From f79f671b9a3e71758d1aca54627853094a0ff567 Mon Sep 17 00:00:00 2001
From: TomKellyGenetics <tomkellygenetics@gmail.com>
Date: Tue, 11 Oct 2022 10:05:38 +0900
Subject: [PATCH] update UniverSC module to restructured repo
 https://github.com/nf-core/modules/pull/2141

remove files for restructed UniverSC module (avoids duplicate tests)
---
 modules/{ => nf-core}/universc/CITATION.cff               | 0
 modules/{ => nf-core}/universc/CITATION.md                | 0
 modules/{ => nf-core}/universc/Dockerfile                 | 0
 .../{ => nf-core}/universc/Dockerfile.cellranger_clean    | 0
 modules/{ => nf-core}/universc/Dockerfile.universc        | 0
 modules/{ => nf-core}/universc/README.md                  | 0
 modules/{ => nf-core}/universc/main.nf                    | 0
 modules/{ => nf-core}/universc/meta.yml                   | 0
 tests/modules/{ => nf-core}/universc/main.nf              | 8 ++++----
 tests/modules/{ => nf-core}/universc/nextflow.config      | 0
 tests/modules/{ => nf-core}/universc/test.yml             | 0
 11 files changed, 4 insertions(+), 4 deletions(-)
 rename modules/{ => nf-core}/universc/CITATION.cff (100%)
 rename modules/{ => nf-core}/universc/CITATION.md (100%)
 rename modules/{ => nf-core}/universc/Dockerfile (100%)
 rename modules/{ => nf-core}/universc/Dockerfile.cellranger_clean (100%)
 rename modules/{ => nf-core}/universc/Dockerfile.universc (100%)
 rename modules/{ => nf-core}/universc/README.md (100%)
 rename modules/{ => nf-core}/universc/main.nf (100%)
 rename modules/{ => nf-core}/universc/meta.yml (100%)
 rename tests/modules/{ => nf-core}/universc/main.nf (84%)
 rename tests/modules/{ => nf-core}/universc/nextflow.config (100%)
 rename tests/modules/{ => nf-core}/universc/test.yml (100%)

diff --git a/modules/universc/CITATION.cff b/modules/nf-core/universc/CITATION.cff
similarity index 100%
rename from modules/universc/CITATION.cff
rename to modules/nf-core/universc/CITATION.cff
diff --git a/modules/universc/CITATION.md b/modules/nf-core/universc/CITATION.md
similarity index 100%
rename from modules/universc/CITATION.md
rename to modules/nf-core/universc/CITATION.md
diff --git a/modules/universc/Dockerfile b/modules/nf-core/universc/Dockerfile
similarity index 100%
rename from modules/universc/Dockerfile
rename to modules/nf-core/universc/Dockerfile
diff --git a/modules/universc/Dockerfile.cellranger_clean b/modules/nf-core/universc/Dockerfile.cellranger_clean
similarity index 100%
rename from modules/universc/Dockerfile.cellranger_clean
rename to modules/nf-core/universc/Dockerfile.cellranger_clean
diff --git a/modules/universc/Dockerfile.universc b/modules/nf-core/universc/Dockerfile.universc
similarity index 100%
rename from modules/universc/Dockerfile.universc
rename to modules/nf-core/universc/Dockerfile.universc
diff --git a/modules/universc/README.md b/modules/nf-core/universc/README.md
similarity index 100%
rename from modules/universc/README.md
rename to modules/nf-core/universc/README.md
diff --git a/modules/universc/main.nf b/modules/nf-core/universc/main.nf
similarity index 100%
rename from modules/universc/main.nf
rename to modules/nf-core/universc/main.nf
diff --git a/modules/universc/meta.yml b/modules/nf-core/universc/meta.yml
similarity index 100%
rename from modules/universc/meta.yml
rename to modules/nf-core/universc/meta.yml
diff --git a/tests/modules/universc/main.nf b/tests/modules/nf-core/universc/main.nf
similarity index 84%
rename from tests/modules/universc/main.nf
rename to tests/modules/nf-core/universc/main.nf
index e11a3268402..45b87aaf425 100644
--- a/tests/modules/universc/main.nf
+++ b/tests/modules/nf-core/universc/main.nf
@@ -2,10 +2,10 @@
 
 nextflow.enable.dsl = 2
 
-include { CELLRANGER_MKGTF } from '../../../modules/cellranger/mkgtf/main.nf'
-include { CELLRANGER_MKREF } from '../../../modules/cellranger/mkref/main.nf'
-include { CELLRANGER_COUNT_OS } from '../../../modules/universc/main.nf'
-include { UNIVERSC } from '../../../modules/universc/main.nf'
+include { CELLRANGER_MKGTF } from '../../../../modules/nf-core/cellranger/mkgtf/main.nf'
+include { CELLRANGER_MKREF } from '../../../../modules/nf-core/cellranger/mkref/main.nf'
+include { CELLRANGER_COUNT_OS } from '../../../../modules/nf-core/universc/main.nf'
+include { UNIVERSC } from '../../../../modules/nf-core/universc/main.nf'
 
 workflow test_cellranger_10x {
     
diff --git a/tests/modules/universc/nextflow.config b/tests/modules/nf-core/universc/nextflow.config
similarity index 100%
rename from tests/modules/universc/nextflow.config
rename to tests/modules/nf-core/universc/nextflow.config
diff --git a/tests/modules/universc/test.yml b/tests/modules/nf-core/universc/test.yml
similarity index 100%
rename from tests/modules/universc/test.yml
rename to tests/modules/nf-core/universc/test.yml