v1.2.6

@yunfeiguo yunfeiguo released this Oct 27, 2016 · 6 commits to master since this release

  • fixed various bugs
  • minor improvements for stability
  • more verbose documentation

v1.2.5

@yunfeiguo yunfeiguo released this Feb 3, 2016 · 68 commits to master since this release

  • Stability improvement
  • Documentation improvement

v1.2.4

@yunfeiguo yunfeiguo released this Jan 8, 2016 · 103 commits to master since this release

2016-01-07 Yunfei Guo yunfeigu@usc.edu

  • Default exome definition changed to RefSeq exon
  • Citation added (SeqMule published on Scientific Reports!)
  • Updated tutorials and FAQs
  • Bug fixes

v.1.2.3 release

@yunfeiguo yunfeiguo released this Aug 14, 2015 · 130 commits to master since this release

  • bug fixes
  • add options in pipeline and stats subprograms to specify java executable

v1.2.2

@yunfeiguo yunfeiguo released this Aug 5, 2015 · 132 commits to master since this release

  • Bug fixes

v1.2.1

@yunfeiguo yunfeiguo released this Jul 9, 2015 · 136 commits to master since this release

  • Added a public machine image (AMI) for running SeqMule on Amazon EC2, see RUNNING IN THE CLOUD in Tutorials.

v1.2.0

@yunfeiguo yunfeiguo released this Jul 9, 2015 · 146 commits to master since this release

  • SeqMule now supports somatic variant calling via SAMtools and VarScan2
  • Support for Sun Grid Engine
  • New job script format (no influence for end users)
  • New online help interface
  • Enhanced job scheduling and more concurrency

v1.1.4

@yunfeiguo yunfeiguo released this Feb 13, 2015 · 315 commits to master since this release

fixed a bug in file name parsing.

v1.1.3

@yunfeiguo yunfeiguo released this Jan 31, 2015 · 320 commits to master since this release

  • Illumina TruSight Capture Kit BED files added
  • Replace Picard duplicate removal with SAMtools rmdup for faster speed
  • Improved runtime output
  • Bug fixes for /bin/sh, GATK3.3.0