRNA;gene=tRNA-Leu;product=tRNA-Leu
gi|15791399|ref|NC_002163.1|	EMBL	exon	1590271	1590355	.	-	.	ID=exon-tRNA-Leu-4-1;Parent=rna-tRNA-Leu-4;Note=tRNA Leu anticodon TAG%2C Cove score 76.79;gbkey=tRNA;gene=tRNA-Leu;product=tRNA-Leu
gi|15791399|ref|NC_002163.1|	EMBL	gene	1590360	1590436	.	-	.	ID=gene-tRNA-Arg-3;Name=tRNA-Arg;gbkey=Gene;gene=tRNA-Arg;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1590360	1590436	.	-	.	ID=rna-tRNA-Arg-3;Parent=gene-tRNA-Arg-3;Note=tRNA Arg anticodon TCT%2C Cove score 87.94;gbkey=tRNA;gene=tRNA-Arg;product=tRNA-Arg
gi|15791399|ref|NC_002163.1|	EMBL	exon	1590360	1590436	.	-	.	ID=exon-tRNA-Arg-3-1;Parent=rna-tRNA-Arg-3;Note=tRNA Arg anticodon TCT%2C Cove score 87.94;gbkey=tRNA;gene=tRNA-Arg;product=tRNA-Arg
gi|15791399|ref|NC_002163.1|	EMBL	gene	1590451	1590527	.	-	.	ID=gene-tRNA-Arg-4;Name=tRNA-Arg;gbkey=Gene;gene=tRNA-Arg;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1590451	1590527	.	-	.	ID=rna-tRNA-Arg-4;Parent=gene-tRNA-Arg-4;Note=tRNA Arg anticodon TCG%2C Cove score 83.86;gbkey=tRNA;gene=tRNA-Arg;product=tRNA-Arg
gi|15791399|ref|NC_002163.1|	EMBL	exon	1590451	1590527	.	-	.	ID=exon-tRNA-Arg-4-1;Parent=rna-tRNA-Arg-4;Note=tRNA Arg anticodon TCG%2C Cove score 83.86;gbkey=tRNA;gene=tRNA-Arg;product=tRNA-Arg
gi|15791399|ref|NC_002163.1|	EMBL	gene	1590531	1590607	.	-	.	ID=gene-tRNA-His;Name=tRNA-His;gbkey=Gene;gene=tRNA-His;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1590531	1590607	.	-	.	ID=rna-tRNA-His;Parent=gene-tRNA-His;Note=tRNA His anticodon GTG%2C Cove score 77.53;gbkey=tRNA;gene=tRNA-His;product=tRNA-His
gi|15791399|ref|NC_002163.1|	EMBL	exon	1590531	1590607	.	-	.	ID=exon-tRNA-His-1;Parent=rna-tRNA-His;Note=tRNA His anticodon GTG%2C Cove score 77.53;gbkey=tRNA;gene=tRNA-His;product=tRNA-His
gi|15791399|ref|NC_002163.1|	EMBL	gene	1590632	1590709	.	-	.	ID=gene-tRNA-Pro;Name=tRNA-Pro;gbkey=Gene;gene=tRNA-Pro;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1590632	1590709	.	-	.	ID=rna-tRNA-Pro;Parent=gene-tRNA-Pro;Note=tRNA Pro anticodon TGG%2C Cove score 88.47;gbkey=tRNA;gene=tRNA-Pro;product=tRNA-Pro
gi|15791399|ref|NC_002163.1|	EMBL	exon	1590632	1590709	.	-	.	ID=exon-tRNA-Pro-1;Parent=rna-tRNA-Pro;Note=tRNA Pro anticodon TGG%2C Cove score 88.47;gbkey=tRNA;gene=tRNA-Pro;product=tRNA-Pro
gi|15791399|ref|NC_002163.1|	EMBL	gene	1590752	1591600	.	-	.	ID=gene-Cj1669c;Name=Cj1669c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1669c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1590752	1591600	.	-	0	ID=cds-CAL35765.1;Parent=gene-Cj1669c;Dbxref=EnsemblGenomes-Gn:Cj1669c,EnsemblGenomes-Tr:CAL35765,GOA:Q0P7W0,InterPro:IPR012310,InterPro:IPR012340,InterPro:IPR016059,InterPro:IPR029319,UniProtKB/TrEMBL:Q0P7W0,NCBI_GP:CAL35765.1;Name=CAL35765.1;Note=Original (2000) note: Cj1669c%2C probable ATP-dependent DNA ligase%2C len: 282 aa%3B similar to DNLI_HAEIN DNA ligase (EC 6.5.1.1) (268 aa)%2C fasta scores%3B opt: 484 z-score: 564.1 E(): 4.3e-24%2C 43.4%25 identity in 279 aa overlap%2C and weakly to several bacteriphage DNA ligases e.g. DNLI_ASFM2 DNA ligase (EC 6.5.1.1) (419 aa)%2Cfasta scores%3B opt: 186 z-score: 219.5 E(): 6.6e-05%2C 29.0%25 identity in 162 aa overlap. No Hp match. No similarity to Cj. jejuni ligA Cj0586. Contains PS00333 ATP-dependent DNA ligase signature 2%2C and Pfam match to entry PF01068 DNA_ligase%3B~Updated (2006) note: Characterisation within Haemophilus influenzae with acceptable identity score. Putative kept within product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:9060431;gbkey=CDS;inference=protein motif:Prosite:PS00333;locus_tag=Cj1669c;product=putative ATP-dependent DNA ligase;protein_id=CAL35765.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1591004	1591555	.	-	.	ID=id-Cj1669c;Note=HMMPfam hit to PF01068%2C ATP dependent DNA ligase domain%2C score 8.1e-08;gbkey=misc_feature;inference=protein motif:Pfam:PF01068;locus_tag=Cj1669c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1591004	1591075	.	-	.	ID=id-Cj1669c-2;Note=PS00333 ATP-dependent DNA ligase signature 2;gbkey=misc_feature;inference=protein motif:Prosite:PS00333;locus_tag=Cj1669c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1591600	1592262	.	-	.	ID=gene-Cj1670c;Name=cgpA;gbkey=Gene;gene=cgpA;gene_biotype=protein_coding;locus_tag=Cj1670c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1591600	1592262	.	-	0	ID=cds-CAL35766.1;Parent=gene-Cj1670c;Dbxref=EnsemblGenomes-Gn:Cj1670c,EnsemblGenomes-Tr:CAL35766,InterPro:IPR021731,UniProtKB/TrEMBL:Q0P7V9,NCBI_GP:CAL35766.1;Name=CAL35766.1;Note=Original (2000) note: Cj1670c%2C probable periplasmic protein%2C len: 220 aa%3B 27.3%25 identity to HP0156. Contains probable N-terminal signal sequence%3B~Updated (2006) note: Characterisation paper within Campylobacter jejuni identified new gene name. Papers identified linking protein to glycoprotein (PMID:12186869). Functional classification - Miscellaneous periplasmic proteins%3B~PMID:12186869%2C PMID:11985725;gbkey=CDS;gene=cgpA;locus_tag=Cj1670c;product=putative periplasmic protein;protein_id=CAL35766.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1592252	1592455	.	-	.	ID=gene-Cj1671c;Name=Cj1671c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1671c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1592252	1592455	.	-	0	ID=cds-CAL35767.1;Parent=gene-Cj1671c;Dbxref=EnsemblGenomes-Gn:Cj1671c,EnsemblGenomes-Tr:CAL35767,UniProtKB/TrEMBL:Q0P7V8,NCBI_GP:CAL35767.1;Name=CAL35767.1;Note=Original (2000) note: Cj1671c%2C unknown%2C len: 67 aa%3B 38.7%25 identity to HP0155%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Functional classification -Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1671c;product=hypothetical protein Cj1671c;protein_id=CAL35767.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1592393	1592452	.	-	.	ID=id-Cj1671c;Note=1 probable transmembrane helix predicted for Cj1671c by TMHMM2.0 at aa 2-21;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1671c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1592521	1593765	.	-	.	ID=gene-Cj1672c;Name=eno;gbkey=Gene;gene=eno;gene_biotype=protein_coding;locus_tag=Cj1672c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1592521	1593765	.	-	0	ID=cds-CAL35768.1;Parent=gene-Cj1672c;Dbxref=EnsemblGenomes-Gn:Cj1672c,EnsemblGenomes-Tr:CAL35768,GOA:P42448,InterPro:IPR000941,InterPro:IPR020809,InterPro:IPR020810,InterPro:IPR020811,InterPro:IPR029017,InterPro:IPR029065,PDB:3QN3,NCBI_GP:CAL35768.1;Name=CAL35768.1;Note=Original (2000) note: Cj1672c%2C eno%2C probable enolase%2C len: 414 aa%3B highly similar to many e.g. ENO_BACSU enolase (EC 4.2.1.11) (430 aa)%2C fasta scores%3B opt: 1474 z-score: 1669.8 E(): 0%2C 58.0%25 identity in 421 aa overlap. 63.3%25 identity to HP0154. Contains Pfam match to entry PF00113 enolase%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Energy metabolism - Glycolysis%3B~PMID:8021172%2C PMID:8988374;gbkey=CDS;gene=eno;inference=protein motif:Pfam:PF00113;locus_tag=Cj1672c;product=enolase;protein_id=CAL35768.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1592524	1593354	.	-	.	ID=id-Cj1672c;Note=HMMPfam hit to PF00113%2C Enolase%2C C-terminal TIM barrel domain%2C score 5e-135;gbkey=misc_feature;gene=eno;inference=protein motif:Pfam:PF00113;locus_tag=Cj1672c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1593367	1593759	.	-	.	ID=id-Cj1672c-2;Note=HMMPfam hit to PF03952%2C Enolase%2C N-terminal domain%2Cscore 8.4e-59;gbkey=misc_feature;gene=eno;inference=protein motif:Pfam:PF03952;locus_tag=Cj1672c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1593765	1594796	.	-	.	ID=gene-Cj1673c;Name=recA;gbkey=Gene;gene=recA;gene_biotype=protein_coding;locus_tag=Cj1673c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1593765	1594796	.	-	0	ID=cds-CAL35769.1;Parent=gene-Cj1673c;Dbxref=EnsemblGenomes-Gn:Cj1673c,EnsemblGenomes-Tr:CAL35769,GOA:Q0P7V6,InterPro:IPR003593,InterPro:IPR013765,InterPro:IPR020584,InterPro:IPR020587,InterPro:IPR020588,InterPro:IPR023400,InterPro:IPR027417,NCBI_GP:CAL35769.1;Name=CAL35769.1;Note=Original (2000) note: Cj1673c%2C recA%2C len: 343 aa%3B 99.7%25 identical to RECA_CAMJE RECA protein (343 aa)%2C and highly similar to many e.g. RECA_NEIGO RECA protein (348 aa)%2C fasts scores%3B opt: 1532 z-score: 1699.7 E(): 0%2C 64.9%25 identity in 345 aa overlap. 77.0%25 identity to HP0153. Contains PS00017 ATP/GTP-binding site motif A (P-loop)%2CPS00321 recA signature%2C and Pfam match to entry PF00154 recA%2C recA bacterial DNA recombination proteins%3B~Updated (2006) note: Characterised within Campylobacter jejuni with acceptable identity score. Putative not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:8300203;gbkey=CDS;gene=recA;inference=protein motif:Prosite:PS00321;locus_tag=Cj1673c;product=recA protein;protein_id=CAL35769.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1593810	1594778	.	-	.	ID=id-Cj1673c;Note=HMMPfam hit to PF00154%2C recA bacterial DNA recombination protein%2C score 1.2e-237;gbkey=misc_feature;gene=recA;inference=protein motif:Pfam:PF00154;locus_tag=Cj1673c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1594131	1594157	.	-	.	ID=id-Cj1673c-2;Note=PS00321 recA signature;gbkey=misc_feature;gene=recA;inference=protein motif:Prosite:PS00321;locus_tag=Cj1673c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1594581	1594604	.	-	.	ID=id-Cj1673c-3;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=recA;inference=protein motif:Prosite:PS00017;locus_tag=Cj1673c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1594902	1595762	.	+	.	ID=gene-Cj1674;Name=Cj1674;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1674
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1594902	1595762	.	+	0	ID=cds-CAL35770.1;Parent=gene-Cj1674;Dbxref=EnsemblGenomes-Gn:Cj1674,EnsemblGenomes-Tr:CAL35770,InterPro:IPR003773,UniProtKB/TrEMBL:Q0P7V5,NCBI_GP:CAL35770.1;Name=CAL35770.1;Note=Original (2000) note: Cj1674%2C unknown%2C len: 286 aa%3B similar to hypothetical proteins e.g. TR:AE000683 (EMBL:AE000683) (279 aa)%2C fasta scores%3B opt: 489 z-score: 599.3 E(): 4.7e-26%2C 35.4%25 identity in 260 aa overlap. 58.7%25 identity to HP0152%3B~Updated (2006) note: Pfam domain PF02642 Uncharacterized ACR%2C COG2107 identified within CDS. Conserved added to product function. Functional classification - Conserved hypothetical proteins;gbkey=CDS;inference=protein motif:Pfam:PF02642;locus_tag=Cj1674;product=conserved hypothetical protein Cj1674;protein_id=CAL35770.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1594908	1595696	.	+	.	ID=id-Cj1674;Note=HMMPfam hit to PF02642%2C Uncharacterized ACR%2CCOG2107%2C score 1.9e-107;gbkey=misc_feature;inference=protein motif:Pfam:PF02642;locus_tag=Cj1674
gi|15791399|ref|NC_002163.1|	EMBL	gene	1595774	1596043	.	+	.	ID=gene-Cj1675;Name=fliQ;gbkey=Gene;gene=fliQ;gene_biotype=protein_coding;locus_tag=Cj1675
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1595774	1596043	.	+	0	ID=cds-CAL35771.1;Parent=gene-Cj1675;Dbxref=EnsemblGenomes-Gn:Cj1675,EnsemblGenomes-Tr:CAL35771,GOA:Q0P7V4,InterPro:IPR002191,InterPro:IPR006305,UniProtKB/TrEMBL:Q0P7V4,NCBI_GP:CAL35771.1;Name=CAL35771.1;Note=Original (2000) note: Cj1675%2C fliQ%2C probable flagellar biosynthetic protein%2C len: 89 aa%3B simlar to many e.g. FLIQ_ECOLI flagellar biosynthetic protein FLIQ (89 aa)%2C fats scores%3B opt: 276 z-score: 370.5 E(): 2.6e-13%2C43.2%25 identity in 88 aa overlap. 60.5%25 identity to HP1419. Contains Pfam match to entry PF01313 Bac_export_3%2CBacterial export proteins%2C family 3%3B~Updated (2006) note: Two probable transmembrane helices predicted by TMHMM2.0. Characterised within Escherichia coli and Helicobacter pylori with acceptable identity scores. Putative not added to product function. Functional classification - Surface structures%3B~PMID:8282695%2C PMID:10234819;gbkey=CDS;gene=fliQ;inference=protein motif:TMHMM:2.0;locus_tag=Cj1675;product=flagellar biosynthetic protein;protein_id=CAL35771.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1595783	1596010	.	+	.	ID=id-Cj1675;Note=HMMPfam hit to PF01313%2C Bacterial export proteins%2Cfamily%2C score 4.6e-32;gbkey=misc_feature;gene=fliQ;inference=protein motif:Pfam:PF01313;locus_tag=Cj1675
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1595816	1595884	.	+	.	ID=id-Cj1675-2;Note=2 probable transmembrane helices predicted for Cj1675 by TMHMM2.0 at aa 15-37 and 49-71;gbkey=misc_feature;gene=fliQ;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1675;part=1/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1595918	1595986	.	+	.	ID=id-Cj1675-2;Note=2 probable transmembrane helices predicted for Cj1675 by TMHMM2.0 at aa 15-37 and 49-71;gbkey=misc_feature;gene=fliQ;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1675;part=2/2;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	gene	1596040	1596816	.	+	.	ID=gene-Cj1676;Name=murB;gbkey=Gene;gene=murB;gene_biotype=protein_coding;locus_tag=Cj1676
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1596040	1596816	.	+	0	ID=cds-CAL35772.1;Parent=gene-Cj1676;Dbxref=EnsemblGenomes-Gn:Cj1676,EnsemblGenomes-Tr:CAL35772,GOA:Q9PM01,InterPro:IPR003170,InterPro:IPR011601,InterPro:IPR016166,InterPro:IPR016169,NCBI_GP:CAL35772.1;Name=CAL35772.1;Note=Original (2000) note: Cj1676%2C murB%2C possible UDP-N-acetylenolpyruvoylglucosamine reductase%2C len: 258 aa%3B some simlarity to many e.g. MURB_BACSU UDP-N-acetylenolpyruvoylglucosamine reductase (EC 1.1.1.158) (303 aa)%2C opt: 220 z-score: 268.9 E(): 1.2e-07%2C29.7%25 identity in 256 aa overlap. 40.0%25 identity to HP1418%3B~Updated (2006) note: Pfam domain PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase identified within CDS. Further support given to product function. Characterised within Bacillus subtilis with marginal identity score. Putative removed from product function. Functional classification - Murein sacculus and peptidoglycan%3B~PMID:7590298%2C PMID:1311302%2C PMID:8448160;gbkey=CDS;gene=murB;inference=protein motif:Pfam:PF02873;locus_tag=Cj1676;product=UDP-N-acetylenolpyruvoylglucosamine reductase;protein_id=CAL35772.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1596532	1596813	.	+	.	ID=id-Cj1676;Note=HMMPfam hit to PF02873%2CUDP-N-acetylenolpyruvoylglucosamine reductas%2C score 6.6e-30;gbkey=misc_feature;gene=murB;inference=protein motif:Pfam:PF02873;locus_tag=Cj1676
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	1596867	1596953	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1596867..1596953;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	1597008	1597589	.	+	.	ID=gene-Cj1677;Name=Cj1677;gbkey=Gene;gene_biotype=protein_coding;is_ordered=true;locus_tag=Cj1677;part=1/2
gi|15791399|ref|NC_002163.1|	EMBL	gene	1597592	1600372	.	+	.	ID=gene-Cj1677;Name=Cj1677;gbkey=Gene;gene_biotype=protein_coding;is_ordered=true;locus_tag=Cj1677;part=2/2
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1597008	1597589	.	+	0	ID=cds-CAL35773.1;Parent=gene-Cj1677;Dbxref=EnsemblGenomes-Gn:Cj1677,EnsemblGenomes-Tr:CAL35773,InterPro:IPR005546,UniProtKB/TrEMBL:Q0P7V2,NCBI_GP:CAL35773.1;Name=CAL35773.1;Note=Original (2000) note: Cj1678%2C possible lipoprotein%2Clen: 928 aa%3B no Hp match. Contains a poly-T tract at aa 1 which%2C if variable%2C would allow translation from Cj1677 (which contains a signal sequence and lipid attachment site). Otherwise translation could start at aa 46. Highly similar to Cj0629 (90.7%25 identity in 901 aa overlap). Cj0629 has a non-variable poly-T tract in an quivalent position%2C which could allow translation from Cj0628 (similar to Cj1677)%3B~Original (2000) note: Cj1677%2C probable lipoprotein%2Clen: 216 aa%3B no Hp match. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. There is a poly-T tract at the C-terminus (aa 194) which%2C if variable%2C would allow translation into the downstream ORF Cj1678. Similar to Cj0628 which does have a variable poly-T tract at the smae position which could allow translation into Cj0629 (highly similar to Cj1678)%3B~Updated (2006) note: Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj1677 and Cj1678 as seperate CDSs. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1677;product=putative lipoprotein;protein_id=CAL35773.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1597592	1600372	.	+	0	ID=cds-CAL35773.1;Parent=gene-Cj1677;Dbxref=EnsemblGenomes-Gn:Cj1677,EnsemblGenomes-Tr:CAL35773,InterPro:IPR005546,UniProtKB/TrEMBL:Q0P7V2,NCBI_GP:CAL35773.1;Name=CAL35773.1;Note=Original (2000) note: Cj1678%2C possible lipoprotein%2Clen: 928 aa%3B no Hp match. Contains a poly-T tract at aa 1 which%2C if variable%2C would allow translation from Cj1677 (which contains a signal sequence and lipid attachment site). Otherwise translation could start at aa 46. Highly similar to Cj0629 (90.7%25 identity in 901 aa overlap). Cj0629 has a non-variable poly-T tract in an quivalent position%2C which could allow translation from Cj0628 (similar to Cj1677)%3B~Original (2000) note: Cj1677%2C probable lipoprotein%2Clen: 216 aa%3B no Hp match. Contains N-terminal signal sequence and appropriately positioned PS00013 Prokaryotic membrane lipoprotein lipid attachment site. There is a poly-T tract at the C-terminus (aa 194) which%2C if variable%2C would allow translation into the downstream ORF Cj1678. Similar to Cj0628 which does have a variable poly-T tract at the smae position which could allow translation into Cj0629 (highly similar to Cj1678)%3B~Updated (2006) note: Coding sequences have been merged to reflect the complete amino acid sequence for this gene regardless of phase. Previous annotation gave Cj1677 and Cj1678 as seperate CDSs. Merging of these CDSs has lead to loss of the downstream CDS. Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;inference=protein motif:Prosite:PS00013;locus_tag=Cj1677;product=putative lipoprotein;protein_id=CAL35773.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1599548	1600345	.	+	.	ID=id-Cj1677;Note=HMMPfam hit to PF03797%2C Autotransporter beta-domain%2C score 5.9e-38;gbkey=misc_feature;inference=protein motif:Pfam:PF03797;locus_tag=Cj1677
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1597585	1597591	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1597585..1597591;Note=T(7);gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	repeat_region	1598049	1600469	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1598049..1600469;Note=repeat 2: identical to 588981..591400;gbkey=repeat_region
gi|15791399|ref|NC_002163.1|	EMBL	gene	1600574	1602328	.	+	.	ID=gene-Cj1679;Name=Cj1679;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1679
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1600574	1602328	.	+	0	ID=cds-CAL35774.1;Parent=gene-Cj1679;Dbxref=EnsemblGenomes-Gn:Cj1679,EnsemblGenomes-Tr:CAL35774,InterPro:IPR011990,InterPro:IPR013026,InterPro:IPR019734,UniProtKB/TrEMBL:Q0P7V1,NCBI_GP:CAL35774.1;Name=CAL35774.1;Note=Original (2000) note: Cj1679%2C unknown%2C len: 584 aa%3B no Hp match%3B~Updated (2006) note: Pfam domain x2 PF07719 Tetratricopeptide repeat identified within CDS. Functional classification - Unknown;gbkey=CDS;inference=protein motif:Pfam:PF07719;locus_tag=Cj1679;product=conserved hypothetical protein Cj1679;protein_id=CAL35774.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1600865	1600966	.	+	.	ID=id-Cj1679;Note=HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 2.8;gbkey=misc_feature;inference=protein motif:Pfam:PF07719;locus_tag=Cj1679
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1601294	1601395	.	+	.	ID=id-Cj1679-2;Note=HMMPfam hit to PF07719%2C Tetratricopeptide repeat%2Cscore 0.00092;gbkey=misc_feature;inference=protein motif:Pfam:PF07719;locus_tag=Cj1679
gi|15791399|ref|NC_002163.1|	EMBL	gene	1602332	1603099	.	-	.	ID=gene-Cj1680c;Name=Cj1680c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1680c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1602332	1603099	.	-	0	ID=cds-CAL35775.1;Parent=gene-Cj1680c;Dbxref=EnsemblGenomes-Gn:Cj1680c,EnsemblGenomes-Tr:CAL35775,UniProtKB/TrEMBL:Q0P7V0,NCBI_GP:CAL35775.1;Name=CAL35775.1;Note=Original (2000) note: Cj1680c%2C probable periplasmic protein%2C len: 255 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1680c;product=putative periplasmic protein;protein_id=CAL35775.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1603139	1603903	.	-	.	ID=gene-Cj1681c;Name=cysQ;gbkey=Gene;gene=cysQ;gene_biotype=protein_coding;locus_tag=Cj1681c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1603139	1603903	.	-	0	ID=cds-CAL35776.1;Parent=gene-Cj1681c;Dbxref=EnsemblGenomes-Gn:Cj1681c,EnsemblGenomes-Tr:CAL35776,GOA:Q0P7U9,InterPro:IPR000760,InterPro:IPR020583,UniProtKB/TrEMBL:Q0P7U9,NCBI_GP:CAL35776.1;Name=CAL35776.1;Note=Original (2000) note: Cj1681c%2C cysQ%2C probable cysQ protein homolog%2C len: 254 aa%3B similar to e.g. CYSQ_ECOLI CYSQ protein (246 aa)%2C fasta scores%3B opt: 421 z-score: 500.9 E(): 1.4e-20%2C 32.4%25 identity in 247 aa overlap. No Hp match. Contains Pfam match to entry PF00459 inositol_P%2CInositol monophosphatase family%2C and PS00629 Inositol monophosphatase family signature 1. Functional classification - Central intermediary metabolism - Sulphur metabolism%3B~PMID:1729235%2C PMID:7493934;gbkey=CDS;gene=cysQ;inference=protein motif:Prosite:PS00629;locus_tag=Cj1681c;product=CysQ protein homolog;protein_id=CAL35776.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1603148	1603897	.	-	.	ID=id-Cj1681c;Note=HMMPfam hit to PF00459%2C Inositol monophosphatase family%2C score 3.5e-29;gbkey=misc_feature;gene=cysQ;inference=protein motif:Pfam:PF00459;locus_tag=Cj1681c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1603622	1603663	.	-	.	ID=id-Cj1681c-2;Note=PS00629 Inositol monophosphatase family signature 1;gbkey=misc_feature;gene=cysQ;inference=protein motif:Prosite:PS00629;locus_tag=Cj1681c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1603983	1605251	.	-	.	ID=gene-Cj1682c;Name=gltA;gbkey=Gene;gene=gltA;gene_biotype=protein_coding;locus_tag=Cj1682c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1603983	1605251	.	-	0	ID=cds-CAL35777.1;Parent=gene-Cj1682c;Dbxref=EnsemblGenomes-Gn:Cj1682c,EnsemblGenomes-Tr:CAL35777,GOA:Q0P7U8,InterPro:IPR002020,InterPro:IPR010953,InterPro:IPR016141,InterPro:IPR016142,InterPro:IPR016143,InterPro:IPR019810,InterPro:IPR024176,UniProtKB/TrEMBL:Q0P7U8,NCBI_GP:CAL35777.1;Name=CAL35777.1;Note=Original (2000) note: Cj1682c%2C gltA%2C probable citrate synthase%2C len: 422 aa%3B similar to many e.g. CISY_PSEAE citrate synthase (EC 4.1.3.7) (428 aa)%2C fasta scores%3B opt: 1520 z-score: 1734.6 E(): 0%2C 53.8%25 identity in 405 aa overlap. 52.8%25 identity to HP0026. Contains PS00480 Citrate synthase signature%2C and Pfam match to entry PF00285 citrate_synt%2C Citrate synthase%3B~Updated (2006) note: Characterised within Pseudomonas aeruginosa with acceptable identity score. Appropriate motifs present. Putative not added to product function. EC number has been updated. Functional classification - Energy metabolism - Tricarboxylic acid cycle%3B~PMID:2507528;gbkey=CDS;gene=gltA;inference=protein motif:Prosite:PS00480;locus_tag=Cj1682c;product=citrate synthase;protein_id=CAL35777.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1604019	1605113	.	-	.	ID=id-Cj1682c;Note=HMMPfam hit to PF00285%2C Citrate synthase%2C score 2.2e-174;gbkey=misc_feature;gene=gltA;inference=protein motif:Pfam:PF00285;locus_tag=Cj1682c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1604304	1604342	.	-	.	ID=id-Cj1682c-2;Note=PS00480 Citrate synthase signature;gbkey=misc_feature;gene=gltA;inference=protein motif:Prosite:PS00480;locus_tag=Cj1682c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1605366	1606541	.	-	.	ID=gene-Cj1684c;Name=Cj1684c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1684c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1605366	1606541	.	-	0	ID=cds-CAL35778.1;Parent=gene-Cj1684c;Dbxref=EnsemblGenomes-Gn:Cj1684c,EnsemblGenomes-Tr:CAL35778,GOA:Q0P7U7,InterPro:IPR006153,UniProtKB/TrEMBL:Q0P7U7,NCBI_GP:CAL35778.1;Name=CAL35778.1;Note=Original (2000) note: Cj1684c%2C probable transmembrane transport protein%2C len: 391 aa%3B simlar to many predicted Na+/H+ antiporters%2C and to KEFB_ECOLI Glutathione-regulated potassium-efflux system protein (601 aa)%2C fasta scores%3B opt: 197 z-score: 237.9 E(): 6.2e-06%2C21.9%25 identity in 324 aa overlap%2C and NAPA_ENTHR Na(+)/H(+) antiporter (383 aa)%2C blastp scores%3B E%3D 3.1e-10%2C22%25 identity in 372 aa overlap. 35.9%25 identity to HP1183 (called NA+/H+ antiporter (napA) on basis of match to NAPA_ENTHR)%3B~Updated (2006) note: Eleven probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation yet with acceptable identity score. Putative kept within product function. Functional classification - Transport/binding proteins - Other;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;product=putative transmembrane transport protein;protein_id=CAL35778.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1605381	1605449	.	-	.	ID=id-Cj1684c;Note=11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27%2C 34-56%2C 61-83%2C 96-129%2C149-171%2C 184-206%2C 232-254%2C 275-292%2C 302-324%2C 333-355 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;part=1/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1605477	1605545	.	-	.	ID=id-Cj1684c;Note=11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27%2C 34-56%2C 61-83%2C 96-129%2C149-171%2C 184-206%2C 232-254%2C 275-292%2C 302-324%2C 333-355 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;part=2/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1605570	1605638	.	-	.	ID=id-Cj1684c;Note=11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27%2C 34-56%2C 61-83%2C 96-129%2C149-171%2C 184-206%2C 232-254%2C 275-292%2C 302-324%2C 333-355 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;part=3/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1605666	1605719	.	-	.	ID=id-Cj1684c;Note=11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27%2C 34-56%2C 61-83%2C 96-129%2C149-171%2C 184-206%2C 232-254%2C 275-292%2C 302-324%2C 333-355 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;part=4/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1605780	1605848	.	-	.	ID=id-Cj1684c;Note=11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27%2C 34-56%2C 61-83%2C 96-129%2C149-171%2C 184-206%2C 232-254%2C 275-292%2C 302-324%2C 333-355 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;part=5/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1605924	1605992	.	-	.	ID=id-Cj1684c;Note=11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27%2C 34-56%2C 61-83%2C 96-129%2C149-171%2C 184-206%2C 232-254%2C 275-292%2C 302-324%2C 333-355 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;part=6/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1606029	1606097	.	-	.	ID=id-Cj1684c;Note=11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27%2C 34-56%2C 61-83%2C 96-129%2C149-171%2C 184-206%2C 232-254%2C 275-292%2C 302-324%2C 333-355 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;part=7/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1606155	1606256	.	-	.	ID=id-Cj1684c;Note=11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27%2C 34-56%2C 61-83%2C 96-129%2C149-171%2C 184-206%2C 232-254%2C 275-292%2C 302-324%2C 333-355 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;part=8/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1606293	1606361	.	-	.	ID=id-Cj1684c;Note=11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27%2C 34-56%2C 61-83%2C 96-129%2C149-171%2C 184-206%2C 232-254%2C 275-292%2C 302-324%2C 333-355 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;part=9/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1606374	1606442	.	-	.	ID=id-Cj1684c;Note=11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27%2C 34-56%2C 61-83%2C 96-129%2C149-171%2C 184-206%2C 232-254%2C 275-292%2C 302-324%2C 333-355 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;part=10/11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1606461	1606514	.	-	.	ID=id-Cj1684c;Note=11 probable transmembrane helices predicted for Cj1684c by TMHMM2.0 at aa 10-27%2C 34-56%2C 61-83%2C 96-129%2C149-171%2C 184-206%2C 232-254%2C 275-292%2C 302-324%2C 333-355 and 365-387;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1684c;part=11/11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1606522	1607358	.	-	.	ID=gene-Cj1685c;Name=bioB;gbkey=Gene;gene=bioB;gene_biotype=protein_coding;locus_tag=Cj1685c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1606522	1607358	.	-	0	ID=cds-CAL35779.1;Parent=gene-Cj1685c;Dbxref=EnsemblGenomes-Gn:Cj1685c,EnsemblGenomes-Tr:CAL35779,GOA:Q0P7U6,InterPro:IPR002684,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR010722,InterPro:IPR013785,InterPro:IPR024177,NCBI_GP:CAL35779.1;Name=CAL35779.1;Note=Original (2000) note: Cj1685c%2C bioB%2C probable biotin synthase%2C len: 278 aa%3B similar to many e.g. BIOB_BACSU biotin synthase (EC 2.8.1.6) (335 aa)%2C fasta scores%3B opt: 554 z-score: 661.9 E(): 1.5e-29%2C 37.1%25 identity in 275 aa overlap. 53.2%25 identity to HP1406%3B~Updated (2006) note: Characterised within Bacillus subtilis with marginal identity score. Pfam motifs PF06968 Biotin and Thiamin Synthesis associated domain and PF04055 Radical SAM superfamily identified within CDS. Further support given to product function. Full sequence alignment was not acieved%2C so putative kept within product function. Functional classification - Biosynthesis of cofactors%2Cprosthetic groups and carriers - Biotin%3B~PMID:8763940%2C PMID:8173080%2C PMID:8917070;gbkey=CDS;gene=bioB;inference=protein motif:Pfam:PF06968;locus_tag=Cj1685c;product=putative biotin synthase;protein_id=CAL35779.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1606540	1606812	.	-	.	ID=id-Cj1685c;Note=HMMPfam hit to PF06968%2C Biotin and Thiamin Synthesis associated d%2C score 1e-25;gbkey=misc_feature;gene=bioB;inference=protein motif:Pfam:PF06968;locus_tag=Cj1685c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1606837	1607331	.	-	.	ID=id-Cj1685c-2;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 9.8e-20;gbkey=misc_feature;gene=bioB;inference=protein motif:Pfam:PF04055;locus_tag=Cj1685c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1607360	1609462	.	-	.	ID=gene-Cj1686c;Name=topA;gbkey=Gene;gene=topA;gene_biotype=protein_coding;locus_tag=Cj1686c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1607360	1609462	.	-	0	ID=cds-CAL35780.1;Parent=gene-Cj1686c;Dbxref=EnsemblGenomes-Gn:Cj1686c,EnsemblGenomes-Tr:CAL35780,GOA:Q9PLZ2,InterPro:IPR000380,InterPro:IPR003601,InterPro:IPR003602,InterPro:IPR005733,InterPro:IPR006171,InterPro:IPR013497,InterPro:IPR013498,InterPro:IPR013824,InterPro:IPR013825,InterPro:IPR023405,InterPro:IPR023406,InterPro:IPR028612,NCBI_GP:CAL35780.1;Name=CAL35780.1;Note=Original (2000) note: Cj1686c%2C topA%2C probable DNA topoisomerase I%2C len: 700 aa%3B similar to many e.g. TOP1_BACSU DNA topoisomerase I (EC 5.99.1.2) (691 aa)%2Cfasta scores%3B opt: 1941 z-score: 2081.2 E(): 0%2C 44.9%25 identity in 706 aa overlap. 55.0%25 identity to HP0116%2C and 30.7%25 identity to HP0440. Contains PS00396 Prokaryotic DNA topoisomerase I active site%2C and Pfam match to entry PF01131 Topoisom_bac%2C Prokayotic DNA topoisomerase%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Appropriate motifs present. Putative not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:15353591;gbkey=CDS;gene=topA;inference=protein motif:Prosite:PS00396;locus_tag=Cj1686c;product=DNA topoisomerase I;protein_id=CAL35780.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1607372	1607467	.	-	.	ID=id-Cj1686c;Note=HMMPfam hit to PF01396%2C Topoisomerase DNA binding C4 zinc fing%2C score 0.0034;gbkey=misc_feature;gene=topA;inference=protein motif:Pfam:PF01396;locus_tag=Cj1686c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1607468	1607587	.	-	.	ID=id-Cj1686c-2;Note=HMMPfam hit to PF01396%2C Topoisomerase DNA binding C4 zinc fing%2C score 8.7e-14;gbkey=misc_feature;gene=topA;inference=protein motif:Pfam:PF01396;locus_tag=Cj1686c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1607639	1607755	.	-	.	ID=id-Cj1686c-3;Note=HMMPfam hit to PF01396%2C Topoisomerase DNA binding C4 zinc fing%2C score 4e-17;gbkey=misc_feature;gene=topA;inference=protein motif:Pfam:PF01396;locus_tag=Cj1686c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1607870	1609087	.	-	.	ID=id-Cj1686c-4;Note=HMMPfam hit to PF01131%2C DNA topoisomerase%2C score 3.7e-168;gbkey=misc_feature;gene=topA;inference=protein motif:Pfam:PF01131;locus_tag=Cj1686c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1608557	1608625	.	-	.	ID=id-Cj1686c-5;Note=PS00396 Prokaryotic DNA topoisomerase I active site;gbkey=misc_feature;gene=topA;inference=protein motif:Prosite:PS00396;locus_tag=Cj1686c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1609127	1609456	.	-	.	ID=id-Cj1686c-6;Note=HMMPfam hit to PF01751%2C Toprim domain%2C score 4.5e-32;gbkey=misc_feature;gene=topA;inference=protein motif:Pfam:PF01751;locus_tag=Cj1686c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1609657	1610928	.	+	.	ID=gene-Cj1687;Name=Cj1687;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1687
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1609657	1610928	.	+	0	ID=cds-CAL35781.1;Parent=gene-Cj1687;Dbxref=EnsemblGenomes-Gn:Cj1687,EnsemblGenomes-Tr:CAL35781,GOA:Q0P7U4,InterPro:IPR011701,InterPro:IPR016196,InterPro:IPR020846,UniProtKB/TrEMBL:Q0P7U4,NCBI_GP:CAL35781.1;Name=CAL35781.1;Note=Original (2000) note: Cj1687%2C possible efflux protein%2C len: 423 aa%3B similar to members of the major facilitator family e.g. NORA_STAAU quinolone resistance NORA protein (388 aa)%2C fasta scores%3B opt: 333 z-score: 386.0 E(): 3.5e-14%2C 23.1%25 identity in 350 aa overlap%2C and BMR1_BACSU multidrug resistance protein 1 (389 aa)%2C fasta scores%3B opt: 282 z-score: 327.8 E(): 6.1e-11%2C 24.6%25 identity in 305 aa overlap. No Hp match. Contains Pfam match to entry PF00083 sugar_tr%2C Sugar (and other) transporters%3B~Updated (2006) note: Pfam domain PF07690 Major Facilitator Superfamily identified within CDS. Also%2Ctwelve probable transmembrane helices predicted by TMHMM2.0. Further support given to product function. No specific characterisation with acceptable identity score has been carried out yet. Literature search identified paper giving further clues to product function. Functional classification - Antibiotic resistance%3B~PMID:16048946;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1687;product=putative efflux protein;protein_id=CAL35781.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1609747	1609815	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=1/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1609894	1609962	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=2/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1609999	1610067	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=3/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1610077	1610136	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=4/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1610170	1610238	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=5/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1610251	1610319	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=6/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1610374	1610433	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=7/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1610491	1610559	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=8/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1610578	1610637	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=9/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1610650	1610718	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=10/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1610755	1610823	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=11/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1610851	1610904	.	+	.	ID=id-Cj1687;Note=12 probable transmembrane helices predicted for Cj1687 by TMHMM2.0 at aa 31-53%2C 80-102%2C 115-137%2C 141-160%2C172-194%2C 199-221%2C 240-259%2C 279-301%2C 308-327%2C 332-354%2C367-389 and 399-416;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;is_ordered=true;locus_tag=Cj1687;part=12/12;partial=true
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1609750	1610829	.	+	.	ID=id-Cj1687-2;Note=HMMPfam hit to PF07690%2C Major Facilitator Superfamily%2C score 2.5e-47;gbkey=misc_feature;inference=protein motif:Pfam:PF07690;locus_tag=Cj1687
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1610581	1610613	.	+	.	ID=id-Cj1687-3;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1687
gi|15791399|ref|NC_002163.1|	EMBL	gene	1610956	1612221	.	-	.	ID=gene-Cj1688c;Name=secY;gbkey=Gene;gene=secY;gene_biotype=protein_coding;locus_tag=Cj1688c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1610956	1612221	.	-	0	ID=cds-CAL35782.1;Parent=gene-Cj1688c;Dbxref=EnsemblGenomes-Gn:Cj1688c,EnsemblGenomes-Tr:CAL35782,GOA:Q0P7U3,InterPro:IPR002208,InterPro:IPR023201,InterPro:IPR026593,UniProtKB/TrEMBL:Q0P7U3,NCBI_GP:CAL35782.1;Name=CAL35782.1;Note=Original (2000) note: Cj1688c%2C secY%2C probable preprotein translocase subunit%2C len: 421 aa%3B similar to many e.gg. SECY_ECOLI preprotein translocase SECY subunit (443 aa)%2C fasta scores%3B opt: 1144 z-score: 1328.2 E(): 0%2C41.3%25 identity in 421 aa overlap. 71.1%25 identity to HP1300. Contains PS00756 Protein secY signature 2%2C and Pfam match to entry PF00344 secY%2C eubacterial secY protein%3B~Updated (2006) note: Ten probable transmembrane helices predicted by TMHMM2.0. Characterised within Escherichia coli and Vibrio cholerae with acceptable identity scores. Putative not added to product function. Functional classification - Protein and peptide secretion%3B~PMID:9322765%2C PMID:9738909%2C PMID:6389119;gbkey=CDS;gene=secY;inference=protein motif:TMHMM:2.0;locus_tag=Cj1688c;product=preprotein translocase subunit;protein_id=CAL35782.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611028	1611081	.	-	.	ID=id-Cj1688c;Note=10 probable transmembrane helices predicted for Cj1688c by TMHMM2.0 at aa 9-31%2C 61-83%2C 104-126%2C 141-163%2C170-191%2C 206-228%2C 257-279%2C 299-321%2C 357-376 and 381-398;gbkey=misc_feature;gene=secY;inference=protein motif:TMHMM:2.0;locus_tag=Cj1688c;part=1/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611094	1611153	.	-	.	ID=id-Cj1688c;Note=10 probable transmembrane helices predicted for Cj1688c by TMHMM2.0 at aa 9-31%2C 61-83%2C 104-126%2C 141-163%2C170-191%2C 206-228%2C 257-279%2C 299-321%2C 357-376 and 381-398;gbkey=misc_feature;gene=secY;inference=protein motif:TMHMM:2.0;locus_tag=Cj1688c;part=2/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611259	1611327	.	-	.	ID=id-Cj1688c;Note=10 probable transmembrane helices predicted for Cj1688c by TMHMM2.0 at aa 9-31%2C 61-83%2C 104-126%2C 141-163%2C170-191%2C 206-228%2C 257-279%2C 299-321%2C 357-376 and 381-398;gbkey=misc_feature;gene=secY;inference=protein motif:TMHMM:2.0;locus_tag=Cj1688c;part=3/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611385	1611453	.	-	.	ID=id-Cj1688c;Note=10 probable transmembrane helices predicted for Cj1688c by TMHMM2.0 at aa 9-31%2C 61-83%2C 104-126%2C 141-163%2C170-191%2C 206-228%2C 257-279%2C 299-321%2C 357-376 and 381-398;gbkey=misc_feature;gene=secY;inference=protein motif:TMHMM:2.0;locus_tag=Cj1688c;part=4/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611538	1611606	.	-	.	ID=id-Cj1688c;Note=10 probable transmembrane helices predicted for Cj1688c by TMHMM2.0 at aa 9-31%2C 61-83%2C 104-126%2C 141-163%2C170-191%2C 206-228%2C 257-279%2C 299-321%2C 357-376 and 381-398;gbkey=misc_feature;gene=secY;inference=protein motif:TMHMM:2.0;locus_tag=Cj1688c;part=5/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611649	1611714	.	-	.	ID=id-Cj1688c;Note=10 probable transmembrane helices predicted for Cj1688c by TMHMM2.0 at aa 9-31%2C 61-83%2C 104-126%2C 141-163%2C170-191%2C 206-228%2C 257-279%2C 299-321%2C 357-376 and 381-398;gbkey=misc_feature;gene=secY;inference=protein motif:TMHMM:2.0;locus_tag=Cj1688c;part=6/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611733	1611801	.	-	.	ID=id-Cj1688c;Note=10 probable transmembrane helices predicted for Cj1688c by TMHMM2.0 at aa 9-31%2C 61-83%2C 104-126%2C 141-163%2C170-191%2C 206-228%2C 257-279%2C 299-321%2C 357-376 and 381-398;gbkey=misc_feature;gene=secY;inference=protein motif:TMHMM:2.0;locus_tag=Cj1688c;part=7/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611844	1611912	.	-	.	ID=id-Cj1688c;Note=10 probable transmembrane helices predicted for Cj1688c by TMHMM2.0 at aa 9-31%2C 61-83%2C 104-126%2C 141-163%2C170-191%2C 206-228%2C 257-279%2C 299-321%2C 357-376 and 381-398;gbkey=misc_feature;gene=secY;inference=protein motif:TMHMM:2.0;locus_tag=Cj1688c;part=8/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611973	1612041	.	-	.	ID=id-Cj1688c;Note=10 probable transmembrane helices predicted for Cj1688c by TMHMM2.0 at aa 9-31%2C 61-83%2C 104-126%2C 141-163%2C170-191%2C 206-228%2C 257-279%2C 299-321%2C 357-376 and 381-398;gbkey=misc_feature;gene=secY;inference=protein motif:TMHMM:2.0;locus_tag=Cj1688c;part=9/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1612129	1612197	.	-	.	ID=id-Cj1688c;Note=10 probable transmembrane helices predicted for Cj1688c by TMHMM2.0 at aa 9-31%2C 61-83%2C 104-126%2C 141-163%2C170-191%2C 206-228%2C 257-279%2C 299-321%2C 357-376 and 381-398;gbkey=misc_feature;gene=secY;inference=protein motif:TMHMM:2.0;locus_tag=Cj1688c;part=10/10
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611013	1612038	.	-	.	ID=id-Cj1688c-2;Note=HMMPfam hit to PF00344%2C eubacterial secY protein%2Cscore 5.2e-113;gbkey=misc_feature;gene=secY;inference=protein motif:Pfam:PF00344;locus_tag=Cj1688c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611661	1611717	.	-	.	ID=id-Cj1688c-3;Note=PS00095 C-5 cytosine-specific DNA methylases C-terminal signature;gbkey=misc_feature;gene=secY;inference=protein motif:Prosite:PS00095;locus_tag=Cj1688c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1611685	1611741	.	-	.	ID=id-Cj1688c-4;Note=PS00756 Protein secY signature 2;gbkey=misc_feature;gene=secY;inference=protein motif:Prosite:PS00756;locus_tag=Cj1688c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1612221	1612613	.	-	.	ID=gene-Cj1689c;Name=rp10;gbkey=Gene;gene=rp10;gene_biotype=protein_coding;locus_tag=Cj1689c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1612221	1612613	.	-	0	ID=cds-CAL35783.1;Parent=gene-Cj1689c;Dbxref=EnsemblGenomes-Gn:Cj1689c,EnsemblGenomes-Tr:CAL35783,GOA:Q0P7U2,InterPro:IPR005749,InterPro:IPR021131,UniProtKB/TrEMBL:Q0P7U2,NCBI_GP:CAL35783.1;Name=CAL35783.1;Note=Original (2000) note: Cj1689c%2C rplO%2C 50S ribosomal protein L15%2C len: 130 aa%3B similar to many e.g. RL15_BACSU 50S ribosomal protein L15 (146 aa)%2C fasta scores%3B opt: 300 z-score: 338.5 E(): 1.6e-11%2C 41.1%25 identity in 129 aa overlap. 63.6%25 identity to HP1301. Contains Pfam match to entry PF01305 Ribosomal_L15%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:8635744%2C PMID:2508062%2C PMID:6389119;gbkey=CDS;gene=rp10;inference=protein motif:Pfam:PF01305;locus_tag=Cj1689c;product=50S ribosomal protein L15;protein_id=CAL35783.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1612320	1612610	.	-	.	ID=id-Cj1689c;Note=HMMPfam hit to PF01305%2C Ribosomal protein L15 amino terminal re%2C score 1.5e-41;gbkey=misc_feature;gene=rp10;inference=protein motif:Pfam:PF01305;locus_tag=Cj1689c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1612618	1613061	.	-	.	ID=gene-Cj1690c;Name=rpsE;gbkey=Gene;gene=rpsE;gene_biotype=protein_coding;locus_tag=Cj1690c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1612618	1613061	.	-	0	ID=cds-CAL35784.1;Parent=gene-Cj1690c;Dbxref=EnsemblGenomes-Gn:Cj1690c,EnsemblGenomes-Tr:CAL35784,GOA:Q9PLY8,InterPro:IPR000851,InterPro:IPR005324,InterPro:IPR005712,InterPro:IPR013810,InterPro:IPR014720,InterPro:IPR014721,InterPro:IPR018192,InterPro:IPR020568,NCBI_GP:CAL35784.1;Name=CAL35784.1;Note=Original (2000) note: Cj1690c%2C rpsE%2C 30S ribosomal protein S5%2C len: 147 aa%3B similar to many e.g. RS5_BACSU 30S ribosomal protein S5 (166 aa)%2C fasta scores%3B opt: 564 z-score: 665.5 E(): 9.6e-30%2C 60.6%25 identity in 142 aa overlap. 81.5%25 identity to HP1302. Contains PS00585 Ribosomal protein S5 signature%2C and Pfam match to entry PF00333 S5%2C Ribosomal protein S5%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:8635744%2C PMID:11489846%2C PMID:2508062%2CPMID:3089329;gbkey=CDS;gene=rpsE;inference=protein motif:Prosite:PS00585;locus_tag=Cj1690c;product=30S ribosomal protein S5;protein_id=CAL35784.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1612621	1612815	.	-	.	ID=id-Cj1690c;Note=HMMPfam hit to PF03719%2C Ribosomal protein S5%2CC-terminal domai%2C score 1.8e-23;gbkey=misc_feature;gene=rpsE;inference=protein motif:Pfam:PF03719;locus_tag=Cj1690c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1612840	1613040	.	-	.	ID=id-Cj1690c-2;Note=HMMPfam hit to PF00333%2C Ribosomal protein S5%2CN-terminal domai%2C score 6.4e-34;gbkey=misc_feature;gene=rpsE;inference=protein motif:Pfam:PF00333;locus_tag=Cj1690c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1612888	1612986	.	-	.	ID=id-Cj1690c-3;Note=PS00585 Ribosomal protein S5 signature;gbkey=misc_feature;gene=rpsE;inference=protein motif:Prosite:PS00585;locus_tag=Cj1690c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1613073	1613429	.	-	.	ID=gene-Cj1691c;Name=rplR;gbkey=Gene;gene=rplR;gene_biotype=protein_coding;locus_tag=Cj1691c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1613073	1613429	.	-	0	ID=cds-CAL35785.1;Parent=gene-Cj1691c;Dbxref=EnsemblGenomes-Gn:Cj1691c,EnsemblGenomes-Tr:CAL35785,GOA:Q9PLY7,InterPro:IPR004389,InterPro:IPR005484,NCBI_GP:CAL35785.1;Name=CAL35785.1;Note=Original (2000) note: Cj1691c%2C rplR%2C 50S ribosomal protein L18%2C len: 118 aa%3B similar to many e.g. RL18_BACSU 50S ribosomal protein L18 (120 aa)%2C fasta scores%3B opt: 290 z-score: 372.8 E(): 1.9e-13%2C 43.6%25 identity in 110 aa overlap. 58.5%25 identity to HP1303%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:8635744%2C PMID:2508062%2C PMID:1062549;gbkey=CDS;gene=rplR;locus_tag=Cj1691c;product=50S ribosomal protein L18;protein_id=CAL35785.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1613076	1613408	.	-	.	ID=id-Cj1691c;Note=HMMPfam hit to PF00861%2C Ribosomal L18p/L5e family%2Cscore 8.6e-27;gbkey=misc_feature;gene=rplR;inference=protein motif:Pfam:PF00861;locus_tag=Cj1691c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1613439	1613975	.	-	.	ID=gene-Cj1692c;Name=rplF;gbkey=Gene;gene=rplF;gene_biotype=protein_coding;locus_tag=Cj1692c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1613439	1613975	.	-	0	ID=cds-CAL35786.1;Parent=gene-Cj1692c;Dbxref=EnsemblGenomes-Gn:Cj1692c,EnsemblGenomes-Tr:CAL35786,GOA:Q0P7T9,InterPro:IPR000702,InterPro:IPR002358,InterPro:IPR019906,InterPro:IPR020040,NCBI_GP:CAL35786.1;Name=CAL35786.1;Note=Original (2000) note: Cj1692c%2C rplF%2C 50S ribosomal protein L6%2C len: 178 aa%3B similar to many e.g. RL6_ECOLI 50S ribosomal protein L6 (176 aa)%2C fasta scores%3B opt: 541 z-score: 655.4 E(): 3.5e-29%2C 48.3%25 identity in 176 aa overlap. 67.4%25 identity to HP1304. Contains PS00525 Ribosomal protein L6 signature 1%2C and Pfam match to entry PF00347 L6%2C Ribosomal protein L6%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:8635744%2C PMID:2508062;gbkey=CDS;gene=rplF;inference=protein motif:Prosite:PS00525;locus_tag=Cj1692c;product=50S ribosomal protein L6;protein_id=CAL35786.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1613484	1613708	.	-	.	ID=id-Cj1692c;Note=HMMPfam hit to PF00347%2C Ribosomal protein L6%2C score 2.6e-30;gbkey=misc_feature;gene=rplF;inference=protein motif:Pfam:PF00347;locus_tag=Cj1692c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1613493	1613519	.	-	.	ID=id-Cj1692c-2;Note=PS00525 Ribosomal protein L6 signature 1;gbkey=misc_feature;gene=rplF;inference=protein motif:Prosite:PS00525;locus_tag=Cj1692c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1613730	1613945	.	-	.	ID=id-Cj1692c-3;Note=HMMPfam hit to PF00347%2C Ribosomal protein L6%2C score 3e-07;gbkey=misc_feature;gene=rplF;inference=protein motif:Pfam:PF00347;locus_tag=Cj1692c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1614054	1614449	.	-	.	ID=gene-Cj1693c;Name=rpsH;gbkey=Gene;gene=rpsH;gene_biotype=protein_coding;locus_tag=Cj1693c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1614054	1614449	.	-	0	ID=cds-CAL35787.1;Parent=gene-Cj1693c;Dbxref=EnsemblGenomes-Gn:Cj1693c,EnsemblGenomes-Tr:CAL35787,GOA:Q9PLY5,InterPro:IPR000630,NCBI_GP:CAL35787.1;Name=CAL35787.1;Note=Original (2000) note: Cj1693c%2C rpsH%2C 30S ribosomal protein S8%2C len: 131 aa%3B similar to many e.g. RS8_BACSU 30S ribosomal protein S8 (131 aa)%2C fasta scores%3B opt: 344 z-score: 432.0 E(): 9.7e-17%2C 42.0%25 identity in 131 aa overlap. 63.4%25 identity to HP1305. Contains PS00053 Ribosomal protein S8 signature%2C and Pfam match to entry PF00410 S8%2C Ribosomal protein S8%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:8635744%2C PMID:6806564%2C PMID:2508062%2CPMID:1735715;gbkey=CDS;gene=rpsH;inference=protein motif:Prosite:PS00053;locus_tag=Cj1693c;product=30S ribosomal protein S8;protein_id=CAL35787.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1614057	1614440	.	-	.	ID=id-Cj1693c;Note=HMMPfam hit to PF00410%2C Ribosomal protein S8%2C score 2.7e-52;gbkey=misc_feature;gene=rpsH;inference=protein motif:Pfam:PF00410;locus_tag=Cj1693c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1614057	1614068	.	-	.	ID=id-Cj1693c-2;Note=PS00294 Prenyl group binding site (CAAX box);gbkey=misc_feature;gene=rpsH;inference=protein motif:Prosite:PS00294;locus_tag=Cj1693c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1614096	1614149	.	-	.	ID=id-Cj1693c-3;Note=PS00053 Ribosomal protein S8 signature;gbkey=misc_feature;gene=rpsH;inference=protein motif:Prosite:PS00053;locus_tag=Cj1693c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1614459	1614644	.	-	.	ID=gene-Cj1694c;Name=rpsN;gbkey=Gene;gene=rpsN;gene_biotype=protein_coding;locus_tag=Cj1694c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1614459	1614644	.	-	0	ID=cds-CAL35788.1;Parent=gene-Cj1694c;Dbxref=EnsemblGenomes-Gn:Cj1694c,EnsemblGenomes-Tr:CAL35788,GOA:Q9PLY4,InterPro:IPR001209,InterPro:IPR018271,InterPro:IPR023053,NCBI_GP:CAL35788.1;Name=CAL35788.1;Note=Original (2000) note: Cj1694c%2C rpsN%2C 30S ribosomal protein S14%2C len: 61 aa%3B similar to many e.g. RS14_BACSU 30S ribosomal protein S14 (60 aa)%2C fasta scores%3B opt: 301 z-score: 445.6 E(): 1.7e-17%2C 66.7%25 identity in 60 aa overlap. 90.2%25 identity to HP1306. Contains PS00527 Ribosomal protein S14 signature%2C and Pfam match to entry PF00253 S14%2C Ribosomal protein S14%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:8635744%2C PMID:6806564%2C PMID:2508062;gbkey=CDS;gene=rpsN;inference=protein motif:Prosite:PS00527;locus_tag=Cj1694c;product=30S ribosomal protein S14;protein_id=CAL35788.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1614465	1614629	.	-	.	ID=id-Cj1694c;Note=HMMPfam hit to PF00253%2C Ribosomal protein S14p/S29e%2C score 6.5e-20;gbkey=misc_feature;gene=rpsN;inference=protein motif:Pfam:PF00253;locus_tag=Cj1694c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1614510	1614578	.	-	.	ID=id-Cj1694c-2;Note=PS00527 Ribosomal protein S14 signature;gbkey=misc_feature;gene=rpsN;inference=protein motif:Prosite:PS00527;locus_tag=Cj1694c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1614646	1615191	.	-	.	ID=gene-Cj1695c;Name=rplE;gbkey=Gene;gene=rplE;gene_biotype=protein_coding;locus_tag=Cj1695c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1614646	1615191	.	-	0	ID=cds-CAL35789.1;Parent=gene-Cj1695c;Dbxref=EnsemblGenomes-Gn:Cj1695c,EnsemblGenomes-Tr:CAL35789,GOA:Q9PLY3,InterPro:IPR002132,InterPro:IPR020929,InterPro:IPR020930,InterPro:IPR022803,NCBI_GP:CAL35789.1;Name=CAL35789.1;Note=Original (2000) note: Cj1695c%2C rplE%2C 50S ribosomal protein L5%2C len: 181 aa%3B similar to many e.g. RL5_BACSU 50S ribosomal protein L5 (179 aa)%2C fasta scores%3B opt: 706 z-score: 862.2 E(): 0%2C 54.7%25 identity in 179 aa overlap. 67.0%25 identity to HP1307. Contains PS00358 Ribosomal protein L5 signature%2C Pfam match to entry PF00281 L5%2CRibosomal protein L5%2C and Pfam match to entry PF00673 L5_C%2C ribosomal L5P family C-terminus%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:8635744%2C PMID:2508062;gbkey=CDS;gene=rplE;inference=protein motif:Prosite:PS00358;locus_tag=Cj1695c;product=50S ribosomal protein L5;protein_id=CAL35789.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1614658	1614942	.	-	.	ID=id-Cj1695c;Note=HMMPfam hit to PF00673%2C ribosomal L5P family C-terminus%2C score 6e-47;gbkey=misc_feature;gene=rplE;inference=protein motif:Pfam:PF00673;locus_tag=Cj1695c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1614952	1615122	.	-	.	ID=id-Cj1695c-2;Note=HMMPfam hit to PF00281%2C Ribosomal protein L5%2C score 2.1e-21;gbkey=misc_feature;gene=rplE;inference=protein motif:Pfam:PF00281;locus_tag=Cj1695c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1614973	1615023	.	-	.	ID=id-Cj1695c-3;Note=PS00358 Ribosomal protein L5 signature;gbkey=misc_feature;gene=rplE;inference=protein motif:Prosite:PS00358;locus_tag=Cj1695c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1615195	1615428	.	-	.	ID=gene-Cj1696c;Name=rplX;gbkey=Gene;gene=rplX;gene_biotype=protein_coding;locus_tag=Cj1696c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1615195	1615428	.	-	0	ID=cds-CAL35790.1;Parent=gene-Cj1696c;Dbxref=EnsemblGenomes-Gn:Cj1696c,EnsemblGenomes-Tr:CAL35790,GOA:Q9PLY2,InterPro:IPR003256,InterPro:IPR005824,InterPro:IPR005825,InterPro:IPR008991,InterPro:IPR014722,NCBI_GP:CAL35790.1;Name=CAL35790.1;Note=Original (2000) note: Cj1696c%2C rplX%2C 50S ribosomal protein L24%2C len: 77 aa%3B similar to many e.g. RL24_BACSU 50S ribosomal protein L24 (103 aa)%2C fasta scores%3B opt: 251 z-score: 337.6 E(): 1.8e-11%2C 51.5%25 identity in 68 aa overlap. 70.8%25 identity to HP1308. Contains PS01108 Ribosomal protein L24 signature%2C and Pfam match to entry PF00467 L24%2C Ribosomal protein L24%3B~Updated (2006) note: Characterised within Bacillus subtilis with acceptable identity score. Putative not added to product function. Functional classification -Ribosomal protein synthesis and modification%3B~PMID:8635744%2C PMID:2508062%2C PMID:1556555%2CPMID:11278078;gbkey=CDS;gene=rplX;inference=protein motif:Prosite:PS01108;locus_tag=Cj1696c;product=50S ribosomal protein L24;protein_id=CAL35790.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1615309	1615410	.	-	.	ID=id-Cj1696c;Note=HMMPfam hit to PF00467%2C KOW motif%2C score 9.3e-11;gbkey=misc_feature;gene=rplX;inference=protein motif:Pfam:PF00467;locus_tag=Cj1696c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1615348	1615401	.	-	.	ID=id-Cj1696c-2;Note=PS01108 Ribosomal protein L24 signature;gbkey=misc_feature;gene=rplX;inference=protein motif:Prosite:PS01108;locus_tag=Cj1696c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1615428	1615796	.	-	.	ID=gene-Cj1697c;Name=rplN;gbkey=Gene;gene=rplN;gene_biotype=protein_coding;locus_tag=Cj1697c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1615428	1615796	.	-	0	ID=cds-CAL35791.1;Parent=gene-Cj1697c;Dbxref=EnsemblGenomes-Gn:Cj1697c,EnsemblGenomes-Tr:CAL35791,GOA:Q0P7T4,InterPro:IPR000218,InterPro:IPR005745,InterPro:IPR019972,InterPro:IPR023571,NCBI_GP:CAL35791.1;Name=CAL35791.1;Note=Original (2000) note: Cj1697c%2C rplN%2C 50S ribosomal protein L14%2C len: 122 aa%3B similar to many e.g. RL14_ECOLI 50S ribosomal protein L14 (123 aa)%2C fasta scores%3B opt: 531 z-score: 674.1 E(): 3.2e-30%2C 68.3%25 identity in 123 aa overlap. 82.0%25 identity to HP1309. Contains PS00049 Ribosomal protein L14 signature%2C and Pfam match to entry PF00238 L14%2C Ribosomal protein L14%3B~Updated (2006) note: Characterised within Escherichia coli and Bacillus subtilis with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:8635744%2C PMID:2508062%2C PMID:10329160;gbkey=CDS;gene=rplN;inference=protein motif:Prosite:PS00049;locus_tag=Cj1697c;product=50S ribosomal protein L14;protein_id=CAL35791.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1615431	1615796	.	-	.	ID=id-Cj1697c;Note=HMMPfam hit to PF00238%2C Ribosomal protein L14p/L23e%2C score 3.4e-77;gbkey=misc_feature;gene=rplN;inference=protein motif:Pfam:PF00238;locus_tag=Cj1697c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1615539	1615619	.	-	.	ID=id-Cj1697c-2;Note=PS00049 Ribosomal protein L14 signature;gbkey=misc_feature;gene=rplN;inference=protein motif:Prosite:PS00049;locus_tag=Cj1697c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1615796	1616047	.	-	.	ID=gene-Cj1698c;Name=rpsQ;gbkey=Gene;gene=rpsQ;gene_biotype=protein_coding;locus_tag=Cj1698c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1615796	1616047	.	-	0	ID=cds-CAL35792.1;Parent=gene-Cj1698c;Dbxref=EnsemblGenomes-Gn:Cj1698c,EnsemblGenomes-Tr:CAL35792,GOA:Q9PLY0,InterPro:IPR000266,InterPro:IPR012340,InterPro:IPR019979,InterPro:IPR019984,NCBI_GP:CAL35792.1;Name=CAL35792.1;Note=Original (2000) note: Cj1698c%2C rpsQ%2C 30S ribosomal protein S17%2C len: 83 aa%3B similar to many e.g. RS17_ECOLI 30S ribosomal protein S17 (83 aa)%2C fasta scores%3B opt: 221 z-score: 326.8 E(): 7e-11%2C 48.7%25 identity in 78 aa overlap. 67.1%25 identity to HP1310. Contains PS00056 Ribosomal protein S17 signature%2C and Pfam match to entry PF00366 S17%2C Ribosomal protein S17%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:3892488%2C PMID:6806564%2C PMID:108517;gbkey=CDS;gene=rpsQ;inference=protein motif:Prosite:PS00056;locus_tag=Cj1698c;product=30S ribosomal protein S17;protein_id=CAL35792.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1615817	1616023	.	-	.	ID=id-Cj1698c;Note=HMMPfam hit to PF00366%2C Ribosomal protein S17%2Cscore 1.1e-23;gbkey=misc_feature;gene=rpsQ;inference=protein motif:Pfam:PF00366;locus_tag=Cj1698c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1615847	1615885	.	-	.	ID=id-Cj1698c-2;Note=PS00056 Ribosomal protein S17 signature;gbkey=misc_feature;gene=rpsQ;inference=protein motif:Prosite:PS00056;locus_tag=Cj1698c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1616057	1616242	.	-	.	ID=gene-Cj1699c;Name=rpmC;gbkey=Gene;gene=rpmC;gene_biotype=protein_coding;locus_tag=Cj1699c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1616057	1616242	.	-	0	ID=cds-CAL35793.1;Parent=gene-Cj1699c;Dbxref=EnsemblGenomes-Gn:Cj1699c,EnsemblGenomes-Tr:CAL35793,GOA:Q9PLX9,InterPro:IPR001854,InterPro:IPR018254,NCBI_GP:CAL35793.1;Name=CAL35793.1;Note=Original (2000) note: Cj1699c%2C rpmC%2C 50S ribosomal protein L29%2C len: 61 aa%3B similar to many e.g. RL29_BACSU 50S ribosomal protein L29 (66 aa)%2C fasta scores%3B opt: 135 z-score: 205.5 E(): 0.0004%2C 45.6%25 identity in 57 aa overlap. 61.0%25 identity to HP1311. Contains PS00579 Ribosomal protein L29 signature%2C and Pfam match to entry PF00831 Ribosomal_L29%2C Ribosomal L29 protein%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:3892488;gbkey=CDS;gene=rpmC;inference=protein motif:Prosite:PS00579;locus_tag=Cj1699c;product=50S ribosomal protein L29;protein_id=CAL35793.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1616063	1616236	.	-	.	ID=id-Cj1699c;Note=HMMPfam hit to PF00831%2C Ribosomal L29 protein%2Cscore 1.5e-19;gbkey=misc_feature;gene=rpmC;inference=protein motif:Pfam:PF00831;locus_tag=Cj1699c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1616084	1616128	.	-	.	ID=id-Cj1699c-2;Note=PS00579 Ribosomal protein L29 signature;gbkey=misc_feature;gene=rpmC;inference=protein motif:Prosite:PS00579;locus_tag=Cj1699c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1616229	1616654	.	-	.	ID=gene-Cj1700c;Name=rplP;gbkey=Gene;gene=rplP;gene_biotype=protein_coding;locus_tag=Cj1700c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1616229	1616654	.	-	0	ID=cds-CAL35794.1;Parent=gene-Cj1700c;Dbxref=EnsemblGenomes-Gn:Cj1700c,EnsemblGenomes-Tr:CAL35794,GOA:Q9PLX8,InterPro:IPR000114,InterPro:IPR016180,InterPro:IPR020798,NCBI_GP:CAL35794.1;Name=CAL35794.1;Note=Original (2000) note: Cj1700c%2C rplP%2C 50S ribosomal protein L16%2C len: 141 aa%3B similar to many e.g. RL16_ECOLI 50S ribosomal protein L16 (136 aa)%2C fasta scores%3B opt: 603 z-score: 778.3 E(): 0%2C 67.9%25 identity in 134 aa overlap. 75.2%25 identity to HP1312. Contains PS00701 Ribosomal protein L16 signature 2%2C and Pfam match to entry PF00252 L16%2C Ribosomal protein L16%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:3892488%2C PMID:9371452%2C PMID:11120948;gbkey=CDS;gene=rplP;inference=protein motif:Prosite:PS00701;locus_tag=Cj1700c;product=50S ribosomal protein L16;protein_id=CAL35794.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1616259	1616654	.	-	.	ID=id-Cj1700c;Note=HMMPfam hit to PF00252%2C Ribosomal protein L16%2Cscore 2.7e-82;gbkey=misc_feature;gene=rplP;inference=protein motif:Pfam:PF00252;locus_tag=Cj1700c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1616376	1616411	.	-	.	ID=id-Cj1700c-2;Note=PS00701 Ribosomal protein L16 signature 2;gbkey=misc_feature;gene=rplP;inference=protein motif:Prosite:PS00701;locus_tag=Cj1700c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1616657	1617358	.	-	.	ID=gene-Cj1701c;Name=rpsC;gbkey=Gene;gene=rpsC;gene_biotype=protein_coding;locus_tag=Cj1701c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1616657	1617358	.	-	0	ID=cds-CAL35795.1;Parent=gene-Cj1701c;Dbxref=EnsemblGenomes-Gn:Cj1701c,EnsemblGenomes-Tr:CAL35795,GOA:Q9PLX7,InterPro:IPR001351,InterPro:IPR004044,InterPro:IPR004087,InterPro:IPR004088,InterPro:IPR005704,InterPro:IPR009019,InterPro:IPR015946,InterPro:IPR018280,NCBI_GP:CAL35795.1;Name=CAL35795.1;Note=Original (2000) note: Cj1701c%2C rpsC%2C 30S ribosomal protein S3%2C len: 233 aa%3B similar to many e.g. RS3_ECOLI 30S ribosomal protein S3 (232 aa)%2C fasta scores%3B opt: 873 z-score: 1018.0 E(): 0%2C 56.5%25 identity in 237 aa overlap. 72.5%25 identity to HP1313. Contains PS00548 Ribosomal protein S3 signature%2C Pfam match to entry PF00189 S3_C%2CRibosomal protein S3%2C C-terminal domain%2C Pfam match to entry PF00013 KH-domain%2C KH domain family of RNA binding proteins%2C and Pfam match to entry PF00417 S3_N%2C Ribosomal protein S3%2C N-terminal domain%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:3892488%2C PMID:9371452;gbkey=CDS;gene=rpsC;inference=protein motif:Prosite:PS00548;locus_tag=Cj1701c;product=30S ribosomal protein S3;protein_id=CAL35795.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1616753	1617004	.	-	.	ID=id-Cj1701c;Note=HMMPfam hit to PF00189%2C Ribosomal protein S3%2CC-terminal domai%2C score 2.8e-49;gbkey=misc_feature;gene=rpsC;inference=protein motif:Pfam:PF00189;locus_tag=Cj1701c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1616768	1616872	.	-	.	ID=id-Cj1701c-2;Note=PS00548 Ribosomal protein S3 signature;gbkey=misc_feature;gene=rpsC;inference=protein motif:Prosite:PS00548;locus_tag=Cj1701c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1617008	1617172	.	-	.	ID=id-Cj1701c-3;Note=HMMPfam hit to PF07650%2C KH domain%2C score 1.4e-17;gbkey=misc_feature;gene=rpsC;inference=protein motif:Pfam:PF07650;locus_tag=Cj1701c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1617173	1617358	.	-	.	ID=id-Cj1701c-4;Note=HMMPfam hit to PF00417%2C Ribosomal protein S3%2CN-terminal domai%2C score 1.9e-24;gbkey=misc_feature;gene=rpsC;inference=protein motif:Pfam:PF00417;locus_tag=Cj1701c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1617358	1617783	.	-	.	ID=gene-Cj1702c;Name=rplV;gbkey=Gene;gene=rplV;gene_biotype=protein_coding;locus_tag=Cj1702c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1617358	1617783	.	-	0	ID=cds-CAL35796.1;Parent=gene-Cj1702c;Dbxref=EnsemblGenomes-Gn:Cj1702c,EnsemblGenomes-Tr:CAL35796,GOA:Q9PLX6,InterPro:IPR001063,InterPro:IPR005727,InterPro:IPR018260,NCBI_GP:CAL35796.1;Name=CAL35796.1;Note=Original (2000) note: Cj1702c%2C rplV%2C 50S ribosomal protein L22%2C len: 141 aa%3B similar to many e.g. RL22_BACSU 50S ribosomal protein L22(113 aa)%2C fasta scores%3B opt: 230 z-score: 293.0 E(): 5.3e-09%2C 37.4%25 identity in 107 aa overlap. 60.0%25 identity to HP1314. Contains PS00464 Ribosomal protein L22 signature%2C and Pfam match to entry PF00237 L22%2C Ribosomal protein L22%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:3892488%2C PMID:9371452;gbkey=CDS;gene=rplV;inference=protein motif:Prosite:PS00464;locus_tag=Cj1702c;product=50S ribosomal protein L22;protein_id=CAL35796.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1617472	1617774	.	-	.	ID=id-Cj1702c;Note=HMMPfam hit to PF00237%2C Ribosomal protein L22p/L17e%2C score 3.7e-29;gbkey=misc_feature;gene=rplV;inference=protein motif:Pfam:PF00237;locus_tag=Cj1702c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1617478	1617552	.	-	.	ID=id-Cj1702c-2;Note=PS00464 Ribosomal protein L22 signature;gbkey=misc_feature;gene=rplV;inference=protein motif:Prosite:PS00464;locus_tag=Cj1702c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1617794	1618075	.	-	.	ID=gene-Cj1703c;Name=rpsS;gbkey=Gene;gene=rpsS;gene_biotype=protein_coding;locus_tag=Cj1703c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1617794	1618075	.	-	0	ID=cds-CAL35797.1;Parent=gene-Cj1703c;Dbxref=EnsemblGenomes-Gn:Cj1703c,EnsemblGenomes-Tr:CAL35797,GOA:Q9PLX5,InterPro:IPR002222,InterPro:IPR005732,InterPro:IPR020934,InterPro:IPR023575,NCBI_GP:CAL35797.1;Name=CAL35797.1;Note=Original (2000) note: Cj1703c%2C rpsS%2C 30S ribosomal protein S19%2C len: 93 aa%3B similar to many e.g. RS19_ECOLI 30S ribosomal protein S19 (91 aa)%2C fasta scores%3B opt: 387 z-score: 538.6 E(): 1.1e-22%2C 59.1%25 identity in 88 aa overlap. 80.6%25 identity to HP1315. Contains PS00323 Ribosomal protein S19 signature%2C and Pfam match to entry PF00203 S19%2C Ribosomal protein S19%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:3892488%2C PMID:9371452;gbkey=CDS;gene=rpsS;inference=protein motif:Prosite:PS00323;locus_tag=Cj1703c;product=30S ribosomal protein S19;protein_id=CAL35797.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1617827	1618069	.	-	.	ID=id-Cj1703c;Note=HMMPfam hit to PF00203%2C Ribosomal protein S19%2Cscore 1.7e-43;gbkey=misc_feature;gene=rpsS;inference=protein motif:Pfam:PF00203;locus_tag=Cj1703c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1617845	1617919	.	-	.	ID=id-Cj1703c-2;Note=PS00323 Ribosomal protein S19 signature;gbkey=misc_feature;gene=rpsS;inference=protein motif:Prosite:PS00323;locus_tag=Cj1703c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1618077	1618907	.	-	.	ID=gene-Cj1704c;Name=rplB;gbkey=Gene;gene=rplB;gene_biotype=protein_coding;locus_tag=Cj1704c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1618077	1618907	.	-	0	ID=cds-CAL35798.1;Parent=gene-Cj1704c;Dbxref=EnsemblGenomes-Gn:Cj1704c,EnsemblGenomes-Tr:CAL35798,GOA:Q9PLX4,InterPro:IPR002171,InterPro:IPR005880,InterPro:IPR008991,InterPro:IPR012340,InterPro:IPR014722,InterPro:IPR014726,InterPro:IPR022666,InterPro:IPR022669,InterPro:IPR022671,NCBI_GP:CAL35798.1;Name=CAL35798.1;Note=Original (2000) note: Cj1704c%2C rplB%2C 50S ribosomal protein L2%2C len: 276 aa%3B similar to many e.g. RL2_BACSU 50S ribosomal protein L2 (BL2) (276 aa)%2C fasta scores%3B opt: 1047 z-score: 1196.7 E(): 0%2C 57.6%25 identity in 278 aa overlap. 74.6%25 identity to HP1316. Contains rplB%2C 50S ribosomal protein L2%2C len: 276 aa%3B similar to many e.g. RL2_BACSU 50S ribosomal protein L2 (BL2) (276 aa)%2C fasta scores%2C and Pfam match to entry PF00181 L2%2C Ribosomal Proteins L2%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:3892488%2C PMID:9371452%2C PMID:2211695;gbkey=CDS;gene=rplB;inference=protein motif:Pfam:PF00181;locus_tag=Cj1704c;product=50S ribosomal protein L2;protein_id=CAL35798.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1618149	1618535	.	-	.	ID=id-Cj1704c;Note=HMMPfam hit to PF03947%2C Ribosomal Proteins L2%2CC-terminal doma%2C score 1.7e-85;gbkey=misc_feature;gene=rplB;inference=protein motif:Pfam:PF03947;locus_tag=Cj1704c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1618218	1618253	.	-	.	ID=id-Cj1704c-2;Note=PS00467 Ribosomal protein L2 signature;gbkey=misc_feature;gene=rplB;inference=protein motif:Prosite:PS00467;locus_tag=Cj1704c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1618554	1618784	.	-	.	ID=id-Cj1704c-3;Note=HMMPfam hit to PF00181%2C Ribosomal Proteins L2%2C RNA binding dom%2C score 4.1e-40;gbkey=misc_feature;gene=rplB;inference=protein motif:Pfam:PF00181;locus_tag=Cj1704c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1618909	1619190	.	-	.	ID=gene-Cj1705c;Name=rplW;gbkey=Gene;gene=rplW;gene_biotype=protein_coding;locus_tag=Cj1705c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1618909	1619190	.	-	0	ID=cds-CAL35799.1;Parent=gene-Cj1705c;Dbxref=EnsemblGenomes-Gn:Cj1705c,EnsemblGenomes-Tr:CAL35799,GOA:Q0P7S6,InterPro:IPR012677,InterPro:IPR012678,InterPro:IPR013025,NCBI_GP:CAL35799.1;Name=CAL35799.1;Note=Original (2000) note: Cj1705c%2C rplW%2C 50S ribosomal protein L23%2C len: 93 aa%3B similar to many e.g. RL23_ECOLI 50S ribosomal protein L23 (100 aa)%2C fasta scores%3B opt: 165 z-score: 228.2 E(): 2.2e-05%2C 34.6%25 identity in 78 aa overlap. 65.9%25 identity to HP1317. Contains Pfam match to entry PF00276 L23%2C Ribosomal protein L23%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:3892488%2C PMID:9371452%2C PMID:6988670;gbkey=CDS;gene=rplW;inference=protein motif:Pfam:PF00276;locus_tag=Cj1705c;product=50S ribosomal protein L23;protein_id=CAL35799.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1618912	1619172	.	-	.	ID=id-Cj1705c;Note=HMMPfam hit to PF00276%2C Ribosomal protein L23%2Cscore 2.7e-09;gbkey=misc_feature;gene=rplW;inference=protein motif:Pfam:PF00276;locus_tag=Cj1705c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1619193	1619807	.	-	.	ID=gene-Cj1706c;Name=rplD;gbkey=Gene;gene=rplD;gene_biotype=protein_coding;locus_tag=Cj1706c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1619193	1619807	.	-	0	ID=cds-CAL35800.1;Parent=gene-Cj1706c;Dbxref=EnsemblGenomes-Gn:Cj1706c,EnsemblGenomes-Tr:CAL35800,GOA:Q9PLX2,InterPro:IPR002136,InterPro:IPR013005,InterPro:IPR023574,NCBI_GP:CAL35800.1;Name=CAL35800.1;Note=Original (2000) note: Cj1706c%2C rplD%2C 50S ribosomal protein L4%2C len: 204 aa%3B similar to many e.g. RL4_BACSU 50S ribosomal protein L4 (207 aa)%2C fasta scores%3B opt: 417 z-score: 505.3 E(): 8e-21%2C 36.5%25 identity in 203 aa overlap. 50.2%25 identity to HP1318%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:3892488%2C PMID:9371452;gbkey=CDS;gene=rplD;locus_tag=Cj1706c;product=50S ribosomal protein L4;protein_id=CAL35800.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1619199	1619765	.	-	.	ID=id-Cj1706c;Note=HMMPfam hit to PF00573%2C Ribosomal protein L4/L1 family%2C score 1.6e-49;gbkey=misc_feature;gene=rplD;inference=protein motif:Pfam:PF00573;locus_tag=Cj1706c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1619804	1620379	.	-	.	ID=gene-Cj1707c;Name=rplC;gbkey=Gene;gene=rplC;gene_biotype=protein_coding;locus_tag=Cj1707c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1619804	1620379	.	-	0	ID=cds-CAL35801.1;Parent=gene-Cj1707c;Dbxref=EnsemblGenomes-Gn:Cj1707c,EnsemblGenomes-Tr:CAL35801,GOA:Q9PLX1,InterPro:IPR000597,InterPro:IPR009000,InterPro:IPR019927,NCBI_GP:CAL35801.1;Name=CAL35801.1;Note=Original (2000) note: Cj1707c%2C rplC%2C 50S ribosomal protein L3%2C len: 191 aa%3B similar to many e.g. RL3_THEMA 50S ribosomal protein L3 (207 aa)%2C fasta scores%3B opt: 399 z-score: 480.0 E(): 2.1e-19%2C 40.4%25 identity in 203 aa overlap. 64.0%25 identity to HP1319. Contains Pfam match to entry PF00297 L3%2C Ribosomal protein L3%3B~Updated (2006) note: Characterised within Bacillus subtilis%2C Escherichia coli and also Thermotoga maritima with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:3892488%2C PMID:9371452%2C PMID:365579%2CPMID:8002596;gbkey=CDS;gene=rplC;inference=protein motif:Pfam:PF00297;locus_tag=Cj1707c;product=50S ribosomal protein L3;protein_id=CAL35801.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1619816	1620361	.	-	.	ID=id-Cj1707c;Note=HMMPfam hit to PF00297%2C Ribosomal protein L3%2C score 2.3e-18;gbkey=misc_feature;gene=rplC;inference=protein motif:Pfam:PF00297;locus_tag=Cj1707c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1620389	1620700	.	-	.	ID=gene-Cj1708c;Name=rpsJ;gbkey=Gene;gene=rpsJ;gene_biotype=protein_coding;locus_tag=Cj1708c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1620389	1620700	.	-	0	ID=cds-CAL35802.1;Parent=gene-Cj1708c;Dbxref=EnsemblGenomes-Gn:Cj1708c,EnsemblGenomes-Tr:CAL35802,GOA:Q9PLX0,InterPro:IPR001848,InterPro:IPR018268,InterPro:IPR027486,NCBI_GP:CAL35802.1;Name=CAL35802.1;Note=Original (2000) note: Cj1708c%2C rpsJ%2C 30S ribosomal protein S10%2C len: 103 aa%3B similar to many e.g. RS10_ECOLI 30S ribosomal protein S10 (103 aa)%2C fasta scores%3B opt: 407 z-score: 522.4 E(): 8.9e-22%2C 58.8%25 identity in 97 aa overlap. 78.2%25 identity to HP1320. Contains PS00361 Ribosomal protein S10 signature%2C and Pfam match to entry PF00338 S10%2C Ribosomal protein S10%3B~Updated (2006) note: Characterised within Bacillus subtilis and Escherichia coli with acceptable identity scores. Putative not added to product function. Functional classification - Ribosomal protein synthesis and modification%3B~PMID:3892488%2C PMID:9371452%2C PMID:6806564%2CPMID:7007073;gbkey=CDS;gene=rpsJ;inference=protein motif:Prosite:PS00361;locus_tag=Cj1708c;product=30S ribosomal protein S10;protein_id=CAL35802.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1620407	1620694	.	-	.	ID=id-Cj1708c;Note=HMMPfam hit to PF00338%2C Ribosomal protein S10p/S20e%2C score 9.1e-49;gbkey=misc_feature;gene=rpsJ;inference=protein motif:Pfam:PF00338;locus_tag=Cj1708c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1620575	1620622	.	-	.	ID=id-Cj1708c-2;Note=PS00361 Ribosomal protein S10 signature;gbkey=misc_feature;gene=rpsJ;inference=protein motif:Prosite:PS00361;locus_tag=Cj1708c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1620899	1621660	.	-	.	ID=gene-Cj1709c;Name=Cj1709c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1709c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1620899	1621660	.	-	0	ID=cds-CAL35803.1;Parent=gene-Cj1709c;Dbxref=EnsemblGenomes-Gn:Cj1709c,EnsemblGenomes-Tr:CAL35803,GOA:Q0P7S2,InterPro:IPR000748,InterPro:IPR002942,InterPro:IPR006145,InterPro:IPR018496,InterPro:IPR020103,UniProtKB/TrEMBL:Q0P7S2,NCBI_GP:CAL35803.1;Name=CAL35803.1;Note=Original (2000) note: Cj1709c%2C probable ribosomal pseudouridine synthase%2C len: 253 aa%3B similar to e.g. RLUB_BACSU ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) (229 aa)%2C fasta scores%3B opt: 338 z-score: 414.2 E(): 9.5e-16%2C 33.9%25 identity in 236 aa overlap. 50.4%25 identity to HP1459. Contains PS01149 RsuA family of pseudouridine synthase signature%3B~Updated (2006) note: Pfam domain PF00849 RNA pseudouridylate synthase and PF01479 S4 domain were identified within CDS. Further support given to product function. Characterisation work within Bacillus subtilis and others with marginal identity scores. Putative kept in product function. Functional classification - Ribosome maturation and modification%3B~PMID:9888802;gbkey=CDS;inference=protein motif:Prosite:PS01149;locus_tag=Cj1709c;product=putative ribosomal pseudouridine synthase;protein_id=CAL35803.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1621046	1621483	.	-	.	ID=id-Cj1709c;Note=HMMPfam hit to PF00849%2C RNA pseudouridylate synthase%2C score 2.2e-07;gbkey=misc_feature;inference=protein motif:Pfam:PF00849;locus_tag=Cj1709c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1621325	1621369	.	-	.	ID=id-Cj1709c-2;Note=PS01149 Rsu family of pseudouridine synthase signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01149;locus_tag=Cj1709c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1621523	1621660	.	-	.	ID=id-Cj1709c-3;Note=HMMPfam hit to PF01479%2C S4 domain%2C score 3.6e-09;gbkey=misc_feature;inference=protein motif:Pfam:PF01479;locus_tag=Cj1709c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1621628	1621651	.	-	.	ID=id-Cj1709c-4;Note=PS00881 Protein splicing signature;gbkey=misc_feature;inference=protein motif:Prosite:PS00881;locus_tag=Cj1709c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1621696	1623690	.	-	.	ID=gene-Cj1710c;Name=Cj1710c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1710c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1621696	1623690	.	-	0	ID=cds-CAL35804.1;Parent=gene-Cj1710c;Dbxref=EnsemblGenomes-Gn:Cj1710c,EnsemblGenomes-Tr:CAL35804,GOA:Q0P7S1,InterPro:IPR001279,InterPro:IPR001587,InterPro:IPR004613,InterPro:IPR011108,UniProtKB/TrEMBL:Q0P7S1,NCBI_GP:CAL35804.1;Name=CAL35804.1;Note=Original (2000) note: Cj1710c%2C unknown%2C len: 664 aa%3B similar to hypothetical proteins e.g. YKQC_BACSU (555 aa)%2C fasta scores%3B opt: 1429 z-score: 1605.6 E(): 0%2C 39.5%25 identity in 544 aa overlap. N-terminal 100 aa is evry hydrophilic%2C and is conserved only with the Hp homolog and YOR4_CORGL (645 aa)%2C fasta scores%3B opt: 1223 z-score: 1373.2 E(): 0%2C 34.4%25 identity in 613 aa overlap. 55.3%25 identity to HP1430. Contains S01292 Uncharacterized protein family UPF0036 signature%2C and fam match to entry PF00753 lactamase_B%2C Metallo-beta-lactamase superfamily%3B~Updated (2006) note: Pfam domains PF07521 RNA-metabolising metallo-beta-lactamase and PF00753 Metallo-beta-lactamase superfamily identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation has been carried out yet with acceptable simiarity score. Thus%2C putative kept within product function. Functional classification -Misc;gbkey=CDS;inference=protein motif:Pfam:PF07521;locus_tag=Cj1710c;product=putative metallo-beta-lactamase family protein;protein_id=CAL35804.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1622182	1622304	.	-	.	ID=id-Cj1710c;Note=HMMPfam hit to PF07521%2C RNA-metabolising metallo-beta-lactamase%2C score 4.4e-11;gbkey=misc_feature;inference=protein motif:Pfam:PF07521;locus_tag=Cj1710c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1622188	1622274	.	-	.	ID=id-Cj1710c-2;Note=PS01292 Uncharacterized protein family UPF0036 signature;gbkey=misc_feature;inference=protein motif:Prosite:PS01292;locus_tag=Cj1710c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1622719	1623309	.	-	.	ID=id-Cj1710c-3;Note=HMMPfam hit to PF00753%2C Metallo-beta-lactamase superfamily%2C score 1.8e-26;gbkey=misc_feature;inference=protein motif:Pfam:PF00753;locus_tag=Cj1710c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1623659	1624459	.	-	.	ID=gene-Cj1711c;Name=ksgA;gbkey=Gene;gene=ksgA;gene_biotype=protein_coding;locus_tag=Cj1711c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1623659	1624459	.	-	0	ID=cds-CAL35805.1;Parent=gene-Cj1711c;Dbxref=EnsemblGenomes-Gn:Cj1711c,EnsemblGenomes-Tr:CAL35805,GOA:Q9PLW7,InterPro:IPR001737,InterPro:IPR011530,InterPro:IPR020596,InterPro:IPR020598,InterPro:IPR023165,InterPro:IPR029063,NCBI_GP:CAL35805.1;Name=CAL35805.1;Note=Original (2000) note: Cj1711c%2C ksgA%2C probable dimethyladenosine transferase (16S rRNA dimethylase)%2C len: 266 aa%3B similar to many e.g. KSGA_BACSU dimethyladenosine transferase (EC 2.1.1.-) (292 aa)%2C fasta scores%3B opt: 425 z-score: 511.0 E(): 3.8e-21%2C 35.6%25 identity in 270 aa overlap. 41.0%25 identity to HP1431. Contains Pfam match to entry PF00398 RrnaAD%2C Ribosomal RNA adenine dimethylases%3B~Updated (2006) note: Characterised within Escherichia coli%2C however%2C identity score was marginal. Thus%2C putative kept within product function. Functional classification - Ribosome maturation and modification%3B~PMID:3122846%2C PMID:3905517;gbkey=CDS;gene=ksgA;inference=protein motif:Pfam:PF00398;locus_tag=Cj1711c;product=putative dimethyladenosine transferase (16S rRNA dimethylase);protein_id=CAL35805.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1623689	1624459	.	-	.	ID=id-Cj1711c;Note=HMMPfam hit to PF00398%2C Ribosomal RNA adenine dimethylase%2C score 1.4e-42;gbkey=misc_feature;gene=ksgA;inference=protein motif:Pfam:PF00398;locus_tag=Cj1711c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1623818	1623838	.	-	.	ID=id-Cj1711c-2;Note=PS00322 Histone H3 signature 1;gbkey=misc_feature;gene=ksgA;inference=protein motif:Prosite:PS00322;locus_tag=Cj1711c
gi|15791399|ref|NC_002163.1|	EMBL	stem_loop	1624460	1624517	.	+	.	ID=id-gi|15791399|ref|NC_002163.1|:1624460..1624517;gbkey=stem_loop
gi|15791399|ref|NC_002163.1|	EMBL	gene	1624541	1625077	.	+	.	ID=gene-Cj1712;Name=Cj1712;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1712
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1624541	1625077	.	+	0	ID=cds-CAL35806.1;Parent=gene-Cj1712;Dbxref=EnsemblGenomes-Gn:Cj1712,EnsemblGenomes-Tr:CAL35806,GOA:Q0P7R9,InterPro:IPR000845,UniProtKB/TrEMBL:Q0P7R9,NCBI_GP:CAL35806.1;Name=CAL35806.1;Note=Original (2000) note: Cj1712%2C unknown%2C len: 178 aa%3B 40.9%25 identity to HP1530 (called purine nucleoside phosphorylase (punB). Functional classification -Conserved hypothetical proteins;gbkey=CDS;locus_tag=Cj1712;product=hypothetical protein Cj1712;protein_id=CAL35806.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1625100	1626170	.	+	.	ID=gene-Cj1713;Name=Cj1713;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1713
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1625100	1626170	.	+	0	ID=cds-CAL35807.1;Parent=gene-Cj1713;Dbxref=EnsemblGenomes-Gn:Cj1713,EnsemblGenomes-Tr:CAL35807,GOA:Q0P7R8,InterPro:IPR004383,InterPro:IPR006638,InterPro:IPR007197,InterPro:IPR013785,InterPro:IPR027492,NCBI_GP:CAL35807.1;Name=CAL35807.1;Note=Original (2000) note: Cj1713%2C unknown%2C len: 356 aa%3B similar to hypothetical proteins e.g. YFGB_ECOLI (384 aa)%2Cfasta scores%3B opt: 799 z-score: 910.4 E(): 0%2C 39.8%25 identity in 357 aa overlap. 56.8%25 identity to HP1428%3B~Updated (2006) note: Pfam domain PF04055 Radical SAM superfamily identified within CDS. Product modified to more specific family member based on motif match. No specific characterisation with acceptable identity score has been carried out yet. Putative kept within product function. Functional classification - Misc;gbkey=CDS;inference=protein motif:Pfam:PF04055;locus_tag=Cj1713;product=putative radical SAM domain protein;protein_id=CAL35807.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1625445	1625960	.	+	.	ID=id-Cj1713;Note=HMMPfam hit to PF04055%2C Radical SAM superfamily%2Cscore 1.9e-13;gbkey=misc_feature;inference=protein motif:Pfam:PF04055;locus_tag=Cj1713
gi|15791399|ref|NC_002163.1|	EMBL	gene	1626167	1626265	.	+	.	ID=gene-Cj1714;Name=Cj1714;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1714
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1626167	1626265	.	+	0	ID=cds-CAL35808.1;Parent=gene-Cj1714;Dbxref=EnsemblGenomes-Gn:Cj1714,EnsemblGenomes-Tr:CAL35808,UniProtKB/TrEMBL:Q0P7R7,NCBI_GP:CAL35808.1;Name=CAL35808.1;Note=Original (2000) note: Cj1714%2C small hydrophobic protein%2C len: 32 aa%3B no Hp match%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Functional classification -Unknown;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1714;product=small hydrophobic protein;protein_id=CAL35808.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1626182	1626250	.	+	.	ID=id-Cj1714;Note=1 probable transmembrane helix predicted for Cj1714 by TMHMM2.0 at aa 6-28;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1714
gi|15791399|ref|NC_002163.1|	EMBL	gene	1626279	1626355	.	-	.	ID=gene-tRNA-Met-3;Name=tRNA-Met;gbkey=Gene;gene=tRNA-Met;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1626279	1626355	.	-	.	ID=rna-tRNA-Met-3;Parent=gene-tRNA-Met-3;Note=tRNA Met anticodon CAT%2C Cove score 81.03;gbkey=tRNA;gene=tRNA-Met;product=tRNA-Met
gi|15791399|ref|NC_002163.1|	EMBL	exon	1626279	1626355	.	-	.	ID=exon-tRNA-Met-3-1;Parent=rna-tRNA-Met-3;Note=tRNA Met anticodon CAT%2C Cove score 81.03;gbkey=tRNA;gene=tRNA-Met;product=tRNA-Met
gi|15791399|ref|NC_002163.1|	EMBL	gene	1626491	1626578	.	+	.	ID=gene-tRNA-Ser-3;Name=tRNA-Ser;gbkey=Gene;gene=tRNA-Ser;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1626491	1626578	.	+	.	ID=rna-tRNA-Ser-3;Parent=gene-tRNA-Ser-3;Note=tRNA Ser anticodon GGA%2C Cove score 63.73;gbkey=tRNA;gene=tRNA-Ser;product=tRNA-Ser
gi|15791399|ref|NC_002163.1|	EMBL	exon	1626491	1626578	.	+	.	ID=exon-tRNA-Ser-3-1;Parent=rna-tRNA-Ser-3;Note=tRNA Ser anticodon GGA%2C Cove score 63.73;gbkey=tRNA;gene=tRNA-Ser;product=tRNA-Ser
gi|15791399|ref|NC_002163.1|	EMBL	gene	1626625	1626700	.	+	.	ID=gene-tRNA-Ala-4;Name=tRNA-Ala;gbkey=Gene;gene=tRNA-Ala;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1626625	1626700	.	+	.	ID=rna-tRNA-Ala-4;Parent=gene-tRNA-Ala-4;Note=tRNA Ala anticodon GGC%2C Cove score 84.81;gbkey=tRNA;gene=tRNA-Ala;product=tRNA-Ala
gi|15791399|ref|NC_002163.1|	EMBL	exon	1626625	1626700	.	+	.	ID=exon-tRNA-Ala-4-1;Parent=rna-tRNA-Ala-4;Note=tRNA Ala anticodon GGC%2C Cove score 84.81;gbkey=tRNA;gene=tRNA-Ala;product=tRNA-Ala
gi|15791399|ref|NC_002163.1|	EMBL	gene	1626704	1626779	.	+	.	ID=gene-tRNA-Val-3;Name=tRNA-Val;gbkey=Gene;gene=tRNA-Val;gene_biotype=tRNA
gi|15791399|ref|NC_002163.1|	EMBL	tRNA	1626704	1626779	.	+	.	ID=rna-tRNA-Val-3;Parent=gene-tRNA-Val-3;Note=tRNA Val anticodon GAC%2C Cove score 82.27;gbkey=tRNA;gene=tRNA-Val;product=tRNA-Val
gi|15791399|ref|NC_002163.1|	EMBL	exon	1626704	1626779	.	+	.	ID=exon-tRNA-Val-3-1;Parent=rna-tRNA-Val-3;Note=tRNA Val anticodon GAC%2C Cove score 82.27;gbkey=tRNA;gene=tRNA-Val;product=tRNA-Val
gi|15791399|ref|NC_002163.1|	EMBL	gene	1626807	1627337	.	+	.	ID=gene-Cj1715;Name=Cj1715;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1715
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1626807	1627337	.	+	0	ID=cds-CAL35809.1;Parent=gene-Cj1715;Dbxref=EnsemblGenomes-Gn:Cj1715,EnsemblGenomes-Tr:CAL35809,GOA:Q0P7R6,InterPro:IPR000182,InterPro:IPR016181,UniProtKB/TrEMBL:Q0P7R6,NCBI_GP:CAL35809.1;Name=CAL35809.1;Note=Original (2000) note: Cj1715%2C possible acetyltransferase%2C len: 176 aa%3B similar to several plasmid-or integron-encoded genes e.g. STA_ECOLI streptothricin acetyltransferase (174 aa)%2C fasta scores%3B opt: 149 z-score: 192.6 E(): 0.0021%2C 21.7%25 identity in 161 aa overlap%2C and TR:P75025 (EMBL:P75025) plasmid PVS1 hypothetical protein (166 aa)%2C fasta scores%3B opt: 201 z-score: 255.1 E(): 6.9e-07%2C 26.1%25 identity in 161 aa overlap. Also simlilar to TR:O31513 (EMBL:Z99107) Bacillus subtilis chromosomal YESJ protein (180 aa)%2C fasta scores%3B opt: 157 z-score: 202.0 E(): 0.00063%2C 20.6%25 identity in 155 aa overlap. No Hp match. Contains Pfam match to entry PF00583 Acetyltransf%2C Acetyltransferase (GNAT) family%3B~Updated (2006) note: Specific characterisation with acceptable identity score has not been carried out yet. Thus%2C putative kept within product function. Functional classification - Antibiotic resistance;gbkey=CDS;inference=protein motif:Pfam:PF00583;locus_tag=Cj1715;product=putative acetyltransferase;protein_id=CAL35809.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1626972	1627256	.	+	.	ID=id-Cj1715;Note=HMMPfam hit to PF00583%2C Acetyltransferase (GNAT) family%2C score 1.7e-13;gbkey=misc_feature;inference=protein motif:Pfam:PF00583;locus_tag=Cj1715
gi|15791399|ref|NC_002163.1|	EMBL	gene	1627317	1627919	.	-	.	ID=gene-Cj1716c;Name=leuD;gbkey=Gene;gene=leuD;gene_biotype=protein_coding;locus_tag=Cj1716c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1627317	1627919	.	-	0	ID=cds-CAL35810.1;Parent=gene-Cj1716c;Dbxref=EnsemblGenomes-Gn:Cj1716c,EnsemblGenomes-Tr:CAL35810,GOA:Q9PLW2,InterPro:IPR000573,InterPro:IPR004431,InterPro:IPR015928,InterPro:IPR015937,NCBI_GP:CAL35810.1;Name=CAL35810.1;Note=Original (2000) note: Cj1716c%2C leuD%2C probable 3-isopropylmalate dehydratase small subunit%2C len: 200 aa%3B similar to many e.g. LEUD_ECOLI 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) (201 aa)%2C fasta scores%3B opt: 656 z-score: 792.2 E(): 0%2C 49.5%25 identity in 198 aa overlap. No Hp match. Contains Pfam match to entry PF00694 Aconitase_C%2C Aconitase C-terminal domain%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative removed from product function. Functional classification -Amino acid biosynthesis - Branched chain family%3B~PMID:6171647%2C PMID:9813279;gbkey=CDS;gene=leuD;inference=protein motif:Pfam:PF00694;locus_tag=Cj1716c;product=3-isopropylmalate dehydratase small subunit;protein_id=CAL35810.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1627542	1627919	.	-	.	ID=id-Cj1716c;Note=HMMPfam hit to PF00694%2C Aconitase C-terminal domain%2C score 7.2e-54;gbkey=misc_feature;gene=leuD;inference=protein motif:Pfam:PF00694;locus_tag=Cj1716c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1627921	1629333	.	-	.	ID=gene-Cj1717c;Name=leuC;gbkey=Gene;gene=leuC;gene_biotype=protein_coding;locus_tag=Cj1717c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1627921	1629333	.	-	0	ID=cds-CAL35811.1;Parent=gene-Cj1717c;Dbxref=EnsemblGenomes-Gn:Cj1717c,EnsemblGenomes-Tr:CAL35811,GOA:Q9PLW1,InterPro:IPR001030,InterPro:IPR004430,InterPro:IPR015931,InterPro:IPR015932,InterPro:IPR015937,InterPro:IPR018136,NCBI_GP:CAL35811.1;Name=CAL35811.1;Note=Original (2000) note: Cj1717c%2C leuC%2C probable 3-isopropylmalate dehydratase large subunit%2C len: 470 aa%3B highly similar to many e.g. LEU2_ECOLI 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) (465 aa)%2C fasta scores%3B opt: 1906 z-score: 2187.5 E(): 0%2C 60.4%25 identity in 462 aa overlap. No Hp ortholog. Contains PS00450 and PS01244 Aconitase family signatures 1 and 2%2C and Pfam match to entry PF00330 aconitase%2C Aconitase family (aconitate hydratase)%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Branched chain family%3B~PMID:6171647%2C PMID:9813279;gbkey=CDS;gene=leuC;inference=protein motif:Prosite:PS01244;locus_tag=Cj1717c;product=3-isopropylmalate dehydratase large subunit;protein_id=CAL35811.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1627957	1629318	.	-	.	ID=id-Cj1717c;Note=HMMPfam hit to PF00330%2C Aconitase family (aconitate hydratase)%2C score 3.1e-218;gbkey=misc_feature;gene=leuC;inference=protein motif:Pfam:PF00330;locus_tag=Cj1717c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1627969	1628001	.	-	.	ID=id-Cj1717c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=leuC;inference=protein motif:Prosite:PS00013;locus_tag=Cj1717c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1628092	1628133	.	-	.	ID=id-Cj1717c-3;Note=PS01244 Aconitase family signature 2;gbkey=misc_feature;gene=leuC;inference=protein motif:Prosite:PS01244;locus_tag=Cj1717c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1628263	1628313	.	-	.	ID=id-Cj1717c-4;Note=PS00450 Aconitase family signature 1;gbkey=misc_feature;gene=leuC;inference=protein motif:Prosite:PS00450;locus_tag=Cj1717c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1629320	1630396	.	-	.	ID=gene-Cj1718c;Name=leuB;gbkey=Gene;gene=leuB;gene_biotype=protein_coding;locus_tag=Cj1718c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1629320	1630396	.	-	0	ID=cds-CAL35812.1;Parent=gene-Cj1718c;Dbxref=EnsemblGenomes-Gn:Cj1718c,EnsemblGenomes-Tr:CAL35812,GOA:Q9PLW0,InterPro:IPR001804,InterPro:IPR004429,InterPro:IPR019818,InterPro:IPR024084,PDB:3UDO,PDB:3UDU,NCBI_GP:CAL35812.1;Name=CAL35812.1;Note=Original (2000) note: Cj1718c%2C leuB%2C probable 3-isopropylmalate dehydrogenase%2C len: 358 aa%3B highly similar to many e.g. LEU3_ECOLI 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (362 aa)%2C fasta scores%3B opt: 1389 z-score: 1612.4 E(): 0%2C 59.9%25 identity in 359 aa overlap. No Hp ortholog. Contains PS00470 Isocitrate and isopropylmalate dehydrogenases signature%2C and Pfam match to entry PF00180 isodh%2C Isocitrate and isopropylmalate dehydrogenases%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity scores. Appropriate motifs were also present. Putative not added to product function. Functional classification - Amino acid biosynthesis - Branched chain family%3B~PMID:9086278%2C PMID:8875643%2C PMID:8119295%2CPMID:6171647%2C PMID:9813279;gbkey=CDS;gene=leuB;inference=protein motif:Prosite:PS00470;locus_tag=Cj1718c;product=3-isopropylmalate dehydrogenase;protein_id=CAL35812.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1629353	1630384	.	-	.	ID=id-Cj1718c;Note=HMMPfam hit to PF00180%2C Isocitrate/isopropylmalate dehydrogenase%2C score 2.3e-191;gbkey=misc_feature;gene=leuB;inference=protein motif:Pfam:PF00180;locus_tag=Cj1718c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1629617	1629676	.	-	.	ID=id-Cj1718c-2;Note=PS00470 Isocitrate and isopropylmalate dehydrogenases signature;gbkey=misc_feature;gene=leuB;inference=protein motif:Prosite:PS00470;locus_tag=Cj1718c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1630393	1631928	.	-	.	ID=gene-Cj1719c;Name=leuA;gbkey=Gene;gene=leuA;gene_biotype=protein_coding;locus_tag=Cj1719c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1630393	1631928	.	-	0	ID=cds-CAL35813.1;Parent=gene-Cj1719c;Dbxref=EnsemblGenomes-Gn:Cj1719c,EnsemblGenomes-Tr:CAL35813,GOA:Q9PLV9,InterPro:IPR000891,InterPro:IPR002034,InterPro:IPR005671,InterPro:IPR013709,InterPro:IPR013785,NCBI_GP:CAL35813.1;Name=CAL35813.1;Note=Original (2000) note: Cj1719c%2C leuA%2C probable 2-isopropylmalate synthase%2C len: 511 aa%3B highly similar to many e.g. LEU1_ECOLI 2-isopropylmalate synthase (EC 4.1.3.12) (522 aa)%2C fasta scores%3B opt: 1964 z-score: 2248.2 E(): 0%2C 60.0%25 identity in 505 aa overlap. No Hp match. Contains PS00815 and PS00816 Alpha-isopropylmalate and homocitrate synthases signatures 1 and 2%2C and Pfam match to entry PF00682 HMGL-like%2C HMGL-like%3B~Updated (2006) note: Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification -Amino acid biosynthesis - Branched chain family%3B~PMID:6171647%2C PMID:9813279;gbkey=CDS;gene=leuA;inference=protein motif:Prosite:PS00816;locus_tag=Cj1719c;product=2-isopropylmalate synthase;protein_id=CAL35813.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1631086	1631889	.	-	.	ID=id-Cj1719c;Note=HMMPfam hit to PF00682%2C HMGL-like%2C score 3.1e-133;gbkey=misc_feature;gene=leuA;inference=protein motif:Pfam:PF00682;locus_tag=Cj1719c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1631290	1631331	.	-	.	ID=id-Cj1719c-2;Note=PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2;gbkey=misc_feature;gene=leuA;inference=protein motif:Prosite:PS00816;locus_tag=Cj1719c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1631842	1631892	.	-	.	ID=id-Cj1719c-3;Note=PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1;gbkey=misc_feature;gene=leuA;inference=protein motif:Prosite:PS00815;locus_tag=Cj1719c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1632248	1632877	.	+	.	ID=gene-Cj1720;Name=Cj1720;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1720
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1632248	1632877	.	+	0	ID=cds-CAL35814.1;Parent=gene-Cj1720;Dbxref=EnsemblGenomes-Gn:Cj1720,EnsemblGenomes-Tr:CAL35814,UniProtKB/TrEMBL:Q0P7R1,NCBI_GP:CAL35814.1;Name=CAL35814.1;Note=Original (2000) note: Cj1720%2C unknown%2C len: 209 aa%3B no Hp match. Functional classification - Unknown;gbkey=CDS;locus_tag=Cj1720;product=hypothetical protein Cj1720;protein_id=CAL35814.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1632901	1633545	.	-	.	ID=gene-Cj1721c;Name=Cj1721c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1721c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1632901	1633545	.	-	0	ID=cds-CAL35815.1;Parent=gene-Cj1721c;Dbxref=EnsemblGenomes-Gn:Cj1721c,EnsemblGenomes-Tr:CAL35815,GOA:Q0P7R0,InterPro:IPR011250,InterPro:IPR027385,UniProtKB/TrEMBL:Q0P7R0,NCBI_GP:CAL35815.1;Name=CAL35815.1;Note=Original (2000) note: Cj1721c%2C possible outer membrane protein%2C len: 214 aa%3B very weak similarity to several e.g. TR:P95343 (EMBL:U52069) Neisseria gonorrhoeae outer membrane protein precursor (174 aa)%2C blastp scores%3B E%3D 0.0043%2C 29%25 identity in 176 aa overlap. Contains probable N-terminal signal sequence. 22.3%25 identity to HP0706 (outer membrane protein (omp15)). Functional classification - Membranes%2C lipoproteins and porins;gbkey=CDS;locus_tag=Cj1721c;product=putative outer membrane protein;protein_id=CAL35815.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1633791	1633892	.	-	.	ID=gene-Cj1722c;Name=Cj1722c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1722c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1633791	1633892	.	-	0	ID=cds-CAL35816.1;Parent=gene-Cj1722c;Dbxref=EnsemblGenomes-Gn:Cj1722c,EnsemblGenomes-Tr:CAL35816,UniProtKB/TrEMBL:Q0P7Q9,NCBI_GP:CAL35816.1;Name=CAL35816.1;Note=Original (2000) note: Cj1722c%2C unknown%2C len: 33 aa%3B no Hp match. Similar to the N-termini of predicted periplasmic proteins Cj1626c (53.1%25 identity in 32 aa overlap)%2C and Cj1004 (46.2%25 identity in 26 aa overlap). Functional classification - Unknown;gbkey=CDS;locus_tag=Cj1722c;product=hypothetical protein Cj1722c;protein_id=CAL35816.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1633895	1634119	.	-	.	ID=gene-Cj1723c;Name=Cj1723c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1723c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1633895	1634119	.	-	0	ID=cds-CAL35817.1;Parent=gene-Cj1723c;Dbxref=EnsemblGenomes-Gn:Cj1723c,EnsemblGenomes-Tr:CAL35817,UniProtKB/TrEMBL:Q0P7Q8,NCBI_GP:CAL35817.1;Name=CAL35817.1;Note=Original (2000) note: Cj1723c%2C probable periplasmic protein%2C len: 74 aa%3B no Hp match. Contains probable N-terminal signal sequence. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1723c;product=putative periplasmic protein;protein_id=CAL35817.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	gene	1634296	1634679	.	-	.	ID=gene-Cj1724c;Name=Cj1724c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1724c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1634296	1634679	.	-	0	ID=cds-CAL35818.1;Parent=gene-Cj1724c;Dbxref=EnsemblGenomes-Gn:Cj1724c,EnsemblGenomes-Tr:CAL35818,GOA:Q9PLV4,InterPro:IPR016856,InterPro:IPR029500,NCBI_GP:CAL35818.1;Name=CAL35818.1;Note=Original (2000) note: Cj1724c%2C unknown%2C len: 127 aa%3B similar to hypothetical proteins e.g. TR:O67073 (EMBL:AE000714) Aquifex aeolicus AQ_931 (129 aa)%2C fasta scores%3B opt: 512 z-score: 666.5 E(): 8.4e-30%2C 59.0%25 identity in 122 aa overlap. 39.4%25 identity to HP1413%3B~Updated (2006) note: Pfam domain PF01227 GTP cyclohydrolase I identified within CDS. Some characterisation work within Bacillus subtilis with acceptable identity score. Product modified to more specific family member. Putative kept within product function. Functional classification - Biosynthesis of cofactors%2C prosthetic groups and carriers - Folic acid%3B~PMID:7542887%2C PMID:15767583%2C PMID:16511203;gbkey=CDS;inference=protein motif:Pfam:PF01227;locus_tag=Cj1724c;product=putative GTP cyclohydrolase I;protein_id=CAL35818.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1634302	1634601	.	-	.	ID=id-Cj1724c;Note=HMMPfam hit to PF01227%2C GTP cyclohydrolase I%2C score 1.1e-55;gbkey=misc_feature;inference=protein motif:Pfam:PF01227;locus_tag=Cj1724c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1634839	1635438	.	+	.	ID=gene-Cj1725;Name=Cj1725;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1725
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1634839	1635438	.	+	0	ID=cds-CAL35819.1;Parent=gene-Cj1725;Dbxref=EnsemblGenomes-Gn:Cj1725,EnsemblGenomes-Tr:CAL35819,GOA:Q0P7Q6,InterPro:IPR013027,InterPro:IPR023753,UniProtKB/TrEMBL:Q0P7Q6,NCBI_GP:CAL35819.1;Name=CAL35819.1;Note=Original (2000) note: Cj1725%2C probable periplasmic protein%2C len: 199 aa%3B similar to TR:O66724 (EMBL:AE000688) Aquifex aeolicus AQ_407 (203 aa)%2C fasta scores%3B opt: 411 z-score: 483.0 E(): 1.4e-19%2C 34.0%25 identity in 203 aa overlap. No Hp match. Functional classification -Miscellaneous periplasmic proteins;gbkey=CDS;locus_tag=Cj1725;product=putative periplasmic protein;protein_id=CAL35819.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1634851	1634910	.	+	.	ID=id-Cj1725;Note=1 probable transmembrane helix predicted for Cj1725 by TMHMM2.0 at aa 5-24;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1725
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1635310	1635342	.	+	.	ID=id-Cj1725-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1725
gi|15791399|ref|NC_002163.1|	EMBL	gene	1635443	1636324	.	-	.	ID=gene-Cj1726c;Name=metA;gbkey=Gene;gene=metA;gene_biotype=protein_coding;locus_tag=Cj1726c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1635443	1636324	.	-	0	ID=cds-CAL35820.1;Parent=gene-Cj1726c;Dbxref=EnsemblGenomes-Gn:Cj1726c,EnsemblGenomes-Tr:CAL35820,GOA:Q9PLV2,InterPro:IPR005697,InterPro:IPR029062,NCBI_GP:CAL35820.1;Name=CAL35820.1;Note=Original (2000) note: Cj1726c%2C metA%2C probable homoserine O-succinyltransferase%2C len: 293 aa%3B simlar to e.g. META_ECOLI homoserine O-succinyltransferase (EC 2.3.1.46) (309 aa)%2C fasta scoresa%3B opt: 795 z-score: 948.3 E(): 0%2C 42.0%25 identity in 305 aa overlap. No Hp match%3B~Updated (2006) note: Pfam motif PF04204 Homoserine O-succinyltransferase identified covering all CDS. Characterisation has been carried out within Escherichia coli with acceptable identity score. Appropriate motifs present. Putative removed from product function. Functional classification - Amino acid biosynthesis -Aspartate family%3B~PMID:2654885%2C PMID:10572016%2C PMID:15933025;gbkey=CDS;gene=metA;inference=protein motif:Pfam:PF04204;locus_tag=Cj1726c;product=homoserine O-succinyltransferase;protein_id=CAL35820.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1635452	1636321	.	-	.	ID=id-Cj1726c;Note=HMMPfam hit to PF04204%2C Homoserine O-succinyltransferase%2C score 6.7e-185;gbkey=misc_feature;gene=metA;inference=protein motif:Pfam:PF04204;locus_tag=Cj1726c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1636407	1637678	.	-	.	ID=gene-Cj1727c;Name=metB;gbkey=Gene;gene=metB;gene_biotype=protein_coding;locus_tag=Cj1727c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1636407	1637678	.	-	0	ID=cds-CAL35821.1;Parent=gene-Cj1727c;Dbxref=EnsemblGenomes-Gn:Cj1727c,EnsemblGenomes-Tr:CAL35821,GOA:Q0P7Q4,InterPro:IPR000277,InterPro:IPR006235,InterPro:IPR015421,InterPro:IPR015422,InterPro:IPR015424,PDB:4OC9,UniProtKB/TrEMBL:Q0P7Q4,NCBI_GP:CAL35821.1;Name=CAL35821.1;Note=Original (2000) note: Cj1727c%2C metY%2C possible O-acetylhomoserine (thiol)-lyase%2C len: 423 aa%3B TR:P94890 (EMBL:Y10744) Leptospira meyeri O-acetylhomoserine sulfhydrylase (metY) (442 aa)%2C fasta scores%3B opt: 1198 z-score: 1372.4 E(): 0%2C 43.0%25 identity in 433 aa overlap%2Cand CYSD_EMENI O-acetylhomoserine (thiol)-lyase (EC 4.2.99.10) (437 aa)%2C fasta scores%3B opt: 1001 z-score: 1147.5 E(): 0%2C 39.4%25 identity in 419 aa overlap. No Hp ortholog. Also similar to Cj1393 metC (30.0%25 identity in 363 aa overlap). Contains Pfam match to entry PF01053 Cys_Met_Meta_PP%2C Gamma-family of PLP-dependent enzymes%3B~Updated (2006) note: No specific characterisation in related bacteria with acceptable identity score. Putative kept within product function. Functional classification - Amino acid biosynthesis - Aspartate family;gbkey=CDS;gene=metB;inference=protein motif:Pfam:PF01053;locus_tag=Cj1727c;product=putative O-acetylhomoserine (thiol)-lyase;protein_id=CAL35821.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1636413	1637663	.	-	.	ID=id-Cj1727c;Note=HMMPfam hit to PF01053%2C Cys/Met metabolism PLP-dependent enzy%2C score 1.3e-159;gbkey=misc_feature;gene=metB;inference=protein motif:Pfam:PF01053;locus_tag=Cj1727c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1637418	1637450	.	-	.	ID=id-Cj1727c-2;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;gene=metB;inference=protein motif:Prosite:PS00013;locus_tag=Cj1727c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1637923	1638078	.	-	.	ID=gene-Cj1728c;Name=Cj1728c;gbkey=Gene;gene_biotype=protein_coding;locus_tag=Cj1728c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1637923	1638078	.	-	0	ID=cds-CAL35822.1;Parent=gene-Cj1728c;Dbxref=EnsemblGenomes-Gn:Cj1728c,EnsemblGenomes-Tr:CAL35822,UniProtKB/TrEMBL:Q0P7Q3,NCBI_GP:CAL35822.1;Name=CAL35822.1;Note=Original (2000) note: Cj1728c%2C small hydrophobic protein%2C len: 51 aa%3B no Hp match. Some similarity to Cj1203c (33.3%25 identity in 42 aa overlap)%3B~Updated (2006) note: One probable transmembrane helix predicted by TMHMM2.0. Functional classification -Unknown;gbkey=CDS;inference=protein motif:TMHMM:2.0;locus_tag=Cj1728c;product=small hydrophobic protein;protein_id=CAL35822.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1637950	1637982	.	-	.	ID=id-Cj1728c;Note=PS00013 Prokaryotic membrane lipoprotein lipid attachment site;gbkey=misc_feature;inference=protein motif:Prosite:PS00013;locus_tag=Cj1728c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1637953	1638021	.	-	.	ID=id-Cj1728c-2;Note=1 probable transmembrane helix predicted for Cj1728c by TMHMM2.0 at aa 20-42;gbkey=misc_feature;inference=protein motif:TMHMM:2.0;locus_tag=Cj1728c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1638104	1640701	.	-	.	ID=gene-Cj1729c;Name=flgE2;gbkey=Gene;gene=flgE2;gene_biotype=protein_coding;locus_tag=Cj1729c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1638104	1640701	.	-	0	ID=cds-CAL35823.1;Parent=gene-Cj1729c;Dbxref=EnsemblGenomes-Gn:Cj1729c,EnsemblGenomes-Tr:CAL35823,GOA:Q0P7Q2,InterPro:IPR001444,InterPro:IPR010810,InterPro:IPR010930,InterPro:IPR011491,InterPro:IPR012835,InterPro:IPR020013,UniProtKB/TrEMBL:Q0P7Q2,NCBI_GP:CAL35823.1;Name=CAL35823.1;Note=Original (2000) note: Cj1729c%2C flgE2%2C probable flagellar hook subunit protein%2C len: 865 aa%3B highly similar to e.g. TR:O86144 (EMBL:AJ002074) C. jejuni flagellar hook subunit protein (862 aa)%2C fasta scores%3B opt: 4848 z-score: 4883.1 E(): 0%2C 86.4%25 identity in 869 aa overlap. 35.5%25 identity to HP0870. Also similar to Cj0043 flgE (25.4%25 identity in 488 aa overlap). Contains Pfam match to entry PF00460 flg_bb_rod%2C Flagella basal body rod proteins%2C and PS00017 ATP/GTP-binding site motif A (P-loop)%3B~Updated (2006) note: Characterised in Campylobacter jejuni. Appropriate motifs present. Functional classification - Surface structures%3B~PMID:9658019%2C PMID:16300911%2C PMID:15150214;gbkey=CDS;gene=flgE2;inference=protein motif:Prosite:PS00017;locus_tag=Cj1729c;product=flagellar hook subunit protein;protein_id=CAL35823.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1638113	1638229	.	-	.	ID=id-Cj1729c;Note=HMMPfam hit to PF06429%2C Domain of unknown function (DUF1078)%2C score 2e-20;gbkey=misc_feature;gene=flgE2;inference=protein motif:Pfam:PF06429;locus_tag=Cj1729c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1638392	1638415	.	-	.	ID=id-Cj1729c-2;Note=PS00017 ATP/GTP-binding site motif A (P-loop);gbkey=misc_feature;gene=flgE2;inference=protein motif:Prosite:PS00017;locus_tag=Cj1729c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1638473	1638859	.	-	.	ID=id-Cj1729c-3;Note=HMMPfam hit to PF07559%2C Flagellar basal body protein FlaE%2C score 5.2e-32;gbkey=misc_feature;gene=flgE2;inference=protein motif:Pfam:PF07559;locus_tag=Cj1729c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1639646	1639813	.	-	.	ID=id-Cj1729c-4;Note=HMMPfam hit to PF07196%2C Flagellin hook IN motif%2Cscore 9.5e-08;gbkey=misc_feature;gene=flgE2;inference=protein motif:Pfam:PF07196;locus_tag=Cj1729c
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1640597	1640689	.	-	.	ID=id-Cj1729c-5;Note=HMMPfam hit to PF00460%2C Flagella basal body rod protein%2C score 8.2e-12;gbkey=misc_feature;gene=flgE2;inference=protein motif:Pfam:PF00460;locus_tag=Cj1729c
gi|15791399|ref|NC_002163.1|	EMBL	gene	1640904	1641386	.	-	.	ID=gene-Cj1731c;Name=ruvC;gbkey=Gene;gene=ruvC;gene_biotype=protein_coding;locus_tag=Cj1731c
gi|15791399|ref|NC_002163.1|	EMBL	CDS	1640904	1641386	.	-	0	ID=cds-CAL35824.1;Parent=gene-Cj1731c;Dbxref=EnsemblGenomes-Gn:Cj1731c,EnsemblGenomes-Tr:CAL35824,GOA:Q9PLU8,InterPro:IPR002176,InterPro:IPR012337,InterPro:IPR020563,NCBI_GP:CAL35824.1;Name=CAL35824.1;Note=Original (2000) note: Cj1731c%2C ruvC%2C probable crossover junction endodeoxyribonuclease%2C len: 160 aa%3B similar to many e.g. RUVC_ECOLI crossover junction endodeoxyribonuclease RUVC (EC 3.1.22.4) (172 aa)%2C fasts ascores%3B opt: 271 z-score: 339.6 E(): 1.4e-11%2C 36.9%25 identity in 149 aa overlap. 65.4%25 identity to HP0877%3B~Updated (2006) note: Pfam domain PF02075 Crossover junction endodeoxyribonuclease RuvC identified within CDS. Further support given to product function. Characterised within Escherichia coli with acceptable identity score. Putative not added to product function. Functional classification - DNA replication%2Crestriction/modification%2C recombination and repair%3B~PMID:1657895%2C PMID:1661673;gbkey=CDS;gene=ruvC;inference=protein motif:Pfam:PF02075;locus_tag=Cj1731c;product=crossover junction endodeoxyribonuclease;protein_id=CAL35824.1;transl_table=11
gi|15791399|ref|NC_002163.1|	EMBL	sequence_feature	1640931	1641374	.	-	.	ID=id-Cj1731c;Note=HMMPfam hit to PF02075%2C Crossover junction endodeoxyribonuclease Ruv%2C score 7.9e-66;gbkey=misc_feature;gene=ruvC;inference=protein motif:Pfam:PF02075;locus_tag=Cj1731c