Cancer Biology Group @ShanghaiTech

Repositories

• Bioinformatics-Resources

  Forked from openbiox/awosome-bioinformatics

  A curated list of resources for learning bioinformatics.
  CC0-1.0 73 6 0 1 Updated Oct 15, 2020

• Workshop

  Workshop weekly at Liu Lab

  data-science bioinformatics r workshop
  HTML 9 13 0 0 Updated Oct 15, 2020

• deconstructSigs

  Forked from raerose01/deconstructSigs

  deconstructSigs
  R 35 0 0 0 Updated Sep 10, 2020

• Noncoding-code-2020

  CDC20 noncoding project
  R Apache-2.0 0 0 0 0 Updated May 23, 2020

• PromoterMutSpot
  R 0 0 0 0 Updated May 21, 2020

• noncoding-cdc20

  Forked from zhangjing1589/noncoding
  R Apache-2.0 1 1 1 1 Updated Apr 27, 2020

• CDC20
  R 0 0 1 0 Updated Apr 20, 2020

• INDEL_signature

  Forked from taoziyu97/INDEL_signature

  about insertion and deletion in cancer exon genome
  R 1 0 0 0 Updated Apr 13, 2020

• deeplearning-biology

  Forked from hussius/deeplearning-biology

  A list of deep learning implementations in biology
  401 4 0 0 Updated Apr 8, 2020

• learning-bioinformatics-at-home

  Forked from harvardinformatics/learning-bioinformatics-at-home

  resources for learning bioinformatics
  MIT 61 0 0 0 Updated Apr 6, 2020

• Data-Science--Cheat-Sheet

  Forked from georgearun/Data-Science--Cheat-Sheet

  Cheat Sheets
  TeX 8,450 0 0 0 Updated Mar 15, 2020

• XSLab-docs

  上科大刘雪松课题组基因组学分析传承与分享知识库
  5 11 3 0 Updated Feb 21, 2020

• neoantigen_depletion

  neoantigen depletion checking and detection

  antigen immunotherapy neoantigen
  R 0 2 0 0 Updated Jan 7, 2020

• XSLiuLab.github.io

  Homepage of Xue-Song Liu lab
  HTML 1 3 2 0 Updated Jan 3, 2020

• neopeptide_data
  0 0 0 0 Updated Dec 26, 2019

• tumor-immunogenicity-score

  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020

  manuscript biomarker-discovery immunotherapy reproducible-analysis analysis-report tumor-immunogenicity
  R Apache-2.0 8 14 0 0 Updated Dec 17, 2019

• GSVAutils
  R 0 0 0 0 Updated Dec 6, 2019

• hmftools

  Forked from hartwigmedical/hmftools

  Various utility tools for working with genomics data
  Java GPL-3.0 14 0 0 0 Updated Nov 20, 2019

• BioForum2019-TIGS-poster

  A poster showing TIGS project at BioForum2019, ShanghaiTech University

  poster biomarker immunotherapy icb tigs
  HTML Apache-2.0 0 3 0 0 Updated Nov 18, 2019

• ten_great_papers

  Forked from widdowquinn/ten_great_papers

  Ten great papers for wet lab biologists starting out in computational biology
  MIT 9 0 0 0 Updated Oct 23, 2019

• pypresent

  Forked from Rachelmarty20/pypresent
  Jupyter Notebook MIT 2 0 0 0 Updated Sep 30, 2019

• phd-commits

  Forked from lazappi/phd-commits

  Functions for scraping git commits from repositories associated with a PhD (or anything else) and plotting them.
  R MIT 7 1 0 0 Updated Aug 7, 2019

• ggct
  R 0 0 0 0 Updated Jul 15, 2019

• pkg-dev-tutorial

  Forked from jennybc/pkg-dev-tutorial

  Package Development tutorial for useR! 2019 Toulouse
  R 31 0 0 0 Updated Jul 9, 2019

• TCGAsurvival

  Forked from mdozmorov/TCGAsurvival

  Scripts to analyze TCGA data
  R GPL-3.0 21 1 0 0 Updated Jun 12, 2019

• RCInterface

  Forked from dsidavis/RCInterface

  Materials for workshop on interface for R and C/C++/compiled code
  E 3 0 0 0 Updated May 29, 2019

• neoantigen_validation
  R 0 1 0 0 Updated May 24, 2019

• single-cell-tutorial

  Forked from theislab/single-cell-tutorial

  Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
  Jupyter Notebook 199 0 0 0 Updated May 23, 2019

• CNV_Calling_Pipeline

  ABSOLUTE Copy Number Calling Pipeline for Raw Sequencing Data
  Shell Apache-2.0 0 0 0 0 Updated May 8, 2019

• Beacon Archived

  Beacon (灯塔) of liulab

  liulab
  Shell 1 5 0 0 Updated Apr 8, 2019