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Commits on Jan 26, 2015
  1. Kevin Howe
  2. gw3

    added underscore in front of all the GFF filenames to avoid 7kncRNA.g…

    gw3 authored
    …ff being read in twice when ncRNA.gff is also specified
  3. gw3

    added 2014 modENCODE TF sites

    gw3 authored
Commits on Jan 22, 2015
  1. Kevin Howe

    Now ignore entries with CDS that is not present in current annotation…

    khowe authored
    … (allows for ENA annotation to be out of date with respect to latest WormBase annotation)
Commits on Jan 20, 2015
  1. Paul Davis
  2. Kevin Howe
  3. Kevin Howe
  4. Kevin Howe
Commits on Jan 16, 2015
  1. Kevin Howe
  2. Kevin Howe
  3. Kevin Howe
  4. Paul Davis
  5. Paul Davis

    7kncRNA method addition

    Paul-Davis authored
Commits on Jan 15, 2015
  1. Paul Davis

    Needed to add a getout for SUPERLINK stubs still connected to their p…

    Paul-Davis authored
    …arent chromosome object as they were causing Coords_converter to bail.
Commits on Jan 14, 2015
  1. Paul Davis

    addd the new pre_miRNA

    Paul-Davis authored
  2. Paul Davis
  3. Paul Davis
  4. Paul Davis
  5. Paul Davis
Commits on Jan 13, 2015
  1. Kevin Howe
  2. Paul Davis
  3. Paul Davis

    added a 1.5Gb memory limit as the OSTs were running at 1022 so still …

    Paul-Davis authored
    …bailing on the lsf MAX MEMORY limit
  4. Paul Davis

    added a 1Gb memory limit as a couple of the database access processes…

    Paul-Davis authored
    … were running over the default lsf limit
Commits on Jan 12, 2015
  1. Kevin Howe

    Fixed bug introduced in 1.255

    khowe authored
  2. Kevin Howe
Commits on Jan 9, 2015
  1. Kevin Howe
  2. gw3

    tighten up on the criteria for stranded reads - dont use data whose s…

    gw3 authored
    …trandedness has not yet been checked
  3. gw3

    Fixed variable out of scope

    gw3 authored
  4. gw3
  5. gw3

    Use names for the life-stages as well as codes in the description and…

    gw3 authored
    … report the number of samples used to find the mean and median.
Commits on Jan 8, 2015
  1. gw3
  2. gw3
  3. Kevin Howe
  4. Kevin Howe

    ABVar ids now sorted

    khowe authored
  5. gw3
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