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project=Gene-MRI

$project will solve your problem of where to start with documentation, by providing a basic explanation of how to do it easily.

Look how easy it is to use:

import project
# Get your stuff done
project.do_stuff()

Features

  • Allen Gene Expression native format to NIFTI space
  • Make things faster

Installation

  1. FSL: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation
  2. Add FSL path in your Linux/Mac/Virtual Machine awareness.

How to do: Open Terminal:

nano .bash_profile --paste following in the end and save (ctrl + x , press Yes)-- FSLDIR=/usr/local/fsl . ${FSLDIR}/etc/fslconf/fsl.sh PATH=${FSLDIR}/bin:${PATH} export FSLDIR PATH --

  1. AFNI: https://afni.nimh.nih.gov/pub/dist/HOWTO/howto/ht00_inst/html/ Follow the instructions and install. Add AFNI path also in .bashrc / .bash_profile

  2. Download the codes via github.com/$project

or git pull

Contribute

  • Issue Tracker: github.com/$project/$project/issues
  • Source Code: github.com/$project/$project

Support

If you are having issues, please let us know. Prof. Dr. med. Thomas Nickl-Jockschat: thomas-nickl-jockschat@uiowa.edu Vinod Kumar: mail.vinod@yahoo.com

Please use the following reference when utilizing our gene expression tool: https://www.ncbi.nlm.nih.gov/pubmed/29844452

License

The project is licensed under the BSD license.

Credits

FSL, AFNI, NIFTI toolbox, Waxholm guys, Allen API, Allen Institute's wonderful database on genes and all the wonderful who directly indirectly contributed in this process.

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