MISO: An open-source LIMS for NGS sequencing centres
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readme.md

Build Status Quality Gate DOI

MISO: An open source LIMS for small-to-large scale sequencing centres

© 2017. Earlham Institute, Norwich, UK, Ontario Institute for Cancer Research, Toronto, Canada

MISO project contacts: Robert Davey, Morgan Taschuk

MISO is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

MISO is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with MISO. If not, see http://www.gnu.org/licenses/.

Trying MISO

Docker

The simplest way to get MISO up and running quickly is to use Docker. Images of the most recent MISO releases are available on Docker Hub in misolims/miso-lims. The Docker container is intended as a demonstration and not a permanent installation. Please note that shutting down the Docker container deletes all MISO data, and restarting the Docker container starts up with a fresh MISO. If you wish to store your data longer-term when testing out MISO, please follow the instructions for Running an Instance of MISO below.

To use it:

  1. Install Docker 1.9.1+
  2. docker pull misolims/miso-lims
  3. docker run -p 8090:8080 -d -t misolims/miso-lims

Navigate to http://localhost:8090 to login to miso with the credentials admin/admin.

Please add a sequencing Instrument before you attempt to create libraries, as libraries can only be created for platforms with active (non-retired) instruments.

User Tutorial

There is a tutorial available for introducing new users to MISO's functionality. Some of the resources (MISO URL, ways of contacting the MISO administrators) can be changed by forking and configuring the tutorial repository to suit your lab's specific needs.

Running an Instance of MISO

To run your own MISO instance in the long term, download the latest release.

Installation and configuration details can be found in the MISO installation guide.

Contact and Community