Biocaml - The OCaml Bioinformatics Library
Biocaml aims to be a high-performance user-friendly library for Bioinformatics. Current features include:
Support for several standard data formats
- GFF (version 2 and 3)
- UCSC track files
Support includes not just parsing and printing, but also various operations dependent on the specific data type represented.
Classification of items into bins and histograms with polymorphic bin types.
Basic math and statistics routines
- Peak finding algorithms
- Efficient querying of annotations
- Efficient computations for sets of integer intervals
- ... and more!
Please see INSTALL file.
The Biocaml library is distributed according to the LGPL + linking exception terms as defined in the LICENSE file, which you should have received a copy of along with this library.