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ZF-Mapper: A Simple and Complete Fluorescent Quantification Freeware for Zebrafish Images
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zfmapper
LICENSE
README.md
setup.cfg
setup.py

README.md

ZF-Mapper

A Simple and Complete Fluorescent Quantification Freeware for Zebrafish Images

Requirements

  • Python3
    • tkinter
    • tifffile
    • pandas

Usage

  1. select file(s)
  2. select thresold color
  3. select thresold value
  4. process files

Step 1, 2, 3 are in no particular order.

Image from Gyazo

Installation

binary

  1. download the compressed .zip file from releases page
  2. unzip the downloaded .zip file
  3. run the executable file

from source

install Python3 with tkinter, then run the followings:

pip install -e .
python3 ./zfmapper/zfmapper.py

License

This repository is licensed under the Apache License, Version 2.0, see LICENSE.

If you use ZF-Mapper in an academic work, please cite: https://doi.org/10.1089/zeb.2018.1683

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