Simple visualization of alpha and beta diversity in R
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LICENSE.txt
QIIIME_in_R.rmd
README.md
alpha_diversity.txt
commands.r
mouse_mapfile.txt
ninja_otutable.txt
otutable_r10k.txt
sample_otu.png
weighted_unifrac_dm.txt

README.md

16S QIIME Data in R

This workflow requires:

This tutorial shows you how to:

  • Load QIIME v1.9.1 and lower ouptuts into R
  • Plot alpha and beta diversity
  • Run basic stats

You can follow the QIIME_data_R.rmd file by clicking it and viewing in a browser. There is also a commands.r file with all the r code ready for R studio.