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An ontology of extension classes grounded in the OBOs
Continuous integration for the Open Biomedical Ontologies
This repository houses code to build a library (stacks) cataloging layered (stacked) annotations for full text scientific articles from the biomedical domain.
A text annotation plugin for Protege 5+
A library of code for parsing (mostly biomedical) data source files and converting their contents to RDF
An open-source NLP research library, built on PyTorch.
A library of NLP related code
A collection of NLP pipelines including pipelines that use the UIMA ConceptMapper to annotate text with concepts from the Open Biomedical Ontologies
Code for Mechanistic Inference class
a library of utility code for a variety of "common" tasks
Code and follow-up from Ignacio's lab rotation in 2016.
KaBOB (Knowledge Base Of Biomedicine)
Clojure API for RDF and SPARQL - provides consistent access to APIs including Jena and Sesame
SPARQL sugar for Eval and Read in Clojure
a fork of: http://biomedner.googlecode.com/svn