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increasing thinning value to avoid memory issues with FullToExtantCon…

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rachelwarnock committed Jun 11, 2018
1 parent edf4501 commit 08f971231f3b1ba7802f6abe6b7685466a2f9b48
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  1. +1 −1 main.tex
@@ -1232,7 +1232,7 @@ \subsubsection{Summarizing the Trees in Treeannotator}\label{treeannotatorSec}

Set a burn-in percentage of 20 for each file, thus discarding the first 20\% of the samples in each tree file.

Both of these files have 50,000 trees, so it is helpful to thin the tree samples and summarize fewer states (to avoid hitting the maximum memory allotted for this program). Turn on \mi{Resample states at lower frequency} and set this value to 2000.
Both of these files have 50,000 trees, so it is helpful to thin the tree samples and summarize fewer states (to avoid hitting the maximum memory allotted for this program). Turn on \mi{Resample states at lower frequency} and set this value to 10000.

Click on the \mi{Choose file ...} button to create an output file and run the program. Name the file: \cl{bearsDivtime.combined.trees}.
\end{framed}

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