diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 735feb5..e305afe 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -118,5 +118,11 @@ jobs:
             echo "One or more required jobs failed or was cancelled. Marking finalizer as failed."
             exit 1
           fi
+      - name: Checkout the repository
+        uses: actions/checkout@v4
+      - name: Scan workflow logs for warnings and errors
+        run: scripts/scan_workflow_logs.sh ${{ github.run_id }}
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
       - name: Finalize
         run: echo "Pipeline complete!"
diff --git a/scripts/scan_workflow_logs.sh b/scripts/scan_workflow_logs.sh
new file mode 100755
index 0000000..fab9bb5
--- /dev/null
+++ b/scripts/scan_workflow_logs.sh
@@ -0,0 +1,116 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+# Check if run ID is provided as argument
+if [[ $# -eq 1 ]]; then
+  GITHUB_RUN_ID="$1"
+elif [[ -z "${GITHUB_RUN_ID:-}" ]]; then
+  echo "Usage: $0 <run_id>"
+  echo "Or set GITHUB_RUN_ID environment variable"
+  exit 1
+fi
+
+# Ensure required environment variables
+: "${GITHUB_REPOSITORY:?Missing GITHUB_REPOSITORY}"
+: "${GITHUB_TOKEN:?Missing GITHUB_TOKEN}"
+
+# Use the GH CLI with auth
+export GH_TOKEN="$GITHUB_TOKEN"
+
+# Create a temp dir for logs
+tmpdir=$(mktemp -d)
+trap 'rm -rf "$tmpdir"' EXIT
+
+cd "$tmpdir"
+
+# Get list of jobs in the run
+echo "Fetching jobs for run $GITHUB_RUN_ID..."
+jobs_json=$(gh api \
+  -H "Accept: application/vnd.github+json" \
+  "/repos/${GITHUB_REPOSITORY}/actions/runs/${GITHUB_RUN_ID}/jobs" \
+  --paginate)
+
+# Extract completed job IDs (excluding the current job if GITHUB_JOB is set and always excluding "Test Scripts")
+if [[ -n "${GITHUB_JOB:-}" ]]; then
+  completed_jobs=$(echo "$jobs_json" | jq -r --arg current_job "$GITHUB_JOB" '.jobs[] | select(.status == "completed") | select(.name != $current_job) | select(.name != "Test Scripts") | .id')
+else
+  completed_jobs=$(echo "$jobs_json" | jq -r '.jobs[] | select(.status == "completed") | select(.name != "Test Scripts") | .id')
+fi
+
+if [[ -z "$completed_jobs" ]]; then
+  echo "::warning::No completed jobs found to scan"
+  exit 0
+fi
+
+# Download logs for each completed job
+echo "Downloading logs for completed jobs..."
+for job_id in $completed_jobs; do
+  job_name=$(echo "$jobs_json" | jq -r --arg id "$job_id" '.jobs[] | select(.id == ($id | tonumber)) | .name')
+  echo "  Downloading logs for job: $job_name (ID: $job_id)"
+
+  # Create directory for this job's logs
+  mkdir -p "$job_name"
+
+  # Download the job's log
+  if gh api \
+    -H "Accept: application/vnd.github+json" \
+    "/repos/${GITHUB_REPOSITORY}/actions/jobs/${job_id}/logs" \
+    --method GET > "$job_name/log.txt" 2>/dev/null; then
+    echo "    ✓ Downloaded $(wc -l < "$job_name/log.txt") lines"
+  else
+    echo "    ✗ Failed to download logs"
+    rm -rf "$job_name"
+  fi
+done
+
+# Scan for lines with "deprecated", "warning:", or "error"
+echo "Scanning logs for warnings, deprecations, and errors..."
+
+# Process each log file and collect results
+results_file=$(mktemp)
+
+find . -type f -name "*.txt" | while IFS= read -r logfile; do
+  # Get the job name from the directory structure
+  job_name=$(dirname "$logfile" | sed 's|^\./||' | cut -d'/' -f1)
+
+  # Search for patterns with context
+  while IFS= read -r line; do
+    # Extract line number and content
+    line_num=$(echo "$line" | cut -d: -f2)
+    content=$(echo "$line" | cut -d: -f3-)
+
+    # Sanitize content to prevent command injection and log poisoning
+    sanitized_content=$(echo "$content" | tr -d '\n\r' | cut -c1-200)
+
+    # Determine the type of issue and output both annotation and count
+    if echo "$content" | grep -qiE '\berror\b'; then
+      echo "::error file=$job_name,line=$line_num::$sanitized_content"
+      echo "error" >> "$results_file"
+    elif echo "$content" | grep -qiE '\bwarning:'; then
+      echo "::warning file=$job_name,line=$line_num::$sanitized_content"
+      echo "warning" >> "$results_file"
+    elif echo "$content" | grep -qiE '\bdeprecated\b'; then
+      echo "::warning file=$job_name,line=$line_num::$sanitized_content"
+      echo "deprecated" >> "$results_file"
+    fi
+  done < <(grep -niE '(\berror\b|warning:|deprecated)' "$logfile" 2>/dev/null || true)
+done
+
+# Count results
+error_count=$(grep -c "error" "$results_file" 2>/dev/null || echo 0)
+warning_count=$(grep -c "warning" "$results_file" 2>/dev/null || echo 0)
+deprecated_count=$(grep -c "deprecated" "$results_file" 2>/dev/null || echo 0)
+
+# Summary
+echo
+echo "=== Log Scan Summary ==="
+echo "Errors found: $error_count"
+echo "Warnings found: $warning_count"
+echo "Deprecation notices found: $deprecated_count"
+echo "Total issues: $((error_count + warning_count + deprecated_count))"
+
+# Clean up temp file
+rm -f "$results_file"
+
+# Exit with success even if issues were found
+exit 0
diff --git "a/{{cookiecutter.project_name|replace(\" \", \"\")}}/.github/workflows/ci.yml" "b/{{cookiecutter.project_name|replace(\" \", \"\")}}/.github/workflows/ci.yml"
index b4dd0f7..f16970f 100644
--- "a/{{cookiecutter.project_name|replace(\" \", \"\")}}/.github/workflows/ci.yml"	
+++ "b/{{cookiecutter.project_name|replace(\" \", \"\")}}/.github/workflows/ci.yml"	
@@ -146,5 +146,11 @@ jobs:
             echo "One or more required jobs failed or was cancelled. Marking finalizer as failed."
             exit 1
           fi
+      - name: Checkout the repository
+        uses: actions/checkout@v4
+      - name: Scan workflow logs for warnings and errors
+        run: scripts/scan_workflow_logs.sh {% raw %}${{ github.run_id }}{% endraw %}
+        env:
+          GITHUB_TOKEN: "{% raw %}${{ secrets.GITHUB_TOKEN }}{% endraw %}"
       - name: Finalize
         run: echo "Pipeline complete!"
diff --git "a/{{cookiecutter.project_name|replace(\" \", \"\")}}/scripts/scan_workflow_logs.sh" "b/{{cookiecutter.project_name|replace(\" \", \"\")}}/scripts/scan_workflow_logs.sh"
new file mode 100755
index 0000000..fab9bb5
--- /dev/null
+++ "b/{{cookiecutter.project_name|replace(\" \", \"\")}}/scripts/scan_workflow_logs.sh"	
@@ -0,0 +1,116 @@
+#!/usr/bin/env bash
+set -euo pipefail
+
+# Check if run ID is provided as argument
+if [[ $# -eq 1 ]]; then
+  GITHUB_RUN_ID="$1"
+elif [[ -z "${GITHUB_RUN_ID:-}" ]]; then
+  echo "Usage: $0 <run_id>"
+  echo "Or set GITHUB_RUN_ID environment variable"
+  exit 1
+fi
+
+# Ensure required environment variables
+: "${GITHUB_REPOSITORY:?Missing GITHUB_REPOSITORY}"
+: "${GITHUB_TOKEN:?Missing GITHUB_TOKEN}"
+
+# Use the GH CLI with auth
+export GH_TOKEN="$GITHUB_TOKEN"
+
+# Create a temp dir for logs
+tmpdir=$(mktemp -d)
+trap 'rm -rf "$tmpdir"' EXIT
+
+cd "$tmpdir"
+
+# Get list of jobs in the run
+echo "Fetching jobs for run $GITHUB_RUN_ID..."
+jobs_json=$(gh api \
+  -H "Accept: application/vnd.github+json" \
+  "/repos/${GITHUB_REPOSITORY}/actions/runs/${GITHUB_RUN_ID}/jobs" \
+  --paginate)
+
+# Extract completed job IDs (excluding the current job if GITHUB_JOB is set and always excluding "Test Scripts")
+if [[ -n "${GITHUB_JOB:-}" ]]; then
+  completed_jobs=$(echo "$jobs_json" | jq -r --arg current_job "$GITHUB_JOB" '.jobs[] | select(.status == "completed") | select(.name != $current_job) | select(.name != "Test Scripts") | .id')
+else
+  completed_jobs=$(echo "$jobs_json" | jq -r '.jobs[] | select(.status == "completed") | select(.name != "Test Scripts") | .id')
+fi
+
+if [[ -z "$completed_jobs" ]]; then
+  echo "::warning::No completed jobs found to scan"
+  exit 0
+fi
+
+# Download logs for each completed job
+echo "Downloading logs for completed jobs..."
+for job_id in $completed_jobs; do
+  job_name=$(echo "$jobs_json" | jq -r --arg id "$job_id" '.jobs[] | select(.id == ($id | tonumber)) | .name')
+  echo "  Downloading logs for job: $job_name (ID: $job_id)"
+
+  # Create directory for this job's logs
+  mkdir -p "$job_name"
+
+  # Download the job's log
+  if gh api \
+    -H "Accept: application/vnd.github+json" \
+    "/repos/${GITHUB_REPOSITORY}/actions/jobs/${job_id}/logs" \
+    --method GET > "$job_name/log.txt" 2>/dev/null; then
+    echo "    ✓ Downloaded $(wc -l < "$job_name/log.txt") lines"
+  else
+    echo "    ✗ Failed to download logs"
+    rm -rf "$job_name"
+  fi
+done
+
+# Scan for lines with "deprecated", "warning:", or "error"
+echo "Scanning logs for warnings, deprecations, and errors..."
+
+# Process each log file and collect results
+results_file=$(mktemp)
+
+find . -type f -name "*.txt" | while IFS= read -r logfile; do
+  # Get the job name from the directory structure
+  job_name=$(dirname "$logfile" | sed 's|^\./||' | cut -d'/' -f1)
+
+  # Search for patterns with context
+  while IFS= read -r line; do
+    # Extract line number and content
+    line_num=$(echo "$line" | cut -d: -f2)
+    content=$(echo "$line" | cut -d: -f3-)
+
+    # Sanitize content to prevent command injection and log poisoning
+    sanitized_content=$(echo "$content" | tr -d '\n\r' | cut -c1-200)
+
+    # Determine the type of issue and output both annotation and count
+    if echo "$content" | grep -qiE '\berror\b'; then
+      echo "::error file=$job_name,line=$line_num::$sanitized_content"
+      echo "error" >> "$results_file"
+    elif echo "$content" | grep -qiE '\bwarning:'; then
+      echo "::warning file=$job_name,line=$line_num::$sanitized_content"
+      echo "warning" >> "$results_file"
+    elif echo "$content" | grep -qiE '\bdeprecated\b'; then
+      echo "::warning file=$job_name,line=$line_num::$sanitized_content"
+      echo "deprecated" >> "$results_file"
+    fi
+  done < <(grep -niE '(\berror\b|warning:|deprecated)' "$logfile" 2>/dev/null || true)
+done
+
+# Count results
+error_count=$(grep -c "error" "$results_file" 2>/dev/null || echo 0)
+warning_count=$(grep -c "warning" "$results_file" 2>/dev/null || echo 0)
+deprecated_count=$(grep -c "deprecated" "$results_file" 2>/dev/null || echo 0)
+
+# Summary
+echo
+echo "=== Log Scan Summary ==="
+echo "Errors found: $error_count"
+echo "Warnings found: $warning_count"
+echo "Deprecation notices found: $deprecated_count"
+echo "Total issues: $((error_count + warning_count + deprecated_count))"
+
+# Clean up temp file
+rm -f "$results_file"
+
+# Exit with success even if issues were found
+exit 0