diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 7e017dcefa..88a85a6fb9 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
 - repo: https://github.com/ambv/black
-  rev: 21.6b0
+  rev: 22.1.0
   hooks:
   - id: black
     language_version: python3
diff --git a/poetry.lock b/poetry.lock
index e173ff783c..d0e0422145 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,6 +1,6 @@
 [[package]]
 name = "addict"
-version = "2.2.1"
+version = "2.4.0"
 description = "Addict is a dictionary whose items can be set using both attribute and item syntax."
 category = "main"
 optional = true
@@ -90,17 +90,17 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "attrs"
-version = "21.2.0"
+version = "21.4.0"
 description = "Classes Without Boilerplate"
 category = "main"
 optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
 [package.extras]
-dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit"]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"]
 docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
-tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface"]
-tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
+tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"]
 
 [[package]]
 name = "babel"
@@ -123,30 +123,25 @@ python-versions = "*"
 
 [[package]]
 name = "black"
-version = "21.9b0"
+version = "22.1.0"
 description = "The uncompromising code formatter."
 category = "main"
 optional = true
 python-versions = ">=3.6.2"
 
 [package.dependencies]
-click = ">=7.1.2"
+click = ">=8.0.0"
 mypy-extensions = ">=0.4.3"
-pathspec = ">=0.9.0,<1"
+pathspec = ">=0.9.0"
 platformdirs = ">=2"
-regex = ">=2020.1.8"
-tomli = ">=0.2.6,<2.0.0"
-typed-ast = {version = ">=1.4.2", markers = "python_version < \"3.8\""}
-typing-extensions = [
-    {version = ">=3.10.0.0", markers = "python_version < \"3.10\""},
-    {version = "!=3.10.0.1", markers = "python_version >= \"3.10\""},
-]
+tomli = ">=1.1.0"
+typed-ast = {version = ">=1.4.2", markers = "python_version < \"3.8\" and implementation_name == \"cpython\""}
+typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}
 
 [package.extras]
 colorama = ["colorama (>=0.4.3)"]
-d = ["aiohttp (>=3.6.0)", "aiohttp-cors (>=0.4.0)"]
+d = ["aiohttp (>=3.7.4)"]
 jupyter = ["ipython (>=7.8.0)", "tokenize-rt (>=3.2.0)"]
-python2 = ["typed-ast (>=1.4.2)"]
 uvloop = ["uvloop (>=0.15.2)"]
 
 [[package]]
@@ -320,7 +315,7 @@ test = ["nose", "nose-cov", "coverage", "mock", "circus-web", "gevent", "papa",
 
 [[package]]
 name = "click"
-version = "8.0.1"
+version = "8.0.3"
 description = "Composable command line interface toolkit"
 category = "main"
 optional = false
@@ -394,11 +389,14 @@ test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"]
 
 [[package]]
 name = "coverage"
-version = "6.1.2"
+version = "6.3.1"
 description = "Code coverage measurement for Python"
 category = "main"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.7"
+
+[package.dependencies]
+tomli = {version = "*", optional = true, markers = "extra == \"toml\""}
 
 [package.extras]
 toml = ["tomli"]
@@ -416,7 +414,7 @@ python-dateutil = "*"
 
 [[package]]
 name = "cryptography"
-version = "35.0.0"
+version = "36.0.1"
 description = "cryptography is a package which provides cryptographic recipes and primitives to Python developers."
 category = "main"
 optional = false
@@ -427,7 +425,7 @@ cffi = ">=1.12"
 
 [package.extras]
 docs = ["sphinx (>=1.6.5,!=1.8.0,!=3.1.0,!=3.1.1)", "sphinx-rtd-theme"]
-docstest = ["doc8", "pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"]
+docstest = ["pyenchant (>=1.6.11)", "twine (>=1.12.0)", "sphinxcontrib-spelling (>=4.0.1)"]
 pep8test = ["black", "flake8", "flake8-import-order", "pep8-naming"]
 sdist = ["setuptools_rust (>=0.11.4)"]
 ssh = ["bcrypt (>=3.1.5)"]
@@ -464,11 +462,11 @@ pretty = ["cwlformat"]
 
 [[package]]
 name = "cwltool"
-version = "3.1.20210922203925"
+version = "3.1.20220210171524"
 description = "Common workflow language reference implementation"
 category = "main"
 optional = false
-python-versions = ">=3.6, <4"
+python-versions = ">=3.7, <4"
 
 [package.dependencies]
 argcomplete = "*"
@@ -478,10 +476,11 @@ mypy-extensions = "*"
 prov = "1.5.1"
 psutil = ">=5.6.6"
 pydot = ">=1.4.1"
-rdflib = ">=4.2.2,<6.1.0"
+pyparsing = "!=3.0.2"
+rdflib = ">=4.2.2,<6.2.0"
 requests = ">=2.6.1"
-"ruamel.yaml" = ">=0.15,<0.17.17"
-schema-salad = ">=8.2.20210914115719,<9"
+"ruamel.yaml" = ">=0.15,<0.17.21"
+schema-salad = ">=8.2.20211104054942,<9"
 shellescape = ">=3.4.1,<3.9"
 typing-extensions = "*"
 
@@ -490,11 +489,25 @@ deps = ["galaxy-tool-util (>=21.1.0)"]
 
 [[package]]
 name = "deepmerge"
-version = "0.3.0"
+version = "1.0.1"
 description = "a toolset to deeply merge python dictionaries."
 category = "main"
 optional = false
-python-versions = ">=3"
+python-versions = "*"
+
+[[package]]
+name = "deprecated"
+version = "1.2.13"
+description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
+category = "main"
+optional = true
+python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
+
+[package.dependencies]
+wrapt = ">=1.10,<2"
+
+[package.extras]
+dev = ["tox", "bump2version (<1)", "sphinx (<2)", "importlib-metadata (<3)", "importlib-resources (<4)", "configparser (<5)", "sphinxcontrib-websupport (<2)", "zipp (<2)", "PyTest (<5)", "PyTest-Cov (<2.6)", "pytest", "pytest-cov"]
 
 [[package]]
 name = "dill"
@@ -509,21 +522,20 @@ graph = ["objgraph (>=1.7.2)"]
 
 [[package]]
 name = "docker"
-version = "4.3.1"
+version = "5.0.3"
 description = "A Python library for the Docker Engine API."
 category = "main"
 optional = true
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.6"
 
 [package.dependencies]
 pywin32 = {version = "227", markers = "sys_platform == \"win32\""}
 requests = ">=2.14.2,<2.18.0 || >2.18.0"
-six = ">=1.4.0"
 websocket-client = ">=0.32.0"
 
 [package.extras]
 ssh = ["paramiko (>=2.4.2)"]
-tls = ["pyOpenSSL (>=17.5.0)", "cryptography (>=1.3.4)", "idna (>=2.0.0)"]
+tls = ["pyOpenSSL (>=17.5.0)", "cryptography (>=3.4.7)", "idna (>=2.0.0)"]
 
 [[package]]
 name = "docutils"
@@ -583,7 +595,7 @@ testing = ["pre-commit"]
 
 [[package]]
 name = "fakeredis"
-version = "1.6.1"
+version = "1.7.0"
 description = "Fake implementation of redis API for testing purposes."
 category = "main"
 optional = true
@@ -591,7 +603,7 @@ python-versions = ">=3.5"
 
 [package.dependencies]
 packaging = "*"
-redis = "<3.6.0"
+redis = "<4.1.0"
 six = ">=1.12"
 sortedcontainers = "*"
 
@@ -601,11 +613,11 @@ lua = ["lupa"]
 
 [[package]]
 name = "filelock"
-version = "3.3.2"
+version = "3.4.2"
 description = "A platform independent file lock."
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.extras]
 docs = ["furo (>=2021.8.17b43)", "sphinx (>=4.1)", "sphinx-autodoc-typehints (>=1.12)"]
@@ -690,6 +702,14 @@ category = "main"
 optional = false
 python-versions = ">=3.6"
 
+[[package]]
+name = "future"
+version = "0.18.2"
+description = "Clean single-source support for Python 3 and 2"
+category = "main"
+optional = true
+python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
+
 [[package]]
 name = "gitdb"
 version = "4.0.9"
@@ -703,7 +723,7 @@ smmap = ">=3.0.1,<6"
 
 [[package]]
 name = "gitpython"
-version = "3.1.24"
+version = "3.1.26"
 description = "GitPython is a python library used to interact with Git repositories"
 category = "main"
 optional = false
@@ -711,7 +731,7 @@ python-versions = ">=3.7"
 
 [package.dependencies]
 gitdb = ">=4.0.1,<5"
-typing-extensions = {version = ">=3.7.4.3", markers = "python_version < \"3.10\""}
+typing-extensions = {version = ">=3.7.4.3", markers = "python_version < \"3.8\""}
 
 [[package]]
 name = "grandalf"
@@ -755,12 +775,15 @@ pyreadline3 = {version = "*", markers = "sys_platform == \"win32\" and python_ve
 
 [[package]]
 name = "humanize"
-version = "3.11.0"
+version = "3.14.0"
 description = "Python humanize utilities"
 category = "main"
 optional = false
 python-versions = ">=3.6"
 
+[package.dependencies]
+importlib-metadata = {version = "*", markers = "python_version < \"3.8\""}
+
 [package.extras]
 tests = ["freezegun", "pytest", "pytest-cov"]
 
@@ -782,11 +805,11 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "importlib-metadata"
-version = "4.8.3"
+version = "4.11.0"
 description = "Read metadata from Python packages"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 typing-extensions = {version = ">=3.6.4", markers = "python_version < \"3.8\""}
@@ -795,7 +818,7 @@ zipp = ">=0.5"
 [package.extras]
 docs = ["sphinx", "jaraco.packaging (>=8.2)", "rst.linker (>=1.9)"]
 perf = ["ipython"]
-testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pep517", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"]
+testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.0.1)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy", "importlib-resources (>=1.3)"]
 
 [[package]]
 name = "importlib-resources"
@@ -841,7 +864,7 @@ six = "*"
 
 [[package]]
 name = "isort"
-version = "5.9.3"
+version = "5.10.1"
 description = "A Python utility / library to sort Python imports."
 category = "main"
 optional = true
@@ -863,7 +886,7 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "jinja2"
-version = "3.0.1"
+version = "3.0.3"
 description = "A very fast and expressive template engine."
 category = "main"
 optional = false
@@ -926,16 +949,16 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "marshmallow"
-version = "3.13.0"
+version = "3.14.1"
 description = "A lightweight library for converting complex datatypes to and from native Python datatypes."
 category = "main"
 optional = false
-python-versions = ">=3.5"
+python-versions = ">=3.6"
 
 [package.extras]
-dev = ["pytest", "pytz", "simplejson", "mypy (==0.910)", "flake8 (==3.9.2)", "flake8-bugbear (==21.4.3)", "pre-commit (>=2.4,<3.0)", "tox"]
-docs = ["sphinx (==4.1.1)", "sphinx-issues (==1.2.0)", "alabaster (==0.7.12)", "sphinx-version-warning (==1.1.2)", "autodocsumm (==0.2.6)"]
-lint = ["mypy (==0.910)", "flake8 (==3.9.2)", "flake8-bugbear (==21.4.3)", "pre-commit (>=2.4,<3.0)"]
+dev = ["pytest", "pytz", "simplejson", "mypy (==0.910)", "flake8 (==4.0.1)", "flake8-bugbear (==21.9.2)", "pre-commit (>=2.4,<3.0)", "tox"]
+docs = ["sphinx (==4.3.0)", "sphinx-issues (==1.2.0)", "alabaster (==0.7.12)", "sphinx-version-warning (==1.1.2)", "autodocsumm (==0.2.7)"]
+lint = ["mypy (==0.910)", "flake8 (==4.0.1)", "flake8-bugbear (==21.9.2)", "pre-commit (>=2.4,<3.0)"]
 tests = ["pytest", "pytz", "simplejson"]
 
 [[package]]
@@ -1015,14 +1038,14 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "owlrl"
-version = "5.2.3"
+version = "6.0.2"
 description = "OWL-RL and RDFS based RDF Closure inferencing for Python"
 category = "main"
 optional = false
 python-versions = "*"
 
 [package.dependencies]
-rdflib = ">=5.0.0"
+rdflib = ">=6.0.2"
 
 [[package]]
 name = "packaging"
@@ -1109,7 +1132,7 @@ python-versions = ">=3.7"
 
 [[package]]
 name = "platformdirs"
-version = "2.4.1"
+version = "2.5.0"
 description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
 category = "main"
 optional = true
@@ -1205,7 +1228,7 @@ dot = ["pydot (>=1.2.0)"]
 
 [[package]]
 name = "psutil"
-version = "5.8.0"
+version = "5.9.0"
 description = "Cross-platform lib for process and system monitoring in Python."
 category = "main"
 optional = false
@@ -1238,6 +1261,20 @@ category = "main"
 optional = true
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
 
+[[package]]
+name = "py-tes"
+version = "0.4.2"
+description = "Library for communicating with the GA4GH Task Execution API"
+category = "main"
+optional = true
+python-versions = ">=2.7, <4"
+
+[package.dependencies]
+attrs = ">=17.4.0"
+future = ">=0.16.0"
+python-dateutil = ">=2.6.1"
+requests = ">=2.18.1"
+
 [[package]]
 name = "pyasn1"
 version = "0.4.8"
@@ -1313,15 +1350,15 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "pyjwt"
-version = "2.1.0"
+version = "2.3.0"
 description = "JSON Web Token implementation in Python"
 category = "main"
 optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-crypto = ["cryptography (>=3.3.1,<4.0.0)"]
-dev = ["sphinx", "sphinx-rtd-theme", "zope.interface", "cryptography (>=3.3.1,<4.0.0)", "pytest (>=6.0.0,<7.0.0)", "coverage[toml] (==5.0.4)", "mypy", "pre-commit"]
+crypto = ["cryptography (>=3.3.1)"]
+dev = ["sphinx", "sphinx-rtd-theme", "zope.interface", "cryptography (>=3.3.1)", "pytest (>=6.0.0,<7.0.0)", "coverage[toml] (==5.0.4)", "mypy", "pre-commit"]
 docs = ["sphinx", "sphinx-rtd-theme", "zope.interface"]
 tests = ["pytest (>=6.0.0,<7.0.0)", "coverage[toml] (==5.0.4)"]
 
@@ -1346,15 +1383,14 @@ requests = ["requests"]
 
 [[package]]
 name = "pyopenssl"
-version = "20.0.1"
+version = "22.0.0"
 description = "Python wrapper module around the OpenSSL library"
 category = "main"
 optional = false
-python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"
+python-versions = ">=3.6"
 
 [package.dependencies]
-cryptography = ">=3.2"
-six = ">=1.5.2"
+cryptography = ">=35.0"
 
 [package.extras]
 docs = ["sphinx", "sphinx-rtd-theme"]
@@ -1389,16 +1425,16 @@ python-versions = "*"
 
 [[package]]
 name = "pyshacl"
-version = "0.17.2"
+version = "0.18.1"
 description = "Python SHACL Validator"
 category = "main"
 optional = false
 python-versions = ">=3.7.0,<4.0.0"
 
 [package.dependencies]
-owlrl = ">=5.2.3,<6.0.0"
+owlrl = ">=6.0.2,<7"
 prettytable = ">=2.2.1,<3.0.0"
-rdflib = ">=6.0.0,<7"
+rdflib = ">=6.1.1,<8"
 
 [package.extras]
 dev-lint = ["black (==21.9b0)", "flake8 (>=3.8.0,<4.0.0)", "isort (>=5.7.0,<6.0.0)"]
@@ -1419,7 +1455,7 @@ wcwidth = "*"
 
 [[package]]
 name = "pytest"
-version = "6.2.5"
+version = "7.0.0"
 description = "pytest: simple powerful testing with Python"
 category = "main"
 optional = true
@@ -1434,10 +1470,10 @@ iniconfig = "*"
 packaging = "*"
 pluggy = ">=0.12,<2.0"
 py = ">=1.8.2"
-toml = "*"
+tomli = ">=1.0.0"
 
 [package.extras]
-testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"]
+testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"]
 
 [[package]]
 name = "pytest-black"
@@ -1466,16 +1502,15 @@ pytest = ">=2.2"
 
 [[package]]
 name = "pytest-cov"
-version = "2.12.1"
+version = "3.0.0"
 description = "Pytest plugin for measuring coverage."
 category = "main"
 optional = true
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.6"
 
 [package.dependencies]
-coverage = ">=5.2.1"
+coverage = {version = ">=5.2.1", extras = ["toml"]}
 pytest = ">=4.6"
-toml = "*"
 
 [package.extras]
 testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"]
@@ -1506,11 +1541,11 @@ pytest = ">=3.10"
 
 [[package]]
 name = "pytest-mock"
-version = "3.6.1"
+version = "3.7.0"
 description = "Thin-wrapper around the mock package for easier use with pytest"
 category = "main"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
 pytest = ">=5.0"
@@ -1546,7 +1581,7 @@ vcrpy = ">=2.0.1"
 
 [[package]]
 name = "pytest-timeout"
-version = "2.0.1"
+version = "2.1.0"
 description = "pytest plugin to abort hanging tests"
 category = "main"
 optional = true
@@ -1557,7 +1592,7 @@ pytest = ">=5.0.0"
 
 [[package]]
 name = "pytest-xdist"
-version = "2.4.0"
+version = "2.5.0"
 description = "pytest xdist plugin for distributed testing and loop-on-failing modes"
 category = "main"
 optional = true
@@ -1565,7 +1600,7 @@ python-versions = ">=3.6"
 
 [package.dependencies]
 execnet = ">=1.1"
-pytest = ">=6.0.0"
+pytest = ">=6.2.0"
 pytest-forked = "*"
 
 [package.extras]
@@ -1586,7 +1621,7 @@ six = ">=1.5"
 
 [[package]]
 name = "python-dotenv"
-version = "0.19.0"
+version = "0.19.2"
 description = "Read key-value pairs from a .env file and set them as environment variables"
 category = "main"
 optional = true
@@ -1605,18 +1640,18 @@ python-versions = "*"
 
 [[package]]
 name = "python-gitlab"
-version = "2.10.1"
+version = "3.1.1"
 description = "Interact with GitLab API"
 category = "main"
 optional = false
-python-versions = ">=3.6.0"
+python-versions = ">=3.7.0"
 
 [package.dependencies]
 requests = ">=2.25.0"
 requests-toolbelt = ">=0.9.1"
 
 [package.extras]
-autocompletion = ["argcomplete (>=1.10.0,<2)"]
+autocompletion = ["argcomplete (>=1.10.0,<3)"]
 yaml = ["PyYaml (>=5.2)"]
 
 [[package]]
@@ -1637,11 +1672,11 @@ python-versions = "*"
 
 [[package]]
 name = "pyyaml"
-version = "5.4.1"
+version = "6.0"
 description = "YAML parser and emitter for Python"
 category = "main"
 optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "pyzmq"
@@ -1657,39 +1692,35 @@ py = {version = "*", markers = "implementation_name == \"pypy\""}
 
 [[package]]
 name = "rdflib"
-version = "6.0.2"
+version = "6.1.1"
 description = "RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information."
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.dependencies]
+importlib-metadata = {version = "*", markers = "python_version < \"3.8.0\""}
 isodate = "*"
 pyparsing = "*"
 
 [package.extras]
 docs = ["sphinx (<5)", "sphinxcontrib-apidoc"]
 html = ["html5lib"]
-tests = ["html5lib", "networkx", "nose (==1.3.7)", "nose-timer", "coverage", "black (==21.6b0)", "flake8", "doctest-ignore-unicode (==0.1.2)"]
+tests = ["berkeleydb", "html5lib", "networkx", "pytest", "pytest-cov", "pytest-subtests"]
 
 [[package]]
 name = "redis"
-version = "3.5.3"
-description = "Python client for Redis key-value store"
+version = "4.0.2"
+description = "Python client for Redis database and key-value store"
 category = "main"
 optional = true
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.6"
 
-[package.extras]
-hiredis = ["hiredis (>=0.1.3)"]
+[package.dependencies]
+deprecated = "*"
 
-[[package]]
-name = "regex"
-version = "2022.1.18"
-description = "Alternative regular expression module, to replace re."
-category = "main"
-optional = true
-python-versions = "*"
+[package.extras]
+hiredis = ["hiredis (>=1.0.0)"]
 
 [[package]]
 name = "renku-sphinx-theme"
@@ -1711,7 +1742,7 @@ tests = ["check-manifest (>=0.25)", "isort (>=4.2.2)", "pydocstyle (>=1.0.0)"]
 
 [[package]]
 name = "requests"
-version = "2.26.0"
+version = "2.27.1"
 description = "Python HTTP for Humans."
 category = "main"
 optional = false
@@ -1740,23 +1771,22 @@ requests = ">=2.0.1,<3.0.0"
 
 [[package]]
 name = "responses"
-version = "0.14.0"
+version = "0.18.0"
 description = "A utility library for mocking out the `requests` Python library."
 category = "main"
 optional = true
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.7"
 
 [package.dependencies]
-requests = ">=2.0"
-six = "*"
+requests = ">=2.0,<3.0"
 urllib3 = ">=1.25.10"
 
 [package.extras]
-tests = ["coverage (>=3.7.1,<6.0.0)", "pytest-cov", "pytest-localserver", "flake8", "types-mock", "types-requests", "types-six", "pytest (>=4.6,<5.0)", "pytest (>=4.6)", "mypy"]
+tests = ["pytest (>=4.6)", "coverage (>=6.0.0)", "pytest-cov", "pytest-localserver", "flake8", "types-mock", "types-requests", "mypy"]
 
 [[package]]
 name = "rich"
-version = "10.12.0"
+version = "11.2.0"
 description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
 category = "main"
 optional = false
@@ -1766,14 +1796,14 @@ python-versions = ">=3.6.2,<4.0.0"
 colorama = ">=0.4.0,<0.5.0"
 commonmark = ">=0.9.0,<0.10.0"
 pygments = ">=2.6.0,<3.0.0"
-typing-extensions = {version = ">=3.7.4,<4.0.0", markers = "python_version < \"3.8\""}
+typing-extensions = {version = ">=3.7.4,<5.0", markers = "python_version < \"3.8\""}
 
 [package.extras]
 jupyter = ["ipywidgets (>=7.5.1,<8.0.0)"]
 
 [[package]]
 name = "rq"
-version = "1.10.0"
+version = "1.10.1"
 description = "RQ is a simple, lightweight, library for creating background jobs, and processing them."
 category = "main"
 optional = true
@@ -1798,7 +1828,7 @@ rq = ">=0.13"
 
 [[package]]
 name = "ruamel.yaml"
-version = "0.17.16"
+version = "0.17.17"
 description = "ruamel.yaml is a YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order"
 category = "main"
 optional = false
@@ -1841,7 +1871,7 @@ pycodegen = ["black"]
 
 [[package]]
 name = "sentry-sdk"
-version = "1.4.3"
+version = "1.5.5"
 description = "Python client for Sentry (https://sentry.io)"
 category = "main"
 optional = true
@@ -1865,6 +1895,7 @@ flask = ["flask (>=0.11)", "blinker (>=1.1)"]
 httpx = ["httpx (>=0.16.0)"]
 pure_eval = ["pure-eval", "executing", "asttokens"]
 pyspark = ["pyspark (>=2.4.4)"]
+quart = ["quart (>=0.16.1)", "blinker (>=1.1)"]
 rq = ["rq (>=0.6)"]
 sanic = ["sanic (>=0.8)"]
 sqlalchemy = ["sqlalchemy (>=1.2)"]
@@ -2082,33 +2113,34 @@ widechars = ["wcwidth"]
 
 [[package]]
 name = "toil"
-version = "5.5.0"
+version = "5.6.0"
 description = "Pipeline management software for clusters."
 category = "main"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [package.dependencies]
-addict = ">=2.2.1,<2.3"
+addict = ">=2.2.1,<2.5"
 dill = ">=0.3.2,<0.4"
-docker = "4.3.1"
+docker = ">=3.7.2,<6"
 enlighten = ">=1.5.2,<2"
 psutil = ">=3.0.1,<6"
+py-tes = ">=0.4.2,<1"
 python-dateutil = "*"
 pytz = ">=2012"
-pyyaml = ">=5,<6"
 requests = ">=2,<3"
 typing-extensions = {version = "*", markers = "python_version < \"3.8\""}
 
 [package.extras]
-all = ["boto (>=2.48.0,<3)", "boto3 (>=1.17,<2)", "boto3-stubs[s3] (>=1.17,<2)", "futures (>=3.1.1,<4)", "pycryptodome (==3.5.1)", "cwltool (==3.1.20210922203925)", "galaxy-tool-util", "pynacl (==1.3.0)", "gcs-oauth2-boto-plugin (==1.14)", "apache-libcloud (==2.2.1)", "google-cloud-storage (==1.6.0)", "kubernetes (>=12.0.1,<13)", "idna (>=2)", "pymesos (==0.3.15)", "psutil (>=3.0.1,<6)", "wdlparse (==0.1.0)"]
-aws = ["boto (>=2.48.0,<3)", "boto3 (>=1.17,<2)", "boto3-stubs[s3] (>=1.17,<2)", "futures (>=3.1.1,<4)", "pycryptodome (==3.5.1)"]
-cwl = ["cwltool (==3.1.20210922203925)", "galaxy-tool-util"]
-encryption = ["pynacl (==1.3.0)"]
-google = ["gcs-oauth2-boto-plugin (==1.14)", "apache-libcloud (==2.2.1)", "google-cloud-storage (==1.6.0)"]
-htcondor = ["htcondor (>=8.6.0)"]
-kubernetes = ["kubernetes (>=12.0.1,<13)", "idna (>=2)"]
-mesos = ["pymesos (==0.3.15)", "psutil (>=3.0.1,<6)"]
+all = ["boto (>=2.48.0,<3)", "boto3 (>=1.17,<2)", "boto3-stubs[s3] (>=1.17,<2)", "futures (>=3.1.1,<4)", "cwltool (==3.1.20211107152837)", "galaxy-tool-util", "ruamel.yaml (==0.17.16)", "ruamel.yaml.clib (>=0.2.6)", "pynacl (>=1.4.0,<2)", "apache-libcloud (>=2.2.1,<3)", "google-cloud-storage (==1.6.0)", "kubernetes (>=12.0.1,<22)", "idna (>=2)", "pymesos (>=0.3.15,<0.4)", "wdlparse (==0.1.0)", "connexion[swagger-ui] (>=2.5.1,<3)", "flask-cors (==3.0.10)", "gunicorn (==20.1.0)", "celery (>=5.1.0,<6)"]
+aws = ["boto (>=2.48.0,<3)", "boto3 (>=1.17,<2)", "boto3-stubs[s3] (>=1.17,<2)", "futures (>=3.1.1,<4)"]
+cwl = ["cwltool (==3.1.20211107152837)", "galaxy-tool-util", "ruamel.yaml (==0.17.16)", "ruamel.yaml.clib (>=0.2.6)"]
+encryption = ["pynacl (>=1.4.0,<2)"]
+google = ["apache-libcloud (>=2.2.1,<3)", "google-cloud-storage (==1.6.0)"]
+htcondor = ["htcondor (>=8.6.0,<9)"]
+kubernetes = ["kubernetes (>=12.0.1,<22)", "idna (>=2)"]
+mesos = ["pymesos (>=0.3.15,<0.4)"]
+server = ["connexion[swagger-ui] (>=2.5.1,<3)", "flask-cors (==3.0.10)", "gunicorn (==20.1.0)", "celery (>=5.1.0,<6)"]
 wdl = ["wdlparse (==0.1.0)"]
 
 [[package]]
@@ -2121,11 +2153,11 @@ python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*"
 
 [[package]]
 name = "tomli"
-version = "1.2.3"
+version = "2.0.1"
 description = "A lil' TOML parser"
 category = "main"
 optional = true
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "tornado"
@@ -2177,11 +2209,11 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "typing-extensions"
-version = "3.10.0.2"
-description = "Backported and Experimental Type Hints for Python 3.5+"
+version = "4.0.1"
+description = "Backported and Experimental Type Hints for Python 3.6+"
 category = "main"
 optional = false
-python-versions = "*"
+python-versions = ">=3.6"
 
 [[package]]
 name = "urllib3"
@@ -2212,7 +2244,7 @@ yarl = {version = "*", markers = "python_version >= \"3.6\""}
 
 [[package]]
 name = "walrus"
-version = "0.8.2"
+version = "0.9.0"
 description = "walrus"
 category = "main"
 optional = true
@@ -2255,7 +2287,7 @@ test = ["websockets"]
 
 [[package]]
 name = "werkzeug"
-version = "2.0.2"
+version = "2.0.3"
 description = "The comprehensive WSGI web application library."
 category = "main"
 optional = false
@@ -2463,7 +2495,7 @@ test = ["zope.testrunner"]
 
 [[package]]
 name = "zstandard"
-version = "0.16.0"
+version = "0.17.0"
 description = "Zstandard bindings for Python"
 category = "main"
 optional = false
@@ -2485,12 +2517,12 @@ toil = ["toil"]
 [metadata]
 lock-version = "1.1"
 python-versions = "^3.7.1"
-content-hash = "46b9d7919902f0de26a0802d849c8604a299e41f132bfd2289ff6a293c1ecf60"
+content-hash = "8efc6f3a90ee424f567049fd681b92330ab64d2b5c67254de8fad0de2e2c6aa3"
 
 [metadata.files]
 addict = [
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-    {file = "addict-2.2.1.tar.gz", hash = "sha256:f22493f056032f50e4931a82444fcba8ef74c8fc994c5d06aa546a1433c2b8b0"},
+    {file = "addict-2.4.0-py3-none-any.whl", hash = "sha256:249bb56bbfd3cdc2a004ea0ff4c2b6ddc84d53bc2194761636eb314d5cfa5dfc"},
+    {file = "addict-2.4.0.tar.gz", hash = "sha256:b3b2210e0e067a281f5646c8c5db92e99b7231ea8b0eb5f74dbdf9e259d4e494"},
 ]
 alabaster = [
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@@ -2521,8 +2553,8 @@ atomicwrites = [
     {file = "atomicwrites-1.4.0.tar.gz", hash = "sha256:ae70396ad1a434f9c7046fd2dd196fc04b12f9e91ffb859164193be8b6168a7a"},
 ]
 attrs = [
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-    {file = "attrs-21.2.0.tar.gz", hash = "sha256:ef6aaac3ca6cd92904cdd0d83f629a15f18053ec84e6432106f7a4d04ae4f5fb"},
+    {file = "attrs-21.4.0-py2.py3-none-any.whl", hash = "sha256:2d27e3784d7a565d36ab851fe94887c5eccd6a463168875832a1be79c82828b4"},
+    {file = "attrs-21.4.0.tar.gz", hash = "sha256:626ba8234211db98e869df76230a137c4c40a12d72445c45d5f5b716f076e2fd"},
 ]
 babel = [
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@@ -2533,8 +2565,29 @@ bagit = [
     {file = "bagit-1.8.1.tar.gz", hash = "sha256:37df1330d2e8640c8dee8ab6d0073ac701f0614d25f5252f9e05263409cee60c"},
 ]
 black = [
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-    {file = "black-21.9b0.tar.gz", hash = "sha256:7de4cfc7eb6b710de325712d40125689101d21d25283eed7e9998722cf10eb91"},
+    {file = "black-22.1.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:1297c63b9e1b96a3d0da2d85d11cd9bf8664251fd69ddac068b98dc4f34f73b6"},
+    {file = "black-22.1.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:2ff96450d3ad9ea499fc4c60e425a1439c2120cbbc1ab959ff20f7c76ec7e866"},
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+    {file = "black-22.1.0-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:ccad888050f5393f0d6029deea2a33e5ae371fd182a697313bdbd835d3edaf9c"},
+    {file = "black-22.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:07e5c049442d7ca1a2fc273c79d1aecbbf1bc858f62e8184abe1ad175c4f7cc2"},
+    {file = "black-22.1.0-cp39-cp39-win_amd64.whl", hash = "sha256:373922fc66676133ddc3e754e4509196a8c392fec3f5ca4486673e685a421321"},
+    {file = "black-22.1.0-py3-none-any.whl", hash = "sha256:3524739d76b6b3ed1132422bf9d82123cd1705086723bc3e235ca39fd21c667d"},
+    {file = "black-22.1.0.tar.gz", hash = "sha256:a7c0192d35635f6fc1174be575cb7915e92e5dd629ee79fdaf0dcfa41a80afb5"},
 ]
 blessed = [
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@@ -2680,8 +2733,8 @@ circus = [
     {file = "circus-0.17.1.tar.gz", hash = "sha256:7e15dd1ef94f06e1aa00ac0dabe05b9e312633a7e58fa5e2361459e7f915f4c5"},
 ]
 click = [
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+    {file = "click-8.0.3-py3-none-any.whl", hash = "sha256:353f466495adaeb40b6b5f592f9f91cb22372351c84caeb068132442a4518ef3"},
+    {file = "click-8.0.3.tar.gz", hash = "sha256:410e932b050f5eed773c4cda94de75971c89cdb3155a72a0831139a79e5ecb5b"},
 ]
 click-option-group = [
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@@ -2704,79 +2757,73 @@ commonmark = [
     {file = "commonmark-0.9.1.tar.gz", hash = "sha256:452f9dc859be7f06631ddcb328b6919c67984aca654e5fefb3914d54691aed60"},
 ]
 coverage = [
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diff --git a/pyproject.toml b/pyproject.toml
index a8468bdc1d..7369a381df 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -54,37 +54,37 @@ python = "^3.7.1"
 apispec = { version = "<5.2.0,>=4.0.0", optional = true }
 apispec-webframeworks = { version = "<0.6,>=0.5.2", optional = true }
 appdirs = "<=1.4.4,>=1.4.3"
-attrs = "<21.3.0,>=19.3.0"
-black = { version = "==21.9b0", optional = true }
+attrs = "<21.5.0,>=19.3.0"
+black = { version = "==22.1.0", optional = true }
 calamus = "<0.4,>=0.3.13"
 check-manifest = { version = "<0.48,>=0.37", optional = true }
 circus = { version = "==0.17.1", optional = true }
-click = "<8.0.2,>=8.0"
+click = "<8.0.4,>=8.0"
 click-option-group = "<0.6.0,>=0.5.2"
 click-plugins = "==1.1.1"
-coverage = { version = "<6.2,>=4.5.3", optional = true }
-cryptography = "<35.1,>=3.4.1"
+coverage = { version = "<6.4,>=4.5.3", optional = true }
+cryptography = "<37.0.0,>=3.4.1"
 cwl-utils = ">=0.12"
-cwltool = "==3.1.20210922203925"
-deepmerge = "==0.3.0"
+cwltool = "==3.1.20211107152837"
+deepmerge = "==1.0.1"
 environ-config = "<21.3.0,>=18.2.0"
-fakeredis = { version = "<1.6.2,>=1.4.1", optional = true }
-filelock = "<3.3.3,>=3.0.0"
+fakeredis = { version = "<1.7.1,>=1.4.1", optional = true }
+filelock = "<3.4.3,>=3.0.0"
 flake8 = { version = "<4.0,>=3.8", optional = true }                             #wait for https://github.com/flakehell/flakehell/pull/23 to be merged before bumping
 flakehell = { version = ">=0.9.0,<1.0.*", optional = true }
 flaky = { version = "==3.7.0", optional = true }
 flask = { version = "==2.0.2", optional = true }
 freezegun = { version = "<1.1.1,>=0.3.12", optional = true }
-gitpython = "==3.1.24"
+gitpython = "==3.1.26"
 grandalf = "==0.7"
 gunicorn = { optional = true, version = "*" }
-humanize = "<3.12.0,>=2.5.0"
-importlib-metadata = { version = "<4.9.0,>=4.8.1", python = "<3.8.0" }
+humanize = "<3.15.0,>=3.0.0"
+importlib-metadata = { version = "<4.12.0,>=4.8.1", python = "<3.8.0" }
 importlib-resources = { version = "<5.5.0,>=5.4.0", python = "<3.9.0" }
 inject = "<4.4.0,>=4.3.0"
-isort = { version = "<5.10.0,>=5.3.2", optional = true }
-jinja2 = { version = "<3.0.2,>=2.10.3,>=2.11.3" }
-marshmallow = { version = "==3.13.0", optional = true }
+isort = { version = "<5.10.2,>=5.3.2", optional = true }
+jinja2 = { version = "<3.0.4,>=2.11.3" }
+marshmallow = { version = ">=3.13.0,<3.15.0", optional = true }
 ndg-httpsclient = "==0.5.1"
 networkx = "<2.7,>=2.6.0"
 numpy = ">=1.20.0,<1.22.0"
@@ -95,53 +95,53 @@ pexpect = { version = "<4.9.0,>=4.8.0", optional = true }
 pillow = { version = "<9.1,>=9.0.0", optional = true }
 pluggy = "==1.0.0"
 portalocker = "<2.4,>=2.2.1"
-psutil = "<5.8.1,>=5.4.7"
+psutil = ">=5.4.7,<5.9.1,"
 ptvsd = { version = "<4.4.0,>=4.3.0", optional = true }
 pyasn1 = "<=0.4.8,>=0.4.5"
 pydocstyle = { version = "<6.1.2,>=3.0.0", optional = true }
-pyjwt = "==2.1.0"
+pyjwt = ">=2.1.0,<2.4.0"
 pyld = "==2.0.3"
-pyopenssl = "<20.1.0,>=19.0.0"
-pyshacl = "==0.17.2"
+pyopenssl = ">=19.0.0,<22.1.0"
+pyshacl = ">=0.17.2,<0.18.2"
 pyte = { version = ">=0.8.0<0.9.0", optional = true }
-pytest = { version = "<6.2.6,>=4.0.0", optional = true }
+pytest = { version = ">=4.0.0,<7.0.1", optional = true }
 pytest-black = { version = "<0.3.13,>=0.3.10", optional = true }
 pytest-cache = { version = "==1.0", optional = true }
-pytest-cov = { version = "<2.13.0,>=2.5.1", optional = true }
+pytest-cov = { version = "<3.1.0,>=2.5.1", optional = true }
 pytest-flake8 = { version = "<1.0.8,>=1.0.6", optional = true }
-pytest-mock = { version = "<3.7.0,>=3.2.0", optional = true }
+pytest-mock = { version = "<3.8.0,>=3.2.0", optional = true }
 pytest-pep8 = { version = "==1.0.6", optional = true }
 pytest-recording = { version = "==0.12.0", optional = true }
-pytest-timeout = { version = "==2.0.1", optional = true }
-pytest-xdist = { version = "<2.5.0,>=1.34.0", optional = true }
+pytest-timeout = { version = "==2.1.0", optional = true }
+pytest-xdist = { version = ">=1.34.0,<2.6.0", optional = true }
 python-dateutil = "<2.8.3,>=2.6.1"
-python-dotenv = { version = "==0.19.0", optional = true }
+python-dotenv = { version = ">=0.19.0,<0.20.0", optional = true }
 python-editor = "==1.0.4"
-python-gitlab = ">=2.10.1,<2.11"
+python-gitlab = ">=2.10.1,<3.1.2"
 pyyaml = "<6.1.0,>=5.4"
 rdflib = "<7.0,>=6.0.0"
-redis = { version = "==3.5.3", optional = true }
+redis = { version = ">=3.5.3,<4.1.0", optional = true }
 renku-sphinx-theme = { version = ">=0.2.0", optional = true }
-requests = "<2.27.0,>=2.23.0"
-responses = { version = "<0.14.1,>=0.7.0", optional = true }
-rich = "<10.13.0,>=9.3.0"
-rq = { version = "==1.10.0", optional = true }
+requests = "<2.27.2,>=2.23.0"
+responses = { version = "<0.19.0,>=0.7.0", optional = true }
+rich = "<11.3.0,>=9.3.0"
+rq = { version = "==1.10.1", optional = true }
 rq-scheduler = { version = "==0.11.0", optional = true }
-sentry-sdk = { version = "<1.4.4,>=0.7.4", extras = ["flask"], optional = true }
+sentry-sdk = { version = ">=1.0.0,<1.5.6", extras = ["flask"], optional = true }
 shellingham = "1.4.0"
 sphinxcontrib-spelling = { version = "7.*", optional = true }
 sphinx-rtd-theme = { version = "<1.1,>=0.5.0", optional = true }
 sphinx-tabs = { version = "==3.2.0", optional = true }
 tabulate = "<0.8.10,>=0.7.7"
-toil = { version = "==5.5.0", optional = true }
+toil = { version = "==5.6.0", optional = true }
 tqdm = "<4.62.4,>=4.48.1"
-walrus = { version = "==0.8.2", optional = true }
+walrus = { version = ">=0.8.2,<0.10.0", optional = true }
 wcmatch = "<8.3,>=6.0.0"
-werkzeug = "<2.0.3,>=0.15.5"
+werkzeug = "<2.0.4,>=1.0.0"
 yagup = ">=0.1.1"
 "zc.relation" = "<1.2,>=1.1"
 zodb = "==5.6.0"
-zstandard = "==0.16.0"
+zstandard = ">=0.16.0,<0.18.0"
 
 [tool.poetry.dev-dependencies]
 poetry-lock-package = "^0.4.3"
diff --git a/renku/core/commands/dataset.py b/renku/core/commands/dataset.py
index 6a849c36c7..0510aa5dc2 100644
--- a/renku/core/commands/dataset.py
+++ b/renku/core/commands/dataset.py
@@ -246,7 +246,7 @@ def _add_to_dataset(
     usage = shutil.disk_usage(client.path)
 
     if total_size > usage.free:
-        mb = 2 ** 20
+        mb = 2**20
         message = "Insufficient disk space (required: {:.2f} MB" "/available: {:.2f} MB). ".format(
             total_size / mb, usage.free / mb
         )
@@ -517,7 +517,7 @@ def _import_dataset(
                 if file_.size_in_mb is not None:
                     total_size += file_.size_in_mb
 
-            total_size *= 2 ** 20
+            total_size *= 2**20
 
     except KeyError as e:
         raise ParameterError(f"Could not process '{uri}'.\nUnable to fetch metadata: {e}")
diff --git a/renku/core/commands/view_model/activity_graph.py b/renku/core/commands/view_model/activity_graph.py
index c235784d6a..f0e13f8a33 100644
--- a/renku/core/commands/view_model/activity_graph.py
+++ b/renku/core/commands/view_model/activity_graph.py
@@ -85,8 +85,8 @@ def layout_graph(self, columns):
 
             graph = Graph(nodes.values(), edges)
 
-            shortest_node_width = 2 ** 64
-            shortest_node_height = 2 ** 64
+            shortest_node_width = 2**64
+            shortest_node_height = 2**64
 
             for node in nodes.values():
                 node.view = NodeViewer(node.data[0])
diff --git a/renku/core/commands/view_model/text_canvas.py b/renku/core/commands/view_model/text_canvas.py
index c88acd342e..3cc30e613e 100644
--- a/renku/core/commands/view_model/text_canvas.py
+++ b/renku/core/commands/view_model/text_canvas.py
@@ -247,7 +247,7 @@ def get_coordinates(self, point: Point):
 
     def render(self, color: bool = True, ascii=False):
         """Render contained shapes onto canvas."""
-        extent = (Point(2 ** 64, 2 ** 64), Point(-(2 ** 64), -(2 ** 64)))
+        extent = (Point(2**64, 2**64), Point(-(2**64), -(2**64)))
 
         layers = sorted(self.shapes.keys())
 
diff --git a/renku/core/utils/file_size.py b/renku/core/utils/file_size.py
index b5698f1812..560b0201a7 100644
--- a/renku/core/utils/file_size.py
+++ b/renku/core/utils/file_size.py
@@ -22,24 +22,24 @@
 units = {
     "b": 1,
     "kb": 1000,
-    "mb": 1000 ** 2,
-    "gb": 1000 ** 3,
-    "tb": 1000 ** 4,
-    "m": 1000 ** 2,
-    "g": 1000 ** 3,
-    "t": 1000 ** 4,
-    "p": 1000 ** 5,
-    "e": 1000 ** 6,
-    "z": 1000 ** 7,
-    "y": 1000 ** 8,
+    "mb": 1000**2,
+    "gb": 1000**3,
+    "tb": 1000**4,
+    "m": 1000**2,
+    "g": 1000**3,
+    "t": 1000**4,
+    "p": 1000**5,
+    "e": 1000**6,
+    "z": 1000**7,
+    "y": 1000**8,
     "ki": 1024,
-    "mi": 1024 ** 2,
-    "gi": 1024 ** 3,
-    "ti": 1024 ** 4,
-    "pi": 1024 ** 5,
-    "ei": 1024 ** 6,
-    "zi": 1024 ** 7,
-    "yi": 1024 ** 8,
+    "mi": 1024**2,
+    "gi": 1024**3,
+    "ti": 1024**4,
+    "pi": 1024**5,
+    "ei": 1024**6,
+    "zi": 1024**7,
+    "yi": 1024**8,
 }
 
 
diff --git a/renku/service/jobs/contexts.py b/renku/service/jobs/contexts.py
index 6fe2235f70..8ecd18b0f4 100644
--- a/renku/service/jobs/contexts.py
+++ b/renku/service/jobs/contexts.py
@@ -32,6 +32,6 @@ def enqueue_retry(queue, retry=3):
         try:
             yield WorkerQueues.get(queue)
         except (OSError, IOError, BusyLoadingError):
-            time.sleep(2 ** count)
+            time.sleep(2**count)
             count += 1
         break
diff --git a/tests/core/commands/test_cli.py b/tests/core/commands/test_cli.py
index 5f8279586c..bf53b52887 100644
--- a/tests/core/commands/test_cli.py
+++ b/tests/core/commands/test_cli.py
@@ -691,7 +691,7 @@ def test_lfs_size_limit(isolated_runner, project_init):
 
     large = Path("large")
     with large.open("w") as f:
-        f.write("x" * 1024 ** 2)
+        f.write("x" * 1024**2)
 
     result = runner.invoke(cli, ["dataset", "add", "--create", "my-dataset", str(large)], catch_exceptions=False)
     assert 0 == result.exit_code, format_result_exception(result)
@@ -749,7 +749,7 @@ def test_lfs_ignore(isolated_runner, ignore, path, tracked, project_init):
         filepath.parent.mkdir(parents=True, exist_ok=True)
 
     with filepath.open("w") as f:
-        f.write("x" * 1024 ** 2)
+        f.write("x" * 1024**2)
 
     result = runner.invoke(cli, ["dataset", "add", "my-dataset", str(filepath)], catch_exceptions=False)
     assert 0 == result.exit_code, format_result_exception(result)