• 5 2 Updated Jul 16, 2018
  • An ontology of extension classes grounded in the OBOs

    1 Updated Jul 8, 2018
  • Continuous integration for the Open Biomedical Ontologies

    Shell 2 Updated Jul 5, 2018
  • This repository houses code to build a library (stacks) cataloging layered (stacked) annotations for full text scientific articles from the biomedical domain.

    BSD-3-Clause Updated Jun 28, 2018
  • Python 139 Apache-2.0 Updated Jun 27, 2018
  • A text annotation plugin for Protege 5+

    Java 1 1 MIT Updated Jun 23, 2018
  • A library of code for parsing (mostly biomedical) data source files and converting their contents to RDF

    Java 2 4 BSD-3-Clause Updated Jun 19, 2018
  • An open-source NLP research library, built on PyTorch.

    Python 452 Apache-2.0 Updated Apr 18, 2018
  • A library of NLP related code

    Java 2 2 BSD-3-Clause Updated Mar 27, 2018
  • A collection of NLP pipelines including pipelines that use the UIMA ConceptMapper to annotate text with concepts from the Open Biomedical Ontologies

    AMPL 2 3 BSD-3-Clause Updated Mar 25, 2018
  • Code for Mechanistic Inference class

    Python Apache-2.0 Updated Mar 20, 2018
  • a library of utility code for a variety of "common" tasks

    Java 2 BSD-3-Clause Updated Feb 7, 2018
  • Code and follow-up from Ignacio's lab rotation in 2016.

    Python Updated Nov 15, 2017
  • KaBOB (Knowledge Base Of Biomedicine)

    Clojure 4 5 EPL-1.0 Updated Nov 8, 2017
  • kr

    Forked from drlivingston/kr

    Clojure API for RDF and SPARQL - provides consistent access to APIs including Jena and Sesame

    Clojure 3 14 Updated Nov 1, 2017
  • SPARQL sugar for Eval and Read in Clojure

    JavaScript 2 Updated Oct 26, 2017
  • Clojure 1 Updated May 9, 2016
  • Python Updated Dec 2, 2014
  • Java Updated Dec 31, 2013
  • Shell 1 5 Updated May 14, 2013
  • 1 Updated Jul 6, 2012
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