WARNING: html_static_path entry '_static' does not exist
Usage: sphinx-build [OPTIONS] COMMAND [ARGS]...
Try 'sphinx-build -h' for help.

Error: No such option: -M
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/dsl.py:docstring of tiatoolbox.annotation.dsl:53: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.from_ndjson:6: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.from_ndjson:3: WARNING: Inline literal start-string without end-string.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.from_ndjson:3: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.from_ndjson:8: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.from_ndjson:10: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.from_ndjson:12: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.from_ndjson:13: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.from_ndjson:14: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.from_ndjson:15: CRITICAL: Unexpected section title.

}
```
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.to_ndjson:6: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.to_ndjson:3: WARNING: Inline literal start-string without end-string.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.to_ndjson:3: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.to_ndjson:8: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.to_ndjson:10: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.to_ndjson:12: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.to_ndjson:13: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.to_ndjson:14: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/annotation/storage.py:docstring of tiatoolbox.annotation.storage.AnnotationStore.to_ndjson:15: CRITICAL: Unexpected section title.

}
```
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.annotation.storage.AnnotationStore.rst:: ERROR: Anonymous hyperlink mismatch: 2 references but 0 targets.
See "backrefs" attribute for IDs.
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.cli.common.TIAToolboxCLI.rst:30: WARNING: autosummary: failed to import TIAToolboxCLI.commands.
Possible hints:
* KeyError: 'TIAToolboxCLI'
* ModuleNotFoundError: No module named 'tiatoolbox.cli.common.TIAToolboxCLI'; 'tiatoolbox.cli.common' is not a package
* AttributeError: type object 'TIAToolboxCLI' has no attribute 'TIAToolboxCLI'
* ModuleNotFoundError: No module named 'TIAToolboxCLI'
* ImportError: 
* AttributeError: type object 'TIAToolboxCLI' has no attribute 'commands'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.cli.common.TIAToolboxCLI.rst:30: WARNING: autosummary: failed to import TIAToolboxCLI.callback.
Possible hints:
* KeyError: 'TIAToolboxCLI'
* ModuleNotFoundError: No module named 'tiatoolbox.cli.common.TIAToolboxCLI'; 'tiatoolbox.cli.common' is not a package
* AttributeError: type object 'TIAToolboxCLI' has no attribute 'TIAToolboxCLI'
* ModuleNotFoundError: No module named 'TIAToolboxCLI'
* AttributeError: type object 'TIAToolboxCLI' has no attribute 'callback'
* ImportError: 
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.cli.common.TIAToolboxCLI.rst:30: WARNING: autosummary: failed to import TIAToolboxCLI.params.
Possible hints:
* KeyError: 'TIAToolboxCLI'
* ModuleNotFoundError: No module named 'tiatoolbox.cli.common.TIAToolboxCLI'; 'tiatoolbox.cli.common' is not a package
* AttributeError: type object 'TIAToolboxCLI' has no attribute 'params'
* AttributeError: type object 'TIAToolboxCLI' has no attribute 'TIAToolboxCLI'
* ModuleNotFoundError: No module named 'TIAToolboxCLI'
* ImportError: 
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.cli.common.TIAToolboxCLI.rst:30: WARNING: autosummary: failed to import TIAToolboxCLI.name.
Possible hints:
* AttributeError: type object 'TIAToolboxCLI' has no attribute 'name'
* KeyError: 'TIAToolboxCLI'
* ModuleNotFoundError: No module named 'tiatoolbox.cli.common.TIAToolboxCLI'; 'tiatoolbox.cli.common' is not a package
* AttributeError: type object 'TIAToolboxCLI' has no attribute 'TIAToolboxCLI'
* ModuleNotFoundError: No module named 'TIAToolboxCLI'
* ImportError: 
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.cli.common.TIAToolboxCLI.rst:30: WARNING: autosummary: failed to import TIAToolboxCLI.context_settings.
Possible hints:
* KeyError: 'TIAToolboxCLI'
* ModuleNotFoundError: No module named 'tiatoolbox.cli.common.TIAToolboxCLI'; 'tiatoolbox.cli.common' is not a package
* AttributeError: type object 'TIAToolboxCLI' has no attribute 'TIAToolboxCLI'
* ModuleNotFoundError: No module named 'TIAToolboxCLI'
* AttributeError: type object 'TIAToolboxCLI' has no attribute 'context_settings'
* ImportError: 
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.abc.ModelABC.rst:34: WARNING: autosummary: failed to import ModelABC.training.
Possible hints:
* ModuleNotFoundError: No module named 'ModelABC'
* ModuleNotFoundError: No module named 'tiatoolbox.models.abc.ModelABC'; 'tiatoolbox.models.abc' is not a package
* ImportError: 
* AttributeError: type object 'ModelABC' has no attribute 'training'
* AttributeError: type object 'ModelABC' has no attribute 'ModelABC'
* KeyError: 'ModelABC'
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/__init__.py:docstring of tiatoolbox.models.architecture.fetch_pretrained_weights:3: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/__init__.py:docstring of tiatoolbox.models.architecture.fetch_pretrained_weights:4: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/__init__.py:docstring of tiatoolbox.models.architecture.get_pretrained_model:5: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.hovernet.DenseBlock.rst:32: WARNING: autosummary: failed to import DenseBlock.training.
Possible hints:
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.hovernet.DenseBlock'; 'tiatoolbox.models.architecture.hovernet' is not a package
* KeyError: 'DenseBlock'
* AttributeError: type object 'DenseBlock' has no attribute 'training'
* ModuleNotFoundError: No module named 'DenseBlock'
* ImportError: 
* AttributeError: type object 'DenseBlock' has no attribute 'DenseBlock'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.hovernet.HoVerNet.rst:35: WARNING: autosummary: failed to import HoVerNet.training.
Possible hints:
* KeyError: 'HoVerNet'
* AttributeError: type object 'HoVerNet' has no attribute 'HoVerNet'
* ModuleNotFoundError: No module named 'HoVerNet'
* ImportError: 
* AttributeError: type object 'HoVerNet' has no attribute 'training'
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.hovernet.HoVerNet'; 'tiatoolbox.models.architecture.hovernet' is not a package
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/hovernet.py:docstring of tiatoolbox.models.architecture.hovernet.HoVerNet.get_instance_info:21: WARNING: Definition list ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/hovernet.py:docstring of tiatoolbox.models.architecture.hovernet.HoVerNet.postproc:21: WARNING: Definition list ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.hovernet.ResidualBlock.rst:32: WARNING: autosummary: failed to import ResidualBlock.training.
Possible hints:
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.hovernet.ResidualBlock'; 'tiatoolbox.models.architecture.hovernet' is not a package
* AttributeError: type object 'ResidualBlock' has no attribute 'training'
* KeyError: 'ResidualBlock'
* AttributeError: type object 'ResidualBlock' has no attribute 'ResidualBlock'
* ImportError: 
* ModuleNotFoundError: No module named 'ResidualBlock'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.hovernet.TFSamepaddingLayer.rst:32: WARNING: autosummary: failed to import TFSamepaddingLayer.training.
Possible hints:
* AttributeError: type object 'TFSamepaddingLayer' has no attribute 'TFSamepaddingLayer'
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.hovernet.TFSamepaddingLayer'; 'tiatoolbox.models.architecture.hovernet' is not a package
* KeyError: 'TFSamepaddingLayer'
* ImportError: 
* ModuleNotFoundError: No module named 'TFSamepaddingLayer'
* AttributeError: type object 'TFSamepaddingLayer' has no attribute 'training'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.hovernetplus.HoVerNetPlus.rst:33: WARNING: autosummary: failed to import HoVerNetPlus.training.
Possible hints:
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.hovernetplus.HoVerNetPlus'; 'tiatoolbox.models.architecture.hovernetplus' is not a package
* KeyError: 'HoVerNetPlus'
* ModuleNotFoundError: No module named 'HoVerNetPlus'
* ImportError: 
* AttributeError: type object 'HoVerNetPlus' has no attribute 'training'
* AttributeError: type object 'HoVerNetPlus' has no attribute 'HoVerNetPlus'
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/hovernetplus.py:docstring of tiatoolbox.models.architecture.hovernetplus.HoVerNetPlus.postproc:15: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/hovernetplus.py:docstring of tiatoolbox.models.architecture.hovernetplus.HoVerNetPlus.postproc:20: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/hovernetplus.py:docstring of tiatoolbox.models.architecture.hovernetplus.HoVerNetPlus.postproc:24: WARNING: Definition list ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/hovernetplus.py:docstring of tiatoolbox.models.architecture.hovernetplus.HoVerNetPlus.postproc:26: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/hovernetplus.py:docstring of tiatoolbox.models.architecture.hovernetplus.HoVerNetPlus.postproc:28: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/hovernetplus.py:docstring of tiatoolbox.models.architecture.hovernetplus.HoVerNetPlus.postproc:30: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.idars.IDaRS.rst:32: WARNING: autosummary: failed to import IDaRS.training.
Possible hints:
* ModuleNotFoundError: No module named 'IDaRS'
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.idars.IDaRS'; 'tiatoolbox.models.architecture.idars' is not a package
* KeyError: 'IDaRS'
* AttributeError: type object 'IDaRS' has no attribute 'IDaRS'
* AttributeError: type object 'IDaRS' has no attribute 'training'
* ImportError: 
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.micronet.MicroNet.rst:35: WARNING: autosummary: failed to import MicroNet.training.
Possible hints:
* AttributeError: type object 'MicroNet' has no attribute 'training'
* KeyError: 'MicroNet'
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.micronet.MicroNet'; 'tiatoolbox.models.architecture.micronet' is not a package
* AttributeError: type object 'MicroNet' has no attribute 'MicroNet'
* ImportError: 
* ModuleNotFoundError: No module named 'MicroNet'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.unet.ResNetEncoder.rst:33: WARNING: autosummary: failed to import ResNetEncoder.training.
Possible hints:
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.unet.ResNetEncoder'; 'tiatoolbox.models.architecture.unet' is not a package
* AttributeError: type object 'ResNetEncoder' has no attribute 'ResNetEncoder'
* ModuleNotFoundError: No module named 'ResNetEncoder'
* AttributeError: type object 'ResNetEncoder' has no attribute 'training'
* ImportError: 
* KeyError: 'ResNetEncoder'
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/unet.py:docstring of tiatoolbox.models.architecture.unet.UNetModel:15: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.unet.UNetModel.rst:33: WARNING: autosummary: failed to import UNetModel.training.
Possible hints:
* KeyError: 'UNetModel'
* AttributeError: type object 'UNetModel' has no attribute 'UNetModel'
* ModuleNotFoundError: No module named 'UNetModel'
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.unet.UNetModel'; 'tiatoolbox.models.architecture.unet' is not a package
* ImportError: 
* AttributeError: type object 'UNetModel' has no attribute 'training'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.unet.UnetEncoder.rst:32: WARNING: autosummary: failed to import UnetEncoder.training.
Possible hints:
* KeyError: 'UnetEncoder'
* AttributeError: type object 'UnetEncoder' has no attribute 'training'
* ModuleNotFoundError: No module named 'UnetEncoder'
* AttributeError: type object 'UnetEncoder' has no attribute 'UnetEncoder'
* ImportError: 
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.unet.UnetEncoder'; 'tiatoolbox.models.architecture.unet' is not a package
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.utils.UpSample2x.rst:32: WARNING: autosummary: failed to import UpSample2x.training.
Possible hints:
* KeyError: 'UpSample2x'
* AttributeError: type object 'UpSample2x' has no attribute 'UpSample2x'
* ImportError: 
* AttributeError: type object 'UpSample2x' has no attribute 'training'
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.utils.UpSample2x'; 'tiatoolbox.models.architecture.utils' is not a package
* ModuleNotFoundError: No module named 'UpSample2x'
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/architecture/vanilla.py:docstring of tiatoolbox.models.architecture.vanilla.CNNBackbone:7: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.vanilla.CNNBackbone.rst:33: WARNING: autosummary: failed to import CNNBackbone.training.
Possible hints:
* KeyError: 'CNNBackbone'
* AttributeError: type object 'CNNBackbone' has no attribute 'training'
* ImportError: 
* AttributeError: type object 'CNNBackbone' has no attribute 'CNNBackbone'
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.vanilla.CNNBackbone'; 'tiatoolbox.models.architecture.vanilla' is not a package
* ModuleNotFoundError: No module named 'CNNBackbone'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.models.architecture.vanilla.CNNModel.rst:34: WARNING: autosummary: failed to import CNNModel.training.
Possible hints:
* KeyError: 'CNNModel'
* AttributeError: type object 'CNNModel' has no attribute 'training'
* AttributeError: type object 'CNNModel' has no attribute 'CNNModel'
* ModuleNotFoundError: No module named 'CNNModel'
* ModuleNotFoundError: No module named 'tiatoolbox.models.architecture.vanilla.CNNModel'; 'tiatoolbox.models.architecture.vanilla' is not a package
* ImportError: 
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/dataset/abc.py:docstring of tiatoolbox.models.dataset.abc.PatchDatasetABC.preproc_func:1: WARNING: duplicate object description of tiatoolbox.models.dataset.abc.PatchDatasetABC.preproc_func, other instance in _autosummary/tiatoolbox.models.dataset.abc.PatchDatasetABC, use :noindex: for one of them
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/dataset/classification.py:docstring of tiatoolbox.models.dataset.classification.WSIPatchDataset:40: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/dataset/classification.py:docstring of tiatoolbox.models.dataset.classification.WSIPatchDataset:41: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/dataset/info.py:docstring of tiatoolbox.models.dataset.info.KatherPatchDataset:12: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/dataset/info.py:docstring of tiatoolbox.models.dataset.info.KatherPatchDataset:13: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/engine/patch_predictor.py:docstring of tiatoolbox.models.engine.patch_predictor.PatchPredictor.predict:39: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/models/engine/patch_predictor.py:docstring of tiatoolbox.models.engine.patch_predictor.PatchPredictor.predict:59: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/tools/graph.py:docstring of tiatoolbox.tools.graph.SlideGraphConstructor.build:57: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/tools/graph.py:docstring of tiatoolbox.tools.graph.SlideGraphConstructor.visualise:13: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/tools/patchextraction.py:docstring of tiatoolbox.tools.patchextraction.PatchExtractor:15: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/tools/patchextraction.py:docstring of tiatoolbox.tools.patchextraction.PatchExtractor:15: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/tools/patchextraction.py:docstring of tiatoolbox.tools.patchextraction.PatchExtractor:15: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/tools/patchextraction.py:docstring of tiatoolbox.tools.patchextraction.PatchExtractor:15: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/utils/env_detection.py:docstring of tiatoolbox.utils.env_detection:5: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/utils/image.py:docstring of tiatoolbox.utils.image.sub_pixel_read:9: WARNING: Explicit markup ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/utils/visualization.py:docstring of tiatoolbox.utils.visualization.overlay_prediction_contours:18: WARNING: Inline interpreted text or phrase reference start-string without end-string.
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.instance_path.
Possible hints:
* AttributeError: type object 'TileServer' has no attribute 'instance_path'
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.config.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'config'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.url_build_error_handlers.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'url_build_error_handlers'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.before_first_request_funcs.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'before_first_request_funcs'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.teardown_appcontext_funcs.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'teardown_appcontext_funcs'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.shell_context_processors.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'shell_context_processors'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.blueprints.
Possible hints:
* AttributeError: type object 'TileServer' has no attribute 'blueprints'
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.extensions.
Possible hints:
* AttributeError: type object 'TileServer' has no attribute 'extensions'
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.url_map.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'url_map'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.import_name.
Possible hints:
* AttributeError: type object 'TileServer' has no attribute 'import_name'
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.template_folder.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'template_folder'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.root_path.
Possible hints:
* AttributeError: type object 'TileServer' has no attribute 'root_path'
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.cli.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'cli'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.view_functions.
Possible hints:
* AttributeError: type object 'TileServer' has no attribute 'view_functions'
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.error_handler_spec.
Possible hints:
* AttributeError: type object 'TileServer' has no attribute 'error_handler_spec'
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.before_request_funcs.
Possible hints:
* AttributeError: type object 'TileServer' has no attribute 'before_request_funcs'
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.after_request_funcs.
Possible hints:
* AttributeError: type object 'TileServer' has no attribute 'after_request_funcs'
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.teardown_request_funcs.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'teardown_request_funcs'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.template_context_processors.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'template_context_processors'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.url_value_preprocessors.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'url_value_preprocessors'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/docs/_autosummary/tiatoolbox.visualization.tileserver.TileServer.rst:32: WARNING: autosummary: failed to import TileServer.url_default_functions.
Possible hints:
* ModuleNotFoundError: No module named 'TileServer'
* AttributeError: type object 'TileServer' has no attribute 'url_default_functions'
* ModuleNotFoundError: No module named 'tiatoolbox.visualization.tileserver.TileServer'; 'tiatoolbox.visualization.tileserver' is not a package
* KeyError: 'TileServer'
* ImportError: 
* AttributeError: type object 'TileServer' has no attribute 'TileServer'
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/wsicore/wsireader.py:docstring of tiatoolbox.wsicore.wsireader.WSIReader.find_read_rect_params:35: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/wsicore/wsireader.py:docstring of tiatoolbox.wsicore.wsireader.WSIReader.find_read_rect_params:37: WARNING: Block quote ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/wsicore/wsireader.py:docstring of tiatoolbox.wsicore.wsireader.WSIReader.find_read_rect_params:42: ERROR: Unexpected indentation.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/wsicore/wsireader.py:docstring of tiatoolbox.wsicore.wsireader.WSIReader.open:21: WARNING: Field list ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/wsicore/wsireader.py:docstring of tiatoolbox.wsicore.wsireader.WSIReader.open:30: WARNING: Definition list ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/wsicore/wsireader.py:docstring of tiatoolbox.wsicore.wsireader.get_wsireader:19: WARNING: Field list ends without a blank line; unexpected unindent.
/Users/dbae/current/TiaToolbox/tiatoolbox/tiatoolbox/wsicore/wsireader.py:docstring of tiatoolbox.wsicore.wsireader.get_wsireader:27: WARNING: Definition list ends without a blank line; unexpected unindent.

Notebook error:
AttributeError in _notebooks/01-wsi-reading.ipynb:
module 'jinja2.utils' has no attribute 'escape'
make: *** [html] Error 2