From 0496342b38756b5bf7e5e1d9ebf5f091e41effb7 Mon Sep 17 00:00:00 2001 From: David Widmann Date: Fri, 2 Apr 2021 16:06:20 +0200 Subject: [PATCH 1/4] Add CI tests and CompatHelper --- .github/workflows/CI.yml | 51 ++++++++++++++++++++++++++++++ .github/workflows/CompatHelper.yml | 16 ++++++++++ Project.toml | 1 - test/Project.toml | 4 +++ test/runtests.jl | 12 +++++-- 5 files changed, 80 insertions(+), 4 deletions(-) create mode 100644 .github/workflows/CI.yml create mode 100644 .github/workflows/CompatHelper.yml diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml new file mode 100644 index 0000000..6c27593 --- /dev/null +++ b/.github/workflows/CI.yml @@ -0,0 +1,51 @@ +name: CI + +on: + push: + branches: + - master + pull_request: + +jobs: + test: + name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} + runs-on: ${{ matrix.os }} + continue-on-error: ${{ matrix.version == 'nightly' }} + strategy: + fail-fast: false + matrix: + version: + - '1' + - '1.0' + - 'nightly' + os: + - ubuntu-latest + - macOS-latest + - windows-latest + arch: + - x64 + steps: + - uses: actions/checkout@v2 + - uses: julia-actions/setup-julia@v1 + with: + version: ${{ matrix.version }} + arch: ${{ matrix.arch }} + - uses: actions/cache@v1 + env: + cache-name: cache-artifacts + with: + path: ~/.julia/artifacts + key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }} + restore-keys: | + ${{ runner.os }}-test-${{ env.cache-name }}- + ${{ runner.os }}-test- + ${{ runner.os }}- + - uses: julia-actions/julia-buildpkg@v1 + - uses: julia-actions/julia-runtest@v1 + - uses: julia-actions/julia-processcoverage@v1 + - name: Send coverage + if: matrix.version == '1' && matrix.os == 'ubuntu-latest' + uses: coverallsapp/github-action@master + with: + github-token: ${{ secrets.GITHUB_TOKEN }} + path-to-lcov: ./lcov.info diff --git a/.github/workflows/CompatHelper.yml b/.github/workflows/CompatHelper.yml new file mode 100644 index 0000000..0cb6d66 --- /dev/null +++ b/.github/workflows/CompatHelper.yml @@ -0,0 +1,16 @@ +name: CompatHelper +on: + schedule: + - cron: '00 00 * * *' + workflow_dispatch: +jobs: + CompatHelper: + runs-on: ubuntu-latest + steps: + - name: Pkg.add("CompatHelper") + run: julia -e 'using Pkg; Pkg.add("CompatHelper")' + - name: CompatHelper.main() + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + COMPATHELPER_PRIV: ${{ secrets.COMPATHELPER_PRIV }} # for triggering CI + run: julia -e 'using CompatHelper; CompatHelper.main(; subdirs=["", "test"])' diff --git a/Project.toml b/Project.toml index e7a8667..3c1e497 100644 --- a/Project.toml +++ b/Project.toml @@ -5,7 +5,6 @@ license = "MIT" desc = "Common interfaces for probabilistic programming" version = "0.1.2" - [deps] AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001" diff --git a/test/Project.toml b/test/Project.toml index 645baa0..e40f3f7 100644 --- a/test/Project.toml +++ b/test/Project.toml @@ -1,3 +1,7 @@ [deps] Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + +[compat] +Documenter = "0.26.3" +julia = "1" diff --git a/test/runtests.jl b/test/runtests.jl index f33124c..e67f4d8 100644 --- a/test/runtests.jl +++ b/test/runtests.jl @@ -1,3 +1,11 @@ +# Activate test environment on older Julia versions +if VERSION < v"1.2" + using Pkg: Pkg + Pkg.activate(@__DIR__) + Pkg.develop(PackageSpec(path=dirname(@__DIR__))) + Pkg.instantiate() +end + using AbstractPPL using Documenter using Test @@ -7,9 +15,7 @@ using Test DocMeta.setdocmeta!( AbstractPPL, :DocTestSetup, - quote - using AbstractPPL - end; + :(using AbstractPPL); recursive=true, ) doctest(AbstractPPL; manual=false) From 03f6d97146c7496b21c66860ab46601191047983 Mon Sep 17 00:00:00 2001 From: David Widmann Date: Fri, 2 Apr 2021 16:29:23 +0200 Subject: [PATCH 2/4] Add Pkg to test environment --- test/Project.toml | 1 + 1 file changed, 1 insertion(+) diff --git a/test/Project.toml b/test/Project.toml index e40f3f7..8a9e93e 100644 --- a/test/Project.toml +++ b/test/Project.toml @@ -1,5 +1,6 @@ [deps] Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" +Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [compat] From e9e7e81dc748fbe8679f6367c768aed498f3b199 Mon Sep 17 00:00:00 2001 From: David Widmann Date: Fri, 2 Apr 2021 16:36:50 +0200 Subject: [PATCH 3/4] Qualify PackageSpec --- test/Project.toml | 1 - test/runtests.jl | 2 +- 2 files changed, 1 insertion(+), 2 deletions(-) diff --git a/test/Project.toml b/test/Project.toml index 8a9e93e..e40f3f7 100644 --- a/test/Project.toml +++ b/test/Project.toml @@ -1,6 +1,5 @@ [deps] Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4" -Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [compat] diff --git a/test/runtests.jl b/test/runtests.jl index e67f4d8..82dc420 100644 --- a/test/runtests.jl +++ b/test/runtests.jl @@ -2,7 +2,7 @@ if VERSION < v"1.2" using Pkg: Pkg Pkg.activate(@__DIR__) - Pkg.develop(PackageSpec(path=dirname(@__DIR__))) + Pkg.develop(Pkg.PackageSpec(; path=dirname(@__DIR__))) Pkg.instantiate() end From 0f72a65648d92c4f2d824f49b50a6c5d541905d2 Mon Sep 17 00:00:00 2001 From: David Widmann Date: Fri, 2 Apr 2021 16:46:28 +0200 Subject: [PATCH 4/4] Update README --- .github/workflows/CI.yml | 19 ++++++++++++++----- README.md | 4 ++++ 2 files changed, 18 insertions(+), 5 deletions(-) diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml index 6c27593..ab39fa4 100644 --- a/.github/workflows/CI.yml +++ b/.github/workflows/CI.yml @@ -24,6 +24,11 @@ jobs: - windows-latest arch: - x64 + include: + - version: '1' + os: ubuntu-latest + arch: x64 + coverage: true steps: - uses: actions/checkout@v2 - uses: julia-actions/setup-julia@v1 @@ -43,9 +48,13 @@ jobs: - uses: julia-actions/julia-buildpkg@v1 - uses: julia-actions/julia-runtest@v1 - uses: julia-actions/julia-processcoverage@v1 - - name: Send coverage - if: matrix.version == '1' && matrix.os == 'ubuntu-latest' - uses: coverallsapp/github-action@master + if: matrix.coverage + - uses: codecov/codecov-action@v1 + if: matrix.coverage with: - github-token: ${{ secrets.GITHUB_TOKEN }} - path-to-lcov: ./lcov.info + file: lcov.info + - uses: coverallsapp/github-action@master + if: matrix.coverage + with: + github-token: ${{ secrets.GITHUB_TOKEN }} + path-to-lcov: lcov.info diff --git a/README.md b/README.md index f6f4d4b..cb6cc3a 100644 --- a/README.md +++ b/README.md @@ -1,5 +1,9 @@ # AbstractPPL.jl +[![CI](https://github.com/TuringLang/AbstractPPL.jl/workflows/CI/badge.svg?branch=master)](https://github.com/TuringLang/AbstractPPL.jl/actions?query=workflow%3ACI+branch%3Amaster) +[![Coverage Status](https://coveralls.io/repos/github/TuringLang/AbstractPPL.jl/badge.svg?branch=master)](https://coveralls.io/github/TuringLang/AbstractPPL.jl?branch=master) +[![Codecov](https://codecov.io/gh/TuringLang/AbstractPPL.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/TuringLang/AbstractPPL.jl) + A new light-weight package to factor out interfaces and associated APIs for probabilistic programming languages (especially their modelleing languages). The overall goals are creating an abstract type and minimal set of functions that will be supported all model and trace types. Some