diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml index 174c2f0..05d4995 100644 --- a/.github/workflows/CI.yml +++ b/.github/workflows/CI.yml @@ -26,7 +26,7 @@ jobs: - run: cd python/ && pylint --rcfile=.pylintrc motifcluster - run: cd python/doc/ && make html - run: cd python/ && coverage xml - - uses: codecov/codecov-action@v3 + - uses: codecov/codecov-action@v4 with: files: ./python/coverage.xml fail_ci_if_error: true @@ -57,7 +57,7 @@ jobs: - run: cd R/ && Rscript -e "library(devtools); test()" - run: cd R/ && Rscript -e "library(lintr); lint_package(linters = with_defaults(object_name_linter=NULL,object_usage_linter=NULL,cyclocomp_linter=NULL,indentation_linter=NULL))" - run: cd R/ && Rscript -e "library(covr); cov = package_coverage(); to_cobertura(cov)" - - uses: codecov/codecov-action@v3 + - uses: codecov/codecov-action@v4 with: files: ./R/cobertura.xml fail_ci_if_error: true @@ -79,6 +79,8 @@ jobs: - uses: julia-actions/julia-processcoverage@v1 with: directories: julia/MotifCluster.jl/src - - uses: codecov/codecov-action@v3 + - uses: codecov/codecov-action@v4 with: files: lcov.info + fail_ci_if_error: true + verbose: true