Projects
Users of our services are encouraged to cite Tapis, Abaco and Chameleon in publications that result from using TACC Cloud resources. Please use the following reference(s):
- Reference Paper
- 1) Tapis: An API Platform for Reproducible, Distributed Computational Research.
Joe Stubbs, Richard Cardone, Mike Packard, Anagha Jamthe, Smruti Padhy, Steve Terry, Julia Looney, Joseph Meiring, Steve Black, Maytal Dahan, Sean Cleveland, Gwen Jacob
Advances in Intelligent Systems and Computing. 2021.
Book chapter; DOI: 10.1007/978-3-030-73100-7_61
Part of ISSN: 2194-5357
Part of ISSN: 2194-5365 - Additional Papers
- 2) Scalable Scientific Interactive Research Computing With Project Scinco.
J. Stubbs, A. Jamthe, N. Freeman, M. Packard, G. Curbelo and C. Hammock
Computing in Science & Engineering, vol. 25, no. 1, pp. 43-50, Jan.-Feb. 2023.
Journal article; DOI:10.1002/cpe.61033) A Decentralized Authorization and Security Framework for Distributed Research Workflows.
R Cardone, S Padhy, S Black, J Stubbs, S Cleveland.
2023 IEEE 47th Annual Computers, Software, and Applications Conference
Journal article; DOI: 10.1109/COMPSAC57700.2023.001024) An Interactive Knowledge and Learning Environment in Smart Foodsheds.
Yamei Tu, Xiaoqi Wang, Rui Qiu, Han-Wei Shen, Michelle Miller, Jinmeng Rao, Song Gao, Patrick R Huber, Allan D Hollander, Matthew Lange, Christian R Garcia, Joe Stubbs.
An Interactive Knowledge and Learning Environment in Smart Foodsheds. IEEE Computer Graphics and Applications 2023. IEEE.
Journal article; DOI: 10.1109/MCG.2023.32639605) Detailed Functional Overview of an API and Workflow Engine for Scientific Research Computing.
Freeman, Nathan Dean; Stubbs, Joe; Cardone, Richard; Garcia, Christian.
PEARC’23.
Journal article; DOI: 10.1145/3569951.3593609. ACM6) Tapis v3 Streams API: Time‐series and data‐driven event support in science gateway infrastructure.
Cleveland, Sean B; Jamthe, Anagha; Padhy, Smruti; Stubbs, Joe; Terry, Steven; Looney, Julia; Cardone, Richard; Packard, Michael; Dahan, Maytal; Jacobs, Gwen A
Concurrency and Computation: Practice and Experience. 2021-10-10.
Journal article; DOI: 10.1002/cpe.6103
Part of ISSN: 1532-0626
Part of ISSN: 1532-06347) Prediction of whole-cell transcriptional response with machine learning.
Eslami, Mohammed; Borujeni, Amin Espah; Eramian, Hamed; Weston, Mark; Zheng, George; Urrutia, Joshua; Corbet, Carolyn; Becker, Diveena; Maschhoff, Paul; Clowers, Katie
Bioinformatics. 2021-09-27
Journal article; DOI: 10.1093/bioinformatics/btab676
Part of ISSN: 1367-4803
Part of ISSN: 1460-20598) Building Tapis v3 Streams API Support for Real-Time Streaming Data Event-Driven Workflows.
Smruti Padhy, Anagha Jamthe, Sean B. Cleveland, Jack A. Smith, Joe Stubbs, Christian Garcia, Michael Packard, Steve Terry, Julia Looney, Richard Cardone, Maytal Dahan, and Gwen A. Jacobs
Practice and Experience in Advanced Research Computing. 2021-07-17.
Conference paper; DOI: 10.1145/3437359.34655679) Real-World, Self-Hosted Kubernetes Experience
Michael Packard, Joe Stubbs, Justin Drake, and Christian Garcia
Practice and Experience in Advanced Research Computing. 2021-07-17
Conference paper; DOI: 10.1145/3437359.346560310) Sustainability in the Tapis Framework.
J Stubbs, R Cardone, S Cleveland, G Jacobs, M Packard, A Jamthe, S Padhy, S Black, S Terry, J Looney, J Meiring, M Dahan
Proceedings of the 54th Hawaii International Conference on System Sciences. 2021
Conference Paper; DOI: 10.24251/hicss.2021.87411) Tapis API Development with Python: Best Practices In Scientific REST API Implementation.
Sean B. Cleveland, Anagha Jamthe, Smruti Padhy, Joe Stubbs, Michael Packard, Julia Looney, Steve Terry, Richard Cardone, Maytal Dahan, and Gwen A. Jacobs
Practice and Experience in Advanced Research Computing. 2020-07-26
Conference paper; DOI: 10.1145/3311790.339664712) SSH-Backed API Performance Case Study.
Anagha J, Packard M, Stubbs J, Curbelo G, Shapi R, and Chalhoub E
Benchmarking, Measuring, and Optimizing. 2020.
Book chapter; DOI: 10.1007/978-3-030-49556-5_27
Part of ISSN: 0302-9743
Part of ISSN: 1611-334913) Building Science Gateway Infrastructure in the Middle of the Pacific and Beyond.
Proceedings of the Practice and Experience on Advanced Research Computing. 2018-07-22
Conference paper; DOI: 10.1145/3219104.321915114) Virtualizing the Stampede2 Supercomputer with Applications to HPC in the Cloud.
Proceedings of the Practice and Experience on Advanced Research Computing. 2018-07-22
Conference paper; DOI: 10.1145/3219104.321913115) Distributed Systems of Microservices Using Docker and Serfnode.
J. Stubbs, W. Moreira and R. Dooley
7th International Workshop on Science Gateways (IWSG). 2015-06.
Conference paper; DOI: 10.1109/iwsg.2015.16
- Reference Paper
- 1) Rapid development of scalable, distributed computation with Abaco.
Proceedings of the 10th International Workshop on Science Gateways (2018).
Conference paper; http://ceur-ws.org/Vol-2357/paper3.pdf - Additional Papers
- 2) Tapis v3 Streams API: Time‐series and data‐driven event support in science gateway infrastructure.
Concurrency and Computation: Practice and Experience. 2021-10-10.
Journal-article; DOI: 10.1002/cpe.6103
Part of ISSN: 1532-0626
Part of ISSN: 1532-06343) Prediction of whole-cell transcriptional response with machine learning.
Bioinformatics. 2021-09-27
Journal article; DOI: 10.1093/bioinformatics/btab676
Part of ISSN: 1367-4803
Part of ISSN: 1460-20594) The Abaco Platform: A Performance and Scalability Study on the Jetstream Cloud.
Advances in Parallel & Distributed Processing, and Applications. 2021
Conference paper; DOI: 10.1007/978-3-030-69984-0_77
Part of ISBN: 978-3-030-69984-05) GenApp, containers and Abaco.
Proceedings of the Practice and Experience in Advanced Research Computing on Rise of the Machines (learning). 2019-07-28.
Conference paper; DOI: 10.1145/3332186.3332191
Keahey, K., Riteau, P., Stanzione, D., Cockerill, T., Mambretti, J., Rad, P., Ruth, P. Chameleon: a Scalable Production Testbed for Computer Science Research, book chapter in "Contemporary High Performance Computing: From Petascale toward Exascale, Volume 3", Jeffrey Vetter ed., 2018
Stewart, C.A., Cockerill, T.M., Foster, I., Hancock, D., Merchant, N., Skidmore, E., Stanzione, D., Taylor, J., Tuecke, S., Turner, G., Vaughn, M., and Gaffney, N.I., Jetstream: a self-provisioned, scalable science and engineering cloud environment. 2015, In Proceedings of the 2015 XSEDE Conference: Scientific Advancements Enabled by Enhanced Cyberinfrastructure. St. Louis, Missouri. ACM: 2792774. p. 1-8. http://dx.doi.org/10.1145/2792745.2792774
If you have any questions about citing us, please email CICsupport@tacc.utexas.edu