project=Gene-MRI
$project will solve your problem of where to start with documentation, by providing a basic explanation of how to do it easily.
Look how easy it is to use:
import project
# Get your stuff done
project.do_stuff()
Features
- Allen Gene Expression native format to NIFTI space
- Make things faster
Installation
- FSL: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation
- Add FSL path in your Linux/Mac/Virtual Machine awareness.
How to do: Open Terminal:
nano .bash_profile --paste following in the end and save (ctrl + x , press Yes)-- FSLDIR=/usr/local/fsl . ${FSLDIR}/etc/fslconf/fsl.sh PATH=${FSLDIR}/bin:${PATH} export FSLDIR PATH --
-
AFNI: https://afni.nimh.nih.gov/pub/dist/HOWTO/howto/ht00_inst/html/ Follow the instructions and install. Add AFNI path also in .bashrc / .bash_profile
-
Download the codes via github.com/$project
or git pull
Contribute
- Issue Tracker: github.com/$project/$project/issues
- Source Code: github.com/$project/$project
Support
If you are having issues, please let us know. Prof. Dr. med. Thomas Nickl-Jockschat: thomas-nickl-jockschat@uiowa.edu Vinod Kumar: mail.vinod@yahoo.com
Please use the following reference when utilizing our gene expression tool: https://www.ncbi.nlm.nih.gov/pubmed/29844452
License
The project is licensed under the BSD license.
Credits
FSL, AFNI, NIFTI toolbox, Waxholm guys, Allen API, Allen Institute's wonderful database on genes and all the wonderful who directly indirectly contributed in this process.