Pynome, a Python command line interface tool, provides the user with a way to download desired genome assembly files from the Ensembl database.
$ python setup.py install
Commands can be run one at a time:
$ pynome discover $ pynome list $ pynome download $ pynome prepare
Or strung together.
pynome discover download prepare
Pynome can be run as a Docker application. For iRODs integration you must
create a docker secret named
irods_password with the password of the iRODs
user to be used to
put files into iRODs.
The docker node used must be part of a swarm.
$ docker swarm init
- Add delete() functions.