Skip to content
master
Go to file
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

README.md

Binder

single-cell-bioinformatics

Course material in notebook format for learning about single cell bioinformatics methods. To view this material, you have several options:

1. View the live version

Where you can run and edit code (also accessible by clicking the pink "launch binder" badge above)

2. View the static version

Where you cannot run or edit code, but view all the content

3. Set this up on your own computer

    1. If you're using Windows, install git
    1. Install Miniconda with Python 3. Command line instructions for mac and linux are shown below.
# Mac OS X
curl https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh > miniconda.sh

# 64-bit Linux
curl https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh > miniconda.sh

# After downloading, install (both Mac and Linux)
bash -b miniconda.sh
    1. Clone this repository and all submodules
git clone --recursive https://github.com/YeoLab/single-cell-bioinformatics
    1. Go to the new directory
cd single-cell-bioinformatics
    1. Create a new environment with the necessary packages
conda create --yes -n single-cell-bioinformatics --file conda_requirements.txt
    1. Activate the environment
source activate single-cell-bioinformatics  # On windows, do "activate single-cell-bioinformatics"
    1. Install the remaiing requirements
pip install -r requirements.txt
    1. PHEW. Now you can launch the notebooks!!
jupyter notebook

Frozen versions of previous implementations

About

Course material in notebook format for learning about single cell bioinformatics methods

Resources

License

Releases

No releases published

Packages

No packages published
You can’t perform that action at this time.