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Illumina analysis pipeline
R package for extracting and visualizing mutational patterns in base substitution catalogues
UMCU Genetics CWL CommandLineTools
ExonCov: Exon coverage statistics from BAM files
Variant annotation and prioritization
Clarity LIMS epp scripts
Clarity LIMS portal app
Ontologies, RDF-generators, and a web interface for querying it all.
Utility scripts to work with Genologics Clarity LIMS
TargetClone: A multi-sample approach for reconstructing subclonal evolution of tumors
Database and interface for vcf files.
The CADD annotation pipeline annotates the contents of a tab-delimted database into an input VCF (in the INFO field). The chunkscript is used to run the annotation script in parallel, to annotate faster.
ipython notebooks for Bachelor course bioinformatics
Synergistic pair detection
The code that drives https://hpcguix.op.umcutrecht.nl.
Site-specific pages for hpcguix-web.
Tools for extracting information using HMFtools.
Code and data related to the meta-analysis of fat distribution in UK Biobank and GIANT
Small tools for genetics research
Configuration files for hpcguix-web.
Extensions for the dtw package in R
Deployment and management tools for graph databases on Utrecht's HPC.
CWL workflow implementation of IAP.
CWL implementation of the UMCU/RNASeq pipeline