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PhyloCore is an application that uses a phylogeny-based algorithm to identify the core microbiota taxa at the proper taxonomic levels. Two flavors of PhyloCore are provided. One in python (PhyloCore_python.tar.gz) and one in perl (PhyloCore_perl.tar.gz). The python version works in both Unix/Linux and Mac. The perl version only works in Unix/Lin…
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README.md

PhyloCore

PhyloCore is an application that uses a phylogeny-based algorithm to identify the core microbiota taxa at the proper taxonomic levels. Two flavors of PhyloCore are provided. One in python (PhyloCore_python.tar.gz) and one in perl (PhyloCore_perl.tar.gz). The python version works in both Unix/Linux and Mac. The perl version only works in Unix/Linux.

Please cite PhyloCore: A phylogenetic approach to identifying core taxa in microbial communities. http://dx.doi.org/10.1016/j.gene.2016.08.032

Please contact Dr. Tiantian Ren (tr3br@virginia.edu) if you have any questions.

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