Bioinformatics Group @ SMU

Repositories

• enrichplot

  Visualization of Functional Enrichment Result
  R 20 71 20 0 Updated Sep 17, 2020

• ggtree

  🎄Visualization and annotation of phylogenetic trees

  visualization ggplot2 r annotations phylogenetic-trees
  R 119 456 53 0 Updated Sep 17, 2020

• treedata-book

  📚 a complete reference book for treeio, tidytree and ggtree packages

  visualization data-import data-manipulation phylogeny ggtree tidytree treeio
  HTML 21 58 2 0 Updated Sep 17, 2020

• clusterProfiler

  📊statistical analysis and visualization of functional profiles for genes and gene clusters

  visualization go rstats kegg enrichment-analysis gsea
  R 160 391 96 0 Updated Sep 15, 2020

• treeio

  🌱 Base Classes and Functions for Phylogenetic Tree Input and Output

  parser exporter phylogenetic-trees
  R 13 47 7 0 Updated Sep 15, 2020

• biomedical-knowledge-mining-book

  📚 Biomedical knowledge mining using GOSemSim and clusterProfiler

  gene-ontology semantic-similarity disease-ontology medical-subject-headings enrichment-analysis gosemsim clusterprofiler
  TeX 3 5 0 0 Updated Sep 14, 2020

• tidytree

  🚿A Tidy Tool for Phylogenetic Tree Data Manipulation

  cran tidyverse tree-data phylogenetic-tree
  R 11 26 1 0 Updated Sep 14, 2020

• ggtreeExtra

  🍋 Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”
  R GPL-3.0 3 26 1 0 Updated Sep 11, 2020

• DOSE

  😷 Disease Ontology Semantic and Enrichment analysis

  semantic-similarity disease-ontology enrichment-analysis
  R 21 52 10 0 Updated Sep 10, 2020

• meshes

  MeSH Enrichment and Semantic analyses

  semantic-similarity medical-subject-headings enrichment-analysis
  R 2 6 0 0 Updated Sep 9, 2020

• ReactomePA

  Reactome Pathway Analysis
  R 7 23 11 0 Updated Sep 8, 2020

• GOSemSim

  ⛳ GO-terms Semantic Similarity Measures

  bioinformatics gene-ontology semantic-similarity
  R 14 30 7 0 Updated Sep 8, 2020

• ggmsa

  🚥 Visualizing pubication-quality multiple sequence alignment using ggplot2
  HTML 7 33 5 0 Updated Sep 1, 2020

• pkgdocs
  Makefile 0 0 0 0 Updated Aug 31, 2020

• aplot

  decorate a plot with associated information
  R 6 37 1 0 Updated Aug 31, 2020

• yulab.utils
  R 3 8 1 0 Updated Aug 28, 2020

• MicrobiotaProcess
  R 11 27 7 0 Updated Aug 28, 2020

• yulab-smu.github.io
  HTML 0 2 0 0 Updated Aug 22, 2020

• docs
  3 14 0 0 Updated Jul 16, 2020

• wget

  download files in R using wget -c
  R 2 12 0 0 Updated May 11, 2020

• ChIPseeker

  🎯 ChIP peak Annotation, Comparison and Visualization
  R 48 93 57 1 Updated Apr 28, 2020

• seqcombo

  sequence recombination visualization
  R 3 15 0 0 Updated Apr 28, 2020

• clusterProfiler.dplyr Archived

  dplyr verbs for clusterProfiler outputs
  R 3 10 4 0 Updated Mar 12, 2020

• plotbb

  Grammar of Graphics for base plot
  R 6 43 0 0 Updated Feb 11, 2020

• seqmagick

  sequence manipulation
  R 0 4 1 0 Updated Dec 19, 2019

• clusterProfiler-book

  a complete reference book for clusterProfiler and its sub-packages
  TeX 4 8 0 0 Updated Dec 19, 2019

• createKEGGdb

  Create KEGG.db Package
  R 6 28 4 0 Updated Dec 17, 2019

• lab_dot_files
  Vim script 0 1 0 0 Updated Jul 30, 2019

• iggtree

  interactive tree viewer using ggtree + shiny
  R 1 5 0 0 Updated Jul 9, 2019

• msacolor Archived
  R 0 4 3 0 Updated Jun 26, 2019