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Deep generative modeling for single-cell transcriptomics
A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction
A high-throughput and unbiased module for interpreting scRNA-seq data.
BCR reconstruction from short single cell RNA-seq
Analyse enhancer strength based on MPRA experiments.
TCR Reconstruction Algorithm for Paired-End Single cell
datasets for scVI
Featurizer for MPRA and other analyses. Can run DeepSea, Deepbind, epigenetic features, 5mer counts, Encode motif matrix, DNA shape, conservation, and some sequence features
Differential expression analysis for single-cell RNA-seq data
Dimensionality reduction for single cell RNA-seq data
R wrapper around the LINE algorithm for network embedding
Algorithms for connectivity problems in condition-varying protein networks
Single-Cell Reproducibility Across Donors
A pipeline for processing UMI RNAseq data
Algorithms for connectivity problems in time-varying protein networks