Tractables · guyvdbroeck · Oct 1, 2020 · Jul 9, 2020 · Jul 11, 2020 · Jul 13, 2020
diff --git a/.gitignore b/.gitignore
@@ -10,4 +10,5 @@
 *.vscode
 **checkpoint.ipynb
 *Manifest.toml
-docs/build/
+docs/build/
+scratch/
diff --git a/.travis.yml b/.travis.yml
@@ -12,22 +12,23 @@ jobs:
   include:
     - stage: "Unit Tests"      
       os: linux
-      julia: 1.3
+      julia: 1.5
       install:
-        - julia -e 'using Pkg; Pkg.activate("."); Pkg.add(PackageSpec(url="https://github.com/Juice-jl/LogicCircuits.jl")); Pkg.instantiate(); Pkg.precompile()'
+        - julia -e 'using Pkg; Pkg.activate("."); Pkg.add(PackageSpec(url="https://github.com/Juice-jl/LogicCircuits.jl")); Pkg.instantiate(); Pkg.precompile();'
         - julia -e 'using Pkg; Pkg.activate("./test"); Pkg.add(PackageSpec(url="https://github.com/Juice-jl/LogicCircuits.jl")); Pkg.develop(PackageSpec(path = pwd())); Pkg.instantiate(); Pkg.precompile();'
 
       script:
         - julia --code-coverage --color=yes -p2 test/runtests.jl
 
       after_success:
-        - julia -e 'using Pkg; Pkg.add("Coverage"); using Coverage; Codecov.submit(process_folder())'
+        - julia -e 'using Pkg; Pkg.add("Coverage"); using Coverage; Codecov.submit(process_folder());'
 
     - stage: "Deploy Documentation"      
       os: linux
-      julia: 1.3
+      julia: 1.5
       script:
-        - julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
+        - julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(url="https://github.com/Juice-jl/LogicCircuits.jl")); Pkg.instantiate(); Pkg.precompile();'
+        - julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate();'
         - julia --project=docs/ docs/make.jl
       after_success: skip
 
@@ -38,4 +39,4 @@ notifications:
     on_start: always
     on_error: always
     rooms:
-      - secure: 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
+      - secure: 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
diff --git a/Project.toml b/Project.toml
@@ -4,10 +4,15 @@ version = "0.1.1"
 
 [deps]
 BlossomV = "6c721016-9dae-5d90-abf6-67daaccb2332"
+CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
 Clustering = "aaaa29a8-35af-508c-8bc3-b662a17a0fe5"
+DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
 LightGraphs = "093fc24a-ae57-5d10-9952-331d41423f4d"
+LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 LogicCircuits = "a7847b3b-b7f1-4dd5-83c3-60e0aa0f8599"
+LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890"
+MLDatasets = "eb30cadb-4394-5ae3-aed4-317e484a6458"
 MetaGraphs = "626554b9-1ddb-594c-aa3c-2596fe9399a5"
 Metis = "2679e427-3c69-5b7f-982b-ece356f1e94b"
 Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
@@ -19,17 +24,22 @@ SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 StatsFuns = "4c63d2b9-4356-54db-8cca-17b64c39e42c"
+TikzGraphs = "b4f28e30-c73f-5eaf-a395-8a9db949a742"
 
 [compat]
 BlossomV = "0.4"
+CUDA = "1.2"
 Clustering = "0.14"
+DataFrames = "0.21"
 DataStructures = "0.17"
 LightGraphs = "1.3"
 LogicCircuits = "0.1.1"
+LoopVectorization = "0.8.20"
+MLDatasets = "0.4, 0.5"
 MetaGraphs = "0.6"
 Metis = "1.0"
 Reexport = "0.2"
 SimpleWeightedGraphs = "1.1"
 StatsBase = "0.33"
 StatsFuns = "0.9"
-julia = "1.3"
+julia = "1.5"
diff --git a/docs/src/api/internals/io.md b/docs/src/api/internals/io.md
diff --git a/docs/src/api/internals/loadsave.md b/docs/src/api/internals/loadsave.md
@@ -0,0 +1,6 @@
+
+# LoadSave
+
+```@autodocs
+Modules = [ProbabilisticCircuits.LoadSave]
+```
diff --git a/docs/src/api/internals/logistic.md b/docs/src/api/internals/logistic.md
diff --git a/docs/src/api/internals/probabilistic.md b/docs/src/api/internals/probabilistic.md
diff --git a/docs/src/api/internals/reasoning.md b/docs/src/api/internals/reasoning.md
diff --git a/docs/src/api/internals/structureLearner.md b/docs/src/api/internals/structureLearner.md
diff --git a/docs/src/api/internals/utils.md b/docs/src/api/internals/utils.md
@@ -1,5 +1,5 @@
 # Utils
 
 ```@autodocs
-Modules = [Utils]
+Modules = [ProbabilisticCircuits.Utils]
 ```
diff --git a/src/IO/CircuitLineCompiler.jl b/src/IO/CircuitLineCompiler.jl
diff --git a/src/IO/IO.jl b/src/IO/IO.jl
diff --git a/src/IO/Loaders.jl b/src/IO/Loaders.jl
diff --git a/src/LoadSave/LoadSave.jl b/src/LoadSave/LoadSave.jl
@@ -0,0 +1,11 @@
+module LoadSave
+
+using LogicCircuits
+using ...ProbabilisticCircuits
+
+include("circuit_line_compiler.jl")
+include("circuit_loaders.jl")
+include("circuit_savers.jl")
+include("plot.jl")
+
+end