check --as-cran issue: checking package dependencies ... NOTE

[appling]

• checking package dependencies ... NOTE
  No repository set, so cyclic dependency check skipped

[appling]

@miguelcleon - can you figure this one out? it's a NOTE that only occurs when the --as-cran option is set for R CMD check.

[miguelcleon]

I think the advice here should do it, but it isn't working for me.
http://stackoverflow.com/questions/23164929/note-in-r-cran-check-no-repository-set-so-cyclic-dependency-check-skipped

[appling]

Shoot, thought it might be hard. I have no time to work on this today, so
if you can keep trying, that'll be great.

On Tue, Jun 16, 2015 at 11:18 AM, miguelcleon notifications@github.com
wrote:

I think the advice here should do it, but it isn't working for me.

http://stackoverflow.com/questions/23164929/note-in-r-cran-check-no-repository-set-so-cyclic-dependency-check-skipped

—
Reply to this email directly or view it on GitHub
https://github.com/McDowellLab/loadflex/issues/53#issuecomment-112483892
.

Alison Appling
Cell: (919) 964-0196

[miguelcleon]

ok

[miguelcleon]

I thought something like this might work, but it didn't help.
Sys.setenv(R_PROFILE_USER="C:/Users/leonmi/Google Drive/loadflexGitHub/.RProfile")
Then in that .RProfile file setting
local({r <- getOption("repos"); r["CRAN"] <- 'http://cran.rstudio.com/'; options(repos = r)})

or the devtools recommended
options(
repos = c(CRAN = "http://cran.rstudio.com/"),
browserNLdisabled = TRUE,
deparse.max.lines = 2)

Neither worked.

I tried making the same changes in RProfile.site in C:\Users\leonmi\Documents\R\R-3.2.0\etc That didn't do it either.

This might be helpful:
It appears to be devtools working through the same issue.
r-lib/devtools#602

[appling]

just came across this talk - about 2/3 of the way down, it hints that indicating the .Rprofile in the .travis.yml file (and therefore also appveyor.yml) might help. https://github.com/jennybc/2015-06-28_r-summit-talk/blob/master/2015-06-28_bryan-r-summit-talk.pdf

[miguelcleon]

So that will only affect the travis and appveyor builds, but I also get the warning locally in R studio which would be unaffected by changes to .travis.yml and appveyor.yml

[aappling-usgs]

Haven't seen this in a while.