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Commits on Jul 10, 2012
  1. @cj5-sanger
  2. @cj5-sanger

    new AutoQC vrtrack object

    cj5-sanger committed
Commits on Jul 6, 2012
  1. @CraigPorter

    added get_hierarchy_path_of_object function to VRTrack.pm

    CraigPorter committed
     - function based on get_hierarchy_path_of_lane
     - get_hierarchy_path_of_lane calls new function
     - get_hierarchy_path_of_object returns undef if no hierarchy path created
Commits on May 31, 2012
  1. @andrewjpage

    Merge pull request #89 from CraigPorter/update_mapping_report_tests

    andrewjpage committed
    updated mapping report tests
  2. @andrewjpage

    Merge pull request #90 from andrewjpage/croucher_protocol_rna_seq_csv…

    andrewjpage committed
    …_header
    
    different spreadsheet headers for standard rna protocol
Commits on May 22, 2012
  1. @andrewjpage

    fix tests

    andrewjpage committed
Commits on May 21, 2012
  1. @andrewjpage
Commits on May 18, 2012
  1. @CraigPorter

    updated mapping report tests

    CraigPorter committed
Commits on May 15, 2012
  1. @andrewjpage
  2. @andrewjpage
Commits on May 8, 2012
  1. @andrewjpage

    merged

    andrewjpage committed
Commits on May 2, 2012
  1. @CraigPorter
Commits on May 1, 2012
  1. @sb10

    moved the implementation of VertRes::Utils::Hierarchy methods lane_in…

    sb10 committed
    …fo(), lane_hierarchy_objects(), hierarchy_coverage() and get_lanes() into VRTrack::VRTrack, so that these methods can be used without a VertRes dependency
  2. @sb10

    moved functionality of VertRes::Utils::VRTrackFactory into VRTrack::F…

    sb10 committed
    …actory, letting you instantiate a VRTrack db without VertRes modules dependencies
Commits on Apr 30, 2012
  1. @CraigPorter

    Merge pull request #81 from CraigPorter/std_deviation

    CraigPorter committed
    Depth of coverage - mean and SD.
Commits on Apr 19, 2012
  1. @sb10

    added new transaction() method to VRTrack, which is a superior replac…

    sb10 committed
    …ement to transaction_start() and transaction_commit(), though there is likely too much user code using those to get rid of them; when only transaction() is used we solve deadlock issues when multiple processes want to update the same table at the same time
Commits on Mar 19, 2012
  1. @CraigPorter
Commits on Mar 16, 2012
  1. @CraigPorter
  2. @CraigPorter
  3. @CraigPorter
Commits on Mar 5, 2012
  1. @andrewjpage

    Merge pull request #62 from andrewjpage/tophat

    andrewjpage committed
    Tophat mapper
  2. @andrewjpage

    fix tophat tests

    andrewjpage committed
  3. @andrewjpage
  4. @andrewjpage
  5. @andrewjpage

    copy bwa tests to tophat

    andrewjpage committed
Commits on Mar 2, 2012
  1. @andrewjpage
  2. @CraigPorter

    Merge pull request #61 from CraigPorter/import_validation

    CraigPorter committed
    Import_iRODS_fastq validates compressed fastq against iRODS.
  3. @CraigPorter

    Import_iRODS_fastq pipeline validates compressed fastq against iRODS …

    CraigPorter committed
    …metadata.Import_iRODS_fastq pipeline validates compressed fastq against iRODS metadata.
Commits on Feb 27, 2012
  1. @andrewjpage
Commits on Feb 23, 2012
  1. @CraigPorter
Commits on Feb 9, 2012
  1. @andrewjpage
  2. @andrewjpage
Commits on Feb 8, 2012
  1. @andrewjpage
  2. @andrewjpage
Commits on Feb 7, 2012
  1. @andrewjpage
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