diff --git a/galaxy/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py b/galaxy/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py index 501cd18..d51dc47 100644 --- a/galaxy/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py +++ b/galaxy/data_managers/data_manager_mentalist_download_pubmlst/data_manager/mentalist_download_pubmlst.py @@ -17,6 +17,7 @@ def mentalist_download_pubmlst( data_manager_dict, kmer_size, scheme, params, target_directory, data_table_names=DEFAULT_DATA_TABLE_NAMES ): + scheme = scheme.replace('__pd__','#') translation_table = string.maketrans(string.punctuation, ("_" * 32)) base_path = scheme.lower().replace(" ", "_").translate(translation_table) + "_pubmlst" today = datetime.date.today().isoformat()