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Update LaTeX tutorial
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@@ -76,7 +76,7 @@ \subsubsection{BEAST2 - Bayesian Evolutionary Analysis Sampling Trees
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BEAST2 (\url{http://www.beast2.org}) is a free software package for
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Bayesian evolutionary analysis of molecular sequences using MCMC and
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strictly oriented toward inference using rooted, time-measured
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phylogenetic trees. This tutorial is written for BEAST v2.7.x \citep{Bouckaert2014, Bouckaert2019}.
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phylogenetic trees. This tutorial is written for BEAST v2.7.x \citep{Bouckaert2014, Bouckaert2019}.
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\hypertarget{beauti2---bayesian-evolutionary-analysis-utility}{%
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\subsubsection{BEAUti2 - Bayesian Evolutionary Analysis
@@ -619,10 +619,7 @@ \subsubsection{Adding a calibration
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\item
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Locate \passthrough{\lstinline!Homo\_sapiens!} in the left hand side
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list and click the \textbf{\textgreater\textgreater{}} button to add
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it to the \passthrough{\lstinline!human-chimp!} taxon set. (Note that
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the arrows may not render in BEAST 2.7.
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\textbf{\textgreater\textgreater{}} is the top button and
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\textbf{\textless\textless{}} is at the bottom).
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it to the \passthrough{\lstinline!human-chimp!} taxon set.
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\item
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Locate \passthrough{\lstinline!Pan!} in the left hand side list and
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click the \textbf{\textgreater\textgreater{}} button to add it to the
@@ -748,7 +745,7 @@ \subsubsection{Setting the MCMC
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\item
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Set the \textbf{Log Every} parameter to \textbf{200}.
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\item
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Leave the filename as is (\passthrough{\lstinline!$filebase).log!}).
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Leave the filename as is (\passthrough{\lstinline!$(filebase).log!}).
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\end{itemize}
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\end{framed}
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