diff --git a/drivers/clk/zynqmp/pll.c b/drivers/clk/zynqmp/pll.c
index ad4f13668ed6ff..f7bf8cf192832b 100644
--- a/drivers/clk/zynqmp/pll.c
+++ b/drivers/clk/zynqmp/pll.c
@@ -14,10 +14,12 @@
  * struct zynqmp_pll - PLL clock
  * @hw:		Handle between common and hardware-specific interfaces
  * @clk_id:	PLL clock ID
+ * @set_pll_mode:	Whether an IOCTL_SET_PLL_FRAC_MODE request be sent to ATF
  */
 struct zynqmp_pll {
 	struct clk_hw hw;
 	u32 clk_id;
+	bool set_pll_mode;
 };
 
 #define to_zynqmp_pll(_hw)	container_of(_hw, struct zynqmp_pll, hw)
@@ -84,6 +86,8 @@ static inline void zynqmp_pll_set_mode(struct clk_hw *hw, bool on)
 	if (ret)
 		pr_warn_once("%s() PLL set frac mode failed for %s, ret = %d\n",
 			     __func__, clk_name, ret);
+	else
+		clk->set_pll_mode = true;
 }
 
 /**
@@ -250,9 +254,15 @@ static int zynqmp_pll_enable(struct clk_hw *hw)
 	u32 clk_id = clk->clk_id;
 	int ret;
 
-	if (zynqmp_pll_is_enabled(hw))
+	/*
+	 * Don't skip enabling clock if there is an IOCTL_SET_PLL_FRAC_MODE request
+	 * that has been sent to ATF.
+	 */
+	if (zynqmp_pll_is_enabled(hw) && (!clk->set_pll_mode))
 		return 0;
 
+	clk->set_pll_mode = false;
+
 	ret = zynqmp_pm_clock_enable(clk_id);
 	if (ret)
 		pr_warn_once("%s() clock enable failed for %s, ret = %d\n",