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Efficient variant-call data storage and retrieval library using the TileDB storage library.
C++ Java Python C CMake Shell
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tdenniston Remove VFS usage from dataset open. (#46)
This allows TileDB-VCF to work with TileDB Cloud for exports.
Latest commit 58b17d1 Dec 10, 2019

README.md

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TileDB-VCF

TileDB-VCF is a library for efficient storage and retrieval of genomics variant-call data. With it, you can easily ingest large amounts of variant-call data from the VCF (or BCF) format into a 2D sparse TileDB array that allows for highly compressed storage and efficient, parallelized queries on the variant data. The motivation and idea behind storing VCF data in a 2D sparse array is described in our Genomics use case docs.

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