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Commits on Jan 17, 2012
  1. Now using oasis DevFiles plugin.

    agarwal committed Jan 17, 2012
  2. Minor updates to README.md.

    agarwal committed Jan 17, 2012
  3. Updated README.md.

    agarwal committed Jan 17, 2012
  4. Updated INSTALL file.

    agarwal committed Jan 17, 2012
Commits on Jan 12, 2012
Commits on Jan 10, 2012
Commits on Jan 9, 2012
  1. [_oasis] Added Homepage field.

    agarwal committed Jan 9, 2012
Commits on Jan 6, 2012
  1. [PhredScore] Switched from using int offset to a polymorphic variant.…

    agarwal committed Jan 6, 2012
    … Makes code more type safe.
Commits on Jan 4, 2012
  1. higher-level count function

    pveber committed Jan 4, 2012
Commits on Jan 3, 2012
  1. refactoring

    pveber committed Jan 3, 2012
  2. doc cosmetics

    pveber committed Jan 3, 2012
  3. reworking of datastructures for keeping a collection of (possibly ann…

    pveber committed Jan 3, 2012
    …otated) regions in a genome
    
    - deleted hastily added stuff from my guizmin library (which is buggy, BTW)
    - added signatures and an implementation from the genome-map branch
  4. A datastructure (based on Hashtbl) to accumulate values.

    pveber committed Jan 3, 2012
    An Accu.t can be seen as a generalized histogram: values are mapped to bins, and each bin has a corresponding value which may be its size or its contents depending on the need.
  5. Merge pull request #6 from agarwal/interval-tree

    pveber committed Jan 3, 2012
    Interval tree preliminary implementation.
  6. cleanup

    pveber committed Jan 3, 2012
Commits on Jan 2, 2012
  1. updated build files

    pveber committed Jan 2, 2012
  2. optimization of interval addition using inlining

    pveber committed Jan 2, 2012
    max and mins function probably used to call polymorphic compare and slowed the addition function a lot. Now performance is comparable to stdlib's map (see https://github.com/pveber/test-decorated-map). Which means the simple information added to each node for approximate searching has a reasonable cost.
Commits on Dec 28, 2011
  1. code cleanup

    pveber committed Dec 28, 2011
Commits on Dec 26, 2011
  1. bugfix on IntervalTree construction and close interval search

    pveber committed Dec 26, 2011
    find_closest now passes tests
Commits on Dec 24, 2011
  1. a test on find_closest that fails

    pveber committed Dec 24, 2011
  2. fix addition of an element in an IntervalTree

    pveber committed Dec 24, 2011
    contrary to sets, identical elements (here intervals with same bounds) should be repeated in the collection
Commits on Dec 23, 2011
  1. Merge pull request #5 from agarwal/testsuite

    agarwal committed Dec 23, 2011
    A tiny setup to write tests (inspired from Batteries)