adding v2.13.0

Makeconf.in

@@ -11,7 +11,6 @@ ACLOCAL = @ACLOCAL@
 AUTOCONF = @AUTOCONF@
 AUTOMAKE = @AUTOMAKE@
 AUTOHEADER = @AUTOHEADER@
-AWK = @AWK@
 BLAS_LIBS = @BLAS_LIBS@
 BUILDDIR_IS_SRCDIR = @BUILDDIR_IS_SRCDIR@
 ## next two for future support of cross-compiling, not actually used
@@ -34,6 +33,7 @@ ECHO_N = @ECHO_N@
 ECHO_T = @ECHO_T@
 FFLAGS = @FFLAGS@
 FLIBS = @FLIBS@
+FLIBS_IN_SO = $(FLIBS)
 FPICFLAGS = @FPICFLAGS@
 F77 = @F77@
 GETWD = @GETWD@
@@ -64,18 +64,20 @@ MAIN_LDFLAGS = @MAIN_LDFLAGS@ @WANT_R_SHLIB_FALSE@ @USE_EXPORTFILES_TRUE@ -Wl,-b
 MAIN_LINK = $(MAIN_LD) $(MAIN_LDFLAGS) $(LDFLAGS)
 ## need this for bootstrapping
 MKINSTALLDIRS = @R_SHELL@ $(top_srcdir)/src/scripts/mkinstalldirs.in
-PERL = @PERL@
+NOTANGLE = @NOTANGLE@
 OBJC = @OBJC@
 OBJCFLAGS = @OBJCFLAGS@
 R_ARCH = @R_ARCH@
 R_FRAMEWORK_DIR = $(prefix)/R.framework
 R_GZIPCMD = @R_GZIPCMD@
 ## needed for AIX only
 @USE_EXPORTFILES_TRUE@ R_HOME = $(top_builddir)
+R_OPENMP_CFLAGS = @R_OPENMP_CFLAGS@
+R_OPENMP_FFLAGS = @R_OPENMP_FFLAGS@
 R_OSTYPE = @R_OSTYPE@
 R_PKGS = $(R_PKGS_BASE) @USE_RECOMMENDED_PACKAGES_TRUE@ $(R_PKGS_RECOMMENDED)
 R_PLATFORM = @R_PLATFORM@
-R_XTRA_CFLAGS = @R_XTRA_CFLAGS@
+R_XTRA_CFLAGS = @R_XTRA_CFLAGS@ 
 R_XTRA_CPPFLAGS = @R_XTRA_CPPFLAGS@ -I. -I$(top_builddir)/src/include -I$(top_srcdir)/src/include
 R_XTRA_FFLAGS = @R_XTRA_FFLAGS@
 R_XTRA_LIBS = @R_XTRA_LIBS@
@@ -92,20 +94,19 @@ SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS)
 STRIP_LIBS = @striplib@
 STRIP_STATIC_LIBS = @stripstaticlib@
 TAR = @TAR@
-TR = @TR@
 USE_NLS = @USE_NLS@
 X_CFLAGS = @X_CFLAGS@
 X_LIBS = @X_LIBS@
 X_PRE_LIBS = @X_PRE_LIBS@
 X_EXTRA_LIBS = @X_EXTRA_LIBS@
 YACC = @YACC@
 
-ALL_CFLAGS = $(R_XTRA_CFLAGS) $(MAIN_CFLAGS) $(CFLAGS)
+ALL_CFLAGS = $(R_XTRA_CFLAGS) $(R_OPENMP_CFLAGS) $(MAIN_CFLAGS) $(CFLAGS)
 ALL_CPPFLAGS = $(R_XTRA_CPPFLAGS) $(CPPFLAGS) $(DEFS)
-ALL_FFLAGS = $(R_XTRA_FFLAGS) $(MAIN_FFLAGS) $(FFLAGS)
+ALL_FFLAGS = $(R_XTRA_FFLAGS) $(R_OPENMP_FFLAGS) $(MAIN_FFLAGS) $(FFLAGS)
 ALL_OBJCFLAGS = $(R_XTRA_OBJCFLAGS) $(MAIN_OBJCFLAGS) $(OBJCFLAGS)
-ALL_CFLAGS_LO = $(R_XTRA_CFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(CFLAGS)
-ALL_FFLAGS_LO = $(R_XTRA_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(FFLAGS)
+ALL_CFLAGS_LO = $(R_XTRA_CFLAGS) $(R_OPENMP_CFLAGS) $(CPICFLAGS) $(SHLIB_CFLAGS) $(CFLAGS)
+ALL_FFLAGS_LO = $(R_XTRA_FFLAGS) $(R_OPENMP_FFLAGS) $(FPICFLAGS) $(SHLIB_FFLAGS) $(FFLAGS)
 
 .SUFFIXES:
 .SUFFIXES: .c .f .m .d .o

Makefile.in

@@ -189,8 +189,8 @@ distdir: $(DISTFILES) vignettes
 	      | (cd $(distdir); $(TAR) -x -f -)) \
 	    || exit 1; \
 	done
-	@cp library/grid/doc/*.pdf library/grid/doc/index.html \
-	  $(distdir)/src/library/grid/inst/doc
+	@cp library/grid/doc/*.pdf $(distdir)/src/library/grid/inst/doc
+	@cp library/utils/doc/*.pdf $(distdir)/src/library/utils/inst/doc
 	@(cd $(distdir); tools/link-recommended)
 
 dvi info pdf:
@@ -214,5 +214,23 @@ check check-devel check-all check-recommended:
 reset-recommended:
 	@(cd src/library/Recommended && $(MAKE) clean)
 
+## This is a temporary target -- we'll do a better job soon
+bytecode: all
+	@if test ! -e $(top_builddir)/library/compiler; \
+	    then $(ECHO) "install the compiler first"; exit 1; fi
+	    exit
+	@for pkg in $(R_PKGS_BASE); do \
+	    $(ECHO) compiling code in package \"$${pkg}\"; \
+            touch $(top_builddir)/src/library/$${pkg}/all.R; \
+            (cd $(top_builddir)/src/library/$${pkg}; \
+	     R_COMPILE_PKGS=1 R_COMPILER_SUPPRESS_ALL=1 $(MAKE)) \
+	done
+	@for pkg in $(R_PKGS_RECOMMENDED); do \
+	    $(ECHO) compiling code in package \"$${pkg}\"; \
+	    R_COMPILE_PKGS=1 R_COMPILER_SUPPRESS_ALL=1 \
+	    $(top_builddir)/bin/R CMD INSTALL \
+	        -l $(top_builddir)/library \
+		$(srcdir)/src/library/Recommended/$${pkg}.tgz; \
+	done
 
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