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imcrease cell width
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casper937 committed Mar 8, 2023
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| Process | Parameters (value options) | Description | Input | Output |
|---------|----------------------------|-------------|-------|--------|
| `CBCL_FILTER_IMPUTE_MCA` | `cbcl_imputation_method` (`RF`, `MCA`) | Process filters selected phenotype data based on missingness, imputes missing values, and performs Multiple Correspondance Analysis (MCA) (DOI: 10.1285/i20705948v10n2p432). Imputation method can be chosen by setting `cbcl_imputation_method` to either `RF` (imputation by random forests using `missForest`) or `MCA` (imputation using MCA via `missMDA`). Individuals' coordinates for new MCA dimensions (principal coordinates) are stored in `cbcl_mca_coord.csv` with individuals in rows and dimensions in columns. | `cbcl_data.csv` | `CBCL_filter_impute_MCA.html`, `cbcl_filtered.csv`, `cbcl_imputed.csv`, `cbcl_mca_coord.csv`, `cbcl_mca.RData` |
| `CBCL_FILTER_IMPUTE_MCA` | `cbcl_imputation_method` (`RF`, `MCA`) | Process filters selected phenotype data based on missingness, imputes missing values, and performs Multiple Correspondance Analysis (MCA) (DOI:10.1285/i20705948v10n2p432). Imputation method can be chosen by setting `cbcl_imputation_method` to either `RF` (imputation by random forests using `missForest`) or `MCA` (imputation using MCA via `missMDA`). Individuals' coordinates for new MCA dimensions (principal coordinates) are stored in `cbcl_mca_coord.csv` with individuals in rows and dimensions in columns. | `cbcl_data.csv` | `CBCL_filter_impute_MCA.html`, `cbcl_filtered.csv`, `cbcl_imputed.csv`, `cbcl_mca_coord.csv`, `cbcl_mca.RData` |

## Omics data sample identifier mapping
| Process | Description | Input | Output |
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