From 3493d04665f646d47772fba43385393dd57206f8 Mon Sep 17 00:00:00 2001 From: carlosp420 Date: Thu, 19 Mar 2015 12:13:41 +0200 Subject: [PATCH] fixing partition genes bug --- voseq/create_dataset/utils.py | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/voseq/create_dataset/utils.py b/voseq/create_dataset/utils.py index 737dbcb0..e549ab0a 100644 --- a/voseq/create_dataset/utils.py +++ b/voseq/create_dataset/utils.py @@ -62,8 +62,6 @@ def get_charset_block(self): bp_count_start = 0 bp_count_end = 0 self.gene_codes.sort() - print(">>>>>>>sel.gene_codes", self.gene_codes) - print(">>>>>>>sel.gene_codes_and_lengths", self.gene_codes_and_lengths) for gene in self.gene_codes_and_lengths: bp_count_end += self.gene_codes_and_lengths[gene] line = ' charset ' + gene + ' = ' + str( @@ -73,8 +71,8 @@ def get_charset_block(self): return charset_block def get_partitions_block(self): - line = 'partition GENES = ' + str(len(self.gene_codes)) - line += ': ' + ', '.join(self.gene_codes) + ';\n' + line = 'partition GENES = ' + str(len(self.gene_codes_and_lengths)) + line += ': ' + ', '.join([i for i in self.gene_codes_and_lengths]) + ';\n' line += '\nset partition = GENES;\n' return [line]