Chr Start End Ref Alt Func.refGene Gene.refGene GeneDetail.refGene ExonicFunc.refGene AAChange.refGene 1000G_ALL 1000G_AFR 1000G_AMR 1000G_EAS 1000G_EUR 1000G_SAS ExAC_Freq ExAC_AFR ExAC_AMR ExAC_EAS ExAC_FIN ExAC_NFE ExAC_OTH ExAC_SAS ESP6500si_ALL ESP6500si_AA ESP6500si_EA CG46 NCI60 dbSNP COSMIC_ID COSMIC_DIS ClinVar_SIG ClinVar_DIS ClinVar_ID ClinVar_DB ClinVar_DBID GWAS_DIS GWAS_OR GWAS_BETA GWAS_PUBMED GWAS_SNP GWAS_P SIFT_score SIFT_converted_rankscore SIFT_pred Polyphen2_HDIV_score Polyphen2_HDIV_rankscore Polyphen2_HDIV_pred Polyphen2_HVAR_score Polyphen2_HVAR_rankscore Polyphen2_HVAR_pred LRT_score LRT_converted_rankscore LRT_pred MutationTaster_score MutationTaster_converted_rankscore MutationTaster_pred MutationAssessor_score MutationAssessor_score_rankscore MutationAssessor_pred FATHMM_score FATHMM_converted_rankscore FATHMM_pred PROVEAN_score PROVEAN_converted_rankscore PROVEAN_pred VEST3_score VEST3_rankscore MetaSVM_score MetaSVM_rankscore MetaSVM_pred MetaLR_score MetaLR_rankscore MetaLR_pred M-CAP_score M-CAP_rankscore M-CAP_pred CADD_raw CADD_raw_rankscore CADD_phred DANN_score DANN_rankscore fathmm-MKL_coding_score fathmm-MKL_coding_rankscore fathmm-MKL_coding_pred Eigen_coding_or_noncoding Eigen-raw Eigen-PC-raw GenoCanyon_score GenoCanyon_score_rankscore integrated_fitCons_score integrated_fitCons_score_rankscore integrated_confidence_value GERP++_RS GERP++_RS_rankscore phyloP100way_vertebrate phyloP100way_vertebrate_rankscore phyloP20way_mammalian phyloP20way_mammalian_rankscore phastCons100way_vertebrate phastCons100way_vertebrate_rankscore phastCons20way_mammalian phastCons20way_mammalian_rankscore SiPhy_29way_logOdds SiPhy_29way_logOdds_rankscore Interpro_domain GTEx_V6_gene GTEx_V6_tissue gnomAD_exome_ALL gnomAD_exome_AFR gnomAD_exome_AMR gnomAD_exome_ASJ gnomAD_exome_EAS gnomAD_exome_FIN gnomAD_exome_NFE gnomAD_exome_OTH gnomAD_exome_SAS gnomAD_genome_ALL gnomAD_genome_AFR gnomAD_genome_AMR gnomAD_genome_ASJ gnomAD_genome_EAS gnomAD_genome_FIN gnomAD_genome_NFE gnomAD_genome_OTH Otherinfo Otherinfo Otherinfo Otherinfo Otherinfo Otherinfo Otherinfo Otherinfo Otherinfo Otherinfo Otherinfo Otherinfo Otherinfo chr1 16342179 16342179 C - exonic HSPB7 stopgain HSPB7:NM_001349683:exon3:c.421delG:p.V141fs*0,HSPB7:NM_001349685:exon3:c.391delG:p.V131fs*0,HSPB7:NM_001349686:exon3:c.367delG:p.V123fs*0,HSPB7:NM_001349687:exon3:c.394delG:p.V132fs*0,HSPB7:NM_001349688:exon3:c.406delG:p.V136fs*0,HSPB7:NM_001349689:exon3:c.424delG:p.V142fs*0,HSPB7:NM_014424:exon3:c.409delG:p.V137fs*0,HSPB7:NM_001349682:exon4:c.634delG:p.V212fs*0 het 196.73 54 chr1 16342178 . AC A 196.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-2.723;DP=59;FS=0.000;MLEAC=1;MLEAF=0.500;MQ=84.03;MQ0=0;MQRankSum=-2.086;QD=3.33;RPA=2,1;RU=C;ReadPosRankSum=0.154;SOR=0.705;STR;set=variant GT:AD:DP:GQ:PL 0/1:39,15:54:99:234,0,708 chr1 1663928 1663928 - G exonic SLC35E2 frameshift insertion SLC35E2:NM_182838:exon6:c.766_767insC:p.M256Tfs*70 het 203.73 71 chr1 1663928 . A AG 203.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-6.021;DP=72;FS=103.805;MLEAC=1;MLEAF=0.500;MQ=86.84;MQ0=0;MQRankSum=-5.399;QD=2.83;ReadPosRankSum=-2.373;SOR=3.469;set=variant GT:AD:DP:GQ:PL 0/1:53,18:71:99:241,0,1340 chr1 888665 888665 T - exonic NOC2L frameshift deletion NOC2L:NM_015658:exon9:c.892delA:p.M298Wfs*1 het 97.73 30 chr1 888664 . AT A 97.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=-3.077;DP=31;FS=13.801;MLEAC=1;MLEAF=0.500;MQ=70.77;MQ0=0;MQRankSum=-2.308;QD=3.15;RPA=2,1;RU=T;ReadPosRankSum=-0.679;SOR=3.037;STR;set=variant GT:AD:DP:GQ:PL 0/1:21,9:30:99:135,0,382 chr1 1850628 1850636 AGCGGCAGG - exonic TMEM52 nonframeshift deletion TMEM52:NM_178545:exon1:c.69_77del:p.L24_L26del 0.36 0.067 0.51 0.48 0.49 0.39 0.0120 0 0 0.0181 0 0.0160 0 0.0103 0.28 0.086 0.35 . . rs575852588 COSM1167507 1(bone);2(NS);2(haematopoietic_and_lymphoid_tissue);3(lung);1(large_intestine) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.0247 0 0.0609 0.0194 0.0351 0.0289 0.0311 0.0278 0.0104 0.3785 0.1290 0.5622 0.3243 0.4570 0.4669 0.4871 0.4364 hom 16784.73 180 chr1 1850627 . CAGCGGCAGG C 16784.73 . AC=2;AF=1.00;AN=2;DP=190;FS=0.000;MLEAC=2;MLEAF=1.00;MQ=81.01;MQ0=0;QD=29.45;RPA=3,2;RU=AGCGGCAGG;SOR=0.861;STR;set=variant GT:AD:DP:GQ:PL 1/1:0,178:180:99:16822,536,0 chr1 11710779 11710779 - GCG exonic FBXO2 nonframeshift insertion FBXO2:NM_012168:exon2:c.134_135insCGC:p.A45_Y46insA 0.31 0.57 0.34 0.16 0.16 0.25 0.2401 0.4561 0.2843 0.1901 0 0.1406 0.2281 0.2716 0.17 0.3 0.12 . . rs538764329 COSM1180447 1(prostate);2(thyroid);2(large_intestine) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.2383 0.4812 0.3755 0.1241 0.2015 0.1225 0.1829 0.2347 0.2624 0.2955 0.5566 0.3714 0.1067 0.2094 0.1246 0.1983 0.2279 het 334.73 51 chr1 11710779 rs148874459 C CGCG 334.73 . AC=1;AF=0.500;AN=2;BaseQRankSum=2.342;DB;DP=51;FS=4.029;MLEAC=1;MLEAF=0.500;MQ=77.94;MQ0=0;MQRankSum=-1.879;QD=6.56;RPA=3,4;RU=GCG;ReadPosRankSum=1.075;SOR=1.292;STR;set=variant GT:AD:DP:GQ:PL 0/1:27,22:51:99:372,0,893 chr1 888659 888659 T C exonic NOC2L nonsynonymous SNV NOC2L:NM_015658:exon9:c.A898G:p.I300V 0.92 0.91 0.92 0.92 0.95 0.92 0.9355 0.9096 0.9557 0.9126 0.9600 0.9407 0.9509 0.9183 0.93 0.91 0.94 0.91 0.87 rs3748597 COSM4144219 1(thyroid) . . . . . . . . . . . 1.0 0.010 T 0.0 0.026 B 0.0 0.013 B 0.070 0.216 N 1 0.090 P -1.56 0.005 N -0.39 0.692 T 0.76 0.020 N 0.031 0.089 -0.957 0.397 T 0.000 0.000 T . . . -1.330 0.021 0.004 0.237 0.010 0.042 0.096 N c -1.383 -1.178 0.029 0.139 0.672 0.522 0 4.28 0.500 0.037 0.136 0.016 0.142 0.009 0.180 0.143 0.203 7.695 0.276 Armadillo-type fold ENSG00000188976.6|ENSG00000187583.6|ENSG00000187961.9|ENSG00000188976.6|ENSG00000187583.6|ENSG00000188976.6|ENSG00000188976.6|ENSG00000187961.9|ENSG00000188976.6|ENSG00000188976.6|ENSG00000187583.6 Adipose_Subcutaneous|Cells_Transformed_fibroblasts|Cells_Transformed_fibroblasts|Lung|Lung|Nerve_Tibial|Pancreas|Pancreas|Skin_Sun_Exposed_Lower_leg|Thyroid|Whole_Blood 0.9378 0.9079 0.9546 0.9347 0.9110 0.9604 0.9417 0.9396 0.9197 0.9348 0.9086 0.9487 0.9238 0.9100 0.9599 0.9455 0.9480 hom 1036.77 31 chr1 888659 rs3748597 T C 1036.77 PASS AC=2;AF=1.00;AN=2;DB;DP=31;Dels=0.00;FS=0.000;HaplotypeScore=8.6986;MLEAC=2;MLEAF=1.00;MQ=70.77;MQ0=0;POSITIVE_TRAIN_SITE;QD=33.44;SOR=0.892;VQSLOD=7.20;culprit=HaplotypeScore;set=variant2 GT:AD:DP:GQ:PL 1/1:0,31:31:90:1065,90,0 chr1 878314 878314 G C exonic SAMD11 synonymous SNV SAMD11:NM_152486:exon11:c.G1440C:p.G480G 0.043 0.0083 0.078 . 0.12 0.032 0.1068 0.0273 0.1349 0.0009 0.2532 0.1772 0.1081 0.0624 0.049 0.013 0.067 0.065 0.016 rs142558220 COSM426784 1(large_intestine) . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 0.0752 0.0112 0.0628 0.1793 0.0003 0.1014 0.0919 0.0975 0.0472 0.0659 0.0144 0.0537 0.1589 0.0006 0.1041 0.0911 0.0938 het 357.77 36 chr1 878314 rs142558220 G C 357.77 PASS AC=1;AF=0.500;AN=2;BaseQRankSum=0.955;DB;DP=36;Dels=0.00;FS=0.000;HaplotypeScore=6.9639;MLEAC=1;MLEAF=0.500;MQ=89.39;MQ0=0;MQRankSum=-1.811;QD=9.94;ReadPosRankSum=0.494;SOR=0.591;VQSLOD=4.09;culprit=MQRankSum;set=variant2 GT:AD:DP:GQ:PL 0/1:23,13:36:99:386,0,625