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LightSheetUtils

LightSheet scripts that are useful to manipulate the data.

Description

For All scripts, you can get the ussage by typing ./script.py --help

bdvxml.py: Python class to generate Big Data Viewer compatible XML files

CleanUnlaid.py: Python script to remove all unlaid spots from a Mamut XML file

hdf5_to_8RAW.py: Python script to convert BDV HDF5 files into 8bit raw files

hdf5_to_TIFF.py: Python script to convert BDV HDF5 files into TIFF stack

makeIlastikAnalysisSetFromSingleTP.py: Python script to convert single timepoint BDV HDF5 files into a Ilastik compatible HDF5 file

makeIlastikAnalysisSet.py: Python script to convert a multiple timepoint BDV HDF5 file into a Ilastik compatible HDF5 file

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LightSheet scripts that are useful to manipulate the data.

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