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DESCRIPTION
NAMESPACE
README.md
primaryTranscriptAnnotation-manual.pdf
primaryTranscriptAnnotation-vignette.pdf
primaryTranscriptAnnotation.Rproj

README.md

primaryAnnotation R package

This package was developed for two purposes: (1) to generate data-driven transcript annotations based on nascent transcript sequencing data, and (2) to annotate de novo identified transcriptional units (e.g., genes and enhancers) based on existing annotations such as those from (1). The code for this package was employed in analyses underlying our manuscript in preparation: Transcriptional mechanisms and gene regulatory networks underlying early adipogenesis (this note will be updated upon publication).

Documentation

See the vignette and user manual:
primaryTranscriptAnnotation-vignette.pdf
primaryTranscriptAnnotation-manual.pdf

Installation

library(devtools)
install_github("WarrenDavidAnderson/genomicsRpackage/primaryTranscriptAnnotation")

Authors

Warren Anderson, Mete Civelek, Michael Guertin

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