From d724ca722493e8b02261c426eb16ba837b41e330 Mon Sep 17 00:00:00 2001 From: GuangchuangYu Date: Tue, 16 Aug 2016 15:32:20 +0800 Subject: [PATCH] unit test --- DESCRIPTION | 2 +- NEWS | 5 ++++- appveyor.yml | 2 +- tests/testthat/test-txdb.R | 5 +++-- 4 files changed, 9 insertions(+), 5 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index ecb3066..38d254f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: ChIPseeker Type: Package Title: ChIPseeker for ChIP peak Annotation, Comparison, and Visualization -Version: 1.9.6 +Version: 1.9.7 Authors@R: c(person(given = "Guangchuang", family = "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre")), diff --git a/NEWS b/NEWS index 74fec3d..cfb76af 100644 --- a/NEWS +++ b/NEWS @@ -1,6 +1,9 @@ -CHANGES IN VERSION 1.9.6 +CHANGES IN VERSION 1.9.7 ------------------------ o unit test <2016-08-16, Tue> + +CHANGES IN VERSION 1.9.6 +------------------------ o update vignette <2016-08-16, Tue> CHANGES IN VERSION 1.9.5 diff --git a/appveyor.yml b/appveyor.yml index d1ffab7..4ad89bc 100644 --- a/appveyor.yml +++ b/appveyor.yml @@ -24,7 +24,7 @@ install: # Adapt as necessary starting from here build_script: - - travis-tool.sh install_bioc BiocStyle AnnotationDbi DO.db DOSE org.Hs.eg.db TxDb.Hsapiens.UCSC.hg19.knownGene + - travis-tool.sh install_bioc BiocStyle IRanges AnnotationDbi DO.db DOSE org.Hs.eg.db TxDb.Hsapiens.UCSC.hg19.knownGene - travis-tool.sh install_deps test_script: diff --git a/tests/testthat/test-txdb.R b/tests/testthat/test-txdb.R index 5963786..bcce5df 100644 --- a/tests/testthat/test-txdb.R +++ b/tests/testthat/test-txdb.R @@ -5,8 +5,9 @@ context("TXDB") test_that("txdb", { txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene + ChIPseeker:::.ChIPseekerEnv(txdb) expect_equal(ChIPseeker:::IDType(txdb), "Entrez Gene ID") expect_equal(ChIPseeker:::TXID2EG("70455"), "uc002qsd.4/1") - expect_equal(ChIPseeker:::TXID2EG("70455", geneOnly=TRUE), "1") -} + expect_equal(ChIPseeker:::TXID2EG("70455", geneIdOnly=TRUE), "1") +})