From 1c8f6f63dd7883d8fbb72318eeb42f07396eb33c Mon Sep 17 00:00:00 2001 From: Mike Panciera Date: Wed, 16 Mar 2016 13:39:28 -0400 Subject: [PATCH] added note that gene info is optional [Skip CI] --- docs/scripts/degen_regions.rst | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/docs/scripts/degen_regions.rst b/docs/scripts/degen_regions.rst index 830f3b7..a8e6c4f 100644 --- a/docs/scripts/degen_regions.rst +++ b/docs/scripts/degen_regions.rst @@ -70,6 +70,14 @@ position 1 is coding degen_regions -i tests/Den4_MAAPS_TestData16.fasta -o output.tsv --gb-file tests/testinput/sequence.gb --cds 1,1 +Without Gene Information +------------------------ +The gene information is optional. If it is not provided the output file will not be annotated with the gene information; otherwise, the output will look the same (you will also lose the "non-coding region" flag.) + +.. code-block:: bash + + degen_regions -i tests/Den4_MAAPS_TestData16.fasta -o output.tsv + Output ------