Nov 8, 2017
ENH: Update elastix

@kaspermarstal kaspermarstal released this Nov 22, 2016 · 677 commits to master since this release

Assets 2

New

  • Updated SimpleITK to v0.10.0.
  • Better support for using SimpleElastix in other projects. SimpleElastix and SimpleTransformix facade classes were refactored according to the private implementation (pimpl) pattern. This means all elastix headers are compiled into the compilation unit and does not have to be installed on the target system. The result is a more robust build and faster compilation and linking process.
  • SimpleElastix and SimpleTransformix are only compiled for the float pixel type by default. Images are automatically casted back and forth internally. This significantly improves build times and reduces binary size.
  • Elastix was updated to the newest version which includes many improvements and bugfixes; in particular a huge merge of the performance branch.

Changed

  • SimpleTransformix.SetMovingPointSet() changed name to SimpleTransformix.SetFixedPointSet() to accurately reflect its mathematical definition.

@kaspermarstal kaspermarstal released this May 11, 2016 · 1306 commits to master since this release

Assets 2

New

  • Completely rewritten core. Internally, images are now registered using the ITK-style ElastixFilter and TransformixFilter library interfaces developed specifically for SimpleElastix. This brings SimpleElastix on par with the original elastix command line interface by adding:
    • Support for multiple fixed images, multiple moving images, multiple fixed masks and multiple moving masks
    • Support for point set registration and warping of point sets with SimpleTransformix
    • Support for writing the spatial jacobian, deformation field and determinant of the spatial jacobian to disk,
    • Support for initial transforms
  • Completely rewritten test suite covering a larger number of registration algorithms performing more thorough unit testing
  • Add method ExecuteInverse() for automatically obtaining the inverse transformation even for methods without an analytical inverse
  • Add valgrind memcheck utility script
  • Add groupwise affine registration method
  • Add two new groupwise similarity metrics
  • Default parameter maps are now added automatically when SimpleElastix class is instantiated. This means the user does not have to supply a parameter map before starting registration but a simple Elastix(fixedImage, movingImage) call is enough.
  • Add support for 4D images to JoinSeriesImageFilter
  • Add preconfigured SplineKernel parameter map
  • Add checks and better diagnostic messages for many typical errors

Fixed

  • Fixed an issue that prevented transformix from transforming 4D images

Changed

  • Add support for all pixel types by default
  • Compile in Release mode by default
  • SimpleITK.ParameterMapList() changed name to VectorOfParameterMap() to align with SimpleITK naming.
  • SimpleTransformix.SetInputImage() changed name to SimpleTransformix.SetMovingImage() to align with the SimpleElastix.SetMovingImage() method and convey its role more clearly.
  • PrettyPrint() changed name to PrintParameterMap()
  • Updated and improved default parameter maps.
  • Switched to a Github elastix mirror in favor of official elastix SVN reposity due to stability problems.

@kaspermarstal kaspermarstal released this May 3, 2016 · 1431 commits to master since this release

Assets 2

New

  • Add SimpleITK support for elastix and transformix
  • Add SimpleITK support for 4D images