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Seqmule successfully tested on Red hat Enterprise Linux (RHEL ) version 5.4 #144

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Amjadhpc opened this issue Aug 1, 2016 · 1 comment
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@Amjadhpc
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@Amjadhpc Amjadhpc commented Aug 1, 2016

Red hat Enterprise Linux comes with default g++ compiler version 4.1.2.

Seqmule requires g++ version 4.6.3 or 4.4.7.
Following Steps show how to satisfy this requirement for RHEL 5.4

  1. Getting g++ 4.7
    Third party repo provides g++ 4.6.3 for Centos 5.X.
    https://people.centos.org/tru/devtools/5/x86_64/RPMS/

I downloaded and installed the following RPMS from the above repo.

devtoolset-1.0-binutils-2.22.52.0.1-10.el5.x86_64.rpm
devtoolset-1.0-binutils-devel-2.22.52.0.1-10.el5.x86_64.rpm
devtoolset-1.0-build-1-3.el5.noarch.rpm
devtoolset-1.0-gcc-4.7.0-5.2.el5.centos.x86_64.rpm
devtoolset-1.0-gcc-c++-4.7.0-5.2.el5.centos.x86_64.rpm
devtoolset-1.0-libstdc++-devel-4.7.0-5.2.el5.centos.x86_64.rpm
devtoolset-1.0-runtime-1-3.el5.noarch.rpm
scl-utils-20120229-1.el5.centos.x86_64.rpm

In addition downloaded and installed libgomp rpm
libgomp-4.4.7-1.el5.x86_64.rpm

I executed the following command to install the rpms in default location,

rpm -ivh .

  1. Adding g++ in path

    I added the path of g++ in enviroment variable PATH.
    export PATH=/opt/devtools/devtoolset-1.0/root/usr/bin/:$PATH
    This will make g++ 4.7 as default g++ compiler while building seqmule.

  2. Building Seqmule
    As shown in the website just run the ./Build all script from Seqmule root directory. and all packages requested will be installed.

  3. Running Seqmule
    Add java 1.7.0 in PATH environment variable to get seqmule running.

@yunfeiguo
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@yunfeiguo yunfeiguo commented Aug 1, 2016

Thanks, Amjad! Nice detailed steps!

@yunfeiguo yunfeiguo closed this Aug 1, 2016
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