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1kg_lane.bam
1kg_lane_sq_invalid.gff
1kg_lane_sq_valid.gff
2822_6_1_1000.fastq
2822_6_1_1000.fastq.fastqcheck
2822_6_2_1000.fastq
Citrobacter_rodentium_ICC168_v1_test.gff
Citrobacter_rodentium_slice
NA06985.chrom7.ILLUMINA.bwa.SRP000031.20091216.bam
NA11918SLX.headed.sam
SRR001629.99999_1.cigar
SRR001629.99999_1.fastq
SRR001629.99999_2.cigar
SRR001629.99999_2.fastq
SRR001629_1.cigar
SRR001629_1.fastq
SRR001629_1.fastq.gz
SRR001629_1.filtered.fastq
SRR001629_2.cigar
SRR001629_2.fastq
SRR001629_2.filtered.fastq
S_suis_P17.dict
S_suis_P17.fa
S_suis_P17.fa.fai
S_suis_P17.rod
VertResIO.get_remote_file.test_file.txt
bad_1.fastq.gz
bad_2.fastq.gz
bam.flagstat
bam2.flagstat
bam_exome_qc.bam
bam_exome_qc.bam.bai
bam_exome_qc_bait.interval_list
bam_exome_qc_bait.intervals
bam_exome_qc_ref.fa
bam_exome_qc_ref.fa.fai
bam_exome_qc_target.interval_list
bam_exome_qc_target.intervals
duplicates.bas
empty.bas
example.bas
example2.bas
example3.bas
extract_intervals.txt
extract_intervals_all.bam
extract_intervals_extracted.bam
fastq.gz.fastqcheck
fod.txt
fofn.txt
glf_checkgenotype.out
glf_checkgenotype2.out
hard_soft.bam
headed1.bam
headed2.bam
header.sam
human_b36_male.dict
io_test.bgzip.gz
io_test.txt
io_test.txt.gz
lsf-memlimit.o
lsf-timelimit.o
mapping_heirarchy.tar
mapping_hierarchy_with_bams.tar.gz
multi_readgroup.bam
ncbi37.dict
non_unique_header.txt
non_unique_header2.txt
nsort1.bam
nsort2.bam
only_mapped.sam
only_mapped_1.fastq
only_mapped_2.fastq
pileup.txt
qualmapBayesian.txt
qualmapBayesian_simple.txt
rg_pu.bam
rgtagged.bam
rna_seq_bitwise_flags_set.bam
sequence.index
sequence.index.2010
sequence.index.headerless
simple.bam
simple.bam.bai
simple.sam
simple2.bam
small_multi_sequence.bam
small_slice.bam
ssaha.fa
ssaha1.cigar
ssaha2.cigar
tradis_tags.fastq
vcf.3.3
vrtrack_pombe_wgs.sql
vrtrack_vertres_1kg.samples
vrtrack_vertres_1kg.si
vrtrack_vertres_test.samples
vrtrack_vertres_test.si
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