Assets 3

SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments.

New features include:

  • Support for combinatorial design
  • SBOL Visual 2 compliant glyphs
  • More extensive support for SynBioHub (private accounts, search, upload)
  • Web of Registries integration
  • Improved provenance support
  • Overlay glyphs/notifications
  • Bug fixes
  • Numerous other improvements

To run, download and double click on the SBOLDesigner-3.0.jar file above. To see detailed error messages and logging, run SBOLDesigner using a terminal by running "java -jar SBOLDesigner-3.0.jar" in the same directory as the file. Make sure there is an internet connection and the latest version of Java is installed.

@michael13162 michael13162 released this Aug 29, 2017 · 80 commits to master since this release

Assets 3

SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments.

New features include:

  • Support for combinatorial design
  • SBOL Visual 2 compliant glyphs
  • More extensive support for SynBioHub (private accounts, search, upload)
  • Web of Registries integration
  • Improved provenance support
  • Overlay glyphs/notifications
  • Bug fixes
  • Numerous other improvements

To run, download and double click on the SBOLDesigner-3.0.jar file above. To see detailed error messages and logging, run SBOLDesigner using a terminal by running "java -jar SBOLDesigner-3.0.jar" in the same directory as the file. Make sure there is an internet connection and the latest version of Java is installed.

Aug 29, 2017
Prevents the user from logging into file Registries.

@michael13162 michael13162 released this Jun 14, 2017 · 248 commits to master since this release

Assets 3

SBOLDesigner 2.2 is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner 2.2 completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments.

Jan 28, 2017
Removed unneed validate action since icon missing.
Add error check on images.
Updated classpath

@michael13162 michael13162 released this Oct 23, 2016 · 478 commits to master since this release

Assets 3

SBOLDesigner 2.1 is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner 2.1 completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner 2.1 are SBOL Stack integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

Assets 3

SBOLDesigner 2.0 is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner 2.0 completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner 2.0 are SBOL Stack integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.