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CTAT-Mutations Release v4.3.0

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4.3.0 June 29, 2024

  • bugfix w/ cigar-N-splitter, incorporating the required read group ID in each alignment entry - impacts long read calling sensitivity

  • for faster workflow, set default boosting to 'none' and turned off blat_ED and annot pass annotations unless boosting is indicated.

  • ctat mutation wdl and Terra wrapper wdls updated

  • added bamsifter and strand-specific read normalization

  • replace gatk cigar-N-splitter with our own pysam based version

  • add ctat-mutations to dockstore for easy integration into terra or other supported cloud platforms