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OCaml Bioinformatics Library
OCaml Shell
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README.md

Biocaml - The OCaml Bioinformatics Library

DESCRIPTION

Biocaml aims to be a high-performance user-friendly library for Bioinformatics. Current features include:

  • Support for several standard data formats

    • SGR
    • WIG
    • FASTA
    • BED
    • GFF (version 2 and 3)
    • UCSC track files
    • ELAND
    • BPMAP
    • CEL

    Support includes not just parsing and printing, but also various operations dependent on the specific data type represented.

  • Classification of items into bins and histograms with polymorphic bin types.

  • Basic math and statistics routines

  • Coming soon:

    • Peak finding algorithms
    • Efficient querying of annotations
    • Efficient computations for sets of integer intervals
    • ... and more!

INSTALLATION

Please see INSTALL file.

LICENSE

The Biocaml library is distributed according to the LGPL + linking exception terms as defined in the LICENSE file, which you should have received a copy of along with this library.

CONTACT

Ashish Agarwal: agarwal1975@gmail.com
Website: http://biocaml.org

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