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<?xml version="1.0" encoding="utf-8"?>
<isatab-config-file xmlns="http://www.ebi.ac.uk/bii/isatab_configuration#">
<isatab-configuration table-name="investigation">
<measurement term-label="[investigation]" term-accession="" source-abbreviation="" />
<technology term-label="" term-accession="" source-abbreviation="" />
<field header="Investigation Identifier" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION">
<description><![CDATA[A user defined identifier for the investigation.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Title" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION">
<description><![CDATA[A title for the Investigation.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Description" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION">
<description><![CDATA[A brief description of the investigation aims.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Submission Date" data-type="Date" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION">
<description><![CDATA[The date the investigation was submitted.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Public Release Date" data-type="Date" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION">
<description><![CDATA[The date the investigation was release publicly.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Comment [Created with configuration]" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="true" is-forced-ontology="false" section="INVESTIGATION">
<description><![CDATA[A field indicating which ISA configuration was used to create the ISAtab file.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Comment [Last Opened With Configuration]" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="true" is-forced-ontology="false" section="INVESTIGATION">
<description><![CDATA[A field indicating which ISA configuration was last used to open the ISAtab file.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Comment [Owning Organisation URI]" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION">
<description><![CDATA[Owning Organisation URI]]></description>
<default-value><![CDATA[]]></default-value>
<recommended-ontologies>
<ontology id="TBO" abbreviation="TBO" name="ToxBank organisation" version="0.1" />
</recommended-ontologies>
</field>
<field header="Comment [Consortium URI]" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION">
<description><![CDATA[Consortium URI]]></description>
<default-value><![CDATA[]]></default-value>
<recommended-ontologies>
<ontology id="TBC" abbreviation="TBC" name="ToxBank consortium" version="0.1" />
</recommended-ontologies>
</field>
<field header="Comment [Owner URI]" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION">
<description><![CDATA[Toxbank user URI]]></description>
<default-value><![CDATA[]]></default-value>
<recommended-ontologies>
<ontology id="TBU" abbreviation="TBU" name="ToxBank users" version="0.1" />
</recommended-ontologies>
</field>
<field header="Comment [Investigation keywords]" data-type="Ontology term" is-file-field="false" is-multiple-value="true" is-required="true" is-hidden="false" is-forced-ontology="true" section="INVESTIGATION">
<description><![CDATA[Investigation keywords.]]></description>
<default-value><![CDATA[]]></default-value>
<recommended-ontologies>
<ontology id="TBK" abbreviation="TBK" name="ToxBank keywords" version="0.1" />
</recommended-ontologies>
</field>
<field header="Comment [Investigation licence]" data-type="Ontology term" is-file-field="false" is-multiple-value="true" is-required="true" is-hidden="false" is-forced-ontology="true" section="INVESTIGATION">
<description><![CDATA[Investigation licence.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation PubMed ID" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION PUBLICATIONS">
<description><![CDATA[The PubMed ID related to this publication (if available).]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Publication DOI" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION PUBLICATIONS">
<description><![CDATA[The DOI related to this publication (if available).]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Publication Author List" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION PUBLICATIONS">
<description><![CDATA[The authors who contributed to this publication.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Publication Title" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION PUBLICATIONS">
<description><![CDATA[The title of the publication.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Publication Status" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION PUBLICATIONS">
<description><![CDATA[The status of this publication, e.g. Published, Submitted, etc.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Comment[Investigation Person REF]" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION CONTACTS">
<description><![CDATA[a comment field to allow submitter to supply an identifier for Persons involved in the ISA Investigation. It could be an ORCID identifier for instance]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Person Last Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION CONTACTS">
<description><![CDATA[The last name/surname of the contact.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Person First Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION CONTACTS">
<description><![CDATA[The first name/forename of the contact.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Person Mid Initials" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION CONTACTS">
<description><![CDATA[The mid initial of the contact.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Person Email" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION CONTACTS">
<description><![CDATA[The email corresponding to this contact.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Person Phone" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION CONTACTS">
<description><![CDATA[A phone number for this contact, if available.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Person Fax" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION CONTACTS">
<description><![CDATA[A fax number for this contact, if available.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Person Address" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION CONTACTS">
<description><![CDATA[The address for this contact, preferably, their institution.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Person Affiliation" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION CONTACTS">
<description><![CDATA[The affiliation for this contact.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Investigation Person Roles" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="INVESTIGATION CONTACTS">
<description><![CDATA[The role of the person in this investigation.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Comment [Investigation Person URI]" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="true" section="INVESTIGATION CONTACTS">
<description><![CDATA[Toxbank User URI]]></description>
<default-value><![CDATA[]]></default-value>
<recommended-ontologies>
<ontology id="TBU" abbreviation="TBU" name="ToxBank users" version="0.1" />
</recommended-ontologies>
</field>
<field header="Study Identifier" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="STUDY">
<description><![CDATA[A user defined identifier for the study.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Title" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="STUDY">
<description><![CDATA[A title for the Study.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Description" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="STUDY">
<description><![CDATA[A brief description of the study aims.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Comment[Study Grant Number]" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY">
<description><![CDATA[Optional Comment field to allow users to provide grant identifiers. If a grant identifier is supplied, a funding agency should be specified]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Comment[Study Funding Agency]" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY">
<description><![CDATA[Optional Comment field to allow users to provide the name of identifier of a funding agency. It should be specified if a grant number has been supplied]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Submission Date" data-type="Date" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY">
<description><![CDATA[The date the study was submitted.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Public Release Date" data-type="Date" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY">
<description><![CDATA[The date the study was released publicly.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study File Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="true" is-forced-ontology="false" section="STUDY">
<description><![CDATA[The name of the study sample file linked to this Study]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study PubMed ID" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="STUDY PUBLICATIONS">
<description><![CDATA[The PubMed ID related to this publication (if available).]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Publication DOI" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="STUDY PUBLICATIONS">
<description><![CDATA[The DOI related to this publication (if available).]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Publication Author List" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="STUDY PUBLICATIONS">
<description><![CDATA[The authors who contributed to this publication.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Publication Title" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="STUDY PUBLICATIONS">
<description><![CDATA[The title of the publication.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Publication Status" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="STUDY PUBLICATIONS">
<description><![CDATA[The status of this publication, e.g. Published, Submitted, etc.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Comment[Study Person REF]" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY CONTACTS">
<description><![CDATA[a comment field to allow submitter to supply an identifier for Persons involved in the ISA Study. It could be an ORCID identifier for instance]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Person Last Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="STUDY CONTACTS">
<description><![CDATA[The last name/surname of the contact.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Person First Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="STUDY CONTACTS">
<description><![CDATA[The first name/forename of the contact.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Person Mid Initials" data-type="String" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="false" section="STUDY CONTACTS">
<description><![CDATA[The mid initial of the contact.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Person Email" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY CONTACTS">
<description><![CDATA[The email corresponding to this contact.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Person Phone" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY CONTACTS">
<description><![CDATA[A phone number for this contact, if available.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Person Fax" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY CONTACTS">
<description><![CDATA[A fax number for this contact, if available.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Person Address" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY CONTACTS">
<description><![CDATA[The address for this contact, preferably, their institution.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Person Affiliation" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY CONTACTS">
<description><![CDATA[The affiliation for this contact.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Person Roles" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY CONTACTS">
<description><![CDATA[The role of the person in this Study.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Factor Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY FACTORS">
<description><![CDATA[The name of the Factor driving this study, e.g. Dose, Collection Time Point, Compound, and so forth]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Factor Type" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY FACTORS">
<description><![CDATA[The type of the Factor driving this study, e.g. EFO:Dose (from Ontology), or Dose if the Factor name is something related to Dose as well, etc.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Design Type" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY DESIGN DESCRIPTORS">
<description><![CDATA[The type of study design being employed, e.g. Observation, Intervention, Cross-Over, etc.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Assay Measurement Type" data-type="List" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY ASSAYS">
<description><![CDATA[The measurement being observed in this assay, e.g. Transcription Profiling, Metabolite Profiling]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Assay Technology Type" data-type="List" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY ASSAYS">
<description><![CDATA[The technology being employed to observe this measurement, e.g. DNA microarray, NMR, Mass Spectrometry and so forth]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Assay Technology Platform" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY ASSAYS">
<description><![CDATA[The technology platform used, e.g. Affymetrix, Illumina, Solexa, SOLiD, Bruker, etc.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Assay File Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY ASSAYS">
<description><![CDATA[The name of the file which contains the information about this assay, the samples and pipeline used.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Protocol Name" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY PROTOCOLS">
<description><![CDATA[The name of the protocol, e.g. RNA Extraction Protocol]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Protocol Type" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY PROTOCOLS">
<description><![CDATA[The type of the protocol, preferably coming from an Ontology, e.g. Extraction Protocol]]></description>
<default-value><![CDATA[]]></default-value>
<recommended-ontologies>
<ontology id="TBP" abbreviation="TBP" name="ToxBank protocols" version="0.1" />
</recommended-ontologies>
</field>
<field header="Study Protocol Description" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY PROTOCOLS">
<description><![CDATA[A description of the Protocol.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Protocol URI" data-type="Long String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY PROTOCOLS">
<description><![CDATA[A URI to link out to a publication, web page, etc. describing the protocol.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Protocol Version" data-type="String" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY PROTOCOLS">
<description><![CDATA[The version of the protocol used, where applicable.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Protocol Parameters Name" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY PROTOCOLS">
<description><![CDATA[The parameters used when executing this protocol.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Protocol Components Name" data-type="String" is-file-field="false" is-multiple-value="true" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY PROTOCOLS">
<description><![CDATA[The components used when carrying out this protocol.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Study Protocol Components Type" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="false" is-hidden="false" is-forced-ontology="false" section="STUDY PROTOCOLS">
<description><![CDATA[The type of Components used in this Protocol.]]></description>
<default-value><![CDATA[]]></default-value>
</field>
<field header="Comment [Protocol URI]" data-type="Ontology term" is-file-field="false" is-multiple-value="false" is-required="true" is-hidden="false" is-forced-ontology="true" section="STUDY PROTOCOLS">
<description><![CDATA[Toxbank Protocol URI]]></description>
<default-value><![CDATA[]]></default-value>
<recommended-ontologies>
<ontology id="TBP" abbreviation="TBP" name="ToxBank protocols" version="0.1" />
</recommended-ontologies>
</field>
<structured-field name="factors" />
</isatab-configuration>
</isatab-config-file>
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