Assembly-based analysis
uniline depends on the following programs. Versions in parentheses are guaranteed to work.
- samtools(0.1.19-44428cd)
- blast(2.2.31+)
- perl(v5.16.0)
- bedtools(v2.25.0)
Latest programs and scripts can be found in src/. Tutorials are BLAST-based gap-filling, not BWA-based gap-filling.