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Avoid exiting due to i-ADHoRe warnings #46

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merged 1 commit into from
Jan 18, 2023
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ksrates workflow for paralog Ks was interrupted if the following warning was raised by i-ADHoRe:

ERROR i-ADHoRe execution failed with standard error output:
Warning: Dubious indirect gene relationship between GENE1 and GENE2, closest genes get same color in alignment
ERROR Exiting.

This happened because the warning is handled as an error by i-ADHoRe (see issue #45 for more details) and consequently by ksrates too.

This merge request prints the warnings without interrupting the flow.

@Cecilia-Sensalari Cecilia-Sensalari changed the title Avoid exit due to i-ADHoRe warnings Avoid exiting due to i-ADHoRe warnings Jan 18, 2023
@Cecilia-Sensalari Cecilia-Sensalari merged commit 27b0ea9 into master Jan 18, 2023
@Cecilia-Sensalari Cecilia-Sensalari deleted the fix_iadhore branch January 18, 2023 11:48
@Cecilia-Sensalari Cecilia-Sensalari mentioned this pull request Mar 29, 2024
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