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@YuLab-SMU

Bioinformatics Group @ SMU

Research group led by Prof. Guangchuang Yu in School of Basic Medical Sciences, Southern Medical University

长期招聘博士后,欢迎咨询。


Research Interest

Microecological Analysis and Intervention

Analysis and intervention of gut microecology in patients with polycystic ovary syndrome based on phage-bacteria-human host interaction (supported by the National Science Foundation of China, No. 32270677).

Bioinformaitcs tool development

The research group has developed a variety of widely recognized bioinformatics tools in the fields of biomedical knowledge mining and knowledge discovery (e.g., clusterProfiler), phylogenetic data integration and visualization (e.g., treeio and ggtree), metagenomic data analysis (e.g., MicrobiotaProcess) and data visualization (e.g., ggbreak), etc., to help biologists explore and understand data.

Links

Pinned

  1. clusterProfiler clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    R 961 246

  2. ggtree ggtree Public

    🎄Visualization and annotation of phylogenetic trees

    R 813 171

  3. ChIPseeker ChIPseeker Public

    🎯 ChIP peak Annotation, Comparison and Visualization

    R 210 74

  4. MicrobiotaProcess MicrobiotaProcess Public

    🦠 A comprehensive R package for deep mining microbiome

    R 167 35

  5. ProjectYulab ProjectYulab Public

    ⏭️ Small coding tasks that enable you to participate in our development

    34 3

  6. plotbb plotbb Public

    🖌️ Grammar of Graphics for base plot

    R 52 7

Repositories

Showing 10 of 86 repositories
  • ggsc Public

    🧠 Visualizing Single Cell and Spatial Transcriptomics

    YuLab-SMU/ggsc’s past year of commit activity
    R 32 4 0 0 Updated Jun 25, 2024
  • yulab-smu.github.io Public

    🏠 Homepage for YuLab-SMU

    YuLab-SMU/yulab-smu.github.io’s past year of commit activity
    HTML 13 4 0 0 Updated Jun 25, 2024
  • YuLab-SMU/tigeR.data’s past year of commit activity
    R 0 1 1 0 Updated Jun 25, 2024
  • SVP Public
    YuLab-SMU/SVP’s past year of commit activity
    R 4 GPL-3.0 0 0 0 Updated Jun 24, 2024
  • tigeR Public

    🐯 tigeR: Tumor Immunotherapy Gene Expression Data Analysis R package

    YuLab-SMU/tigeR’s past year of commit activity
    R 5 7 0 0 Updated Jun 20, 2024
  • aplotExtra Public

    Creating composite plot using 'aplot'

    YuLab-SMU/aplotExtra’s past year of commit activity
    R 8 4 0 0 Updated Jun 17, 2024
  • aplot Public

    Decorate a plot with associated information

    YuLab-SMU/aplot’s past year of commit activity
    R 92 14 9 0 Updated Jun 17, 2024
  • clusterProfiler Public

    📊 A universal enrichment tool for interpreting omics data

    YuLab-SMU/clusterProfiler’s past year of commit activity
    R 961 246 295 3 Updated Jun 15, 2024
  • enrichplot Public

    Visualization of Functional Enrichment Result

    YuLab-SMU/enrichplot’s past year of commit activity
    R 221 63 112 0 Updated Jun 15, 2024
  • DOSE Public

    😷 Disease Ontology Semantic and Enrichment analysis

    YuLab-SMU/DOSE’s past year of commit activity
    R 107 34 22 2 Updated Jun 13, 2024

Most used topics

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